BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00036607
         (1720 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_008567619.1| ORF3 [Piper yellow mottle virus] gi|54035746...   456   e-125
ref|YP_009002585.1| polyprotein [Hibiscus bacilliform virus GD1]...   390   e-106
emb|CAG70342.1| CP, RT, RNaseH and protease polyprotein [Cacao s...   385   e-104
gb|AFM82591.1| polyprotein [Cacao swollen shoot virus]                383   e-103
emb|CAD59232.1| polyprotein [Cacao swollen shoot virus]               381   e-103
ref|NP_041734.1| polyprotein [Cacao swollen shoot virus] gi|3478...   380   e-102
emb|CAE81279.1| polyprotein [Cacao swollen shoot virus]               378   e-102
emb|CAE76628.1| polyprotein [Cacao swollen shoot virus]               377   e-102
gb|ACH86210.1| unknown [Citrus yellow mosaic virus]                   373   e-100
gb|ACE76864.1| polyprotein [Citrus yellow mosaic virus]               372   e-100
ref|NP_569153.1| poplyprotein [Citrus yellow mosaic virus] gi|16...   370   1e-99
gb|AER00538.1| ORF III [Citrus yellow mosaic virus]                   370   1e-99
gb|ACB87156.1| polyprotein [Citrus yellow mosaic virus]               369   3e-99
gb|ACB87150.1| polyprotein [Citrus yellow mosaic virus]               368   4e-99
gb|AER00544.1| ORF III [Citrus yellow mosaic virus]                   367   8e-99
gb|ACE76858.1| polyprotein [Citrus yellow mosaic virus]               364   5e-98
ref|YP_006273075.1| polyprotein [Fig badnavirus 1] gi|333493962|...   358   5e-96
gb|ABI47986.1| ORF3 protein [Dioscorea bacilliform virus]             354   6e-95
ref|YP_001036293.1| ORF3 protein [Dioscorea bacilliform virus] g...   354   6e-95
ref|YP_003284237.1| unnamed protein product [Sugarcane bacillifo...   346   2e-92

>ref|YP_008567619.1| ORF3 [Piper yellow mottle virus] gi|540357465|gb|AGV08293.1| ORF3
            [Piper yellow mottle virus]
          Length = 1925

 Score =  456 bits (1173), Expect = e-125
 Identities = 229/443 (51%), Positives = 311/443 (70%), Gaps = 3/443 (0%)
 Frame = +3

Query: 384  EAPTTPLVEDQIREYRHNQRHLYNLQQVSRRMGQRIMGRTATQHTLEQQLNPQEQLRLSM 563
            +A    LVEDQI +YR NQR ++NL+Q  RR+       T+ Q  +EQ L+PQ+QL  SM
Sbjct: 3    QAQAKTLVEDQITQYRQNQRRMHNLRQAVRRLTNS-QASTSGQEIIEQSLDPQKQLMRSM 61

Query: 564  RERVAIAPAEVLYHSRRDDANHRVYIHRSEEAILCTDNHQVDQTFIQEESFHQLQRSKMQ 743
             +R +I PAEVLYHSR+DD NH+VYIHRSEEA+  T+ +QVD+TFIQEES  +L +S ++
Sbjct: 62   TQRASIVPAEVLYHSRKDDVNHKVYIHRSEEALSVTEGNQVDRTFIQEESHKKLVKSGIK 121

Query: 744  YIHLGVLQVRLQILHRQEEGTLALVLFHDNQWQDDRSIIATMEVDLARGSQLIYVIPDIM 923
            +IHLGVLQVRLQILHR+EEGTLALV+F DN+W+ D+ IIATMEVDL +G Q++Y+IPDIM
Sbjct: 122  FIHLGVLQVRLQILHRKEEGTLALVVFRDNRWKGDKGIIATMEVDLTKGCQMVYIIPDIM 181

Query: 924  MTIGDFFRNIHLTIATKGYETWKNGEANFLITRGLIGRLSITPNVAFAYEVNGVVDYLTS 1103
            MT+ DF+ NIH+++ T+GYE W++GEAN L+TRG+IGRLS TPNV FAY++  VVDY  +
Sbjct: 182  MTVNDFYHNIHISVLTRGYEGWQHGEANLLVTRGMIGRLSNTPNVGFAYDIQEVVDYFIT 241

Query: 1104 HGVIALPGRRYSARQLQGQNWVICPTNVVVPLQPNEVSSSNLLDGRLSISFSNYRAAPFI 1283
            HGV ALPG +Y   +LQGQ W++    ++VP +P  ++S +L+DG +S+ FSNY      
Sbjct: 242  HGVNALPGAKYDTTRLQGQQWILKKPELIVPTRPGHINSKDLVDGTISLRFSNYTTQAST 301

Query: 1284 HDATYSRNDDEALSDEEEL---RLHTVAVLIEEGLLVKRLYPSAALPRRTTAGAAGYDLP 1454
                Y+ ND+E  SDEE L         V   E L V RL P A LP RT+  AAGY+L 
Sbjct: 302  SKLKYNANDEEIQSDEEILAYIHQERQEVTTPEVLGVIRLTPEARLPVRTSPSAAGYNLF 361

Query: 1455 LNRAQDIPANSRTLLTTGLSIKAAKGTYARITARSGAALKKGILIGAEVIDSDYRGEVKI 1634
                  I    R L  TG++I+  +G Y RI ARS AA + GI++GA VID+D++GE+K+
Sbjct: 362  GTERLVIQPGERQLQRTGIAIRVPEGHYGRIAARSSAAWQLGIVVGAGVIDADFQGEIKV 421

Query: 1635 LAFNLTSQDIFLQKHECIAKRYL 1703
            L FNL++  + ++  + +A+  L
Sbjct: 422  LIFNLSNSPVEIEAGDAVAQLVL 444


>ref|YP_009002585.1| polyprotein [Hibiscus bacilliform virus GD1]
            gi|584388573|gb|AHI90954.1| polyprotein [Hibiscus
            bacilliform virus GD1]
          Length = 1892

 Score =  390 bits (1002), Expect = e-106
 Identities = 190/336 (56%), Positives = 242/336 (72%), Gaps = 1/336 (0%)
 Frame = +3

