BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00039242
         (503 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI31981.3| unnamed protein product [Vitis vinifera]               67   3e-09
ref|XP_002271313.1| PREDICTED: pentatricopeptide repeat-containi...    67   3e-09
tpg|DAA63730.1| TPA: hypothetical protein ZEAMMB73_596066 [Zea m...    63   5e-08
gb|EOY01970.1| Pentatricopeptide repeat (PPR) superfamily protei...    60   4e-07
ref|XP_002461069.1| hypothetical protein SORBIDRAFT_02g040130 [S...    60   4e-07
ref|XP_004959846.1| PREDICTED: pentatricopeptide repeat-containi...    59   5e-07
ref|XP_004298437.1| PREDICTED: pentatricopeptide repeat-containi...    58   1e-06
ref|NP_174012.1| pentatricopeptide repeat-containing protein [Ar...    57   3e-06
ref|XP_003593920.1| Pentatricopeptide repeat-containing protein ...    57   3e-06
ref|XP_003559925.1| PREDICTED: pentatricopeptide repeat-containi...    56   4e-06
ref|XP_006415976.1| hypothetical protein EUTSA_v10009468mg [Eutr...    55   7e-06
gb|EMJ23502.1| hypothetical protein PRUPE_ppa003920mg [Prunus pe...    55   7e-06
ref|XP_002522400.1| pentatricopeptide repeat-containing protein,...    55   7e-06

>emb|CBI31981.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score = 66.6 bits (161), Expect = 3e-09
 Identities = 49/146 (33%), Positives = 66/146 (45%)
 Frame = -2

Query: 439 HACMLKTGLHLLPFPVXXXXXXXXXXXXXXXARSIFDCIASPCLFHHTAVLRSLSSAPGA 260
           H  M+KTGL  +PF +                 SIF+ I SP LF    +LR  S +   
Sbjct: 51  HGSMVKTGLVNVPFTLSKLLASSIQDTDYAA--SIFNQIPSPNLFMFNTMLRGYSISHHP 108

Query: 259 RSVADAIALFRSLHASPGLALNQFAFIPTLKVXXXXXXXXXXXXXXXXXXXXXXXLYVNV 80
           +    A  +F+ L A   + L+QF+FIPTLK                        L+ NV
Sbjct: 109 KQ---AFVVFKGLRAQQ-MILDQFSFIPTLKACARELAYETGQGIHGVVVRSGHGLFTNV 164

Query: 79  RNTLIHLYCRCGRVSDDGLYLFDEMP 2
           +N L+H YC CGR+  D   LFDE+P
Sbjct: 165 KNALLHFYCVCGRIG-DAHQLFDEIP 189


>ref|XP_002271313.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26900,
           mitochondrial-like [Vitis vinifera]
          Length = 597

 Score = 66.6 bits (161), Expect = 3e-09
 Identities = 49/146 (33%), Positives = 66/146 (45%)
 Frame = -2

Query: 439 HACMLKTGLHLLPFPVXXXXXXXXXXXXXXXARSIFDCIASPCLFHHTAVLRSLSSAPGA 260
           H  M+KTGL  +PF +                 SIF+ I SP LF    +LR  S +   
Sbjct: 51  HGSMVKTGLVNVPFTLSKLLASSIQDTDYAA--SIFNQIPSPNLFMFNTMLRGYSISHHP 108

Query: 259 RSVADAIALFRSLHASPGLALNQFAFIPTLKVXXXXXXXXXXXXXXXXXXXXXXXLYVNV 80
           +    A  +F+ L A   + L+QF+FIPTLK                        L+ NV
Sbjct: 109 KQ---AFVVFKGLRAQQ-MILDQFSFIPTLKACARELAYETGQGIHGVVVRSGHGLFTNV 164

Query: 79  RNTLIHLYCRCGRVSDDGLYLFDEMP 2
           +N L+H YC CGR+  D   LFDE+P
Sbjct: 165 KNALLHFYCVCGRIG-DAHQLFDEIP 189


>tpg|DAA63730.1| TPA: hypothetical protein ZEAMMB73_596066 [Zea mays]
          Length = 552

 Score = 62.8 bits (151), Expect = 5e-08
 Identities = 41/117 (35%), Positives = 57/117 (48%), Gaps = 4/117 (3%)
 Frame = -2

