BLASTX nr result
ID: Zingiber23_contig00037217
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00037217
(307 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006418005.1| hypothetical protein EUTSA_v10007424mg [Eutr... 66 4e-09
ref|XP_002889556.1| pentatricopeptide repeat-containing protein ... 66 4e-09
ref|XP_006646601.1| PREDICTED: pentatricopeptide repeat-containi... 65 1e-08
ref|NP_172051.1| pentatricopeptide repeat-containing protein [Ar... 64 2e-08
gb|EOX97373.1| Tetratricopeptide repeat (TPR)-like superfamily p... 63 4e-08
ref|XP_006306345.1| hypothetical protein CARUB_v10012229mg [Caps... 63 5e-08
ref|XP_002515072.1| pentatricopeptide repeat-containing protein,... 62 8e-08
gb|EAY76936.1| hypothetical protein OsI_04894 [Oryza sativa Indi... 62 1e-07
ref|NP_001045173.1| Os01g0913800 [Oryza sativa Japonica Group] g... 62 1e-07
ref|XP_006491362.1| PREDICTED: pentatricopeptide repeat-containi... 60 4e-07
ref|XP_006444734.1| hypothetical protein CICLE_v10019806mg [Citr... 60 4e-07
ref|XP_006357649.1| PREDICTED: pentatricopeptide repeat-containi... 59 5e-07
gb|EMJ20233.1| hypothetical protein PRUPE_ppa004557mg [Prunus pe... 59 5e-07
ref|XP_004243578.1| PREDICTED: pentatricopeptide repeat-containi... 59 5e-07
ref|XP_003614316.1| Pentatricopeptide repeat-containing protein ... 59 7e-07
ref|XP_006386647.1| hypothetical protein POPTR_0002s18000g [Popu... 59 9e-07
ref|XP_002301440.2| pentatricopeptide repeat-containing family p... 59 9e-07
ref|XP_004306649.1| PREDICTED: pentatricopeptide repeat-containi... 59 9e-07
ref|XP_004140638.1| PREDICTED: pentatricopeptide repeat-containi... 58 1e-06
gb|AFW84212.1| hypothetical protein ZEAMMB73_027046 [Zea mays] 58 1e-06
>ref|XP_006418005.1| hypothetical protein EUTSA_v10007424mg [Eutrema salsugineum]
gi|557095776|gb|ESQ36358.1| hypothetical protein
EUTSA_v10007424mg [Eutrema salsugineum]
Length = 504
Score = 66.2 bits (160), Expect = 4e-09
Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Frame = -3
Query: 284 QWPRVLTPSRLVQIIRREKDPSAALRLLDTAPLRYPSYRHNSLVYSAALDSL-LSAEPLP 108
+WPRVLTPS L QI++++K+P AL+L D A R+PSY HN VY+ + L S L
Sbjct: 5 RWPRVLTPSLLSQILKKQKNPLTALQLFDEAKERFPSYGHNGSVYATMIGILGKSNRVLE 64
Query: 107 VSAIXXXXXXXXXRESCPSPDPLFARAITALS 12
+ + +SC DP+FA AI S
Sbjct: 65 MKYV----IERMKEDSCECKDPVFASAIRTFS 92
>ref|XP_002889556.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297335398|gb|EFH65815.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 503
Score = 66.2 bits (160), Expect = 4e-09
Identities = 35/91 (38%), Positives = 52/91 (57%)
Frame = -3
Query: 284 QWPRVLTPSRLVQIIRREKDPSAALRLLDTAPLRYPSYRHNSLVYSAALDSLLSAEPLPV 105