Query: 369  TRTTQEAPTTPLVEDQIREYRHNQRHLYNLQQVSRRMGQRIMGRTATQHTLEQQLNPQEQ 548
            TR  Q    TPL EDQIR+YR++QR  Y  Q+  RR+ +RI GR   Q TLEQ+++PQ  
Sbjct: 17   TRRQQGERETPLFEDQIRDYRNSQRRAYTTQRAVRRLRRRITGRQPYQETLEQEVDPQAD 76

Query: 549  LRLSMRERVAIAPAEVLYHSRRDDANHRVYIHRSEEAILCTDNHQVDQTFIQEESFHQLQ 728
            L++SM+ER  + PAEVLY SRRD  +HRVY HRSEEAILCTD +QVD+TFIQ ES   LQ
Sbjct: 77   LQMSMQERARLVPAEVLYRSRRDTIHHRVYSHRSEEAILCTDGNQVDRTFIQPESMEALQ 136

Query: 729  RSKMQYIHLGVLQVRLQILHRQEEGTLALVLFHDNQWQDDRSIIATMEVDLARGSQLIYV 908
            R+ + +IH+G++QVRLQILHRQ EGT+ALV+F D +W  D+SI ATMEVDL  G Q+IYV
Sbjct: 137  RTGISFIHIGIMQVRLQILHRQNEGTMALVVFRDTRWNGDQSIFATMEVDLTEGRQIIYV 196

Query: 909  IPDIMMTIGDFFRNIHLTIATKGYETWKNGEANFLITRGLIGRLSITPNVAFAYEVNGVV 1088
            +PD MMTIGDF RNI ++I T+GY  W+NGEAN L+TRG++GRLS TPNVAFAYE+  V 
Sbjct: 197  VPDTMMTIGDFARNIQISILTRGYSNWQNGEANLLVTRGIVGRLSNTPNVAFAYEIGNVT 256

Query: 1089 DYLTSHGVIALPGRRYSARQLQGQNWVICPTNVV-VPLQPNEVSSSNLLDGRLSISFSNY 1265
            DYLTS GV A+ GRRY +R+LQ Q W++ P  V  +P  P  V + NL+DG +S+ F +Y
Sbjct: 257  DYLTSQGVQAIAGRRYDSRELQNQQWILRPPQVERLPQAPKNVDTRNLIDGSISLRFRDY 316

Query: 1266 RAAPFIHDATYSRNDDEALSDEEELRLHTVAVLIEE 1373
                     +Y+  D+E   DEE+L  H VA  +EE
Sbjct: 317  ATTSTPELPSYNEQDEEVDPDEEQLMEHVVAAFVEE 352


>emb|CAG70342.1| CP, RT, RNaseH and protease polyprotein [Cacao swollen shoot virus]
          Length = 1868

 Score =  385 bits (990), Expect = e-104
 Identities = 188/346 (54%), Positives = 252/346 (72%), Gaps = 2/346 (0%)
 Frame = +3

Query: 336  RINKNHEMTTKTRTTQEAPTTPLVEDQIREYRHNQRHLYNLQQVSRRMGQRIMGRTATQH 515
            R    H + + T T+++    PL EDQIR+YR  QR ++NL++ +RR+ + + G +  Q 
Sbjct: 3    RARTQHSVPSVTSTSEQQREGPLYEDQIRDYRRGQRRIFNLRRQARRLRRSVTG-SRYQE 61

Query: 516  TLEQQLNPQEQLRLSMRERVAIAPAEVLYHSRRDDANHRVYIHRSEEAILCTDNHQVDQT 695
            TLEQ+++PQ  LRLSM+ER  + PAEVLY SRRD  +HRVY HRSEE++LC  N+QVD+ 
Sbjct: 62   TLEQEIDPQTTLRLSMQERARLVPAEVLYRSRRDTVHHRVYTHRSEESVLCIGNNQVDRA 121

Query: 696  FIQEESFHQLQRSKMQYIHLGVLQVRLQILHRQEEGTLALVLFHDNQWQDDRSIIATMEV 875
            FIQ ES  QLQR+ M +IH+G+LQVR+QILHRQEEGT+ALV+F DN+W  D+SI A ME+
Sbjct: 122  FIQPESLEQLQRTGMSFIHIGILQVRIQILHRQEEGTMALVVFRDNRWTGDQSIFAQMEI 181

Query: 876  DLARGSQLIYVIPDIMMTIGDFFRNIHLTIATKGYETWKNGEANFLITRGLIGRLSITPN 1055
            DL +GSQL++V+PD MMTIGDF RN+ L+I T+GYE+W+NGEAN LITRG+ GRLS TPN
Sbjct: 182  DLTKGSQLVFVVPDTMMTIGDFARNVQLSILTRGYESWQNGEANLLITRGMTGRLSNTPN 241

Query: 1056 VAFAYEVNGVVDYLTSHGVIALPGRRYSARQLQGQNWVICPTNV-VVPLQPNEVSSSNLL 1232
            VAFAY++    DYL SHGV A+ G++ + + L+ Q W++ P    V P+QP  V + NL+
Sbjct: 242  VAFAYQIASATDYLASHGVKAIAGKKLNLQHLRNQQWILRPPQADVTPMQPRSVETRNLV 301

Query: 1233 DGRLSISFSNYRAAPFIHDATYSRNDDEALSD-EEELRLHTVAVLI 1367
            DG +SI F +Y AAP      Y+  D+E  S+ E E+R HTVAV I
Sbjct: 302  DGSISIRFHDYEAAPSTSRPHYNEEDEEIESEAESEIRDHTVAVWI 347


>gb|AFM82591.1| polyprotein [Cacao swollen shoot virus]
          Length = 1872

 Score =  383 bits (983), Expect = e-103
 Identities = 188/344 (54%), Positives = 249/344 (72%), Gaps = 3/344 (0%)
 Frame = +3

Query: 345  KNHEMTTKTRTTQEAPTTPLVEDQIREYRHNQRHLYNLQQVSRRMGQRIMG-RTATQHTL 521
            + H+M + T T  E    PL EDQ+R YR NQR L+NL++ +RR  + + G R+  Q TL
Sbjct: 5    RTHQMPSVTTTVNEQGEGPLFEDQVRNYRRNQRRLFNLRKKARRAQKALTGSRSRHQETL 64

