BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00038532
         (842 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EOY04065.1| Retrotransposon protein, putative [Theobroma cacao]    239   7e-61
gb|EOY19271.1| Retrotransposon protein, putative [Theobroma cacao]    222   1e-55
dbj|BAA22288.1| polyprotein [Oryza australiensis]                     219   1e-54
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap...   207   3e-51
emb|CAD39797.2| OSJNBa0071G03.10 [Oryza sativa Japonica Group]        207   3e-51
gb|ABA99022.2| retrotransposon protein, putative, Ty1-copia subc...   204   3e-50
ref|XP_006436321.1| hypothetical protein CICLE_v10033628mg, part...   204   4e-50
ref|XP_004977683.1| PREDICTED: uncharacterized protein LOC101759...   203   5e-50
emb|CAD40471.2| OSJNBa0067G20.17 [Oryza sativa Japonica Group]        198   2e-48
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e...   197   4e-48
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc...   197   5e-48
gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subc...   197   5e-48
gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]     197   5e-48
gb|ADB85430.1| putative retrotransposon protein [Phyllostachys e...   194   3e-47
gb|AAX96621.1| retrotransposon protein, putative, Ty1-copia sub-...   192   1e-46
gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]     187   4e-45
ref|XP_006587404.1| PREDICTED: uncharacterized protein LOC102662...   179   8e-43
gb|AAO73268.1| putative polyprotein [Oryza sativa Japonica Group]     176   9e-42
gb|AAK52165.1|AC084831_19 putative polyprotein [Oryza sativa Jap...   174   5e-41
ref|XP_006386829.1| hypothetical protein POPTR_0002s22700g [Popu...   172   1e-40

>gb|EOY04065.1| Retrotransposon protein, putative [Theobroma cacao]
          Length = 289

 Score =  239 bits (611), Expect = 7e-61
 Identities = 129/271 (47%), Positives = 171/271 (63%), Gaps = 11/271 (4%)
 Frame = -1

Query: 785 SSLNLHSILDTNKLTGQNFLDWFRNLRIVLKVEKIAYVLEGPLPTSLADDATSDQLLAYQ 606
           ++L L SILD NKL G NFLD FRNL+IVLK EK +Y+ +  +P     DA  +   A+Q
Sbjct: 3   NNLLLRSILDANKLIGPNFLDSFRNLKIVLKQEKKSYIFDTSIPPVPTTDANVEDKEAHQ 62

Query: 605 KHMIDSELASCIMLASMSPELQKQHEHMDAYTIVYHLRELFDEQARIERFEVSKLLFGSK 426
           +H  D + A+C+MLASM+ ELQKQ EHMD  +++ HLRELFD++ R ER+E+SK LF  K
Sbjct: 63  RHKDDDDQAACVMLASMTLELQKQDEHMDVQSMILHLRELFDKEGRTERYEISKELFRCK 122

Query: 425 MQEGSSAVQFVLKMNGYIERLRSLGFAMDHELSIGLILHSLSNSYSQFVMNYRINQIEST 246
           M EGSS    VLKM G IERL  LG AM HELSI L+L SL +S+SQFV+N+ +N++E+T
Sbjct: 123 MAEGSSVKPHVLKMIGPIERLGQLGLAMYHELSINLVLQSLPDSFSQFVLNFHMNRLEAT 182

Query: 245 IPELINMLKIVELSVKKEPKVVMLFDSSK-----------KGSXXXXXXXXXXXXXXXXX 99
           +P+L+NML   E S++K    ++L  SSK           K                   
Sbjct: 183 LPKLLNMLDTAEKSIRKHKGSLLLISSSKAHTKQHKKKAQKEKKVKSQNEKALKPKGGVK 242

Query: 98  XXXXKGSCHHCGEMGHWKRNCKIYLESLKKK 6
               K  C HCG++GHW+RNCK YL ++ KK
Sbjct: 243 KDKEKDICDHCGKLGHWRRNCKEYLVTVSKK 273


>gb|EOY19271.1| Retrotransposon protein, putative [Theobroma cacao]
          Length = 277

 Score =  222 bits (565), Expect = 1e-55
 Identities = 114/241 (47%), Positives = 154/241 (63%), Gaps = 11/241 (4%)
 Frame = -1

Query: 695 KVEKIAYVLEGPLPTSLADDATSDQLLAYQKHMIDSELASCIMLASMSPELQKQHEHMDA 516
           K EK +YV++ P+P     DA+++   AYQ H  D + A+C+MLASM+ ELQKQHEHMD 
Sbjct: 21  KEEKKSYVIDTPIPPVPVADASAEDKEAYQCHKDDDDQAACMMLASMTLELQKQHEHMDV 80

Query: 515 YTIVYHLRELFDEQARIERFEVSKLLFGSKMQEGSSAVQFVLKMNGYIERLRSLGFAMDH 336
            +++ HLRELFD + RIER+E+SK LF  KM EGSS    VLKM G IERLR LG AMDH
Sbjct: 81  QSMILHLRELFDREGRIERYEISKELFRCKMAEGSSVRPHVLKMIGLIERLRQLGLAMDH 140

Query: 335 ELSIGLILHSLSNSYSQFVMNYRINQIESTIPELINMLKIVELSVKKEPKVVMLFDSSK- 159
           ELSI L+L SL +S+SQF++N+ +N++E+T+PEL+NML   + S++K+   ++L   SK 
Sbjct: 141 ELSIDLVLQSLPDSFSQFMLNFHMNRLEATLPELLNMLDTAKRSIRKDKGSLLLLSFSKA 200