Query: 340 SIFDCIASPCLFHHTAVLRSLSSAPGARSVADAIALFRSLHASPGLALNQFAFIPTL--- 170
           S+F  +  P LFHHTA+LR+LSS P A S+A ++++  S  A     LN+FAF P L   
Sbjct: 56  SLFAAVPRPTLFHHTAILRALSSCPSATSLAASLSVLASARARLP-ELNEFAFQPLLALC 114

Query: 169 -KVXXXXXXXXXXXXXXXXXXXXXXXLYVNVRNTLIHLYCRCGRVSDDGLYLFDEMP 2
            K+                         V++RN L H YC  G ++ D   +F EMP
Sbjct: 115 AKIPNDAEAASIGKQVHALVLQYGFLDIVSLRNVLCHFYCSSGSMA-DARRMFAEMP 170


>gb|EOY01970.1| Pentatricopeptide repeat (PPR) superfamily protein, putative
           [Theobroma cacao]
          Length = 592

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 45/148 (30%), Positives = 67/148 (45%), Gaps = 2/148 (1%)
 Frame = -2

Query: 439 HACMLKTGLHLLPFPVXXXXXXXXXXXXXXXARSIFDCIASPCLFHHTAVLR--SLSSAP 266
           H  +++TGL   PF +               A SI   I +P LF + ++LR  S+S  P
Sbjct: 45  HGYVIRTGLDHDPF-ILSTLLVASSLLDVEYAASIIKQIQNPNLFMYNSILRGYSISDDP 103

Query: 265 GARSVADAIALFRSLHASPGLALNQFAFIPTLKVXXXXXXXXXXXXXXXXXXXXXXXLYV 86
                  A ++F +L A  G+ L+QF+F+ TLK                         ++
Sbjct: 104 N-----QAFSVFNNLRAKDGILLDQFSFVTTLKACSREFAIFNGQTIHGLALRSGHVFFI 158

Query: 85  NVRNTLIHLYCRCGRVSDDGLYLFDEMP 2
           NV+N L+HLY  CGR+      LFDE+P
Sbjct: 159 NVKNALLHLYSVCGRIF-YAHTLFDEIP 185


>ref|XP_002461069.1| hypothetical protein SORBIDRAFT_02g040130 [Sorghum bicolor]
           gi|241924446|gb|EER97590.1| hypothetical protein
           SORBIDRAFT_02g040130 [Sorghum bicolor]
          Length = 552

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 39/117 (33%), Positives = 57/117 (48%), Gaps = 4/117 (3%)
 Frame = -2

Query: 340 SIFDCIASPCLFHHTAVLRSLSSAPGARSVADAIALFRSLHASPGLALNQFAFIPTL--- 170
           S+F  +  P LFHHTAVLR+LSS P   S++ ++++  S  A     L++FAF P L   
Sbjct: 56  SLFAAVPRPTLFHHTAVLRALSSCPSVASLSASLSVLASARARLP-ELDEFAFQPLLALC 114

Query: 169 -KVXXXXXXXXXXXXXXXXXXXXXXXLYVNVRNTLIHLYCRCGRVSDDGLYLFDEMP 2
            K+                         V++RN L H YC  G ++ D   +F+EMP
Sbjct: 115 AKMPSDAEAASVGKQVHALVLRYGFLDVVSLRNVLCHFYCSSGNMA-DSRRMFEEMP 170


>ref|XP_004959846.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26900,
           mitochondrial-like [Setaria italica]
          Length = 553

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 39/116 (33%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
 Frame = -2

Query: 340 SIFDCIASPCLFHHTAVLRSLSSAPGARSVADAIALFRSLHASPGLALNQFAFIPTL--- 170
           S+F  +  P LFHHTA+LR+LS+   A S+A ++++     A   + L++FAF P L   
Sbjct: 56  SLFTAVPRPTLFHHTALLRALSTCASAASLAASLSILAFARARLPV-LDEFAFQPLLALC 114

Query: 169 -KVXXXXXXXXXXXXXXXXXXXXXXXLYVNVRNTLIHLYCRCGRVSDDGLYLFDEM 5
            KV                         V++RN L H YC CG ++ D   +FDEM
Sbjct: 115 AKVPDDAEAASIGKQLHALVLRYGFLDVVSLRNVLCHFYCNCGGMA-DARRVFDEM 169


>ref|XP_004298437.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26900,
           mitochondrial-like [Fragaria vesca subsp. vesca]
          Length = 571

