BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00039146
         (315 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu...   104   1e-20
ref|XP_006483358.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   102   4e-20
ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   102   4e-20
ref|XP_004968861.1| PREDICTED: probable RNA-dependent RNA polyme...   101   1e-19
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...   100   2e-19
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot...   100   2e-19
emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    100   2e-19
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]     100   3e-19
gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]        99   6e-19
ref|XP_002457941.1| hypothetical protein SORBIDRAFT_03g022880 [S...    99   6e-19
ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-li...    99   8e-19
ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis...    99   8e-19
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]      98   1e-18
dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]     98   1e-18
ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-li...    97   2e-18
sp|Q8LHH9.1|SHL2_ORYSJ RecName: Full=Probable RNA-dependent RNA ...    97   2e-18
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...    97   2e-18
ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis ...    97   3e-18
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu...    96   4e-18
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]    96   5e-18

>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
           gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
           protein [Populus trichocarpa]
          Length = 1200

 Score =  104 bits (260), Expect = 1e-20
 Identities = 51/91 (56%), Positives = 67/91 (73%), Gaps = 1/91 (1%)
 Frame = +2

Query: 44  EDYERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVLRVNMGTESSLLVN-RRRTSDP 220
           EDY RVVPHAFVHFA P++   AM+A+GR  L LN + L+V++G ++   +N RRRT+ P
Sbjct: 70  EDYRRVVPHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNPFTLNQRRRTTTP 129

Query: 221 FKFSNVRVEIGNQVSRDDFLVAWKGPDAVVD 313
           FK S+V  EIGN VSRD+F V W+GP + VD
Sbjct: 130 FKLSDVGFEIGNLVSRDEFFVGWRGPPSGVD 160


>ref|XP_006483358.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X3 [Citrus
           sinensis]
          Length = 1025

 Score =  102 bits (255), Expect = 4e-20
 Identities = 51/91 (56%), Positives = 66/91 (72%), Gaps = 1/91 (1%)
 Frame = +2

Query: 44  EDYERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVLRVNMGTESSLLVNRR-RTSDP 220
           +DYE+V PHAFVHFA P    +A+DAAGR  L LNG+ L+V++G E+   +N+R RTS P
Sbjct: 70  DDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGQALKVSLGPENPFRLNQRGRTSTP 129

Query: 221 FKFSNVRVEIGNQVSRDDFLVAWKGPDAVVD 313
           FK  +V VEIG  VSRD+F VAW+GP +  D
Sbjct: 130 FKLPDVCVEIGTLVSRDEFFVAWRGPASGTD 160


>ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus
           sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED:
           RNA-dependent RNA polymerase 6-like isoform X2 [Citrus
           sinensis]
          Length = 1197

 Score =  102 bits (255), Expect = 4e-20
 Identities = 51/91 (56%), Positives = 66/91 (72%), Gaps = 1/91 (1%)
 Frame = +2

Query: 44  EDYERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVLRVNMGTESSLLVNRR-RTSDP 220
           +DYE+V PHAFVHFA P    +A+DAAGR  L LNG+ L+V++G E+   +N+R RTS P
Sbjct: 70  DDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGQALKVSLGPENPFRLNQRGRTSTP 129

Query: 221 FKFSNVRVEIGNQVSRDDFLVAWKGPDAVVD 313
           FK  +V VEIG  VSRD+F VAW+GP +  D
Sbjct: 130 FKLPDVCVEIGTLVSRDEFFVAWRGPASGTD 160


>ref|XP_004968861.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2-like [Setaria
           italica]
          Length = 1211

 Score =  101 bits (251), Expect = 1e-19
 Identities = 46/96 (47%), Positives = 63/96 (65%)
 Frame = +2

Query: 17  PVGGGASWKEDYERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVLRVNMGTESSLLV 196
           P  G A     Y+RV PHAFVHFARPE  ++A DAAGR+ L+L  + LR     +SS+  
Sbjct: 74  PAAGAAGQPPQYDRVPPHAFVHFARPEAARRAADAAGRSELILGRKPLRAASAPDSSIRA 133

Query: 197 NRRRTSDPFKFSNVRVEIGNQVSRDDFLVAWKGPDA 304
           +RRR   PF+F++ R+E+G+  + D F  AW+GPDA
Sbjct: 134 SRRRNVKPFRFTDSRLEVGDLPAPDSFFAAWRGPDA 169


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score =  100 bits (250), Expect = 2e-19
 Identities = 48/91 (52%), Positives = 67/91 (73%), Gaps = 1/91 (1%)
 Frame = +2