Query: 158 ----------KGSXXXXXXXXXXXXXXXXXXXXXKGSCHHCGEMGHWKRNCKIYLESLKK 9
                     KG                         CHHCG++GHW+RNCK YL ++ K
Sbjct: 201 HTKQQKKKAQKGKKVKSQNEKALKPKGGVKKDKETDICHHCGKLGHWRRNCKEYLATVSK 260

Query: 8   K 6
           K
Sbjct: 261 K 261


>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score =  219 bits (558), Expect = 1e-54
 Identities = 122/271 (45%), Positives = 161/271 (59%), Gaps = 11/271 (4%)
 Frame = -1

Query: 785 SSLNLHSILDTNKLTGQNFLDWFRNLRIVLKVEKIAYVLEGPLPTSLADDATSDQLLAYQ 606
           S+ NL SIL+  KL G NF+DW+RNLRIVLK E+  YVLE P P  L ++AT+     ++
Sbjct: 8   STFNLRSILEKEKLNGTNFMDWYRNLRIVLKQERKEYVLEVPYPEELPNNATATARRGFE 67

Query: 605 KHMIDSELASCIMLASMSPELQKQHEHMDAYTIVYHLRELFDEQARIERFEVSKLLFGSK 426
           KH  D+   SC+MLA+MSPELQKQ+E  DA+T +  LR +F+ QAR ERF  SK LF  +
Sbjct: 68  KHTNDALDISCLMLATMSPELQKQYESSDAHTTIQGLRGMFENQARDERFNTSKSLFACR 127

Query: 425 MQEGSSAVQFVLKMNGYIERLRSLGFAMDHELSIGLILHSLSNSYSQFVMNYRINQIEST 246
           + EG+     V+KM GYIE L  LGF +  EL+  +IL SL  S+  F++NY +N ++ T
Sbjct: 128 LVEGNPVSPHVIKMIGYIESLEKLGFPLSQELATDVILQSLPPSFEPFILNYHMNNMDRT 187

Query: 245 IPELINMLKIVELSVKKEPKVVMLFDSSK-----KGSXXXXXXXXXXXXXXXXXXXXXKG 81
           + EL  MLK VE S++K    VM+  ++K     K                       KG
Sbjct: 188 LAELHGMLKTVEESIQKNGHHVMMMQNAKRKPPVKKLCTKRKLTPDEIASASNAKKGKKG 247

Query: 80  S------CHHCGEMGHWKRNCKIYLESLKKK 6
           S      C +C E GHWKRNCK Y+E LKKK
Sbjct: 248 SAASDAVCFYCKETGHWKRNCKKYMEDLKKK 278


>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
           gi|62701883|gb|AAX92956.1| retrotransposon protein,
           putative, Ty1-copia sub-class [Oryza sativa Japonica
           Group] gi|108864259|gb|ABA92827.2| retrotransposon
           protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1184

 Score =  207 bits (528), Expect = 3e-51
 Identities = 112/260 (43%), Positives = 151/260 (58%)
 Frame = -1

Query: 785 SSLNLHSILDTNKLTGQNFLDWFRNLRIVLKVEKIAYVLEGPLPTSLADDATSDQLLAYQ 606
           SS NL SIL+  KLTG N +DW+RNLRIVL+ E   +VL  P P  L ++A + Q   ++
Sbjct: 7   SSFNLRSILEKEKLTGTNIMDWYRNLRIVLRQEHKEFVLTQPFPADLPNNAPAAQRREHE 66

Query: 605 KHMIDSELASCIMLASMSPELQKQHEHMDAYTIVYHLRELFDEQARIERFEVSKLLFGSK 426
           K   D    SC+MLA+MSPELQ+Q+E +DA+TI+  LR +F++QAR +RF  SK LF  +
Sbjct: 67  KRCNDYLDISCLMLATMSPELQRQYEALDAHTIITGLRNMFEDQARAKRFNTSKSLFACR 126

Query: 425 MQEGSSAVQFVLKMNGYIERLRSLGFAMDHELSIGLILHSLSNSYSQFVMNYRINQIEST 246
           + EG+     V+KM GY E L  LGF +  EL+  LIL SL  S+  F++N+ +N +  T
Sbjct: 127 LAEGNPVSPHVIKMIGYNETLEKLGFPLSQELATDLILQSLPPSFEPFILNFNMNNMNRT 186

Query: 245 IPELINMLKIVELSVKKEPKVVMLFDSSKKGSXXXXXXXXXXXXXXXXXXXXXKGSCHHC 66
           + +L  MLK  E S+KK    VM+    K  +                        C  C
Sbjct: 187 LTKLPGMLKTAEESIKKNSNHVMVMHKRKPNN--------------KKSGPAKDAECFFC 232

Query: 65  GEMGHWKRNCKIYLESLKKK 6
            E GHWKRNCK YLE LK+K
Sbjct: 233 KEAGHWKRNCKKYLEQLKQK 252


>emb|CAD39797.2| OSJNBa0071G03.10 [Oryza sativa Japonica Group]
          Length = 948

 Score =  207 bits (528), Expect = 3e-51
 Identities = 114/270 (42%), Positives = 154/270 (57%), Gaps = 10/270 (3%)
 Frame = -1

