BLASTX nr result
ID: Zingiber23_contig00041162
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00041162
(222 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_007475705.1| hypothetical chloroplast RF34 [Zingiber spec... 94 2e-17
gb|AEZ48790.1| photosystem I assembly protein Ycf3, partial [Spa... 94 2e-17
ref|YP_008854595.1| hypothetical chloroplast RF34 [Curcuma rosco... 94 2e-17
ref|YP_874654.1| photosystem I assembly protein ycf3 [Hordeum vu... 93 3e-17
gb|AHI87528.1| photosystem I assembly protein Ycf3, hypothetical... 93 4e-17
ref|YP_052750.1| photosystem I assembly protein Ycf3 [Oryza niva... 93 4e-17
ref|NP_039384.1| photosystem I assembly protein Ycf3 [Oryza sati... 93 4e-17
prf||1603356AC intron-containing ORF 170 93 4e-17
sp|P0C517.1|YCF3_ORYSI RecName: Full=Photosystem I assembly prot... 93 4e-17
dbj|BAD81968.1| Chloroplast photosystem I assembly protein Ycf3 ... 93 4e-17
ref|YP_008854426.1| hypothetical chloroplast RF34 [Musa textilis... 92 5e-17
ref|YP_007475962.1| hypothetical chloroplast RF34 [Bismarckia no... 92 5e-17
ref|YP_007475620.1| hypothetical chloroplast RF34 [Heliconia col... 92 5e-17
gb|AEZ48794.1| photosystem I assembly protein Ycf3, partial [Tra... 92 5e-17
gb|ADD30856.1| putative RF3 protein [Dillenia indica] 92 5e-17
ref|YP_538936.1| photosystem I assembly protein Ycf3 [Gossypium ... 92 9e-17
ref|YP_006503444.1| photosystem I assembly protein Ycf3 (chlorop... 92 9e-17
ref|YP_784474.1| photosystem I assembly protein ycf3 [Piper ceno... 92 9e-17
sp|P27324.2|YCF3_MAIZE RecName: Full=Photosystem I assembly prot... 91 1e-16
gb|AAB30283.2| IRF170 [Zea mays subsp. mays] 91 1e-16
>ref|YP_007475705.1| hypothetical chloroplast RF34 [Zingiber spectabile]
gi|449326185|gb|AGE92770.1| hypothetical chloroplast
RF34 [Zingiber spectabile]
Length = 169
Score = 94.0 bits (232), Expect = 2e-17
Identities = 47/48 (97%), Positives = 47/48 (97%)
Frame = +2
Query: 77 MPRSQINANFIDKTFSIVANILLRIIPTTSGEKKAFTYYRDGMLAQSE 220
MPRSQINANFIDKT SIVANILLRIIPTTSGEKKAFTYYRDGMLAQSE
Sbjct: 1 MPRSQINANFIDKTSSIVANILLRIIPTTSGEKKAFTYYRDGMLAQSE 48
>gb|AEZ48790.1| photosystem I assembly protein Ycf3, partial [Sparganium
eurycarpum]
Length = 168
Score = 94.0 bits (232), Expect = 2e-17
Identities = 46/48 (95%), Positives = 47/48 (97%)
Frame = +2
Query: 77 MPRSQINANFIDKTFSIVANILLRIIPTTSGEKKAFTYYRDGMLAQSE 220
MPRS+IN NFIDKTFSIVANILLRIIPTTSGEKKAFTYYRDGMLAQSE
Sbjct: 1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKKAFTYYRDGMLAQSE 48
>ref|YP_008854595.1| hypothetical chloroplast RF34 [Curcuma roscoeana]
gi|374411597|gb|AEZ48789.1| photosystem I assembly
protein Ycf3, partial [Renealmia alpinia]
gi|449326793|gb|AGE93371.1| hypothetical chloroplast
RF34 [Alpinia zerumbet] gi|557637502|gb|AHA13097.1|
hypothetical chloroplast RF34 [Curcuma roscoeana]
Length = 168
Score = 94.0 bits (232), Expect = 2e-17
Identities = 47/48 (97%), Positives = 47/48 (97%)
Frame = +2
Query: 77 MPRSQINANFIDKTFSIVANILLRIIPTTSGEKKAFTYYRDGMLAQSE 220
MPRSQINANFIDKT SIVANILLRIIPTTSGEKKAFTYYRDGMLAQSE
Sbjct: 1 MPRSQINANFIDKTSSIVANILLRIIPTTSGEKKAFTYYRDGMLAQSE 48
>ref|YP_874654.1| photosystem I assembly protein ycf3 [Hordeum vulgare subsp.
