BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00039331
         (368 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006432869.1| hypothetical protein CICLE_v10000274mg [Citr...    79   5e-13
ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containi...    75   1e-11
emb|CBI29222.3| unnamed protein product [Vitis vinifera]               75   1e-11
ref|XP_004249905.1| PREDICTED: pentatricopeptide repeat-containi...    73   3e-11
ref|XP_006351033.1| PREDICTED: pentatricopeptide repeat-containi...    70   2e-10
gb|EMJ18352.1| hypothetical protein PRUPE_ppa001463mg [Prunus pe...    70   3e-10
ref|XP_002303480.2| pentatricopeptide repeat-containing family p...    64   2e-08
ref|XP_003628993.1| Pentatricopeptide repeat-containing protein ...    62   8e-08
gb|AHB18408.1| pentatricopeptide repeat-containing protein [Goss...    60   4e-07
ref|XP_004509525.1| PREDICTED: pentatricopeptide repeat-containi...    60   4e-07
ref|XP_003548529.2| PREDICTED: pentatricopeptide repeat-containi...    58   1e-06
ref|XP_006850872.1| hypothetical protein AMTR_s00025p00148960 [A...    56   4e-06

>ref|XP_006432869.1| hypothetical protein CICLE_v10000274mg [Citrus clementina]
           gi|568835123|ref|XP_006471629.1| PREDICTED:
           pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like isoform X1 [Citrus sinensis]
           gi|568835125|ref|XP_006471630.1| PREDICTED:
           pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like isoform X2 [Citrus sinensis]
           gi|557534991|gb|ESR46109.1| hypothetical protein
           CICLE_v10000274mg [Citrus clementina]
          Length = 833

 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 51/123 (41%), Positives = 70/123 (56%), Gaps = 6/123 (4%)
 Frame = -2

Query: 367 SCAFRFTPRSYAILLHSLLRSNLTDASXXXXXXXLDPRSTVALFLDDPDQRFREIVLAVV 188
           SC FRFT RSY +L+  LL SNL   +       +D +  V L+  +P  R  EI   +V
Sbjct: 110 SCNFRFTVRSYCLLIRLLLFSNLLSPARLLLIRLIDGKMPV-LYASNPSIRHIEIASQMV 168

Query: 187 D----TAPSRDSPAFDLLVHLCCTQLRSDDGG--IVVFGIITGQGLCPSLKTCNFLMSSL 26
           D    + P+      DLLVH+ CTQ ++   G  I VF I + +G+ PSLKTCNFL++SL
Sbjct: 169 DLNVTSEPALGVQIADLLVHVYCTQFKNLGFGYAIDVFSIFSNKGIFPSLKTCNFLLNSL 228

Query: 25  TKS 17
            K+
Sbjct: 229 VKA 231


>ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 48/128 (37%), Positives = 67/128 (52%), Gaps = 6/128 (4%)
 Frame = -2

Query: 367 SCAFRFTPRSYAILLHSLLRSNLTDASXXXXXXXLDPRSTVALFLDDPDQRFREIVLAVV 188
           SC FRFT RSY +L+ SL+ S     +       +D +  V     DP  R  EI  A+ 
Sbjct: 172 SCGFRFTLRSYCVLMRSLIVSGFVSPARLLLIRLIDRKLPV--LFGDPKNRHIEIASAMA 229

Query: 187 DTAPSRDS----PAFDLLVHLCCTQLRSDD--GGIVVFGIITGQGLCPSLKTCNFLMSSL 26
           D     +S     A DLL+H+ CTQ R+      I VF  +  +G+ P++KTC FL+SSL
Sbjct: 230 DLNEVGESGVAVAAVDLLIHVYCTQFRNVGFRNAIGVFRFLANKGVFPTVKTCTFLLSSL 289

Query: 25  TKS*NLEE 2
            K+  LE+
Sbjct: 290 VKANELEK 297


>emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 48/128 (37%), Positives = 67/128 (52%), Gaps = 6/128 (4%)
 Frame = -2