+WPRVLTPS L QI++++K+P AL+L + A +R+PSY HN VY+ +D L ++ +
Sbjct: 4 RWPRVLTPSLLSQILKKQKNPVTALKLFEEAKVRFPSYGHNGTVYATMIDILGNSNRV-- 61
Query: 104 SAIXXXXXXXXXRESCPSPDPLFARAITALS 12
+SC D +FA AI S
Sbjct: 62 -LEMKYVIERMKGDSCECKDSVFASAIRTFS 91
>ref|XP_006646601.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g05600-like [Oryza brachyantha]
Length = 507
Score = 64.7 bits (156), Expect = 1e-08
Identities = 41/98 (41%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Frame = -3
Query: 302 MVAAVSQWPRVLTPSRLVQIIRREKDPSAALRLLDTAPLRYP--SYRHNSLVYSAALDSL 129
M A +WPRVLTP+ L IRR+KDP A+R+ +AP RYP SYRHN V+S+ L +
Sbjct: 1 MGATPVRWPRVLTPAPLAGAIRRQKDPHEAVRIYGSAPRRYPPSSYRHNDAVHSSLLAAA 60
Query: 128 LSAEPLPVSAIXXXXXXXXXRESCPSPDPLFARAITAL 15
+ LP S PS D L A +I L
Sbjct: 61 SGSALLP-------SLLRRILPSSPSADSLLAASIPHL 91
>ref|NP_172051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|334182311|ref|NP_001184914.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
gi|75213450|sp|Q9SYK1.1|PPR11_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At1g05600 gi|4836924|gb|AAD30626.1|AC007153_18
Hypothetical protein [Arabidopsis thaliana]
gi|53828567|gb|AAU94393.1| At1g05600 [Arabidopsis
thaliana] gi|56790224|gb|AAW30029.1| At1g05600
[Arabidopsis thaliana] gi|332189741|gb|AEE27862.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana] gi|332189742|gb|AEE27863.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 64.3 bits (155), Expect = 2e-08
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Frame = -3
Query: 293 AVSQWPRVLTPSRLVQIIRREKDPSAALRLLDTAPLRYPSYRHNSLVYSAALDSL-LSAE 117
+V +WPRVLTPS L QI++++K+P AL+L + A R+PSY HN VY+ +D L S
Sbjct: 2 SVVRWPRVLTPSLLSQILKKQKNPVTALKLFEEAKERFPSYGHNGSVYATMIDILGKSNR 61
Query: 116 PLPVSAIXXXXXXXXXRESCPSPDPLFARAITALS 12
L + + +SC D +FA I S
Sbjct: 62 VLEMKYV----IERMKEDSCECKDSVFASVIRTFS 92
>gb|EOX97373.1| Tetratricopeptide repeat (TPR)-like superfamily protein [Theobroma
cacao]
Length = 500
Score = 63.2 bits (152), Expect = 4e-08
Identities = 27/52 (51%), Positives = 38/52 (73%)
Frame = -3
Query: 284 QWPRVLTPSRLVQIIRREKDPSAALRLLDTAPLRYPSYRHNSLVYSAALDSL 129
+WPRVLTP+ L QIIR +K+P AL++ + A +YP+YRHN VY+ +D L
Sbjct: 4 RWPRVLTPTHLAQIIRTQKNPLTALQIFNQAQQKYPNYRHNGPVYTTMIDIL 55
>ref|XP_006306345.1| hypothetical protein CARUB_v10012229mg [Capsella rubella]
gi|482575056|gb|EOA39243.1| hypothetical protein
CARUB_v10012229mg [Capsella rubella]
Length = 503
Score = 62.8 bits (151), Expect = 5e-08
Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Frame = -3
Query: 284 QWPRVLTPSRLVQIIRREKDPSAALRLLDTAPLRYPSYRHNSLVYSAALDSL-LSAEPLP 108
+WPRVLTPS L QI++++K+P AL+L + A R+PSY HN VY+ + L S L