vulgare] gi|171704520|sp|A1E9J2.1|YCF3_HORVU RecName:
Full=Photosystem I assembly protein Ycf3
gi|118201043|gb|ABK79414.1| photosystem I assembly
protein ycf3 [Hordeum vulgare subsp. vulgare]
Length = 170
Score = 93.2 bits (230), Expect = 3e-17
Identities = 44/48 (91%), Positives = 47/48 (97%)
Frame = +2
Query: 77 MPRSQINANFIDKTFSIVANILLRIIPTTSGEKKAFTYYRDGMLAQSE 220
MPRS++N NFIDKTFSI+ANILLRIIPTTSGEKKAFTYYRDGMLAQSE
Sbjct: 1 MPRSRVNGNFIDKTFSIIANILLRIIPTTSGEKKAFTYYRDGMLAQSE 48
>gb|AHI87528.1| photosystem I assembly protein Ycf3, hypothetical chloroplast RF34
(chloroplast) [Chionographis japonica]
Length = 170
Score = 92.8 bits (229), Expect = 4e-17
Identities = 45/48 (93%), Positives = 47/48 (97%)
Frame = +2
Query: 77 MPRSQINANFIDKTFSIVANILLRIIPTTSGEKKAFTYYRDGMLAQSE 220
MPRS+IN NFIDKTFSIVANI+LRIIPTTSGEKKAFTYYRDGMLAQSE
Sbjct: 1 MPRSRINGNFIDKTFSIVANIVLRIIPTTSGEKKAFTYYRDGMLAQSE 48
>ref|YP_052750.1| photosystem I assembly protein Ycf3 [Oryza nivara]
gi|68053141|sp|Q6ENH3.1|YCF3_ORYNI RecName:
Full=Photosystem I assembly protein Ycf3
gi|49614996|dbj|BAD26779.1| photosystem I assembly
protein Ycf3 [Oryza nivara]
Length = 170
Score = 92.8 bits (229), Expect = 4e-17
Identities = 45/48 (93%), Positives = 47/48 (97%)
Frame = +2
Query: 77 MPRSQINANFIDKTFSIVANILLRIIPTTSGEKKAFTYYRDGMLAQSE 220
MPRS+IN NFIDKTFSIVANILLRIIPTTSGEK+AFTYYRDGMLAQSE
Sbjct: 1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKRAFTYYRDGMLAQSE 48
>ref|NP_039384.1| photosystem I assembly protein Ycf3 [Oryza sativa Japonica Group]
gi|669081|emb|CAA33997.1| unnamed protein product [Oryza
sativa Japonica Group]
Length = 169
Score = 92.8 bits (229), Expect = 4e-17
Identities = 45/48 (93%), Positives = 47/48 (97%)
Frame = +2
Query: 77 MPRSQINANFIDKTFSIVANILLRIIPTTSGEKKAFTYYRDGMLAQSE 220
MPRS+IN NFIDKTFSIVANILLRIIPTTSGEK+AFTYYRDGMLAQSE
Sbjct: 1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKRAFTYYRDGMLAQSE 48
>prf||1603356AC intron-containing ORF 170
Length = 170
Score = 92.8 bits (229), Expect = 4e-17
Identities = 45/48 (93%), Positives = 47/48 (97%)
Frame = +2
Query: 77 MPRSQINANFIDKTFSIVANILLRIIPTTSGEKKAFTYYRDGMLAQSE 220
MPRS+IN NFIDKTFSIVANILLRIIPTTSGEK+AFTYYRDGMLAQSE
Sbjct: 1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKRAFTYYRDGMLAQSE 48
>sp|P0C517.1|YCF3_ORYSI RecName: Full=Photosystem I assembly protein Ycf3
gi|148887458|sp|P12203.3|YCF3_ORYSJ RecName:
Full=Photosystem I assembly protein Ycf3
gi|148897905|sp|P0C516.1|YCF3_ORYSA RecName:
Full=Photosystem I assembly protein Ycf3
Length = 170
Score = 92.8 bits (229), Expect = 4e-17
Identities = 45/48 (93%), Positives = 47/48 (97%)
Frame = +2
Query: 77 MPRSQINANFIDKTFSIVANILLRIIPTTSGEKKAFTYYRDGMLAQSE 220
MPRS+IN NFIDKTFSIVANILLRIIPTTSGEK+AFTYYRDGMLAQSE
Sbjct: 1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKRAFTYYRDGMLAQSE 48
>dbj|BAD81968.1| Chloroplast photosystem I assembly protein Ycf3 [Oryza sativa
Japonica Group]
Length = 169
Score = 92.8 bits (229), Expect = 4e-17
Identities = 45/48 (93%), Positives = 47/48 (97%)
Frame = +2
Query: 77 MPRSQINANFIDKTFSIVANILLRIIPTTSGEKKAFTYYRDGMLAQSE 220