Query: 522  EQQLNPQEQLRLSMRERVAIAPAEVLYHSRRDDANHRVYIHRSEEAILCTDNHQVDQTFI 701
            EQ+++PQ  LRLSM+ER  + PAEVLY SRRD  +HRVY HRSEE+ILC   +QVD+TFI
Sbjct: 65   EQEIDPQVTLRLSMQERARLVPAEVLYRSRRDTVHHRVYTHRSEESILCVGGNQVDRTFI 124

Query: 702  QEESFHQLQRSKMQYIHLGVLQVRLQILHRQEEGTLALVLFHDNQWQDDRSIIATMEVDL 881
            Q  S  +LQR+ M +IH+G+LQVR+QILHRQEEGT+ALV+F DN+W  D++I A MEVDL
Sbjct: 125  QPSSLERLQRTGMSFIHIGILQVRIQILHRQEEGTMALVVFRDNRWAGDQAIFAQMEVDL 184

Query: 882  ARGSQLIYVIPDIMMTIGDFFRNIHLTIATKGYETWKNGEANFLITRGLIGRLSITPNVA 1061
             +GSQL++V+PD MMTIGDF RN+ L+I T+GY+ W+NGEAN L+TR + GRLS TPNVA
Sbjct: 185  TKGSQLVFVVPDTMMTIGDFARNVQLSILTRGYDNWQNGEANLLVTRSMTGRLSNTPNVA 244

Query: 1062 FAYEVNGVVDYLTSHGVIALPGRRYSARQLQGQNWVICPTNV-VVPLQPNEVSSSNLLDG 1238
            FA ++    DYL SHGV A+ G++ + +QL+ Q WV+ P    V+P+QP  V + NL+DG
Sbjct: 245  FACQIASATDYLASHGVKAIAGKKVNLQQLRNQQWVLRPPQADVLPMQPRSVETRNLIDG 304

Query: 1239 RLSISFSNYRAAPFIHDATYSRNDDEALSDEE-ELRLHTVAVLI 1367
             +SI F +Y  AP      Y+ ND+E  S+ E E+R HTVAV I
Sbjct: 305  SISIRFHDYEVAPSTSGPHYNENDEEVESESEAEIREHTVAVWI 348


>emb|CAD59232.1| polyprotein [Cacao swollen shoot virus]
          Length = 1839

 Score =  381 bits (979), Expect = e-103
 Identities = 190/349 (54%), Positives = 249/349 (71%), Gaps = 3/349 (0%)
 Frame = +3

Query: 336  RINKNHEMTTKTRTTQEAPTT-PLVEDQIREYRHNQRHLYNLQQVSRRMGQRIMGRTATQ 512
            R    H + + T TT E     PL EDQIR+YR  QR ++NLQ+ +RR+ + +MG +  Q
Sbjct: 3    RARPQHPIPSVTTTTSERNREGPLYEDQIRDYRRGQRRIFNLQRRARRLRRSMMG-SRYQ 61

Query: 513  HTLEQQLNPQEQLRLSMRERVAIAPAEVLYHSRRDDANHRVYIHRSEEAILCTDNHQVDQ 692
             TLEQ+++PQ  LRLSM+ER  + PAEVLY SRRD  +HRVY HRSEE++LC    QVD+
Sbjct: 62   ETLEQEIDPQTTLRLSMQERARLVPAEVLYRSRRDTVHHRVYTHRSEESVLCVGGSQVDR 121

Query: 693  TFIQEESFHQLQRSKMQYIHLGVLQVRLQILHRQEEGTLALVLFHDNQWQDDRSIIATME 872
             FIQ ES  QLQR+ M +IH+G+LQVR+QILHRQEEGT+ALV+F DN+W  D+SI A ME
Sbjct: 122  AFIQPESLEQLQRTGMSFIHIGILQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQME 181

Query: 873  VDLARGSQLIYVIPDIMMTIGDFFRNIHLTIATKGYETWKNGEANFLITRGLIGRLSITP 1052
            +DL +GSQL++VIPD MMTIGDF RN+ L+I T+GYE W+NGEAN LITRG+ GRLS TP
Sbjct: 182  IDLTKGSQLVFVIPDTMMTIGDFARNVQLSILTRGYENWQNGEANLLITRGMTGRLSNTP 241

Query: 1053 NVAFAYEVNGVVDYLTSHGVIALPGRRYSARQLQGQNWVICPTNV-VVPLQPNEVSSSNL 1229
            NVAFAY++    DYL SHGV A+ G++ + + L+ Q W++ P    + P+QP  V + NL
Sbjct: 242  NVAFAYQIASATDYLASHGVKAIAGKKMNLQHLRNQQWILRPPQTDITPMQPRSVETRNL 301

Query: 1230 LDGRLSISFSNYRAAPFIHDATYSRNDDEALSD-EEELRLHTVAVLIEE 1373
            +DG +SI F +Y AA       Y+  D+E  S+ E E+R HT+AV I E
Sbjct: 302  VDGSISIRFHDYEAATSASRPHYNEEDEEVESETESEIREHTIAVWIGE 350


>ref|NP_041734.1| polyprotein [Cacao swollen shoot virus] gi|347871|gb|AAA03171.1|
            polyprotein [Cacao swollen shoot virus]
          Length = 1834

 Score =  380 bits (975), Expect = e-102
 Identities = 189/349 (54%), Positives = 249/349 (71%), Gaps = 3/349 (0%)
 Frame = +3

Query: 336  RINKNHEMTTKTRTTQEAPTT-PLVEDQIREYRHNQRHLYNLQQVSRRMGQRIMGRTATQ 512
            R    H + + T TT E     PL EDQIR+YR  QR ++NL++ +RR+ + +MG +  Q
Sbjct: 3    RARPQHPVPSVTTTTSEQNREGPLYEDQIRDYRRGQRRIFNLRRRARRLRRSMMG-SRYQ 61

Query: 513  HTLEQQLNPQEQLRLSMRERVAIAPAEVLYHSRRDDANHRVYIHRSEEAILCTDNHQVDQ 692
             TLEQ+++PQ  LRLSM+ER  + PAEVLY SRRD  +HRVY HRSEE++LC    QVD+
Sbjct: 62   ETLEQEIDPQTTLRLSMQERARLVPAEVLYRSRRDTVHHRVYTHRSEESVLCVGGSQVDR 121

Query: 693  TFIQEESFHQLQRSKMQYIHLGVLQVRLQILHRQEEGTLALVLFHDNQWQDDRSIIATME 872
             FIQ ES  QLQR+ M +IH+G+LQVR+QILHRQEEGT+ALV+F DN+W  D+SI A ME
Sbjct: 122  AFIQPESLEQLQRTGMSFIHIGILQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQME 181