Sbjct: 4 RWPRVLTPSLLSQILKKQKNPVTALKLFEEAKERFPSYGHNGSVYATMIGILGKSNRVLE 63
Query: 107 VSAIXXXXXXXXXRESCPSPDPLFARAITALS 12
+ + +SC D +FA AI S
Sbjct: 64 IKYV----IERMKEDSCECKDSVFASAIRTFS 91
>ref|XP_002515072.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223545552|gb|EEF47056.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 504
Score = 62.0 bits (149), Expect = 8e-08
Identities = 34/87 (39%), Positives = 48/87 (55%)
Frame = -3
Query: 284 QWPRVLTPSRLVQIIRREKDPSAALRLLDTAPLRYPSYRHNSLVYSAALDSLLSAEPLPV 105
+WPR+LTP+ L QIIR +K+P ALR+ A +YP+YRHN VY+ + L S+ +
Sbjct: 4 RWPRLLTPTHLSQIIRNQKNPLIALRIFKEAKDKYPNYRHNGPVYATMIGILGSSGRI-- 61
Query: 104 SAIXXXXXXXXXRESCPSPDPLFARAI 24
+SC D +FA AI
Sbjct: 62 -TEMKEVLDQMREDSCECKDSIFANAI 87
>gb|EAY76936.1| hypothetical protein OsI_04894 [Oryza sativa Indica Group]
Length = 494
Score = 61.6 bits (148), Expect = 1e-07
Identities = 43/100 (43%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Frame = -3
Query: 302 MVAAVSQWPRVLTPSRLVQIIRREKDPSAALRLLDTAPLRYP--SYRHNSLVYSA--ALD 135
MVA +WPRVLTP+ L IRR+K P A+ L AP RYP SYRHN V+S+ A
Sbjct: 1 MVATPVRWPRVLTPAHLAGAIRRQKSPLDAVHLYADAPRRYPRSSYRHNDAVHSSLLAAA 60
Query: 134 SLLSAEPLPVSAIXXXXXXXXXRESCPSPDPLFARAITAL 15
S S++ LP S PS D L A +I L
Sbjct: 61 SASSSDLLP-------SLLRRILPSSPSADSLLAASIPHL 93
>ref|NP_001045173.1| Os01g0913800 [Oryza sativa Japonica Group]
gi|113534704|dbj|BAF07087.1| Os01g0913800 [Oryza sativa
Japonica Group] gi|125573082|gb|EAZ14597.1| hypothetical
protein OsJ_04520 [Oryza sativa Japonica Group]
Length = 494
Score = 61.6 bits (148), Expect = 1e-07
Identities = 43/100 (43%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Frame = -3
Query: 302 MVAAVSQWPRVLTPSRLVQIIRREKDPSAALRLLDTAPLRYP--SYRHNSLVYSA--ALD 135
MVA +WPRVLTP+ L IRR+K P A+ L AP RYP SYRHN V+S+ A
Sbjct: 1 MVATPVRWPRVLTPAHLAGAIRRQKSPLDAVHLYADAPRRYPRSSYRHNDAVHSSLLAAA 60
Query: 134 SLLSAEPLPVSAIXXXXXXXXXRESCPSPDPLFARAITAL 15
S S++ LP S PS D L A +I L
Sbjct: 61 SASSSDLLP-------SLLRRILPSSPSADSLLAASIPHL 93
>ref|XP_006491362.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g05600-like [Citrus sinensis]
Length = 504
Score = 59.7 bits (143), Expect = 4e-07
Identities = 31/87 (35%), Positives = 48/87 (55%)
Frame = -3
Query: 284 QWPRVLTPSRLVQIIRREKDPSAALRLLDTAPLRYPSYRHNSLVYSAALDSLLSAEPLPV 105
+WPR+LTP+ L QII+++K P AL++ A +YP+YRHN VY++ + L + +
Sbjct: 4 RWPRLLTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRI-- 61
Query: 104 SAIXXXXXXXXXRESCPSPDPLFARAI 24
+SC D +FA AI
Sbjct: 62 -TEMKEVIDQMKGDSCECKDSVFATAI 87
>ref|XP_006444734.1| hypothetical protein CICLE_v10019806mg [Citrus clementina]