Query: 785 SSLNLHSILDTNKLTGQNFLDWFRNLRIVLKVEKIAYVLEGPLPTSLADDATSDQLLAYQ 606
           S+ NL SIL+  KLTG NF+DW+RNLRIVL+ E   ++L  P P  L ++A + Q   ++
Sbjct: 84  SNFNLRSILEKEKLTGTNFMDWYRNLRIVLRQEHKEFLLIQPFPADLPNNAPAAQRRKHE 143

Query: 605 KHMIDSELASCIMLASMSPELQKQHEHMDAYTIVYHLRELFDEQARIERFEVSKLLFGSK 426
           +   D    SC+MLA+MSPELQ Q+E +DA+TI+  LR +F++QAR ERF  SK LF  +
Sbjct: 144 RRCNDYLDISCLMLATMSPELQSQYEALDAHTIITGLRNMFEDQARAERFNTSKFLFAYR 203

Query: 425 MQEGSSAVQFVLKMNGYIERLRSLGFAMDHELSIGLILHSLSNSYSQFVMNYRINQIEST 246
           + +G+     V+KM GY E L  LGF +  EL+  LIL SL  S+  F+MN+ +N +  T
Sbjct: 204 LAQGNPVSPHVIKMIGYTESLDKLGFPLSRELATDLILQSLPPSFEPFIMNFNMNNLNRT 263

Query: 245 IPELINMLKIVELSVKKEPKVVMLF-----DSSKKGSXXXXXXXXXXXXXXXXXXXXXKG 81
           + EL  MLK  E S+KK    VM+      ++ K G                       G
Sbjct: 264 LAELHGMLKTAEESIKKNSNYVMVMHKLKPNNKKSGQKRKLNSDEITSTSNCKTKVQKTG 323

Query: 80  -----SCHHCGEMGHWKRNCKIYLESLKKK 6
                 C  C E GHWKRNCK YLE LK+K
Sbjct: 324 PAKDAECFFCKETGHWKRNCKKYLEQLKQK 353


>gb|ABA99022.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 829

 Score =  204 bits (519), Expect = 3e-50
 Identities = 115/270 (42%), Positives = 154/270 (57%), Gaps = 10/270 (3%)
 Frame = -1

Query: 785 SSLNLHSILDTNKLTGQNFLDWFRNLRIVLKVEKIAYVLEGPLPTSLADDATSDQLLAYQ 606
           SS NL SIL+  KLTG NF+DW+RNLRIVL+ E   +VL    P +L ++A + Q   ++
Sbjct: 86  SSFNLRSILEKEKLTGTNFMDWYRNLRIVLRQEHKEFVLTESFPANLPNNALAAQRREHE 145

Query: 605 KHMIDSELASCIMLASMSPELQKQHEHMDAYTIVYHLRELFDEQARIERFEVSKLLFGSK 426
           K   D    SC+MLA+MSPELQ+Q+E +DA+TI+  LR +F++QAR ERF  SK LF  +
Sbjct: 146 KRCNDYLDISCLMLATMSPELQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSLFACR 205

Query: 425 MQEGSSAVQFVLKMNGYIERLRSLGFAMDHELSIGLILHSLSNSYSQFVMNYRINQIEST 246
           + EG+     V+K+ GY E L  LGF +  EL+  LIL SL  S+  F+MN+ +N +  T
Sbjct: 206 LAEGNPVSPHVIKIIGYTESLDKLGFPLSRELATDLILQSLPPSFEPFIMNFNMNNLNRT 265

Query: 245 IPELINMLKIVELSVKKEPKVVMLF-----DSSKKGSXXXXXXXXXXXXXXXXXXXXXKG 81
           + EL  MLK  E S+KK    VM+      ++ K G                       G
Sbjct: 266 LAELHGMLKTAEESIKKNSNHVMVMHKRKPNNKKSGQKRKLNSDEITSTSNSKTKVQKTG 325

Query: 80  -----SCHHCGEMGHWKRNCKIYLESLKKK 6
                 C    E GHWKRNCK YLE LK+K
Sbjct: 326 PAKDAECFFYKETGHWKRNCKKYLEQLKQK 355


>ref|XP_006436321.1| hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
           gi|557538517|gb|ESR49561.1| hypothetical protein
           CICLE_v10033628mg, partial [Citrus clementina]
          Length = 263

 Score =  204 bits (518), Expect = 4e-50
 Identities = 118/259 (45%), Positives = 157/259 (60%), Gaps = 3/259 (1%)
 Frame = -1

Query: 773 LHSILDTNKLTGQNFLDWFRNLRIVLKVEKIAYVLEGPLPTSLADDATSDQLLAYQKHMI 594
           L  IL+  +LTG N++DWFRNLRI+L  EKI+YVL+ P P  + +  +  + + YQK   
Sbjct: 9   LARILENYRLTGPNYVDWFRNLRIILNYEKISYVLDTPKPNEIPEGTSEAERVTYQKWQD 68

Query: 593 DSELASCIMLASMSPELQKQHEHMDAYTIVYHLRELFDEQARIERFEVSKLLFGSKMQEG 414
           D   A   +LASMS ELQ+QHE+M           L+ EQ+R  R+E+SK LF  +M EG
Sbjct: 69  DDLSAKSYILASMSNELQRQHENMP---------NLYSEQSRTVRYEISKKLFRMRMTEG 119

Query: 413 SSAVQFVLKMNGYIERLRSLGFAMDHELSIGLILHSLSNSYSQFVMNYRINQIESTIPEL 234
            S  + VLKM  YIE+L +L F+MD EL+I LIL SL +S+SQF+MN+ +N++E ++ EL
Sbjct: 120 -SVNEHVLKMIDYIEQLEALNFSMDGELAIDLILQSLPDSFSQFIMNFNMNKMECSLAEL 178

