BLASTX nr result
ID: Zingiber23_contig00041485
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00041485
(316 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III s... 187 1e-45
tpg|DAA37181.1| TPA: putative DNA-directed RNA polymerase family... 180 2e-43
ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [S... 180 2e-43
ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III s... 178 7e-43
gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japo... 176 3e-42
ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g... 176 3e-42
emb|CBI16226.3| unnamed protein product [Vitis vinifera] 168 6e-40
ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s... 168 6e-40
gb|ACJ63307.1| RNA polymerase III large subunit [Asparagus offic... 166 4e-39
ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III s... 165 7e-39
gb|EMT10482.1| DNA-directed RNA polymerase III subunit RPC1 [Aeg... 159 3e-37
gb|AAS79695.1| RNA polymerase III large subunit [Cycas revoluta] 159 5e-37
gb|AAS79696.1| RNA polymerase III large subunit [Zamia muricata] 157 1e-36
gb|AAS79697.1| RNA polymerase III large subunit [Ginkgo biloba] 157 1e-36
gb|AAS79689.1| RNA polymerase III large subunit [Welwitschia mir... 157 1e-36
gb|AAS79694.1| RNA polymerase III large subunit [Pinus nigra] 157 2e-36
gb|ACJ63309.1| RNA polymerase III large subunit [Illicium parvif... 157 2e-36
gb|EMT01541.1| DNA-directed RNA polymerase III subunit RPC1 [Aeg... 156 2e-36
gb|EMS65169.1| DNA-directed RNA polymerase III subunit rpc1 [Tri... 156 2e-36
gb|ACJ63310.1| RNA polymerase III large subunit [Liriodendron tu... 155 4e-36
>ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Setaria
italica]
Length = 1397
Score = 187 bits (475), Expect = 1e-45
Identities = 88/104 (84%), Positives = 97/104 (93%)
Frame = +3
Query: 3 DDVQPGDDLNQQKKKKIDDGYRECYDLISLYSKGKLTLHPGCNAAQTLELKITEVLNEIR 182
DDVQPG+ LN+QKKKKID+GY++C+DLISL++KG L LHPGCNAAQTLE KIT VLNEIR
Sbjct: 705 DDVQPGEHLNRQKKKKIDEGYKQCHDLISLFAKGALALHPGCNAAQTLEHKITGVLNEIR 764
Query: 183 TTAGNVCMNELHWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 314
T AGNVCM+ LHWRNSPLIMSQCGSKGSPINISQMVACVGQQSV
Sbjct: 765 TAAGNVCMDTLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 808
>tpg|DAA37181.1| TPA: putative DNA-directed RNA polymerase family protein [Zea mays]
Length = 1030
Score = 180 bits (457), Expect = 2e-43
Identities = 85/104 (81%), Positives = 95/104 (91%)
Frame = +3
Query: 3 DDVQPGDDLNQQKKKKIDDGYRECYDLISLYSKGKLTLHPGCNAAQTLELKITEVLNEIR 182
DDVQPG+ LN+QKKK+ID GY++C+DLISL++KG L LHPGCNAAQTLE IT VLNEIR
Sbjct: 702 DDVQPGEHLNRQKKKEIDGGYKKCHDLISLFAKGALALHPGCNAAQTLEHNITGVLNEIR 761
Query: 183 TTAGNVCMNELHWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 314
+ AGNVCM+ LHWRNSPLIMSQCGSKGSPINISQMVACVGQQSV
Sbjct: 762 SIAGNVCMDTLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 805
>ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
gi|241937900|gb|EES11045.1| hypothetical protein
SORBIDRAFT_06g021120 [Sorghum bicolor]
Length = 1391
Score = 180 bits (457), Expect = 2e-43
Identities = 85/104 (81%), Positives = 95/104 (91%)
Frame = +3
Query: 3 DDVQPGDDLNQQKKKKIDDGYRECYDLISLYSKGKLTLHPGCNAAQTLELKITEVLNEIR 182
DDVQPG+ LN+QKKK+ID GY++C+DLISL++KG L LHPGCNAAQTLE IT VLNEIR
Sbjct: 699 DDVQPGEHLNRQKKKEIDGGYKKCHDLISLFAKGALALHPGCNAAQTLEHNITGVLNEIR 758
Query: 183 TTAGNVCMNELHWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 314
+ AGNVCM+ LHWRNSPLIMSQCGSKGSPINISQMVACVGQQSV
Sbjct: 759 SIAGNVCMDTLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 802
>ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Oryza
brachyantha]
Length = 1389
Score = 178 bits (451), Expect = 7e-43
Identities = 83/104 (79%), Positives = 94/104 (90%)
Frame = +3
Query: 3 DDVQPGDDLNQQKKKKIDDGYRECYDLISLYSKGKLTLHPGCNAAQTLELKITEVLNEIR 182
DDV+PG+ L+QQKKKKID+GY+EC+DLI+ +SKG LTL PGCNAAQTLE KIT VLN+IR
Sbjct: 686 DDVRPGEHLDQQKKKKIDEGYKECHDLITSFSKGALTLQPGCNAAQTLEHKITHVLNKIR 745
Query: 183 TTAGNVCMNELHWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 314
AGN+CM+ LHWRNSPLIMSQCGSKGSPINISQMV CVGQQSV
Sbjct: 746 EAAGNICMDTLHWRNSPLIMSQCGSKGSPINISQMVVCVGQQSV 789
>gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japonica Group]
Length = 1321
Score = 176 bits (446), Expect = 3e-42
Identities = 84/104 (80%), Positives = 90/104 (86%)
Frame = +3
Query: 3 DDVQPGDDLNQQKKKKIDDGYRECYDLISLYSKGKLTLHPGCNAAQTLELKITEVLNEIR 182
DDVQPG+ LNQ+KK KID GY++C+DLI+ YSKG L L PGCNAAQTLE IT VLNEIR
Sbjct: 630 DDVQPGEHLNQEKKMKIDGGYKDCHDLIASYSKGALRLQPGCNAAQTLEQSITRVLNEIR 689
Query: 183 TTAGNVCMNELHWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 314
AG VCMN LHWRNSPLIMSQCGSKGSPINISQMVACVGQQSV
Sbjct: 690 EEAGKVCMNTLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 733
>ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa
Japonica Group] gi|38347455|emb|CAD41360.2|
OSJNBa0076N16.24 [Oryza sativa Japonica Group]
gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa
Japonica Group] gi|116310339|emb|CAH67354.1|
OSIGBa0130B08.14 [Oryza sativa Indica Group]
gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa
Indica Group] gi|215768005|dbj|BAH00234.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|218195112|gb|EEC77539.1| hypothetical protein
OsI_16437 [Oryza sativa Indica Group]
Length = 1383
Score = 176 bits (446), Expect = 3e-42
Identities = 84/104 (80%), Positives = 90/104 (86%)
Frame = +3
Query: 3 DDVQPGDDLNQQKKKKIDDGYRECYDLISLYSKGKLTLHPGCNAAQTLELKITEVLNEIR 182
DDVQPG+ LNQ+KK KID GY++C+DLI+ YSKG L L PGCNAAQTLE IT VLNEIR
Sbjct: 692 DDVQPGEHLNQEKKMKIDGGYKDCHDLIASYSKGALRLQPGCNAAQTLEQSITRVLNEIR 751
Query: 183 TTAGNVCMNELHWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 314