gi|557546996|gb|ESR57974.1| hypothetical protein
CICLE_v10019806mg [Citrus clementina]
Length = 504
Score = 59.7 bits (143), Expect = 4e-07
Identities = 31/87 (35%), Positives = 48/87 (55%)
Frame = -3
Query: 284 QWPRVLTPSRLVQIIRREKDPSAALRLLDTAPLRYPSYRHNSLVYSAALDSLLSAEPLPV 105
+WPR+LTP+ L QII+++K P AL++ A +YP+YRHN VY++ + L + +
Sbjct: 4 RWPRLLTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRI-- 61
Query: 104 SAIXXXXXXXXXRESCPSPDPLFARAI 24
+SC D +FA AI
Sbjct: 62 -TEMKEVIDQMKGDSCECKDSVFATAI 87
>ref|XP_006357649.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g05600-like isoform X1 [Solanum tuberosum]
Length = 503
Score = 59.3 bits (142), Expect = 5e-07
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Frame = -3
Query: 284 QWPRVLTPSRLVQIIRREKDPSAALRLLDTAPLRYPSYRHNSLVYSAALDSL-LSAEPLP 108
+WPR+LTP +L QII +K+P AL+ D A +YP+YRHN VY ++ L S
Sbjct: 4 RWPRILTPKQLSQIILSQKNPLKALQFFDEAKCKYPTYRHNGPVYGTMINILGRSGRTTE 63
Query: 107 VSAIXXXXXXXXXRESCPSPDPLFARAI 24
+ I +SC D +F AI
Sbjct: 64 MKGI----INQMKEDSCECHDSIFVNAI 87
>gb|EMJ20233.1| hypothetical protein PRUPE_ppa004557mg [Prunus persica]
Length = 503
Score = 59.3 bits (142), Expect = 5e-07
Identities = 25/52 (48%), Positives = 37/52 (71%)
Frame = -3
Query: 284 QWPRVLTPSRLVQIIRREKDPSAALRLLDTAPLRYPSYRHNSLVYSAALDSL 129
+WPR+LTP+ L QIIR++K+P AL++ A +YP+YRHN VY+ + L
Sbjct: 4 RWPRLLTPTHLSQIIRKQKNPLTALQIFSEAKCKYPNYRHNGPVYANMISIL 55
>ref|XP_004243578.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g05600-like isoform 1 [Solanum lycopersicum]
gi|460396023|ref|XP_004243579.1| PREDICTED:
pentatricopeptide repeat-containing protein
At1g05600-like isoform 2 [Solanum lycopersicum]
Length = 503
Score = 59.3 bits (142), Expect = 5e-07
Identities = 26/52 (50%), Positives = 36/52 (69%)
Frame = -3
Query: 284 QWPRVLTPSRLVQIIRREKDPSAALRLLDTAPLRYPSYRHNSLVYSAALDSL 129
+WPR+LTP +L QII +K+P AL+ D A +YP+YRHN VYS ++ L
Sbjct: 4 RWPRILTPKQLSQIILSQKNPLKALQCFDEAKCKYPTYRHNGPVYSTMINIL 55
>ref|XP_003614316.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515651|gb|AES97274.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 504
Score = 58.9 bits (141), Expect = 7e-07
Identities = 32/87 (36%), Positives = 47/87 (54%)
Frame = -3
Query: 284 QWPRVLTPSRLVQIIRREKDPSAALRLLDTAPLRYPSYRHNSLVYSAALDSLLSAEPLPV 105
+WPRVL P+ L QIIR +K+P AL + + A L+YP Y HN VY+ ++ L ++ L
Sbjct: 6 RWPRVLNPTYLTQIIRTQKNPLKALEIFNEAKLKYPKYSHNGPVYATMINILGTSGRLKE 65
Query: 104 SAIXXXXXXXXXRESCPSPDPLFARAI 24
+ +SC D +F AI
Sbjct: 66 MS---DLIEQMKEDSCECKDSVFVSAI 89
>ref|XP_006386647.1| hypothetical protein POPTR_0002s18000g [Populus trichocarpa]
gi|550345261|gb|ERP64444.1| hypothetical protein