Query: 233 INMLKIVELSVKKEPKVVMLFD--SSKKG-SXXXXXXXXXXXXXXXXXXXXXKGSCHHCG 63
           + ML   E  +KK PK VM  +  S+KKG                       KG C HCG
Sbjct: 179 LKMLNTAETCIKK-PKDVMAIEGSSAKKGKKKKFQPKAKGGIKKGKANKPNDKGKCFHCG 237

Query: 62  EMGHWKRNCKIYLESLKKK 6
           + GHWKRNCK YL SLK K
Sbjct: 238 KDGHWKRNCKAYLNSLKVK 256


>ref|XP_004977683.1| PREDICTED: uncharacterized protein LOC101759138 [Setaria italica]
          Length = 272

 Score =  203 bits (517), Expect = 5e-50
 Identities = 112/266 (42%), Positives = 149/266 (56%), Gaps = 13/266 (4%)
 Frame = -1

Query: 764 ILDTNKLTGQNFLDWFRNLRIVLKVEKIAYVLEGPLPTSLADDATSDQLLAYQKHMIDSE 585
           +L+  KL G NF+DW+ NLRIV + EK  YVLE P P     DA +    AYQKH  D+ 
Sbjct: 1   MLEKEKLNGTNFIDWYCNLRIVFRQEKTEYVLEQPYPDDPLVDANAAARRAYQKHCDDA- 59

Query: 584 LASCIMLASMSPELQKQHEHMDAYTIVYHLRELFDEQARIERFEVSKLLFGSKMQEGSSA 405
             +C+MLA+M  +LQKQ+EH+DA+T++  LR +F+ Q R ER+ +SK LF  K+ EGSS 
Sbjct: 60  -LNCLMLATMFLDLQKQYEHVDAHTMIEGLRGIFENQVRAERYNISKSLFACKLAEGSSV 118

Query: 404 VQFVLKMNGYIERLRSLGFAMDHELSIGLILHSLSNSYSQFVMNYRINQIESTIPELINM 225
             +V+K+ GYIE L  LGF +   L+I +IL  L+ SY  F++NY++N +E T+ EL  M
Sbjct: 119 SPYVIKIIGYIETLDKLGFELKDHLAIDIILQLLTMSYKPFILNYQMNGMEKTLLELHGM 178

Query: 224 LKIVELSVKKEPKVVMLFDSSKK-------------GSXXXXXXXXXXXXXXXXXXXXXK 84
           LKI + S+KK P  VM+     K             G                       
Sbjct: 179 LKIAKESIKKNPTHVMMVQKENKKRKRWTPPKGKGKGKVVPNEPPSSKPKRKGKSSPSPD 238

Query: 83  GSCHHCGEMGHWKRNCKIYLESLKKK 6
             C HC   GHW RNCK YLE  KKK
Sbjct: 239 DECFHCHLKGHWSRNCKKYLEDKKKK 264


>emb|CAD40471.2| OSJNBa0067G20.17 [Oryza sativa Japonica Group]
          Length = 276

 Score =  198 bits (504), Expect = 2e-48
 Identities = 112/270 (41%), Positives = 154/270 (57%), Gaps = 10/270 (3%)
 Frame = -1

Query: 785 SSLNLHSILDTNKLTGQNFLDWFRNLRIVLKVEKIAYVLEGPLPTSLADDATSDQLLAYQ 606
           SS NL SIL+  KL G NF+DW+RNLRIVL+ E   +VLE P PT L ++AT+ +   ++
Sbjct: 9   SSFNLRSILEKEKLNGTNFVDWYRNLRIVLRQEHKEFVLEEPFPTDLPNNATAARRREHE 68

Query: 605 KHMIDSELASCIMLASMSPELQKQHEHMDAYTIVYHLRELFDEQARIERFEVSKLLFGSK 426
           K   +    SC+ML ++SPE Q+Q++ +DA+TI+  L  +F+ QAR ERF  SK LF  +
Sbjct: 69  KRCNEYLDISCLMLVTISPEFQRQYQTLDAHTIITRLCNMFEYQARAERFNTSKSLFACR 128

Query: 425 MQEGSSAVQFVLKMNGYIERLRSLGFAMDHELSIGLILHSLSNSYSQFVMNYRINQIEST 246
           + EG++    V+KM GY E L  LGF +  EL+I LIL SL  S+  F+MN+ +++   T
Sbjct: 129 LAEGNAVSPNVIKMIGYTESLEKLGFPLSKELAIDLILQSLPPSFKPFIMNFNMDR---T 185

Query: 245 IPELINMLKIVELSVKKEPKVVMLF-----DSSKKGSXXXXXXXXXXXXXXXXXXXXXKG 81
           + EL  MLK  E S+KK    VM+      ++ K G                       G
Sbjct: 186 LAELHGMLKTAEESIKKNSNYVMVMHKCKPNNKKSGQKRKLNSDEITSTSNSKTKVQKTG 245

Query: 80  -----SCHHCGEMGHWKRNCKIYLESLKKK 6
                 C  C E GHWKRNCK YLE  K+K
Sbjct: 246 PAKDAECFFCKETGHWKRNCKKYLEQFKQK 275


>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 1313

 Score =  197 bits (501), Expect = 4e-48
 Identities = 114/283 (40%), Positives = 157/283 (55%), Gaps = 12/283 (4%)
 Frame = -1

