BLASTX nr result

ID: Zingiber23_contig00039268 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00039268
         (617 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006342981.1| PREDICTED: uncharacterized protein LOC102587...    40   7e-06
gb|EOY27130.1| Late embryogenesis abundant hydroxyproline-rich g...    47   7e-06

>ref|XP_006342981.1| PREDICTED: uncharacterized protein LOC102587456 [Solanum tuberosum]
          Length = 267

 Score = 40.4 bits (93), Expect(3) = 7e-06
 Identities = 18/42 (42%), Positives = 27/42 (64%)
 Frame = -3

Query: 543 DLNVTSCNSNKKLAYHYDPIAFSILSDGVNLNDGPFHAFVQD 418
           +L V + N NKK+++ YDPI  S  S+ V++ DG   AF+ D
Sbjct: 126 NLTVVARNPNKKISFFYDPINISFNSNDVDIGDGSLPAFMHD 167



 Score = 27.7 bits (60), Expect(3) = 7e-06
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -2

Query: 322 VEMEMETKADVNIARLKTKRIDKKVLC 242
           +E++++TK  V +  LKTK++  +V C
Sbjct: 205 LEIKLDTKVKVKVGSLKTKKVGIRVKC 231



 Score = 26.9 bits (58), Expect(3) = 7e-06
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 192 CTVKLRLKIWKW 157
           C V LR+KIWKW
Sbjct: 254 CKVDLRIKIWKW 265


>gb|EOY27130.1| Late embryogenesis abundant hydroxyproline-rich glycoprotein
           family, putative [Theobroma cacao]
          Length = 256

 Score = 47.0 bits (110), Expect(3) = 7e-06
 Identities = 22/44 (50%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
 Frame = -3

Query: 552 TFLDLNVTSCNSNKKLAYHYDPIAFSIL-SDGVNLNDGPFHAFV 424
           T ++LNVT+ N NKKL Y YDPI  S++ +D +++ DG F +FV
Sbjct: 112 TNINLNVTAKNPNKKLVYTYDPITISLITNDDIDIGDGSFGSFV 155



 Score = 26.9 bits (58), Expect(3) = 7e-06
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 192 CTVKLRLKIWKW 157
           C V LR+KIWKW
Sbjct: 243 CKVDLRIKIWKW 254



 Score = 21.2 bits (43), Expect(3) = 7e-06
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = -2

Query: 322 VEMEMETKADVNIARLKTKRIDKKVLC 242
           +++++ TK    +  LKT ++  +V+C
Sbjct: 194 LKIKLVTKVKAKMGALKTPKLGIRVIC 220


Top