POPTR_0002s18000g [Populus trichocarpa]
Length = 467
Score = 58.5 bits (140), Expect = 9e-07
Identities = 31/87 (35%), Positives = 49/87 (56%)
Frame = -3
Query: 284 QWPRVLTPSRLVQIIRREKDPSAALRLLDTAPLRYPSYRHNSLVYSAALDSLLSAEPLPV 105
+WPR+LTP++L QI+R +K+P AL++ A +YPSY HN VY+ + L +++ +
Sbjct: 4 RWPRLLTPTQLSQILRCQKNPLTALQIFKDAKDKYPSYHHNGPVYATMISILGNSDRI-- 61
Query: 104 SAIXXXXXXXXXRESCPSPDPLFARAI 24
A +SC D +F AI
Sbjct: 62 -AEMKEVIDQMRDDSCECKDSVFVTAI 87
>ref|XP_002301440.2| pentatricopeptide repeat-containing family protein [Populus
trichocarpa] gi|550345260|gb|EEE80713.2|
pentatricopeptide repeat-containing family protein
[Populus trichocarpa]
Length = 503
Score = 58.5 bits (140), Expect = 9e-07
Identities = 31/87 (35%), Positives = 49/87 (56%)
Frame = -3
Query: 284 QWPRVLTPSRLVQIIRREKDPSAALRLLDTAPLRYPSYRHNSLVYSAALDSLLSAEPLPV 105
+WPR+LTP++L QI+R +K+P AL++ A +YPSY HN VY+ + L +++ +
Sbjct: 4 RWPRLLTPTQLSQILRCQKNPLTALQIFKDAKDKYPSYHHNGPVYATMISILGNSDRI-- 61
Query: 104 SAIXXXXXXXXXRESCPSPDPLFARAI 24
A +SC D +F AI
Sbjct: 62 -AEMKEVIDQMRDDSCECKDSVFVTAI 87
>ref|XP_004306649.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g05600-like [Fragaria vesca subsp. vesca]
Length = 506
Score = 58.5 bits (140), Expect = 9e-07
Identities = 31/87 (35%), Positives = 47/87 (54%)
Frame = -3
Query: 284 QWPRVLTPSRLVQIIRREKDPSAALRLLDTAPLRYPSYRHNSLVYSAALDSLLSAEPLPV 105
+WPR+L+P+ L QIIR +K+P AL++ A +YP+YRHN VY+ + L S+ +
Sbjct: 4 RWPRLLSPTNLSQIIRMQKNPLTALKIFSEAQSKYPNYRHNGPVYATVIGILGSSGRI-- 61
Query: 104 SAIXXXXXXXXXRESCPSPDPLFARAI 24
+SC D +F AI
Sbjct: 62 -TEMKEVINQMKSDSCECKDSVFVTAI 87
>ref|XP_004140638.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g05600-like [Cucumis sativus]
gi|449526108|ref|XP_004170056.1| PREDICTED:
pentatricopeptide repeat-containing protein
At1g05600-like [Cucumis sativus]
Length = 497
Score = 58.2 bits (139), Expect = 1e-06
Identities = 25/52 (48%), Positives = 35/52 (67%)
Frame = -3
Query: 284 QWPRVLTPSRLVQIIRREKDPSAALRLLDTAPLRYPSYRHNSLVYSAALDSL 129
+WPR+LTP+ L QIIR++ +P A +L A RYP YRHN VY+ ++ L
Sbjct: 4 RWPRILTPTCLSQIIRKQNNPQTAYQLFKEAKCRYPDYRHNGPVYATMINIL 55
>gb|AFW84212.1| hypothetical protein ZEAMMB73_027046 [Zea mays]
Length = 494
Score = 58.2 bits (139), Expect = 1e-06
Identities = 40/98 (40%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Frame = -3
Query: 302 MVAAVSQWPRVLTPSRLVQIIRREKDPSAALRLLDTAPLRYP-SYRHNSLVYSAALDSLL 126
M A +WPRVLTP++L IR++KDP A L AP RYP SYRHN V L +
Sbjct: 1 MGATPVRWPRVLTPAQLAGAIRQQKDPLEAAHLYWDAPRRYPHSYRHNDDVRFTLLGTAA 60
Query: 125 SAEPLPVSAIXXXXXXXXXRESCPSPDPLFARAITALS 12
+ LP S PS D L A +I LS
Sbjct: 61 GSPVLP-------SLLRRVLPSSPSADSLLAASIPKLS 91