Query: 821 HRLNQPVKRIRMSSLNLHSILDTNKLTGQNFLDWFRNLRIVLKVEKIAYVLEGPLPTSLA 642
           H +  P+  +  SS  L SIL   KL G NF DW RNLRIVL+ +K  +VLE P+P   A
Sbjct: 83  HCIMAPIA-VPTSSFALRSILKKEKLNGTNFADWSRNLRIVLRQDKKEHVLEEPIPDVPA 141

Query: 641 DDATSDQLLAYQKHMIDSELASCIMLASMSPELQKQHEHMDAYTIVYHLRELFDEQARIE 462
           D+A +    AY+K   +S   SC+MLA+M+ +LQKQ E+++AY ++  L+ +F+ QAR +
Sbjct: 142 DNAAATLKSAYKKACDESLDVSCLMLAAMNSDLQKQFENIEAYDMIVALKGMFETQARTK 201

Query: 461 RFEVSKLLFGSKMQEGSSAVQFVLKMNGYIERLRSLGFAMDHELSIGLILHSLSNSYSQF 282
           RFE+SK LF  K+ EGS     ++KM GY + L  LGF +  EL+  LIL SL  SY QF
Sbjct: 202 RFEISKNLFSCKLAEGSPVSPHMIKMVGYTQSLEKLGFPLSQELATDLILASLPASYGQF 261

Query: 281 VMNYRINQIESTIPELINMLKIVELSVKKEPKVVMLFDSSK------------KGSXXXX 138
           ++N+ +N ++  + EL  +LK  E S+KK    VM+   S             KG     
Sbjct: 262 ILNFHMNGLDKNLTELHMLLKTAEDSIKKINSHVMMVQKSTSFKKKARTWVKGKGKKVLD 321

Query: 137 XXXXXXXXXXXXXXXXXKGSCHHCGEMGHWKRNCKIYLESLKK 9
                            +  C +C E GHWKRNCK YL  LKK
Sbjct: 322 GIQTNKPKLKTKSGPTQENECFYCKEPGHWKRNCKKYLADLKK 364


>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1248

 Score =  197 bits (500), Expect = 5e-48
 Identities = 110/259 (42%), Positives = 148/259 (57%), Gaps = 10/259 (3%)
 Frame = -1

Query: 785 SSLNLHSILDTNKLTGQNFLDWFRNLRIVLKVEKIAYVLEGPLPTSLADDATSDQLLAYQ 606
           S+ NL SIL+  KLTG NF+DW+RNLRIVL+ E   +VL  P P +L ++A + Q   ++
Sbjct: 74  SNFNLRSILEKEKLTGTNFMDWYRNLRIVLRQEHKEFVLTEPFPANLPNNAPAAQRREHE 133

Query: 605 KHMIDSELASCIMLASMSPELQKQHEHMDAYTIVYHLRELFDEQARIERFEVSKLLFGSK 426
           K   D    SC+MLA+MSPELQ+Q+E +DA+TI+  LR +F++QAR ERF  SK LF  +
Sbjct: 134 KRCNDYLDISCLMLATMSPELQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSLFACR 193

Query: 425 MQEGSSAVQFVLKMNGYIERLRSLGFAMDHELSIGLILHSLSNSYSQFVMNYRINQIEST 246
           + EG+     V+KM GY E L  LGF +  EL+  LIL SL  S+  F+MN+ +N +  T
Sbjct: 194 LAEGNLVSPHVIKMIGYTESLDKLGFPLSRELATDLILQSLPPSFEPFIMNFNMNNLNRT 253

Query: 245 IPELINMLKIVELSVKKEPKVVMLF-----DSSKKGSXXXXXXXXXXXXXXXXXXXXXKG 81
           + EL  MLK  E S+KK    VM+      ++ K G                       G
Sbjct: 254 LAELHGMLKTAEESIKKNSNHVMVMHKRKPNNKKSGQKRKLNSDEITSTSNSKTKVQKTG 313

Query: 80  S-----CHHCGEMGHWKRN 39
           S     C  C E GHWKRN
Sbjct: 314 SAKDAECFFCKETGHWKRN 332


>gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1073

 Score =  197 bits (500), Expect = 5e-48
 Identities = 111/270 (41%), Positives = 151/270 (55%), Gaps = 10/270 (3%)
 Frame = -1

Query: 785 SSLNLHSILDTNKLTGQNFLDWFRNLRIVLKVEKIAYVLEGPLPTSLADDATSDQLLAYQ 606
           S+ NL  IL+  KLT  N +DW+RNLRIVL+ E   +VL  P P  L ++A + Q   ++
Sbjct: 99  SNFNLRYILEKEKLTRTNIMDWYRNLRIVLRQEHKEFVLTQPFPADLPNNAPAAQRREHE 158

Query: 605 KHMIDSELASCIMLASMSPELQKQHEHMDAYTIVYHLRELFDEQARIERFEVSKLLFGSK 426
           +   +    SC+MLA+MSPELQ+Q+E +DA+TI+  LR +F++QAR ERF  SK LF  +
Sbjct: 159 RRCKEYLDISCLMLATMSPELQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSLFACR 218

Query: 425 MQEGSSAVQFVLKMNGYIERLRSLGFAMDHELSIGLILHSLSNSYSQFVMNYRINQIEST 246
           + EG+     V+KM GY E L  LGF +  EL+  LIL SL  S+  F+MN+ +N +  T
Sbjct: 219 LAEGNPVSPHVIKMIGYTESLDKLGFPLSRELATDLILQSLPPSFEPFIMNFNMNNLNRT 278