AG VCMN LHWRNSPLIMSQCGSKGSPINISQMVACVGQQSV
Sbjct: 752 EEAGKVCMNTLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 795
>emb|CBI16226.3| unnamed protein product [Vitis vinifera]
Length = 1819
Score = 168 bits (426), Expect = 6e-40
Identities = 79/104 (75%), Positives = 88/104 (84%)
Frame = +3
Query: 3 DDVQPGDDLNQQKKKKIDDGYRECYDLISLYSKGKLTLHPGCNAAQTLELKITEVLNEIR 182
DDVQPG LN QK K+I++GY C++LI Y+KGKL L PGCNAAQTLE +IT VLN+IR
Sbjct: 698 DDVQPGGLLNDQKSKRIEEGYENCHELIQQYNKGKLKLQPGCNAAQTLEAEITGVLNKIR 757
Query: 183 TTAGNVCMNELHWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 314
T NVCM ELHWRNSPLIMSQCGSKGSPINISQM+ACVGQQSV
Sbjct: 758 ETTANVCMEELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSV 801
>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
vinifera]
Length = 1383
Score = 168 bits (426), Expect = 6e-40
Identities = 79/104 (75%), Positives = 88/104 (84%)
Frame = +3
Query: 3 DDVQPGDDLNQQKKKKIDDGYRECYDLISLYSKGKLTLHPGCNAAQTLELKITEVLNEIR 182
DDVQPG LN QK K+I++GY C++LI Y+KGKL L PGCNAAQTLE +IT VLN+IR
Sbjct: 698 DDVQPGGLLNDQKSKRIEEGYENCHELIQQYNKGKLKLQPGCNAAQTLEAEITGVLNKIR 757
Query: 183 TTAGNVCMNELHWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 314
T NVCM ELHWRNSPLIMSQCGSKGSPINISQM+ACVGQQSV
Sbjct: 758 ETTANVCMEELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSV 801
>gb|ACJ63307.1| RNA polymerase III large subunit [Asparagus officinalis]
Length = 544
Score = 166 bits (419), Expect = 4e-39
Identities = 80/104 (76%), Positives = 86/104 (82%)
Frame = +3
Query: 3 DDVQPGDDLNQQKKKKIDDGYRECYDLISLYSKGKLTLHPGCNAAQTLELKITEVLNEIR 182
DDVQPG+ LNQQKK IDDGY C I LY KL L PG NAA+TLE++ITEVLNEIR
Sbjct: 192 DDVQPGERLNQQKKMTIDDGYGRCISFIELYENRKLKLRPGANAAETLEVEITEVLNEIR 251
Query: 183 TTAGNVCMNELHWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 314
TAG+VCM ELHWRNSPLIMSQCGSKGS INISQM+ACVGQQSV
Sbjct: 252 KTAGDVCMKELHWRNSPLIMSQCGSKGSAINISQMIACVGQQSV 295
>ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Brachypodium distachyon]
Length = 1392
Score = 165 bits (417), Expect = 7e-39
Identities = 77/106 (72%), Positives = 89/106 (83%), Gaps = 2/106 (1%)
Frame = +3
Query: 3 DDVQPGDDLNQQKKKKIDDGYRECYDLISLYSKGK--LTLHPGCNAAQTLELKITEVLNE 176
DDVQPG+ LNQ+KKK ID GY EC+DLI++YSKG LHPGCN AQTLE++++ +LN+
Sbjct: 697 DDVQPGESLNQKKKKTIDQGYTECHDLIAVYSKGAPGAELHPGCNRAQTLEVRVSAILNQ 756
Query: 177 IRTTAGNVCMNELHWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 314
+R AG CMN LHWRNSPLIMSQCGSKGSPINISQMV CVGQQSV
Sbjct: 757 LREKAGEHCMNTLHWRNSPLIMSQCGSKGSPINISQMVVCVGQQSV 802
>gb|EMT10482.1| DNA-directed RNA polymerase III subunit RPC1 [Aegilops tauschii]
Length = 832
Score = 159 bits (403), Expect = 3e-37
Identities = 75/104 (72%), Positives = 89/104 (85%)
Frame = +3
Query: 3 DDVQPGDDLNQQKKKKIDDGYRECYDLISLYSKGKLTLHPGCNAAQTLELKITEVLNEIR 182
DDVQPG+ LNQ+KK ID+GY +C++LI+LYSKG L PGCN AQTLE +I+ +LN++R