Query: 367 SCAFRFTPRSYAILLHSLLRSNLTDASXXXXXXXLDPRSTVALFLDDPDQRFREIVLAVV 188
           SC FRFT RSY +L+ SL+ S     +       +D +  V     DP  R  EI  A+ 
Sbjct: 105 SCGFRFTLRSYCVLMRSLIVSGFVSPARLLLIRLIDRKLPV--LFGDPKNRHIEIASAMA 162

Query: 187 DTAPSRDS----PAFDLLVHLCCTQLRSDD--GGIVVFGIITGQGLCPSLKTCNFLMSSL 26
           D     +S     A DLL+H+ CTQ R+      I VF  +  +G+ P++KTC FL+SSL
Sbjct: 163 DLNEVGESGVAVAAVDLLIHVYCTQFRNVGFRNAIGVFRFLANKGVFPTVKTCTFLLSSL 222

Query: 25  TKS*NLEE 2
            K+  LE+
Sbjct: 223 VKANELEK 230


>ref|XP_004249905.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Solanum lycopersicum]
          Length = 839

 Score = 73.2 bits (178), Expect = 3e-11
 Identities = 49/122 (40%), Positives = 67/122 (54%), Gaps = 6/122 (4%)
 Frame = -2

Query: 367 SCAFRFTPRSYAILLHSLLRSNLTDASXXXXXXXLDPRSTVALFLDDPDQRFREIVLAVV 188
           +C+F FT RSY  L+  L+ SN  DA        L      ALF D   Q+  E+ +++ 
Sbjct: 118 TCSFSFTVRSYCTLVRLLIASN-HDAPARLLLIRLIDGKLPALF-DSLQQKHVEVAVSLA 175

Query: 187 DTAPSRDSPA----FDLLVHLCCTQLRSD--DGGIVVFGIITGQGLCPSLKTCNFLMSSL 26
           + +   D       FDLL+HLCCTQ +S   D  + VF  +  +G+ PSLKTCNFL+SSL
Sbjct: 176 ELSGVSDFGVAVRTFDLLLHLCCTQFKSVGFDAALDVFRSLASRGVYPSLKTCNFLLSSL 235

Query: 25  TK 20
            K
Sbjct: 236 VK 237


>ref|XP_006351033.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Solanum tuberosum]
          Length = 928

 Score = 70.5 bits (171), Expect = 2e-10
 Identities = 46/122 (37%), Positives = 67/122 (54%), Gaps = 6/122 (4%)
 Frame = -2

Query: 367 SCAFRFTPRSYAILLHSLLRSNLTDASXXXXXXXLDPRSTVALFLDDPDQRFREIVLAVV 188
           +C F F+ RSY  LL  L+ SN    +       +D +   ALF D   Q+  E+ +++ 
Sbjct: 207 TCGFSFSVRSYCTLLRLLVASNHDVPARLLLIRLIDGKLP-ALF-DTSQQKHVEVAVSLA 264

Query: 187 DTAPSRDSPA----FDLLVHLCCTQLRSD--DGGIVVFGIITGQGLCPSLKTCNFLMSSL 26
           + +   D       FDLL+HLCCTQ ++   D  + VF  +  +G+ PSLKTCNFL+SSL
Sbjct: 265 ELSGVSDFGVAVRTFDLLLHLCCTQFKNVGFDAALDVFRSLASRGVYPSLKTCNFLLSSL 324

Query: 25  TK 20
            K
Sbjct: 325 VK 326


>gb|EMJ18352.1| hypothetical protein PRUPE_ppa001463mg [Prunus persica]
          Length = 821

 Score = 70.1 bits (170), Expect = 3e-10
 Identities = 45/128 (35%), Positives = 70/128 (54%), Gaps = 6/128 (4%)
 Frame = -2

Query: 367 SCAFRFTPRSYAILLHSLLRSNLTDASXXXXXXXLDPRSTVALFLDDPDQRFREIVLAVV 188
           S  F+FT RS+ +L+  L+ SNL   +       +D    V +   + +QR  EI +A++
Sbjct: 109 SFKFQFTVRSFCVLVRLLILSNLVSPARLLLIRLID--GNVPVLYANHNQRHMEIAIAML 166