Query: 873  VDLARGSQLIYVIPDIMMTIGDFFRNIHLTIATKGYETWKNGEANFLITRGLIGRLSITP 1052
            +DL +GSQL++VIPD MMTIGDF RN+ L+I T+GYE W+NGEAN LITRG+ GRLS TP
Sbjct: 182  IDLTKGSQLVFVIPDTMMTIGDFARNVQLSILTRGYENWQNGEANLLITRGMTGRLSNTP 241

Query: 1053 NVAFAYEVNGVVDYLTSHGVIALPGRRYSARQLQGQNWVICPTNV-VVPLQPNEVSSSNL 1229
            NVAFAY++    DYL SHGV A+ G++ + + L+ Q W++ P    + P+QP  V + NL
Sbjct: 242  NVAFAYQIASATDYLASHGVKAIAGKKMNLQHLRNQQWILRPPQTDITPMQPRSVETRNL 301

Query: 1230 LDGRLSISFSNYRAAPFIHDATYSRNDDEALSD-EEELRLHTVAVLIEE 1373
            +DG +SI F +Y AA       Y+  D+E  S+ E E+R HT+AV I E
Sbjct: 302  VDGSISIRFHDYEAATSASRPHYNEEDEEVESETESEIREHTIAVWIGE 350


>emb|CAE81279.1| polyprotein [Cacao swollen shoot virus]
          Length = 1816

 Score =  378 bits (971), Expect = e-102
 Identities = 185/335 (55%), Positives = 247/335 (73%), Gaps = 2/335 (0%)
 Frame = +3

Query: 375  TTQEAPTTPLVEDQIREYRHNQRHLYNLQQVSRRMGQRIMGRTATQHTLEQQLNPQEQLR 554
            T+++    PL EDQIR+YR +QR ++NL++ +RR+ + +MG +  Q TLEQ+++PQ  LR
Sbjct: 17   TSEQNREGPLYEDQIRDYRRSQRRIFNLRRRARRLRRSMMG-SRYQETLEQEIDPQTTLR 75

Query: 555  LSMRERVAIAPAEVLYHSRRDDANHRVYIHRSEEAILCTDNHQVDQTFIQEESFHQLQRS 734
            LSM+ER  + PAEVLY SRRD  +HRVY HRSEE++LC   +QVD+ FIQ ES  QLQR+
Sbjct: 76   LSMQERARLVPAEVLYRSRRDTVHHRVYTHRSEESVLCVGGNQVDRAFIQPESLEQLQRT 135

Query: 735  KMQYIHLGVLQVRLQILHRQEEGTLALVLFHDNQWQDDRSIIATMEVDLARGSQLIYVIP 914
             M +IH+G+LQVR+QILHRQEEGT+ALV+F DN+W  D+SI A ME+DL +GSQL++VIP
Sbjct: 136  GMSFIHIGILQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLVFVIP 195

Query: 915  DIMMTIGDFFRNIHLTIATKGYETWKNGEANFLITRGLIGRLSITPNVAFAYEVNGVVDY 1094
            D MMTIGDF RN+ L+I T+GYE W+NGEAN LITRG+ GRLS TPNVAFAY++    DY
Sbjct: 196  DTMMTIGDFARNVQLSILTRGYENWQNGEANLLITRGMTGRLSNTPNVAFAYQIASATDY 255

Query: 1095 LTSHGVIALPGRRYSARQLQGQNWVICPTNV-VVPLQPNEVSSSNLLDGRLSISFSNYRA 1271
            L SHGV A+ G++ + + L+ Q W++ P    + P+QP  V + NL+DG +SI F +Y A
Sbjct: 256  LASHGVKAIAGKKMNLQHLRNQQWILRPPQADITPMQPRSVETRNLVDGSISIRFHDYEA 315

Query: 1272 APFIHDATYSRNDDEALSD-EEELRLHTVAVLIEE 1373
            A       Y+  D+E  S+ E E+R HTVAV I E
Sbjct: 316  ATSTSRPHYNEEDEEVESETESEIREHTVAVWIGE 350


>emb|CAE76628.1| polyprotein [Cacao swollen shoot virus]
          Length = 1847

 Score =  377 bits (968), Expect = e-102
 Identities = 184/327 (56%), Positives = 243/327 (74%), Gaps = 2/327 (0%)
 Frame = +3

Query: 399  PLVEDQIREYRHNQRHLYNLQQVSRRMGQRIMGRTATQHTLEQQLNPQEQLRLSMRERVA 578
            PL EDQIR+YR +QR ++NL++ +RR+ + +MG +  Q TLEQ+++PQ  LRLSM+ER  
Sbjct: 25   PLYEDQIRDYRRSQRRIFNLRRNARRLRRSMMG-SRYQETLEQEIDPQTTLRLSMQERAR 83

Query: 579  IAPAEVLYHSRRDDANHRVYIHRSEEAILCTDNHQVDQTFIQEESFHQLQRSKMQYIHLG 758
            + PAEVLY SRRD  +HRVY HRSEE++LC   +QVD+ FIQ ES  QLQR+ M +IH+G
Sbjct: 84   LVPAEVLYRSRRDTVHHRVYTHRSEESVLCVGGNQVDRAFIQPESLEQLQRTGMSFIHIG 143

Query: 759  VLQVRLQILHRQEEGTLALVLFHDNQWQDDRSIIATMEVDLARGSQLIYVIPDIMMTIGD 938
            +LQVR+QILHRQEEGT+ALV+F DN+W  D+SI A ME+DL +GSQL++VIPD MMTIGD
Sbjct: 144  ILQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLVFVIPDTMMTIGD 203

Query: 939  FFRNIHLTIATKGYETWKNGEANFLITRGLIGRLSITPNVAFAYEVNGVVDYLTSHGVIA 1118
            F RN+ L+I T+GYE W+NGEAN LITRG+ GRLS TPNVAFAY++    DYL SHGV A
Sbjct: 204  FARNVQLSILTRGYENWQNGEANLLITRGMTGRLSNTPNVAFAYQIASATDYLASHGVKA 263