Sbjct: 153 DDVQPGESLNQKKKITIDEGYEKCHELIALYSKGDLIPQPGCNRAQTLESQISCLLNKLR 212
Query: 183 TTAGNVCMNELHWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 314
TAG+ CM+ LHWRNSPLIMSQCGSKGSPINISQMV CVGQQSV
Sbjct: 213 ETAGDDCMSTLHWRNSPLIMSQCGSKGSPINISQMVVCVGQQSV 256
>gb|AAS79695.1| RNA polymerase III large subunit [Cycas revoluta]
Length = 548
Score = 159 bits (401), Expect = 5e-37
Identities = 76/104 (73%), Positives = 88/104 (84%)
Frame = +3
Query: 3 DDVQPGDDLNQQKKKKIDDGYRECYDLISLYSKGKLTLHPGCNAAQTLELKITEVLNEIR 182
DDVQPG L+ QK+++I +GY +C I LY+KGKLTL PGCNAAQTLE +IT LN+IR
Sbjct: 194 DDVQPGTRLSAQKEERIKEGYSKCDMHIDLYNKGKLTLQPGCNAAQTLEAEITGELNKIR 253
Query: 183 TTAGNVCMNELHWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 314
AG+VC+ ELHWRNSPLIMSQCGSKGSPINISQM+ACVGQQSV
Sbjct: 254 EIAGSVCLKELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSV 297
>gb|AAS79696.1| RNA polymerase III large subunit [Zamia muricata]
Length = 548
Score = 157 bits (398), Expect = 1e-36
Identities = 75/104 (72%), Positives = 88/104 (84%)
Frame = +3
Query: 3 DDVQPGDDLNQQKKKKIDDGYRECYDLISLYSKGKLTLHPGCNAAQTLELKITEVLNEIR 182
DDVQPG L+ +K+++I +GY +C I LY+KGKLTL PGCNAAQTLE +IT LN+IR
Sbjct: 194 DDVQPGTRLSAKKEERIKEGYSKCDMHIDLYNKGKLTLQPGCNAAQTLEAEITGELNKIR 253
Query: 183 TTAGNVCMNELHWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 314
AG+VC+ ELHWRNSPLIMSQCGSKGSPINISQM+ACVGQQSV
Sbjct: 254 EVAGSVCLKELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSV 297
>gb|AAS79697.1| RNA polymerase III large subunit [Ginkgo biloba]
Length = 548
Score = 157 bits (398), Expect = 1e-36
Identities = 75/104 (72%), Positives = 88/104 (84%)
Frame = +3
Query: 3 DDVQPGDDLNQQKKKKIDDGYRECYDLISLYSKGKLTLHPGCNAAQTLELKITEVLNEIR 182
DDVQPG L+ +K+++I +GY +C I LY+KGKLTL PGCNAAQTLE +IT LN+IR
Sbjct: 194 DDVQPGSRLSAKKEQRIREGYSKCDMHIDLYNKGKLTLQPGCNAAQTLEAEITGELNKIR 253
Query: 183 TTAGNVCMNELHWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 314
AG+VC+ ELHWRNSPLIMSQCGSKGSPINISQM+ACVGQQSV
Sbjct: 254 EVAGSVCLKELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSV 297
>gb|AAS79689.1| RNA polymerase III large subunit [Welwitschia mirabilis]
Length = 548
Score = 157 bits (397), Expect = 1e-36
Identities = 75/104 (72%), Positives = 88/104 (84%)
Frame = +3
Query: 3 DDVQPGDDLNQQKKKKIDDGYRECYDLISLYSKGKLTLHPGCNAAQTLELKITEVLNEIR 182
DDVQPG L+ QK+++I +GY +C I LY+KGKL+L PGCNAAQTLE +IT LN+IR
Sbjct: 194 DDVQPGARLSSQKEERIKEGYSKCGMHIDLYNKGKLSLQPGCNAAQTLEAEITGELNKIR 253
Query: 183 TTAGNVCMNELHWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 314
AG+VC+ ELHWRNSPLIMSQCGSKGSPINISQM+ACVGQQSV
Sbjct: 254 EIAGSVCLKELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSV 297
>gb|AAS79694.1| RNA polymerase III large subunit [Pinus nigra]
Length = 548
Score = 157 bits (396), Expect = 2e-36
Identities = 75/104 (72%), Positives = 87/104 (83%)