Query: 187 D----TAPSRDSPAFDLLVHLCCTQLRSDDGGIVV--FGIITGQGLCPSLKTCNFLMSSL 26
           D    +       A DLL+H+ CTQ ++   G  +  F I + +G+ PSLKTCNFL+SSL
Sbjct: 167 DLNTVSTQGLGVQALDLLIHVYCTQFKNMGFGYAIDAFVIFSKKGVFPSLKTCNFLLSSL 226

Query: 25  TKS*NLEE 2
            K+  L +
Sbjct: 227 VKANELHK 234


>ref|XP_002303480.2| pentatricopeptide repeat-containing family protein [Populus
           trichocarpa] gi|550342907|gb|EEE78459.2|
           pentatricopeptide repeat-containing family protein
           [Populus trichocarpa]
          Length = 842

 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 44/128 (34%), Positives = 66/128 (51%), Gaps = 6/128 (4%)
 Frame = -2

Query: 367 SCAFRFTPRSYAILLHSLLRSNLTDASXXXXXXXLDPRSTVALFLDDPDQRFREIVLAVV 188
           +C FRFT RSY +L+H L+ ++L   +       +D +   A +  + + R  EI   + 
Sbjct: 119 TCKFRFTARSYCVLIHLLVGNDLLSPARLLLIRLIDGK-VPAFYARNFESRHFEIAQIMA 177

Query: 187 DT----APSRDSPAFDLLVHLCCTQLRSDDGGIV--VFGIITGQGLCPSLKTCNFLMSSL 26
           D      P       DLLVH+  TQ +    G    VF ++  +GL PSLKTC FL+SSL
Sbjct: 178 DFNLVFEPVIGVKIADLLVHVYSTQFKHLGFGFAADVFSLLAKKGLFPSLKTCTFLLSSL 237

Query: 25  TKS*NLEE 2
            K+  L++
Sbjct: 238 VKANELKK 245


>ref|XP_003628993.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355523015|gb|AET03469.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 819

 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 43/121 (35%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
 Frame = -2

Query: 358 FRFTPRSYAILLHSLLRSNLTDASXXXXXXXLDPRSTVALFLDDPDQRFREIVLAVVDTA 179
           FRFT RSY IL+  LL SN    +       ++  +   L     D R  EI  A ++  
Sbjct: 107 FRFTVRSYCILIRLLLASNHIPRAKFTLKRLIEGNANTPL--KKTDARLSEIASAFLELG 164

Query: 178 PSRDSPAFDLLVHLCCTQLR--SDDGGIVVFGIITGQGLCPSLKTCNFLMSSLTKS*NLE 5
             R     DLL+++ C+Q +          F + T +G+ PSLK+CNFLMSSL KS  L 
Sbjct: 165 -ERSHGELDLLIYILCSQFQHLGFHWAFDTFMLFTSKGVFPSLKSCNFLMSSLVKSNELH 223

Query: 4   E 2
           +
Sbjct: 224 K 224


>gb|AHB18408.1| pentatricopeptide repeat-containing protein [Gossypium hirsutum]
          Length = 846

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
 Frame = -2

Query: 358 FRFTPRSYAILLHSLLRSNLTDASXXXXXXXLDPRSTVALFLDDPDQRFREIVLAVVDTA 179
           FRFT RSY IL+  LL SN + A+       +D +  +    + P     +I +A+ D  
Sbjct: 138 FRFTLRSYYILILLLLLSNNSSAARLLLIRLIDGKLPLFSPNNPPTVNHIQIAIALADLN 197

Query: 178 PSRDSPA-FDLLVHLCCTQLRSDDG--GIVVFGIITGQGLCPSLKTCNFLMSSLTKS 17
            S    A  DLL+HL CTQ ++      I VF  +  +G+ PS KTCNF ++SL K+
Sbjct: 198 TSFKGVAGVDLLLHLYCTQFKNVGFTYAIDVFFTLAYKGIFPSTKTCNFFLNSLLKA 254