Query: 245 IPELINMLKIVELSVKKEPKVVMLF-----DSSKKGSXXXXXXXXXXXXXXXXXXXXXKG 81
           + EL  MLK  E S+KK    VM+      ++ K G                       G
Sbjct: 279 LAELHGMLKTAEESIKKNSNHVMVMHKRKPNNKKSGQKRKLNSDEITSTSNSKTKVQKTG 338

Query: 80  -----SCHHCGEMGHWKRNCKIYLESLKKK 6
                 C    E GHWKRNCK YLE LK+K
Sbjct: 339 PAKDAECFFYKETGHWKRNCKKYLEQLKQK 368


>gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1063

 Score =  197 bits (500), Expect = 5e-48
 Identities = 111/270 (41%), Positives = 151/270 (55%), Gaps = 10/270 (3%)
 Frame = -1

Query: 785 SSLNLHSILDTNKLTGQNFLDWFRNLRIVLKVEKIAYVLEGPLPTSLADDATSDQLLAYQ 606
           S+ NL  IL+  KLT  N +DW+RNLRIVL+ E   +VL  P P  L ++A + Q   ++
Sbjct: 99  SNFNLRYILEKEKLTRTNIMDWYRNLRIVLRQEHKEFVLTQPFPADLPNNAPAAQRREHE 158

Query: 605 KHMIDSELASCIMLASMSPELQKQHEHMDAYTIVYHLRELFDEQARIERFEVSKLLFGSK 426
           +   +    SC+MLA+MSPELQ+Q+E +DA+TI+  LR +F++QAR ERF  SK LF  +
Sbjct: 159 RRCKEYLDISCLMLATMSPELQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSLFACR 218

Query: 425 MQEGSSAVQFVLKMNGYIERLRSLGFAMDHELSIGLILHSLSNSYSQFVMNYRINQIEST 246
           + EG+     V+KM GY E L  LGF +  EL+  LIL SL  S+  F+MN+ +N +  T
Sbjct: 219 LAEGNPVSPHVIKMIGYTESLDKLGFPLSRELATDLILQSLPPSFEPFIMNFNMNNLNRT 278

Query: 245 IPELINMLKIVELSVKKEPKVVMLF-----DSSKKGSXXXXXXXXXXXXXXXXXXXXXKG 81
           + EL  MLK  E S+KK    VM+      ++ K G                       G
Sbjct: 279 LAELHGMLKTAEESIKKNSNHVMVMHKRKPNNKKSGQKRKLNSDEITSTSNSKTKVQKTG 338

Query: 80  -----SCHHCGEMGHWKRNCKIYLESLKKK 6
                 C    E GHWKRNCK YLE LK+K
Sbjct: 339 PAKDAECFFYKETGHWKRNCKKYLEQLKQK 368


>gb|ADB85430.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 896

 Score =  194 bits (494), Expect = 3e-47
 Identities = 112/272 (41%), Positives = 154/272 (56%), Gaps = 13/272 (4%)
 Frame = -1

Query: 785 SSLNLHSILDTNKLTGQNFLDWFRNLRIVLKVEKIAYVLEGPLPTSLADDATSDQLLAYQ 606
           SS  L SIL+  KL G NF DW RNLRIVL+ +K  +VLE P+P    ++A +    AY+
Sbjct: 11  SSFALRSILEKEKLNGTNFADWSRNLRIVLRQDKKEHVLEEPIPDVPTENAAAAIKTAYK 70

Query: 605 KHMIDSELASCIMLASMSPELQKQHEHMDAYTIVYHLRELFDEQARIERFEVSKLLFGSK 426
           K   +S   SC+MLA+M+ +LQKQ E+++AY ++  L+ +F+ QAR ERFE+SK LFG K
Sbjct: 71  KACDESLDVSCLMLAAMNSDLQKQFENIEAYDMIVALKGMFETQARTERFEISKNLFGCK 130

Query: 425 MQEGSSAVQFVLKMNGYIERLRSLGFAMDHELSIGLILHSLSNSYSQFVMNYRINQIEST 246
           + EG      V+KM GY + L  LGF +  EL+  LIL SL  SY QF++N+ +N ++  
Sbjct: 131 LAEGGPVSPHVIKMVGYTQSLEKLGFPLSQELATDLILASLPESYGQFILNFHMNGLDKN 190

Query: 245 IPELINMLKIVELSVKKEPKVVMLFDSS------------KKG-SXXXXXXXXXXXXXXX 105
           + EL  MLK  E SVKK    V++   S            KKG +               
Sbjct: 191 LTELHMMLKTAEGSVKKCNNHVIMVQKSTSFKKKAKTWIKKKGKAKVSDKIQTDKPKTKT 250

Query: 104 XXXXXXKGSCHHCGEMGHWKRNCKIYLESLKK 9
                 +  C +C E+GHWKRNCK YL   K+
Sbjct: 251 KSGPTQENECFYCKELGHWKRNCKKYLADQKR 282


>gb|AAX96621.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77550176|gb|ABA92973.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 591

 Score =  192 bits (489), Expect = 1e-46
 Identities = 110/270 (40%), Positives = 151/270 (55%), Gaps = 10/270 (3%)
 Frame = -1

Query: 785 SSLNLHSILDTNKLTGQNFLDWFRNLRIVLKVEKIAYVLEGPLPTSLADDATSDQLLAYQ 606
           S+ NL SIL+  KLTG NF+DW+ NLRIVL+ E   +VL  P    L ++A + Q   ++
Sbjct: 29  SNFNLRSILEKEKLTGTNFMDWYHNLRIVLRQEHKEFVLTQPFLADLPNNAPATQRREHE 88