 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 47/148 (31%), Positives = 64/148 (43%), Gaps = 2/148 (1%)
 Frame = -2

Query: 439 HACMLKTGLHLLPFPVXXXXXXXXXXXXXXXARSIFDCIASPCLFHHTAVLR--SLSSAP 266
           H  ++KTGL   PF                 A SIF  I +P LF    +LR  S+S  P
Sbjct: 40  HGSIVKTGLDHNPF--FLSKLLASSIHHIQYAASIFSHIQNPNLFMFNTLLRAYSISGEP 97

Query: 265 GARSVADAIALFRSLHASPGLALNQFAFIPTLKVXXXXXXXXXXXXXXXXXXXXXXXLYV 86
                  A  +F  L A  G+ L+QF+FI TLK                         ++
Sbjct: 98  NK-----AFLVFNDLRAR-GIVLDQFSFITTLKACARELAIETGQGIHGVVVRSGHGGFI 151

Query: 85  NVRNTLIHLYCRCGRVSDDGLYLFDEMP 2
            V+NTL+H YC  G++ +D  +LFDE P
Sbjct: 152 GVKNTLLHFYCVSGKI-EDAHHLFDEFP 178


>ref|NP_174012.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75216976|sp|Q9ZVG8.1|PPR60_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g26900, mitochondrial; Flags: Precursor
           gi|4262179|gb|AAD14496.1| Hypothetical protein
           [Arabidopsis thaliana] gi|332192635|gb|AEE30756.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 572

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 46/148 (31%), Positives = 67/148 (45%), Gaps = 2/148 (1%)
 Frame = -2

Query: 439 HACMLKTGLHLLPFPVXXXXXXXXXXXXXXXARSIFDCIASPCLFHHTAVLR--SLSSAP 266
           H  M+KTGL    F V               + SIF+ +++  LF    ++R  S+S  P
Sbjct: 48  HGYMVKTGLDKDDFAVSKLLAFSSVLDIRYAS-SIFEHVSNTNLFMFNTMIRGYSISDEP 106

Query: 265 GARSVADAIALFRSLHASPGLALNQFAFIPTLKVXXXXXXXXXXXXXXXXXXXXXXXLYV 86
                  A ++F  L A  GL L++F+FI TLK                        ++ 
Sbjct: 107 ER-----AFSVFNQLRAK-GLTLDRFSFITTLKSCSRELCVSIGEGLHGIALRSGFMVFT 160

Query: 85  NVRNTLIHLYCRCGRVSDDGLYLFDEMP 2
           ++RN LIH YC CG++S D   +FDEMP
Sbjct: 161 DLRNALIHFYCVCGKIS-DARKVFDEMP 187


>ref|XP_003593920.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355482968|gb|AES64171.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 801

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 41/146 (28%), Positives = 62/146 (42%)
 Frame = -2

Query: 439 HACMLKTGLHLLPFPVXXXXXXXXXXXXXXXARSIFDCIASPCLFHHTAVLRSLSSAPGA 260
           H  M+KT L  +PF +                 +IF CI +P LF +  +LR  S +  +
Sbjct: 33  HCYMIKTSLTNVPFTLSKLLAASIFDMNYAS--TIFTCIQNPNLFMYNTMLRGYSVSNSS 90

Query: 259 RSVADAIALFRSLHASPGLALNQFAFIPTLKVXXXXXXXXXXXXXXXXXXXXXXXLYVNV 80
                A+ +F  L  S G  L+ F+FI  +K                         +V++
Sbjct: 91  NK---ALPIFNKLRNS-GNGLDPFSFIAVMKACGRSFEVGFGRGVHGIVVKSGNRFFVDL 146

Query: 79  RNTLIHLYCRCGRVSDDGLYLFDEMP 2
            NT++  YC CGR+ DD   +FDE P
Sbjct: 147 NNTILQFYCVCGRI-DDARKVFDECP 171


>ref|XP_003559925.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26900,
           mitochondrial-like [Brachypodium distachyon]
          Length = 560

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 42/119 (35%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
 Frame = -2

Query: 340 SIFDCIASPCLFHHTAVLRSLSSAPGARSVADAIALFRSLHASPGL--ALNQFAFIPTL- 170
           S+F  I  P LFHHTA+LR+LS+AP +   A A A    L ++     AL++FAF P + 
Sbjct: 61  SLFAAIPHPTLFHHTALLRALSAAPSSAFYASAAASLDVLASARARLPALDEFAFQPLVA 120