>ref|XP_004509525.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like isoform X1 [Cicer arietinum]
           gi|502153968|ref|XP_004509526.1| PREDICTED:
           pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like isoform X2 [Cicer arietinum]
           gi|502153970|ref|XP_004509527.1| PREDICTED:
           pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like isoform X3 [Cicer arietinum]
           gi|502153972|ref|XP_004509528.1| PREDICTED:
           pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like isoform X4 [Cicer arietinum]
           gi|502153974|ref|XP_004509529.1| PREDICTED:
           pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like isoform X5 [Cicer arietinum]
           gi|502153976|ref|XP_004509530.1| PREDICTED:
           pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like isoform X6 [Cicer arietinum]
           gi|502153978|ref|XP_004509531.1| PREDICTED:
           pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like isoform X7 [Cicer arietinum]
           gi|502153980|ref|XP_004509532.1| PREDICTED:
           pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like isoform X8 [Cicer arietinum]
           gi|502153982|ref|XP_004509533.1| PREDICTED:
           pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like isoform X9 [Cicer arietinum]
           gi|502153984|ref|XP_004509534.1| PREDICTED:
           pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like isoform X10 [Cicer arietinum]
          Length = 835

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 41/123 (33%), Positives = 61/123 (49%), Gaps = 4/123 (3%)
 Frame = -2

Query: 358 FRFTPRSYAILLHSLLRSNLTDASXXXXXXXLDPRSTVALFLDDPDQRFREIVLAVVDTA 179
           F FT RSY +L+  LL SN    +       +D   +  L   + D R  E+  + ++ +
Sbjct: 115 FCFTVRSYCLLIRLLLCSNHLPRARFFMKRLIDGNVSTPLL--NRDDRLSEMASSFLELS 172

Query: 178 --PSRDSPAFDLLVHLCCTQLR--SDDGGIVVFGIITGQGLCPSLKTCNFLMSSLTKS*N 11
               R     DLL+H+ C+Q +         +F + T  G+ PSLKTCNFL+SSL KS  
Sbjct: 173 RLTERSHGELDLLLHILCSQFQHLGFHWAFDIFTLFTSNGVFPSLKTCNFLLSSLVKSNE 232

Query: 10  LEE 2
           L +
Sbjct: 233 LHK 235


>ref|XP_003548529.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Glycine max]
          Length = 840

 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 42/132 (31%), Positives = 62/132 (46%), Gaps = 11/132 (8%)
 Frame = -2

Query: 364 CAFRFTPRSYAILLHSLLRSNLTDASXXXXXXXLDPR------STVALFLDDPDQRFREI 203
           C FRFT RSY +LL SLL  +    +       +D         T   F D    R REI
Sbjct: 116 CNFRFTVRSYCLLLRSLLADSFVPRARFLLARLIDGHVPTWSSKTTTSFHD----RLREI 171

Query: 202 VLAVVDTAPSRDSPAF---DLLVHLCCTQLR--SDDGGIVVFGIITGQGLCPSLKTCNFL 38
             ++++     D       DLL+H+ C+Q +         +F + + +G+ P LKTCN L
Sbjct: 172 ASSMLELNQGSDEQRLGELDLLLHILCSQFKCLGSRCAFDIFVMFSKRGVFPCLKTCNLL 231

Query: 37  MSSLTKS*NLEE 2
           +SSL K+  L +
Sbjct: 232 LSSLVKANELHK 243


>ref|XP_006850872.1| hypothetical protein AMTR_s00025p00148960 [Amborella trichopoda]
           gi|548854543|gb|ERN12453.1| hypothetical protein
           AMTR_s00025p00148960 [Amborella trichopoda]
          Length = 839

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
 Frame = -2

Query: 349 TPRSYAILLHSLLRSNLTDASXXXXXXXLDPRSTVALFLDDPDQRFREIVLAVVDT-APS 173
           T  S ++ +H+L RS  T+++       +D +      +  P+    +I  A+V T  P 
Sbjct: 102 TAHSLSVFIHTLSRSYATNSARLILIRLIDRKFPNLFPIPCPEPHL-QISRALVKTHLPG 160

Query: 172 RDSPAFDLLVHLCCTQLRSDDGGIVVFGIITGQGLCPSLKTCNFLMSSLTKS 17
             +P  DLL+H+ C+Q ++       F I    G  PSLKTCNFL++SL KS
Sbjct: 161 SSAP--DLLIHVYCSQFKAPLQAFEAFRIFLSLGYVPSLKTCNFLLNSLVKS 210