Query: 605 KHMIDSELASCIMLASMSPELQKQHEHMDAYTIVYHLRELFDEQARIERFEVSKLLFGSK 426
           +   +    SC+MLA+MS +LQ+Q+E +DA+TI+  LR +F++QAR ERF  SK LF  +
Sbjct: 89  RRCNEYLDISCLMLATMSLKLQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSLFACR 148

Query: 425 MQEGSSAVQFVLKMNGYIERLRSLGFAMDHELSIGLILHSLSNSYSQFVMNYRINQIEST 246
           + EG+     V+KM GY E L  LGF +  EL+  LIL SL  S+  F+MN+ +N +  T
Sbjct: 149 LAEGNPVSPHVIKMIGYTESLDKLGFPLSRELATDLILQSLPPSFEPFIMNFNMNNLNRT 208

Query: 245 IPELINMLKIVELSVKKEPKVVMLF-----DSSKKGSXXXXXXXXXXXXXXXXXXXXXKG 81
           + EL   LK  E S+KK    VM       ++ K G                       G
Sbjct: 209 LAELHVTLKTAEESIKKNSNHVMGMHKRKPNNKKSGQKRKLNSDEITTTSNSKTKVQKTG 268

Query: 80  -----SCHHCGEMGHWKRNCKIYLESLKKK 6
                 C  C E+GHWKRNCK YLE LK+K
Sbjct: 269 PAKDAECFICKEIGHWKRNCKKYLEQLKQK 298


>gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1161

 Score =  187 bits (475), Expect = 4e-45
 Identities = 98/209 (46%), Positives = 134/209 (64%)
 Frame = -1

Query: 785 SSLNLHSILDTNKLTGQNFLDWFRNLRIVLKVEKIAYVLEGPLPTSLADDATSDQLLAYQ 606
           S+ NL SIL+  KLTG NF+DW+RNLRIVL+ E   +VL  P P +L ++A + Q   ++
Sbjct: 7   SNFNLRSILEKEKLTGTNFMDWYRNLRIVLRQEHKEFVLTEPFPANLPNNAPAAQRREHE 66

Query: 605 KHMIDSELASCIMLASMSPELQKQHEHMDAYTIVYHLRELFDEQARIERFEVSKLLFGSK 426
           K   D    SC+MLA+MSPELQ+Q+E +DA+TI+  LR +F++QAR ERF  SK LF  +
Sbjct: 67  KRCNDYLDISCLMLATMSPELQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSLFACR 126

Query: 425 MQEGSSAVQFVLKMNGYIERLRSLGFAMDHELSIGLILHSLSNSYSQFVMNYRINQIEST 246
           + EG+     V+KM GY E L  LGF +  EL+  LIL SL  S+  F+MN+ +N +  T
Sbjct: 127 LAEGNLVSPHVIKMIGYTESLDKLGFPLSRELATDLILQSLPPSFEPFIMNFNMNNLNRT 186

Query: 245 IPELINMLKIVELSVKKEPKVVMLFDSSK 159
           + EL  MLK  E S+KK    VM+    K
Sbjct: 187 LAELHGMLKTAEESIKKNSNHVMVMHKRK 215


>ref|XP_006587404.1| PREDICTED: uncharacterized protein LOC102662010, partial [Glycine
           max]
          Length = 277

 Score =  179 bits (455), Expect = 8e-43
 Identities = 108/270 (40%), Positives = 155/270 (57%), Gaps = 9/270 (3%)
 Frame = -1

Query: 788 MSSLNLHSILDTNKLTGQNFLDWFRNLRIVLKVEKIAYVLEGPLPTSLADDATSDQLLAY 609
           MSSL+L  IL+  KL   N+ DW+RNLRIVL  EK+   ++ P P    D + ++    +
Sbjct: 1   MSSLSLRGILEPGKLVRANYDDWYRNLRIVLMHEKLIDTIDKP-PMEAPDLSDAEATKVF 59

Query: 608 QKHMIDSELASCIMLASMSPELQKQHEHMDAYTIVYHLRELFDEQARIERFEVSKLLFGS 429
           QK++ +   A CI+LASMS ELQ+QH+ MD Y IV HL++++  Q+R+ RF++SK LF S
Sbjct: 60  QKYLDECLTAKCIILASMSSELQRQHQDMDPYEIVEHLKKMYGGQSRMTRFQLSKALFRS 119

Query: 428 KMQEGSSAVQFVLKMNGYIERLRSLGFAMDHELSIGLILHSLSNSYSQFVMNYRINQIES 249
            +    +    VLKM   IE+L  LG  +  ELS  LI+ SLS+S+SQF++N+ +N+I  
Sbjct: 120 SLAANENVGPHVLKMIDLIEQLEKLGCTLGKELSQDLIMQSLSDSFSQFIVNFNMNKISC 179

Query: 248 TIPELINMLKIVE--LSVKKEPKVVMLF--DSSKKGSXXXXXXXXXXXXXXXXXXXXXK- 84
            + E++N+L   E  ++ KK+   VM+   +S KKG                      K 
Sbjct: 180 DLHEMLNLLIDYENQIASKKKKGTVMVVGNNSKKKGKVPKRKNLGPKGGMTKPMNKRNKI 239