MPRS+IN NFIDKTFSIVANILLRIIPTTSGEK+AFTYYRDGMLAQSE
Sbjct: 1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKRAFTYYRDGMLAQSE 48
>ref|YP_008854426.1| hypothetical chloroplast RF34 [Musa textilis]
gi|525312458|emb|CCW72376.1| ycf3 (chloroplast) [Musa
acuminata subsp. malaccensis]
gi|557636913|gb|AHA12515.1| hypothetical chloroplast
RF34 [Musa textilis]
Length = 168
Score = 92.4 bits (228), Expect = 5e-17
Identities = 46/48 (95%), Positives = 47/48 (97%)
Frame = +2
Query: 77 MPRSQINANFIDKTFSIVANILLRIIPTTSGEKKAFTYYRDGMLAQSE 220
MPRS+INANFIDKT SIVANILLRIIPTTSGEKKAFTYYRDGMLAQSE
Sbjct: 1 MPRSRINANFIDKTSSIVANILLRIIPTTSGEKKAFTYYRDGMLAQSE 48
>ref|YP_007475962.1| hypothetical chloroplast RF34 [Bismarckia nobilis]
gi|449326445|gb|AGE93027.1| hypothetical chloroplast
RF34 [Bismarckia nobilis]
Length = 170
Score = 92.4 bits (228), Expect = 5e-17
Identities = 46/48 (95%), Positives = 47/48 (97%)
Frame = +2
Query: 77 MPRSQINANFIDKTFSIVANILLRIIPTTSGEKKAFTYYRDGMLAQSE 220
MPRS+INANFIDKT SIVANILLRIIPTTSGEKKAFTYYRDGMLAQSE
Sbjct: 1 MPRSRINANFIDKTSSIVANILLRIIPTTSGEKKAFTYYRDGMLAQSE 48
>ref|YP_007475620.1| hypothetical chloroplast RF34 [Heliconia collinsiana]
gi|449326099|gb|AGE92685.1| hypothetical chloroplast
RF34 [Heliconia collinsiana] gi|557637157|gb|AHA12756.1|
hypothetical chloroplast RF34 [Canna indica]
gi|557637589|gb|AHA13183.1| hypothetical chloroplast
RF34 [Thaumatococcus daniellii]
Length = 168
Score = 92.4 bits (228), Expect = 5e-17
Identities = 46/48 (95%), Positives = 47/48 (97%)
Frame = +2
Query: 77 MPRSQINANFIDKTFSIVANILLRIIPTTSGEKKAFTYYRDGMLAQSE 220
MPRS+INANFIDKT SIVANILLRIIPTTSGEKKAFTYYRDGMLAQSE
Sbjct: 1 MPRSRINANFIDKTSSIVANILLRIIPTTSGEKKAFTYYRDGMLAQSE 48
>gb|AEZ48794.1| photosystem I assembly protein Ycf3, partial [Tradescantia
ohiensis]
Length = 168
Score = 92.4 bits (228), Expect = 5e-17
Identities = 46/48 (95%), Positives = 47/48 (97%)
Frame = +2
Query: 77 MPRSQINANFIDKTFSIVANILLRIIPTTSGEKKAFTYYRDGMLAQSE 220
MPRS+INANFIDKT SIVANILLRIIPTTSGEKKAFTYYRDGMLAQSE
Sbjct: 1 MPRSRINANFIDKTSSIVANILLRIIPTTSGEKKAFTYYRDGMLAQSE 48
>gb|ADD30856.1| putative RF3 protein [Dillenia indica]
Length = 168
Score = 92.4 bits (228), Expect = 5e-17
Identities = 45/48 (93%), Positives = 47/48 (97%)
Frame = +2
Query: 77 MPRSQINANFIDKTFSIVANILLRIIPTTSGEKKAFTYYRDGMLAQSE 220
MPRS+IN NFIDKTFSIVANILLRIIPTTSGEK+AFTYYRDGMLAQSE
Sbjct: 1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGMLAQSE 48
>ref|YP_538936.1| photosystem I assembly protein Ycf3 [Gossypium hirsutum]
gi|119368500|ref|YP_913188.1| PSI accumulation protein
[Gossypium barbadense] gi|325210931|ref|YP_004286005.1|
hypothetical chloroplast RF34 [Gossypium thurberi]
gi|372290933|ref|YP_005087694.1| photosystem I assembly
protein Ycf3 (chloroplast) [Gossypium raimondii]
gi|372291032|ref|YP_005087790.1| photosystem I assembly
protein Ycf3 (chloroplast) [Gossypium darwinii]
gi|372291386|ref|YP_005088281.1| photosystem I assembly
protein Ycf3 (chloroplast) [Gossypium tomentosum]
gi|372291484|ref|YP_005088377.1| photosystem I assembly
protein Ycf3 (chloroplast) [Gossypium herbaceum subsp.