Frame = +3
Query: 3 DDVQPGDDLNQQKKKKIDDGYRECYDLISLYSKGKLTLHPGCNAAQTLELKITEVLNEIR 182
DDVQPG L QK+++I +GY +C I LY+KGKLTL PGCN+AQTLE +IT LN+IR
Sbjct: 194 DDVQPGARLTAQKEERIREGYNKCDMHIDLYNKGKLTLQPGCNSAQTLEAEITGELNKIR 253
Query: 183 TTAGNVCMNELHWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 314
AG+VC+ ELHWRNSPLIMSQCGSKGSPINISQM+ACVGQQSV
Sbjct: 254 EIAGSVCLRELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSV 297
>gb|ACJ63309.1| RNA polymerase III large subunit [Illicium parviflorum]
Length = 546
Score = 157 bits (396), Expect = 2e-36
Identities = 75/104 (72%), Positives = 87/104 (83%)
Frame = +3
Query: 3 DDVQPGDDLNQQKKKKIDDGYRECYDLISLYSKGKLTLHPGCNAAQTLELKITEVLNEIR 182
DDVQPG L QK+++I +GY +C I LY+KGKLTL PGCN+AQTLE +IT LN+IR
Sbjct: 192 DDVQPGARLTAQKEERIREGYNKCDMHIDLYNKGKLTLQPGCNSAQTLEAEITGELNKIR 251
Query: 183 TTAGNVCMNELHWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 314
AG+VC+ ELHWRNSPLIMSQCGSKGSPINISQM+ACVGQQSV
Sbjct: 252 EIAGSVCLRELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSV 295
>gb|EMT01541.1| DNA-directed RNA polymerase III subunit RPC1 [Aegilops tauschii]
Length = 1117
Score = 156 bits (395), Expect = 2e-36
Identities = 73/104 (70%), Positives = 88/104 (84%)
Frame = +3
Query: 3 DDVQPGDDLNQQKKKKIDDGYRECYDLISLYSKGKLTLHPGCNAAQTLELKITEVLNEIR 182
DDVQPG+ LN++K K I +GY+EC++LI+ YSKG L PGC+ AQTLE +I+ VLN++R
Sbjct: 417 DDVQPGESLNEKKGKTIGEGYQECHELIAQYSKGALKPQPGCSRAQTLEARISGVLNKLR 476
Query: 183 TTAGNVCMNELHWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 314
TAG+ CM+ LHWRNSPLIMSQCGSKGSPINISQMV CVGQQSV
Sbjct: 477 DTAGDHCMSTLHWRNSPLIMSQCGSKGSPINISQMVVCVGQQSV 520
>gb|EMS65169.1| DNA-directed RNA polymerase III subunit rpc1 [Triticum urartu]
Length = 1248
Score = 156 bits (395), Expect = 2e-36
Identities = 73/104 (70%), Positives = 88/104 (84%)
Frame = +3
Query: 3 DDVQPGDDLNQQKKKKIDDGYRECYDLISLYSKGKLTLHPGCNAAQTLELKITEVLNEIR 182
DDVQPG+ LN++K K I +GY+EC++LI+ YSKG L PGC+ AQTLE +I+ VLN++R
Sbjct: 548 DDVQPGESLNEKKGKTIGEGYQECHELIAQYSKGALKPQPGCSRAQTLEARISGVLNKLR 607
Query: 183 TTAGNVCMNELHWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 314
TAG+ CM+ LHWRNSPLIMSQCGSKGSPINISQMV CVGQQSV
Sbjct: 608 DTAGDHCMSTLHWRNSPLIMSQCGSKGSPINISQMVVCVGQQSV 651
>gb|ACJ63310.1| RNA polymerase III large subunit [Liriodendron tulipifera]
Length = 546
Score = 155 bits (393), Expect = 4e-36
Identities = 76/104 (73%), Positives = 84/104 (80%)
Frame = +3
Query: 3 DDVQPGDDLNQQKKKKIDDGYRECYDLISLYSKGKLTLHPGCNAAQTLELKITEVLNEIR 182
DDVQPG+ LN+ KK +I+ GY+EC DLI+ Y+ G L L PGCNAAQTLE IT LN+IR
Sbjct: 194 DDVQPGEHLNRNKKLEIEKGYKECDDLINRYNTGGLKLLPGCNAAQTLESNITGKLNDIR 253
Query: 183 TTAGNVCMNELHWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 314
A VCM LHWRNSPLIMSQCGSKGSPINISQMVACVGQQSV
Sbjct: 254 EAAAKVCMASLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 297