Query: 44  EDYERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVLRVNMGTESSLLVN-RRRTSDP 220
           EDY++V PHAFVHF  PE    A+DAAG++ L L+G+ L+V++G E+   +N RRRT+ P
Sbjct: 70  EDYKKVEPHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGPETPFHLNQRRRTTFP 129

Query: 221 FKFSNVRVEIGNQVSRDDFLVAWKGPDAVVD 313
           FKF +VR+EIG  VSRD++   W+GP + VD
Sbjct: 130 FKFPDVRLEIGILVSRDEYFAGWRGPSSGVD 160


>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
          Length = 1197

 Score =  100 bits (249), Expect = 2e-19
 Identities = 51/91 (56%), Positives = 67/91 (73%), Gaps = 1/91 (1%)
 Frame = +2

Query: 44  EDYERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVLRVNMGTESSLLVN-RRRTSDP 220
           +DYE+VVPHAFVHFA  E+ K A+ AAG N L+L  + L V++G E+   +N RRRT+ P
Sbjct: 69  KDYEKVVPHAFVHFASSESAKYALAAAGGNGLILGKKPLIVSLGPENPYRLNQRRRTTMP 128

Query: 221 FKFSNVRVEIGNQVSRDDFLVAWKGPDAVVD 313
           FKFS+V VE+G  VS+DDF+V W+GP   VD
Sbjct: 129 FKFSDVSVEMGVLVSKDDFVVGWRGPRTGVD 159


>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  100 bits (249), Expect = 2e-19
 Identities = 51/91 (56%), Positives = 67/91 (73%), Gaps = 1/91 (1%)
 Frame = +2

Query: 44  EDYERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVLRVNMGTESSLLVN-RRRTSDP 220
           +DYE+VVPHAFVHFA  E+ K A+ AAG N L+L  + L V++G E+   +N RRRT+ P
Sbjct: 69  KDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLNQRRRTTMP 128

Query: 221 FKFSNVRVEIGNQVSRDDFLVAWKGPDAVVD 313
           FKFS+V VE+G  VS+DDF+V W+GP   VD
Sbjct: 129 FKFSDVSVEMGVLVSKDDFVVGWRGPRTGVD 159


>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
          Length = 1197

 Score =  100 bits (248), Expect = 3e-19
 Identities = 50/91 (54%), Positives = 67/91 (73%), Gaps = 1/91 (1%)
 Frame = +2

Query: 44  EDYERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVLRVNMGTESSLLVN-RRRTSDP 220
           +DYE+VVPHAFVHFA  E+ K A+ AAG N L+L  + L V++G E+   +N RRRT+ P
Sbjct: 69  KDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLNQRRRTTMP 128

Query: 221 FKFSNVRVEIGNQVSRDDFLVAWKGPDAVVD 313
           FKFS+V +E+G  VS+DDF+V W+GP   VD
Sbjct: 129 FKFSDVSIEMGVLVSKDDFVVGWRGPRTGVD 159


>gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
          Length = 1197

 Score = 99.0 bits (245), Expect = 6e-19
 Identities = 48/91 (52%), Positives = 65/91 (71%), Gaps = 1/91 (1%)
 Frame = +2

Query: 44  EDYERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVLRVNMGTESSLLVN-RRRTSDP 220
           +DY++V PHAFVHFA P T   A+DAAGR  LV N ++L+V++G E+   +N RRR + P
Sbjct: 70  DDYKKVEPHAFVHFASPLTATWAVDAAGRTELVFNNQLLKVSLGPENPYYLNRRRRNTTP 129

Query: 221 FKFSNVRVEIGNQVSRDDFLVAWKGPDAVVD 313
           FK S+V ++IG  VSRD+F V W+GP   VD
Sbjct: 130 FKLSDVCLDIGGMVSRDEFFVGWRGPPFGVD 160


>ref|XP_002457941.1| hypothetical protein SORBIDRAFT_03g022880 [Sorghum bicolor]
           gi|241929916|gb|EES03061.1| hypothetical protein
           SORBIDRAFT_03g022880 [Sorghum bicolor]
          Length = 1207

 Score = 99.0 bits (245), Expect = 6e-19
 Identities = 47/93 (50%), Positives = 63/93 (67%)
 Frame = +2

Query: 20  VGGGASWKEDYERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVLRVNMGTESSLLVN 199
           V   A+    Y+RV PHAFVHFARPE  + A DAAGR+ L+L+G+ LR     ESSL  +
Sbjct: 72  VTSAAAQPPQYDRVPPHAFVHFARPEGARAAADAAGRSELILSGKPLRAASAQESSLRAS 131