africanum] gi|372291774|ref|YP_005088917.1| photosystem
I assembly protein Ycf3 (chloroplast) [Gossypium
mustelinum] gi|372291858|ref|YP_005089000.1| photosystem
I assembly protein Ycf3 (chloroplast) [Gossypium
arboreum] gi|386800838|ref|YP_006303492.1| photosystem I
assembly protein Ycf3 (chloroplast) [Gossypium
gossypioides] gi|394830627|ref|YP_006503278.1|
photosystem I assembly protein Ycf3 (chloroplast)
[Gossypium incanum] gi|394830714|ref|YP_006503361.1|
photosystem I assembly protein Ycf3 (chloroplast)
[Gossypium somalense] gi|394830889|ref|YP_006503527.1|
photosystem I assembly protein Ycf3 (chloroplast)
[Gossypium areysianum] gi|394830976|ref|YP_006503610.1|
photosystem I assembly protein Ycf3 (chloroplast)
[Gossypium robinsonii] gi|570758969|ref|YP_008992551.1|
hypothetical chloroplast RF34 (chloroplast) [Gossypium
bickii] gi|570759057|ref|YP_008992896.1| hypothetical
chloroplast RF34 (chloroplast) [Gossypium sturtianum]
gi|570759577|ref|YP_008992638.1| hypothetical
chloroplast RF34 (chloroplast) [Gossypium herbaceum]
gi|570759663|ref|YP_008992724.1| hypothetical
chloroplast RF34 (chloroplast) [Gossypium longicalyx]
gi|570879914|ref|YP_008992810.1| hypothetical
chloroplast RF34 (chloroplast) [Gossypium stocksii]
gi|122226162|sp|Q2L906.1|YCF3_GOSHI RecName:
Full=Photosystem I assembly protein Ycf3
gi|125991253|sp|A0ZZ36.1|YCF3_GOSBA RecName:
Full=Photosystem I assembly protein Ycf3
gi|85687417|gb|ABC73629.1| photosystem I assembly
protein ycf3 [Gossypium hirsutum]
gi|119224862|dbj|BAF41248.1| PSI accumulation protein
[Gossypium barbadense] gi|290775793|gb|ADD62289.1|
hypothetical chloroplast RF34 [Gossypium thurberi]
gi|318084317|gb|ADV38793.1| photosystem I assembly
protein Ycf3 (chloroplast) [Gossypium arboreum]
gi|318084400|gb|ADV38875.1| photosystem I assembly
protein Ycf3 (chloroplast) [Gossypium darwinii]
gi|318084485|gb|ADV38959.1| photosystem I assembly
protein Ycf3 (chloroplast) [Gossypium herbaceum subsp.
africanum] gi|318084569|gb|ADV39042.1| photosystem I
assembly protein Ycf3 (chloroplast) [Gossypium
mustelinum] gi|318084651|gb|ADV39123.1| photosystem I
assembly protein Ycf3 (chloroplast) [Gossypium
raimondii] gi|318084737|gb|ADV39208.1| photosystem I
assembly protein Ycf3 (chloroplast) [Gossypium
tomentosum] gi|326457128|gb|ADZ74391.1| hypothetical
chloroplast RF34 [Gossypium bickii]
gi|326457216|gb|ADZ74478.1| hypothetical chloroplast
RF34 [Gossypium herbaceum] gi|326457302|gb|ADZ74563.1|
hypothetical chloroplast RF34 [Gossypium longicalyx]
gi|326457389|gb|ADZ74649.1| hypothetical chloroplast
RF34 [Gossypium stocksii] gi|326457477|gb|ADZ74736.1|
hypothetical chloroplast RF34 [Gossypium sturtianum]
gi|329317072|gb|AEB90431.1| photosystem I assembly
protein Ycf3 (chloroplast) [Gossypium gossypioides]
gi|329317156|gb|AEB90514.1| photosystem I assembly
protein Ycf3 (chloroplast) [Gossypium hirsutum]
gi|329317240|gb|AEB90597.1| photosystem I assembly
protein Ycf3 (chloroplast) [Gossypium hirsutum]