Query: 169 ---KVXXXXXXXXXXXXXXXXXXXXXXXLYVNVRNTLIHLYCRCGRVSDDGLYLFDEMP 2
              K                          V++ N L HLYC  G +  D   LFDEMP
Sbjct: 121 LCAKNPRDGAAGELGRQVHALVVRYGFLSVVSLGNVLCHLYCSLGSMG-DARRLFDEMP 178


>ref|XP_006415976.1| hypothetical protein EUTSA_v10009468mg [Eutrema salsugineum]
           gi|557093747|gb|ESQ34329.1| hypothetical protein
           EUTSA_v10009468mg [Eutrema salsugineum]
          Length = 580

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 44/146 (30%), Positives = 62/146 (42%)
 Frame = -2

Query: 439 HACMLKTGLHLLPFPVXXXXXXXXXXXXXXXARSIFDCIASPCLFHHTAVLRSLSSAPGA 260
           H  M+KTG+    F V                 SIF  +++  L+    +LR  S +   
Sbjct: 54  HGYMVKTGIDRDDFAVSKLIAFSIQDIRYAS--SIFGNVSNANLYMFNTMLRGYSMSDEP 111

Query: 259 RSVADAIALFRSLHASPGLALNQFAFIPTLKVXXXXXXXXXXXXXXXXXXXXXXXLYVNV 80
                A  +F  L A  GLAL++F+FI TLK                         + ++
Sbjct: 112 ER---AFRVFNQLRAK-GLALDRFSFITTLKSCARELCSRIGEGVHGIVLRSGFMSFTDL 167

Query: 79  RNTLIHLYCRCGRVSDDGLYLFDEMP 2
           RN L+H YC CGR+S D   +FDEMP
Sbjct: 168 RNALLHFYCVCGRIS-DARRVFDEMP 192


>gb|EMJ23502.1| hypothetical protein PRUPE_ppa003920mg [Prunus persica]
          Length = 540

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 45/145 (31%), Positives = 65/145 (44%), Gaps = 2/145 (1%)
 Frame = -2

Query: 430 MLKTGLHLLPFPVXXXXXXXXXXXXXXXARSIFDCIASPCLFHHTAVLR--SLSSAPGAR 257
           M+KTGL  +PF +                 SIF+ I +P LF    ++R  S+S  P   
Sbjct: 1   MVKTGLDCVPFTLSKLLVSSIHDIQYAA--SIFNRIQNPNLFMFNTMVRGYSISDDP--- 55

Query: 256 SVADAIALFRSLHASPGLALNQFAFIPTLKVXXXXXXXXXXXXXXXXXXXXXXXLYVNVR 77
               A  +F +L A   + L+QF+FI TLK                        ++VNV+
Sbjct: 56  --THAFRVFNNLRAQ-NITLDQFSFITTLKACARELAIGTGQGIHGIVVRSGQGMFVNVK 112

Query: 76  NTLIHLYCRCGRVSDDGLYLFDEMP 2
           NTL+H YC   ++ +D   LFDE P
Sbjct: 113 NTLLHFYCISSKM-EDAHKLFDEFP 136


>ref|XP_002522400.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223538285|gb|EEF39892.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 476

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 44/144 (30%), Positives = 62/144 (43%)
 Frame = -2

Query: 439 HACMLKTGLHLLPFPVXXXXXXXXXXXXXXXARSIFDCIASPCLFHHTAVLRSLSSAPGA 260
           H  M+KTG+   PF                   SIF+   +P LF +  +LR  S     
Sbjct: 51  HGFMIKTGIDQDPFATSKLLASSIQDLKYAA--SIFNHTQNPNLFMYNTLLRGFSIGDNP 108

Query: 259 RSVADAIALFRSLHASPGLALNQFAFIPTLKVXXXXXXXXXXXXXXXXXXXXXXXLYVNV 80
           +    A A+F++L A   + L+QF+FI  LK                        ++VNV
Sbjct: 109 KQ---AFAVFKNLRAQR-IELDQFSFITILKASARELAVKAGQGIHGIVARSGYLMFVNV 164

Query: 79  RNTLIHLYCRCGRVSDDGLYLFDE 8
           +NTL+HLY  CG +  D   LFDE
Sbjct: 165 KNTLLHLYSVCGLIG-DAQKLFDE 187