Query: 1119 LPGRRYSARQLQGQNWVICPTNV-VVPLQPNEVSSSNLLDGRLSISFSNYRAAPFIHDAT 1295
            + G++ + + L+ Q W++ P    + P+QP  V + NL+DG +SI F +Y AA       
Sbjct: 264  IAGKKMNLQHLRNQQWILRPPQADITPMQPRSVETRNLVDGSISIRFHDYEAATSTSRPH 323

Query: 1296 YSRNDDEALSD-EEELRLHTVAVLIEE 1373
            Y+  D+E  S+ E E+R HTVAV I E
Sbjct: 324  YNEEDEEVESETESEIREHTVAVWIGE 350


>gb|ACH86210.1| unknown [Citrus yellow mosaic virus]
          Length = 463

 Score =  373 bits (958), Expect = e-100
 Identities = 195/391 (49%), Positives = 263/391 (67%), Gaps = 18/391 (4%)
 Frame = +3

Query: 369  TRTTQEAPTTPLVEDQIREYRHNQRHLYNLQQVSRRMGQRIMGRTATQHTLEQQLNPQEQ 548
            T   +E   TPL +DQIR+YR  QR  +N+    RR  Q ++GR   Q TLEQ ++P+  
Sbjct: 18   TARVEERNNTPLYDDQIRDYRQWQRRRHNM---GRRWNQ-LIGRPYNQ-TLEQVVDPEVA 72

Query: 549  LRLSMRERVAIAPAEVLYHSRRDDANHRVYIHRSEEAILCTDNHQVDQTFIQEESFHQLQ 728
            L+LSM+ER  + PAEVLY SR DD +H+VYIHRSEEAILC D  QVD+  IQ ES  QL 
Sbjct: 73   LQLSMQERARLVPAEVLYRSRNDDRHHQVYIHRSEEAILCVDGDQVDRLLIQPESAEQLN 132

Query: 729  RSKMQYIHLGVLQVRLQILHRQEEGTLALVLFHDNQWQDDRSIIATMEVDLARGSQLIYV 908
            RS M +IH+G++QVR+QILHRQ EGT ALV+F DN+WQ D+SI ATME+DL +G Q++Y+
Sbjct: 133  RSGMSFIHMGIVQVRIQILHRQHEGTTALVVFRDNRWQGDQSIFATMELDLTKGMQMVYI 192

Query: 909  IPDIMMTIGDFFRNIHLTIATKGYETWKNGEANFLITRGLIGRLSITPNVAFAYEVNGVV 1088
            IPD MMT+ DF RN+ ++I TKGY  W+NGEAN L+TRG++GRLS TPNVAFAY++  V 
Sbjct: 193  IPDTMMTVRDFCRNVQISILTKGYGNWQNGEANLLVTRGIVGRLSNTPNVAFAYQIQNVT 252

Query: 1089 DYLTSHGVIALPGRRYSARQLQGQNWVICPTNV-VVPLQPNEVSSSNLLDGRLSISFSNY 1265
            DYL SHG+ ALPGRRYS+  +QGQ W + P+N+  VP+ P  V + N++DG +S+ F++Y
Sbjct: 253  DYLVSHGIQALPGRRYSSADVQGQQWFLRPSNIPAVPMAPTNVDTRNMIDGSISLRFNSY 312

Query: 1266 RAAPFIHDATYSRNDDEAL--SDEEELRLHTVAVLIEEG--------------LLVKRLY 1397
            + AP      Y+++D+E     DEE++R HT+A+  EE                 V+   
Sbjct: 313  QPAPDPAPVAYNQHDEEVPLDEDEEQIRNHTIALWREENEVWDTLGAPSGKFDFYVRYTR 372

Query: 1398 PSAALPRRTTAGAAGY-DLPLNRAQDIPANS 1487
            P+ AL       A G+ DL  N +   P+N+
Sbjct: 373  PAHALQNPAHIIATGWDDLDNNPSPSSPSNA 403


>gb|ACE76864.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1968

 Score =  372 bits (954), Expect = e-100
 Identities = 184/338 (54%), Positives = 245/338 (72%), Gaps = 3/338 (0%)
 Frame = +3

Query: 369  TRTTQEAPTTPLVEDQIREYRHNQRHLYNLQQVSRRMGQRIMGRTATQHTLEQQLNPQEQ 548
            T    E   TPL +DQIR+YR  QR  +N+    RR  Q ++GR   Q TLEQ ++P+  
Sbjct: 18   TSRVDERDNTPLYDDQIRDYRQWQRRRHNM---GRRWNQ-LIGRPYNQ-TLEQVVDPEVA 72

Query: 549  LRLSMRERVAIAPAEVLYHSRRDDANHRVYIHRSEEAILCTDNHQVDQTFIQEESFHQLQ 728
            L+LSM+ER  + PAEVLY SR DD +H+VYIHRSEEAILC D  QVD+  IQ ES  QL 
Sbjct: 73   LQLSMQERARLVPAEVLYRSRSDDRHHQVYIHRSEEAILCVDGDQVDRLLIQPESAEQLN 132

Query: 729  RSKMQYIHLGVLQVRLQILHRQEEGTLALVLFHDNQWQDDRSIIATMEVDLARGSQLIYV 908
            RS M +IH+G++QVR+QILHRQ EGT ALV+F DN+WQ D+SI ATME+DL +G Q++Y+
Sbjct: 133  RSGMSFIHMGIVQVRIQILHRQHEGTTALVVFRDNRWQGDQSIFATMELDLTKGMQMVYI 192

Query: 909  IPDIMMTIGDFFRNIHLTIATKGYETWKNGEANFLITRGLIGRLSITPNVAFAYEVNGVV 1088
            IPD MMT+ DF RN+ ++I TKGY  W+NGEAN L+TRG++GRLS TPNVAFAY++  V 
Sbjct: 193  IPDTMMTVRDFCRNVQISILTKGYGNWQNGEANLLVTRGIVGRLSNTPNVAFAYQIQNVT 252

Query: 1089 DYLTSHGVIALPGRRYSARQLQGQNWVICPTNV-VVPLQPNEVSSSNLLDGRLSISFSNY 1265
            DYL SHG+ ALPGRRYS+  +QGQ W + P+N+  VP+ P  V + N++DG +S+ F++Y
Sbjct: 253  DYLVSHGIQALPGRRYSSADVQGQQWFLRPSNIPAVPMAPTNVDTRNMIDGSISLRFNSY 312