gi|329317324|gb|AEB90680.1| photosystem I assembly
protein Ycf3 (chloroplast) [Gossypium barbadense]
gi|329317408|gb|AEB90763.1| photosystem I assembly
protein Ycf3 (chloroplast) [Gossypium barbadense]
gi|329317492|gb|AEB90846.1| photosystem I assembly
protein Ycf3 (chloroplast) [Gossypium barbadense]
gi|335354332|gb|AEH42952.1| photosystem I assembly
protein Ycf3 [Gossypium incanum]
gi|335354416|gb|AEH43035.1| photosystem I assembly
protein Ycf3 [Gossypium somalense]
gi|335354584|gb|AEH43201.1| photosystem I assembly
protein Ycf3 (chloroplast) [Gossypium areysianum]
gi|335354668|gb|AEH43284.1| photosystem I assembly
protein Ycf3 [Gossypium robinsonii]
Length = 168
Score = 91.7 bits (226), Expect = 9e-17
Identities = 45/48 (93%), Positives = 46/48 (95%)
Frame = +2
Query: 77 MPRSQINANFIDKTFSIVANILLRIIPTTSGEKKAFTYYRDGMLAQSE 220
MPRSQIN NFIDKTFSIVANILLRIIPTTSGEK+AFTYYRDGM AQSE
Sbjct: 1 MPRSQINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGMSAQSE 48
>ref|YP_006503444.1| photosystem I assembly protein Ycf3 (chloroplast) [Gossypium
capitis-viridis] gi|570758881|ref|YP_008992465.1|
hypothetical chloroplast RF34 (chloroplast) [Gossypium
anomalum] gi|326457040|gb|ADZ74304.1| hypothetical
chloroplast RF34 [Gossypium anomalum]
gi|335354500|gb|AEH43118.1| photosystem I assembly
protein Ycf3 (chloroplast) [Gossypium capitis-viridis]
Length = 168
Score = 91.7 bits (226), Expect = 9e-17
Identities = 45/48 (93%), Positives = 46/48 (95%)
Frame = +2
Query: 77 MPRSQINANFIDKTFSIVANILLRIIPTTSGEKKAFTYYRDGMLAQSE 220
MPRSQIN NFIDKTFSIVANILLRIIPTTSGEK+AFTYYRDGM AQSE
Sbjct: 1 MPRSQINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGMSAQSE 48
>ref|YP_784474.1| photosystem I assembly protein ycf3 [Piper cenocladum]
gi|122164361|sp|Q06GQ9.1|YCF3_PIPCE RecName:
Full=Photosystem I assembly protein Ycf3
gi|112253752|gb|ABI14473.1| photosystem I assembly
protein ycf3 [Piper cenocladum]
Length = 168
Score = 91.7 bits (226), Expect = 9e-17
Identities = 45/48 (93%), Positives = 46/48 (95%)
Frame = +2
Query: 77 MPRSQINANFIDKTFSIVANILLRIIPTTSGEKKAFTYYRDGMLAQSE 220
MPRSQIN NFIDKTFSIVANILLRIIPTTSGEK+AFTYYRDGM AQSE
Sbjct: 1 MPRSQINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGMSAQSE 48
>sp|P27324.2|YCF3_MAIZE RecName: Full=Photosystem I assembly protein Ycf3; AltName:
Full=IRF170 gi|93140420|sp|P0C160.1|YCF3_SACHY RecName:
Full=Photosystem I assembly protein Ycf3
Length = 170
Score = 91.3 bits (225), Expect = 1e-16
Identities = 44/48 (91%), Positives = 47/48 (97%)
Frame = +2
Query: 77 MPRSQINANFIDKTFSIVANILLRIIPTTSGEKKAFTYYRDGMLAQSE 220
MPRS+IN NFIDKTFSIVANILL+IIPTTSGEK+AFTYYRDGMLAQSE
Sbjct: 1 MPRSRINGNFIDKTFSIVANILLQIIPTTSGEKRAFTYYRDGMLAQSE 48
>gb|AAB30283.2| IRF170 [Zea mays subsp. mays]
Length = 170
Score = 91.3 bits (225), Expect = 1e-16
Identities = 44/48 (91%), Positives = 47/48 (97%)
Frame = +2
Query: 77 MPRSQINANFIDKTFSIVANILLRIIPTTSGEKKAFTYYRDGMLAQSE 220
MPRS+IN NFIDKTFSIVANILL+IIPTTSGEK+AFTYYRDGMLAQSE
Sbjct: 1 MPRSRINGNFIDKTFSIVANILLQIIPTTSGEKRAFTYYRDGMLAQSE 48