Query: 200 RRRTSDPFKFSNVRVEIGNQVSRDDFLVAWKGP 298
           RRR+  PF+F   R+E+G+  ++D FL AW+GP
Sbjct: 132 RRRSVSPFRFPGSRLEVGDLPAKDAFLAAWRGP 164


>ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
          Length = 1197

 Score = 98.6 bits (244), Expect = 8e-19
 Identities = 45/91 (49%), Positives = 65/91 (71%), Gaps = 1/91 (1%)
 Frame = +2

Query: 44  EDYERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVLRVNMGTESSLLVN-RRRTSDP 220
           +DY++VVPHAFVHF  P++  +A+ AAGR  L+ N ++L+ ++G ES   +N RRRT  P
Sbjct: 69  DDYKKVVPHAFVHFVSPDSAAEALHAAGRGELIFNDKLLKASLGPESPFHINQRRRTKVP 128

Query: 221 FKFSNVRVEIGNQVSRDDFLVAWKGPDAVVD 313
           FK S+V+V+IGN    D F VAW+GP + +D
Sbjct: 129 FKLSDVQVDIGNLTCHDGFSVAWRGPSSGMD 159


>ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis sativus]
           gi|316989907|gb|ADU77019.1| RNA-dependent RNA polymerase
           6 [Cucumis sativus]
          Length = 1197

 Score = 98.6 bits (244), Expect = 8e-19
 Identities = 45/91 (49%), Positives = 65/91 (71%), Gaps = 1/91 (1%)
 Frame = +2

Query: 44  EDYERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVLRVNMGTESSLLVN-RRRTSDP 220
           +DY++VVPHAFVHF  P++  +A+ AAGR  L+ N ++L+ ++G ES   +N RRRT  P
Sbjct: 69  DDYKKVVPHAFVHFVSPDSAAEALHAAGRGELIFNDKLLKASLGPESPFHINQRRRTKVP 128

Query: 221 FKFSNVRVEIGNQVSRDDFLVAWKGPDAVVD 313
           FK S+V+V+IGN    D F VAW+GP + +D
Sbjct: 129 FKLSDVQVDIGNLTCHDGFSVAWRGPSSGMD 159


>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 98.2 bits (243), Expect = 1e-18
 Identities = 50/90 (55%), Positives = 66/90 (73%), Gaps = 1/90 (1%)
 Frame = +2

Query: 47  DYERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVLRVNMGTESSLLVN-RRRTSDPF 223
           +YE+VVPHAFVHFA  E+ K A+ AAG N L+L  + L V++G E+   +N RRRT+ PF
Sbjct: 70  NYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLNQRRRTTMPF 129

Query: 224 KFSNVRVEIGNQVSRDDFLVAWKGPDAVVD 313
           KFS+V VE+G  VS+DDF+V W+GP   VD
Sbjct: 130 KFSDVSVEMGVLVSKDDFVVGWRGPRTGVD 159


>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 98.2 bits (243), Expect = 1e-18
 Identities = 50/90 (55%), Positives = 66/90 (73%), Gaps = 1/90 (1%)
 Frame = +2

Query: 47  DYERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVLRVNMGTESSLLVN-RRRTSDPF 223
           +YE+VVPHAFVHFA  E+ K A+ AAG N L+L  + L V++G E+   +N RRRT+ PF
Sbjct: 70  NYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLNQRRRTTMPF 129

Query: 224 KFSNVRVEIGNQVSRDDFLVAWKGPDAVVD 313
           KFS+V VE+G  VS+DDF+V W+GP   VD
Sbjct: 130 KFSDVSVEMGVLVSKDDFVVGWRGPRTGVD 159


>ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Fragaria vesca
           subsp. vesca]
          Length = 1197

 Score = 97.1 bits (240), Expect = 2e-18
 Identities = 49/105 (46%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
 Frame = +2

Query: 2   PVYHVPVGGGASWKEDYERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVLRVNMGTE 181
           P + +         +DY +V PHAFVHFA PE+    MDA GR  L  N + L+ ++G E
Sbjct: 56  PNFEISDAADIETTDDYRKVEPHAFVHFASPESVTAVMDAVGRCQLFFNNQALKASLGPE 115

Query: 182 SSLLVN-RRRTSDPFKFSNVRVEIGNQVSRDDFLVAWKGPDAVVD 313
           +   +N RRRT  PFK ++VR+EIG+ V  D+F VAWKGPD  VD
Sbjct: 116 NLFNMNKRRRTKIPFKLADVRLEIGSLVRLDEFFVAWKGPDHGVD 160