Query: 83  ----GSCHHCGEMGHWKRNCKIYLESLKKK 6
                 C    E GHWKRNCK YL+SLK K
Sbjct: 240 DQTDAECFFYKEKGHWKRNCKKYLDSLKNK 269


>gb|AAO73268.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 478

 Score =  176 bits (446), Expect = 9e-42
 Identities = 93/209 (44%), Positives = 129/209 (61%)
 Frame = -1

Query: 785 SSLNLHSILDTNKLTGQNFLDWFRNLRIVLKVEKIAYVLEGPLPTSLADDATSDQLLAYQ 606
           S+ NL SIL+  KLTG NFLDW+ NLRIVL+ E   +VL  P P  L ++A + Q   ++
Sbjct: 7   SNFNLWSILEKEKLTGTNFLDWYHNLRIVLRQEHKEFVLTQPFPADLPNNAPAAQCREHE 66

Query: 605 KHMIDSELASCIMLASMSPELQKQHEHMDAYTIVYHLRELFDEQARIERFEVSKLLFGSK 426
           +   +    SC+MLA+MSPELQ+Q+E ++ +TI+  LR +F++QAR ERF  SK LF  +
Sbjct: 67  RRCNEYLDISCLMLATMSPELQRQYEALNDHTIITGLRNMFEDQARAERFNTSKFLFACR 126

Query: 425 MQEGSSAVQFVLKMNGYIERLRSLGFAMDHELSIGLILHSLSNSYSQFVMNYRINQIEST 246
           + EG+     V+KM GY E L  LGF +  EL+  LIL SL   +  F+MN+ IN +   
Sbjct: 127 LAEGNPVSLHVIKMIGYTESLDKLGFPLSRELATDLILQSLPPRFEPFIMNFNINNLNRI 186

Query: 245 IPELINMLKIVELSVKKEPKVVMLFDSSK 159
           + EL  MLK  E S+KK    VM+    K
Sbjct: 187 LAELHGMLKTAEESIKKNSNHVMVMHKRK 215


>gb|AAK52165.1|AC084831_19 putative polyprotein [Oryza sativa Japonica Group]
           gi|108709282|gb|ABF97077.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 262

 Score =  174 bits (440), Expect = 5e-41
 Identities = 93/210 (44%), Positives = 129/210 (61%)
 Frame = -1

Query: 788 MSSLNLHSILDTNKLTGQNFLDWFRNLRIVLKVEKIAYVLEGPLPTSLADDATSDQLLAY 609
           +SS NL SIL+  +LTG NF+DW+ NL IVL+ E   +VL  P P  L ++A   Q   +
Sbjct: 6   LSSFNLRSILEKEELTGTNFMDWYCNLGIVLRQEHKEFVLTQPFPADLPNNAPVAQRSEH 65

Query: 608 QKHMIDSELASCIMLASMSPELQKQHEHMDAYTIVYHLRELFDEQARIERFEVSKLLFGS 429
           +K   D    SC+MLA+MSPE Q+Q+E +DA+TI+  LR +F++QAR ERF   K LF  
Sbjct: 66  EKRCNDYLDISCLMLATMSPEFQRQYEALDAHTIITGLRNMFEDQARAERFNTLKSLFAC 125

Query: 428 KMQEGSSAVQFVLKMNGYIERLRSLGFAMDHELSIGLILHSLSNSYSQFVMNYRINQIES 249
           ++ EG+     V+KM GY E L  LG  +  EL+  LIL SL  S+  F+MN+ +N + S
Sbjct: 126 RLAEGNPVSLHVIKMIGYTESLDKLGCPLSRELATDLILQSLPPSFEPFIMNFNMNNLNS 185

Query: 248 TIPELINMLKIVELSVKKEPKVVMLFDSSK 159
           ++ EL  MLK  E S+KK    VM+    K
Sbjct: 186 SLAELHGMLKTAEESIKKNSNHVMVMHKCK 215


>ref|XP_006386829.1| hypothetical protein POPTR_0002s22700g [Populus trichocarpa]
           gi|550345621|gb|ERP64626.1| hypothetical protein
           POPTR_0002s22700g [Populus trichocarpa]
          Length = 171

 Score =  172 bits (437), Expect = 1e-40
 Identities = 81/164 (49%), Positives = 120/164 (73%)
 Frame = -1

Query: 710 LRIVLKVEKIAYVLEGPLPTSLADDATSDQLLAYQKHMIDSELASCIMLASMSPELQKQH 531
           +RI++K EK  Y+LE P+  +  +D   +    +++H+ D E  +C+MLA +S ++Q+QH
Sbjct: 1   MRIIIKQEKRMYILENPILNAPFEDVGEEFRNEHERHVDDDEQTACVMLAIISYKIQRQH 60

Query: 530 EHMDAYTIVYHLRELFDEQARIERFEVSKLLFGSKMQEGSSAVQFVLKMNGYIERLRSLG 351
           E+M+AYTI+ HL+ELFDE +R  R++ SK LF  KM +GSS    VLKMNGYIE+L  LG
Sbjct: 61  ENMNAYTIIMHLKELFDETSRTNRYQTSKELFRCKMTKGSSMNTHVLKMNGYIEKLEQLG 120

Query: 350 FAMDHELSIGLILHSLSNSYSQFVMNYRINQIESTIPELINMLK 219
           F MD +LS+ L+L SL  ++SQF+MNY +N+++ST+PEL NML+
Sbjct: 121 FVMDRKLSVELVLQSLPQNFSQFIMNYHMNKLDSTLPELFNMLR 164