Query: 1266 RAAPFIHDATYSRNDDEAL--SDEEELRLHTVAVLIEE 1373
            + AP      Y+++D+E     DEE++R HT+A+  EE
Sbjct: 313  QPAPDPAPVAYNQHDEEVPLDEDEEQIRNHTIALWREE 350


>ref|NP_569153.1| poplyprotein [Citrus yellow mosaic virus]
            gi|16416939|gb|AAL18495.1|AF347695_3 unknown [citrus
            yellow mosaic virus]
          Length = 1983

 Score =  370 bits (950), Expect = 1e-99
 Identities = 182/338 (53%), Positives = 245/338 (72%), Gaps = 3/338 (0%)
 Frame = +3

Query: 369  TRTTQEAPTTPLVEDQIREYRHNQRHLYNLQQVSRRMGQRIMGRTATQHTLEQQLNPQEQ 548
            T   +E   TPL +DQIR+YR  QR  +N+    RR  Q ++GR   Q TLEQ ++P+  
Sbjct: 18   TARVEERDNTPLYDDQIRDYRQWQRRRHNM---GRRWNQ-LIGRPYNQ-TLEQVVDPEVA 72

Query: 549  LRLSMRERVAIAPAEVLYHSRRDDANHRVYIHRSEEAILCTDNHQVDQTFIQEESFHQLQ 728
            L+LSM+ER  + PAEVLY SR DD +H+VYIH+SEEAILC D  QVD+  IQ ES  QL 
Sbjct: 73   LQLSMQERARLVPAEVLYRSRTDDRHHQVYIHKSEEAILCVDGDQVDRLLIQPESAEQLS 132

Query: 729  RSKMQYIHLGVLQVRLQILHRQEEGTLALVLFHDNQWQDDRSIIATMEVDLARGSQLIYV 908
            RS M +IH+G++QVR+QILHRQ EGT ALV+F DN+WQ D+SI ATME+DL +G Q++Y+
Sbjct: 133  RSGMSFIHMGIVQVRIQILHRQHEGTTALVVFRDNRWQGDQSIFATMELDLTKGMQMVYI 192

Query: 909  IPDIMMTIGDFFRNIHLTIATKGYETWKNGEANFLITRGLIGRLSITPNVAFAYEVNGVV 1088
            IPD MMT+ DF RN+ ++I TKGY  W+NGEAN L+TRG++GRLS TPNVAFAY++  V 
Sbjct: 193  IPDTMMTVRDFCRNVQISILTKGYGNWQNGEANLLVTRGIVGRLSNTPNVAFAYQIQNVT 252

Query: 1089 DYLTSHGVIALPGRRYSARQLQGQNWVICPTNV-VVPLQPNEVSSSNLLDGRLSISFSNY 1265
            DYL SHG+ ALPGRRYS   +QGQ W + P+N+  VP+ P  V + N++DG +S+ F++Y
Sbjct: 253  DYLVSHGIQALPGRRYSTADIQGQQWFLRPSNIPAVPMAPTNVDTRNMIDGSISLRFNSY 312

Query: 1266 RAAPFIHDATYSRNDDEAL--SDEEELRLHTVAVLIEE 1373
            + AP      Y+++D+E     DEE++R HT+A+  E+
Sbjct: 313  QPAPDPTPVAYNQHDEEVPPDEDEEQIRNHTIALWRED 350


>gb|AER00538.1| ORF III [Citrus yellow mosaic virus]
          Length = 1982

 Score =  370 bits (949), Expect = 1e-99
 Identities = 183/338 (54%), Positives = 245/338 (72%), Gaps = 3/338 (0%)
 Frame = +3

Query: 369  TRTTQEAPTTPLVEDQIREYRHNQRHLYNLQQVSRRMGQRIMGRTATQHTLEQQLNPQEQ 548
            T   +E   TPL +DQIR+YR  Q+  +N+    RR  Q ++GR   Q TLEQ ++P+  
Sbjct: 18   TSRVEERDNTPLYDDQIRDYRQWQQRRHNM---GRRWNQ-LIGRPYNQ-TLEQVVDPEVA 72

Query: 549  LRLSMRERVAIAPAEVLYHSRRDDANHRVYIHRSEEAILCTDNHQVDQTFIQEESFHQLQ 728
            L+LSM+ER  + PAEVLY SR DD +H+VYIHRSEEAILC D  QVD+  IQ ES  QL 
Sbjct: 73   LQLSMQERARLVPAEVLYRSRSDDRHHQVYIHRSEEAILCVDGDQVDRLLIQPESAEQLN 132

Query: 729  RSKMQYIHLGVLQVRLQILHRQEEGTLALVLFHDNQWQDDRSIIATMEVDLARGSQLIYV 908
            RS M +IH+G++QVR+QILHRQ EGT ALV+F DN+WQ D+SI ATME+DL +G Q++Y+
Sbjct: 133  RSGMPFIHMGIVQVRIQILHRQHEGTTALVVFRDNRWQGDQSIFATMELDLTKGMQMVYI 192

Query: 909  IPDIMMTIGDFFRNIHLTIATKGYETWKNGEANFLITRGLIGRLSITPNVAFAYEVNGVV 1088
            IPD MMT+ DF RN+ ++I TKGY  W+NGEAN L+TRG++GRLS TPNVAFAY++  V 
Sbjct: 193  IPDTMMTVRDFCRNVQISILTKGYGNWQNGEANLLVTRGIVGRLSNTPNVAFAYQIQNVT 252

Query: 1089 DYLTSHGVIALPGRRYSARQLQGQNWVICPTNV-VVPLQPNEVSSSNLLDGRLSISFSNY 1265
            DYL SHG+ ALPGRRYSA  +QGQ W + P+N+  VP+ P  V + N++DG +S+ F +Y
Sbjct: 253  DYLVSHGIQALPGRRYSAADVQGQQWFLRPSNIPAVPMAPTNVGTRNMIDGSISLRFHSY 312

Query: 1266 RAAPFIHDATYSRNDDEAL--SDEEELRLHTVAVLIEE 1373
            + AP      Y+++D+E     DEE++R HT+A+  E+
Sbjct: 313  QPAPDPTPVAYNQHDEEVPPDEDEEQIRNHTIALWRED 350


>gb|ACB87156.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1979

 Score =  369 bits (946), Expect = 3e-99
 Identities = 182/334 (54%), Positives = 244/334 (73%), Gaps = 3/334 (0%)
 Frame = +3