>sp|Q8LHH9.1|SHL2_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase SHL2; AltName:
           Full=Protein SHOOTLESS 2 gi|21328146|dbj|BAC00725.1|
           putative RNA-dependent RNA polymerase [Oryza sativa
           Japonica Group] gi|157279691|dbj|BAF80151.1| SHOOTLESS2
           [Oryza sativa Japonica Group]
          Length = 1218

 Score = 97.1 bits (240), Expect = 2e-18
 Identities = 47/88 (53%), Positives = 61/88 (69%)
 Frame = +2

Query: 50  YERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVLRVNMGTESSLLVNRRRTSDPFKF 229
           Y+RV PHAFVHFARPE  ++A D AG   L+L G+ LRV    +SSL V+RR +  PF+F
Sbjct: 93  YDRVPPHAFVHFARPEGARRAADLAGETRLILRGKPLRVASAPDSSLRVSRRSSIAPFRF 152

Query: 230 SNVRVEIGNQVSRDDFLVAWKGPDAVVD 313
            +VR+E+G   S   FL AW+GPDA +D
Sbjct: 153 PDVRLEVGALPSPGAFLAAWRGPDAGLD 180


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
           gi|223545464|gb|EEF46969.1| RNA-dependent RNA
           polymerase, putative [Ricinus communis]
          Length = 1203

 Score = 97.1 bits (240), Expect = 2e-18
 Identities = 49/89 (55%), Positives = 63/89 (70%), Gaps = 1/89 (1%)
 Frame = +2

Query: 50  YERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVLRVNMGTESSLLVN-RRRTSDPFK 226
           Y RV PHAFVHFA P++   A +AAG   L  NGR ++V++G E+   +N RRRT+ PFK
Sbjct: 72  YRRVEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHLNQRRRTTIPFK 131

Query: 227 FSNVRVEIGNQVSRDDFLVAWKGPDAVVD 313
            S+V VEIG  VSRD+FLV W+GP + VD
Sbjct: 132 LSDVHVEIGTLVSRDEFLVGWRGPPSGVD 160


>ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis lyrata subsp. lyrata]
           gi|297323519|gb|EFH53940.1| RNA-dependent RNA polymerase
           6 [Arabidopsis lyrata subsp. lyrata]
          Length = 1197

 Score = 96.7 bits (239), Expect = 3e-18
 Identities = 47/93 (50%), Positives = 71/93 (76%), Gaps = 3/93 (3%)
 Frame = +2

Query: 44  EDYERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVLRVNMGTESSLLVN-RRRTSDP 220
           +DY++V PHAFVHFA PE+  +AMDAAG+  L+L+G+ L+V++G ++   +N RRRT+ P
Sbjct: 70  DDYKKVEPHAFVHFAVPESAARAMDAAGQCNLILDGQPLKVSLGPKNPYTLNQRRRTTTP 129

Query: 221 FKFSNVRVEIGNQVSRDDFLVAWK--GPDAVVD 313
           +K + + +EIG  VSRD+FLV+W+  G D +VD
Sbjct: 130 YKLAGISLEIGTLVSRDEFLVSWRADGVDFLVD 162


>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
           gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
           protein [Populus trichocarpa]
          Length = 1198

 Score = 96.3 bits (238), Expect = 4e-18
 Identities = 49/91 (53%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
 Frame = +2

Query: 44  EDYERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVLRVNMGTESSLLVN-RRRTSDP 220
           EDY RV PHAFVHFA P++   A+DAA R  L LN + L+ ++G E+   +N RRR + P
Sbjct: 70  EDYRRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFTLNQRRRKTTP 129

Query: 221 FKFSNVRVEIGNQVSRDDFLVAWKGPDAVVD 313
           FK S V VEIG  VSRD+F V W+GP   VD
Sbjct: 130 FKLSGVGVEIGTLVSRDEFFVGWRGPPTGVD 160


>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
          Length = 1197

 Score = 95.9 bits (237), Expect = 5e-18
 Identities = 50/90 (55%), Positives = 65/90 (72%), Gaps = 1/90 (1%)
 Frame = +2

Query: 47  DYERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVLRVNMGTESSLLVN-RRRTSDPF 223
           +YE+VVPHAFVHFA  E+ K A+ AAG N LVL  + L V++G E+   +N RRRT+ PF
Sbjct: 70  NYEKVVPHAFVHFASSESAKHALAAAGGNELVLGKKPLIVSLGPENPYRLNQRRRTTMPF 129

Query: 224 KFSNVRVEIGNQVSRDDFLVAWKGPDAVVD 313
           KFS+V VE+G  VS+ DF+V W+GP   VD
Sbjct: 130 KFSDVSVEMGVLVSKHDFVVGWRGPRTGVD 159