Query: 369  TRTTQEAPTTPLVEDQIREYRHNQRHLYNLQQVSRRMGQRIMGRTATQHTLEQQLNPQEQ 548
            T   +E   TPL +DQIR+YR  QR  +N+    RR  Q ++GR   Q TLEQ ++P+  
Sbjct: 18   TSRVEERDNTPLYDDQIRDYRQWQRRRHNM---GRRWNQ-LIGRPYNQ-TLEQVVDPEVA 72

Query: 549  LRLSMRERVAIAPAEVLYHSRRDDANHRVYIHRSEEAILCTDNHQVDQTFIQEESFHQLQ 728
            L+LSM+ER  + PAEVLY SR DD +H+VYIHRSEEAILC D  QVD+  IQ ES  QL 
Sbjct: 73   LQLSMQERARLVPAEVLYRSRSDDRHHQVYIHRSEEAILCVDGDQVDRLLIQPESAEQLN 132

Query: 729  RSKMQYIHLGVLQVRLQILHRQEEGTLALVLFHDNQWQDDRSIIATMEVDLARGSQLIYV 908
            RS M +I++G++QVR+QILHRQ EGT ALV+F DN+WQ D+SI ATME+DL +G Q++Y+
Sbjct: 133  RSGMSFINMGIVQVRIQILHRQHEGTTALVVFRDNRWQGDQSIFATMELDLTKGMQMVYI 192

Query: 909  IPDIMMTIGDFFRNIHLTIATKGYETWKNGEANFLITRGLIGRLSITPNVAFAYEVNGVV 1088
            IPD MMT+ DF RN+ ++I TKGY  W+NGEAN L+TRG++GRLS TPNVAFAY++  V 
Sbjct: 193  IPDTMMTVRDFCRNVQISILTKGYGNWQNGEANLLVTRGIVGRLSNTPNVAFAYQIQNVT 252

Query: 1089 DYLTSHGVIALPGRRYSARQLQGQNWVICPTNV-VVPLQPNEVSSSNLLDGRLSISFSNY 1265
            DYL SHG+ ALPGRRYSA  +QGQ W + P+N+  VP+ P  V + N++DG +S+ F++Y
Sbjct: 253  DYLVSHGIQALPGRRYSAADVQGQQWFLRPSNIPAVPMAPTNVDTRNMIDGSISLRFNSY 312

Query: 1266 RAAPFIHDATYSRNDDEAL--SDEEELRLHTVAV 1361
            + AP      Y+++D+E     DEE++R HT+A+
Sbjct: 313  QPAPDPAPVAYNQHDEEIPPDEDEEQIRNHTIAL 346


>gb|ACB87150.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1976

 Score =  368 bits (945), Expect = 4e-99
 Identities = 182/334 (54%), Positives = 244/334 (73%), Gaps = 3/334 (0%)
 Frame = +3

Query: 369  TRTTQEAPTTPLVEDQIREYRHNQRHLYNLQQVSRRMGQRIMGRTATQHTLEQQLNPQEQ 548
            T   +E   TPL +DQIR+YR  QR  +N+    RR  Q ++GR   Q TLEQ ++P+  
Sbjct: 18   TSRVEERDNTPLYDDQIRDYRQWQRRRHNM---GRRWNQ-LIGRPYNQ-TLEQVVDPEVA 72

Query: 549  LRLSMRERVAIAPAEVLYHSRRDDANHRVYIHRSEEAILCTDNHQVDQTFIQEESFHQLQ 728
            L+LSM+ER  + PAEVLY SR DD +H+VYIHRSEEAILC D  QVD+  IQ ES  QL 
Sbjct: 73   LQLSMQERARLVPAEVLYRSRSDDRHHQVYIHRSEEAILCVDGDQVDRLLIQPESAEQLN 132

Query: 729  RSKMQYIHLGVLQVRLQILHRQEEGTLALVLFHDNQWQDDRSIIATMEVDLARGSQLIYV 908
            RS M +I++G++QVR+QILHRQ EGT ALV+F DN+WQ D+SI ATME+DL +G Q++Y+
Sbjct: 133  RSGMSFINMGIVQVRIQILHRQHEGTTALVVFRDNRWQGDQSIFATMELDLTKGMQMVYI 192

Query: 909  IPDIMMTIGDFFRNIHLTIATKGYETWKNGEANFLITRGLIGRLSITPNVAFAYEVNGVV 1088
            IPD MMT+ DF RN+ ++I TK Y  W+NGEAN L+TRG++GRLS TPNVAFAY++  V 
Sbjct: 193  IPDTMMTVRDFCRNVQISILTKAYGNWQNGEANLLVTRGIVGRLSNTPNVAFAYQIQNVT 252

Query: 1089 DYLTSHGVIALPGRRYSARQLQGQNWVICPTNV-VVPLQPNEVSSSNLLDGRLSISFSNY 1265
            DYL SHG+ ALPGRRYSA  +QGQ W + P+N+  VP+ P  V + N++DG +S+ F++Y
Sbjct: 253  DYLVSHGIQALPGRRYSAADVQGQQWFLRPSNIPAVPMAPTNVDTRNMIDGSISLRFNSY 312

Query: 1266 RAAPFIHDATYSRNDDEAL--SDEEELRLHTVAV 1361
            + AP     TY+++D+E     DEE++R HT+A+
Sbjct: 313  QPAPDPAPVTYNQHDEEIPPDEDEEQIRNHTIAL 346


>gb|AER00544.1| ORF III [Citrus yellow mosaic virus]
          Length = 1976

 Score =  367 bits (942), Expect = 8e-99
 Identities = 181/334 (54%), Positives = 243/334 (72%), Gaps = 3/334 (0%)
 Frame = +3

Query: 369  TRTTQEAPTTPLVEDQIREYRHNQRHLYNLQQVSRRMGQRIMGRTATQHTLEQQLNPQEQ 548
            T   +E   TPL +DQIR+YR  Q+  +N+    RR  Q ++GR   Q TLEQ ++P+  
Sbjct: 18   TSRVEERDNTPLYDDQIRDYRQWQQRRHNM---GRRWNQ-LIGRPYNQ-TLEQVVDPEVA 72

Query: 549  LRLSMRERVAIAPAEVLYHSRRDDANHRVYIHRSEEAILCTDNHQVDQTFIQEESFHQLQ 728
            L+LSM+ER  + PAEVLY SR DD +H+VYIHRSEEAILC D  QVD+  IQ ES  QL 
Sbjct: 73   LQLSMQERARLVPAEVLYRSRSDDRHHQVYIHRSEEAILCVDGDQVDRLLIQPESAEQLN 132

Query: 729  RSKMQYIHLGVLQVRLQILHRQEEGTLALVLFHDNQWQDDRSIIATMEVDLARGSQLIYV 908
            RS M +IH+G++QVR+ ILHRQ EGT ALV+F DN+WQ D+SI ATME+DL +G Q++Y+
Sbjct: 133  RSGMPFIHMGIVQVRIPILHRQHEGTTALVVFRDNRWQGDQSIFATMELDLTKGMQMVYI 192

Query: 909  IPDIMMTIGDFFRNIHLTIATKGYETWKNGEANFLITRGLIGRLSITPNVAFAYEVNGVV 1088
            IPD MMT+ DF RN+ ++I TKGY  W+NGEAN L+TRG++GRLS TPNVAFAY++  V 
Sbjct: 193  IPDTMMTVRDFCRNVQISILTKGYGNWQNGEANLLVTRGIVGRLSNTPNVAFAYQIQNVT 252

Query: 1089 DYLTSHGVIALPGRRYSARQLQGQNWVICPTNV-VVPLQPNEVSSSNLLDGRLSISFSNY 1265
            DYL SHG+ ALPGRRYSA  +QGQ W + P+N+  VP+ P  V + N++DG +S+ F++Y
Sbjct: 253  DYLVSHGIQALPGRRYSAADVQGQQWFLRPSNIPAVPMAPTNVDTRNMIDGSISLRFNSY 312

Query: 1266 RAAPFIHDATYSRNDDEAL--SDEEELRLHTVAV 1361
            + AP      Y+++D+E     DEE++R HT+A+
Sbjct: 313  QPAPDPAPVAYNQHDEEIPPDEDEEQIRNHTIAL 346


>gb|ACE76858.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1967

 Score =  364 bits (935), Expect = 5e-98
 Identities = 182/338 (53%), Positives = 243/338 (71%), Gaps = 3/338 (0%)
 Frame = +3

Query: 369  TRTTQEAPTTPLVEDQIREYRHNQRHLYNLQQVSRRMGQRIMGRTATQHTLEQQLNPQEQ 548
            T   +E   TPL +DQIR+YR  QR  +N+    RR  Q +MGR   Q TLEQ ++P+  
Sbjct: 18   TSRVEERNNTPLYDDQIRDYRQWQRRRHNM---GRRWNQ-LMGRPYNQ-TLEQVVDPEVA 72

Query: 549  LRLSMRERVAIAPAEVLYHSRRDDANHRVYIHRSEEAILCTDNHQVDQTFIQEESFHQLQ 728
            L+LSM+ER  + PAEVLY SR DD +H+VYIHRSEEAILC D  QVD+  IQ ES  QL 
Sbjct: 73   LQLSMQERARLVPAEVLYRSRNDDRHHQVYIHRSEEAILCVDGDQVDRLLIQPESAEQLN 132

Query: 729  RSKMQYIHLGVLQVRLQILHRQEEGTLALVLFHDNQWQDDRSIIATMEVDLARGSQLIYV 908
            RS M +IH+G++QVR+QILHRQ EGT ALV+F DN+WQ D+SI ATME+DL +G Q++Y+
Sbjct: 133  RSGMSFIHMGIVQVRIQILHRQHEGTTALVVFRDNRWQGDQSIFATMELDLTKGMQMVYI 192

Query: 909  IPDIMMTIGDFFRNIHLTIATKGYETWKNGEANFLITRGLIGRLSITPNVAFAYEVNGVV 1088
            IPD MMT+ DF RN+ ++I TKGY  W+NGEAN L+TRG++GRLS TP VAFAY++  V 
Sbjct: 193  IPDTMMTVRDFCRNVQISILTKGYGNWQNGEANLLVTRGIVGRLSNTPIVAFAYQIQNVT 252

Query: 1089 DYLTSHGVIALPGRRYSARQLQGQNWVICPTNVVV-PLQPNEVSSSNLLDGRLSISFSNY 1265
            DYL SHG+ ALPGRRYSA  +QGQ W + P+N+   P+ P  V++ N++DG +S+ F++Y
Sbjct: 253  DYLVSHGIQALPGRRYSAADVQGQQWFLRPSNIPADPMAPTNVATRNMIDGSISLRFNSY 312

Query: 1266 RAAPFIHDATYSRNDDEAL--SDEEELRLHTVAVLIEE 1373
            + AP      Y+++D+E     DEE++R H  A+  E+
Sbjct: 313  QPAPDPAPIAYNQHDEEIPPDEDEEQIRNHITALWRED 350


>ref|YP_006273075.1| polyprotein [Fig badnavirus 1] gi|333493962|gb|AEF56561.1|
            polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  358 bits (918), Expect = 5e-96
 Identities = 182/325 (56%), Positives = 229/325 (70%), Gaps = 3/325 (0%)
 Frame = +3

Query: 399  PLVEDQIREYRHNQRHLYNLQQVSRRMGQRIMGRTATQHTLEQQLNPQEQLRLSMRERVA 578
            PL EDQIR+YR NQR  +  +Q  RR   R+ GR   Q TLEQ ++P+ +L  SM+ER  
Sbjct: 27   PLFEDQIRDYRRNQRRRFVAEQAVRRTMGRMRGRRYNQ-TLEQIVDPEVELNQSMQERAN 85

Query: 579  IAPAEVLYHSRRDDANHRVYIHRSEEAILCTDNHQVDQTFIQEESFHQLQRSKMQYIHLG 758
            + PAEVLY SRRD+ NH++Y HRSEEA+LC    Q D+ FIQ  SF +LQRS MQ+IHLG
Sbjct: 86   LVPAEVLYRSRRDNINHQIYNHRSEEAMLCVGEQQ-DRMFIQPNSFQELQRSGMQFIHLG 144

Query: 759  VLQVRLQILHRQEEGTLALVLFHDNQWQDDRSIIATMEVDLARGSQLIYVIPDIMMTIGD 938
            VLQVRLQILHR + GT+ALV+F DN+WQ D+SI A  EVDL RGSQ++YVIPD MM IGD
Sbjct: 145  VLQVRLQILHRADGGTMALVVFRDNRWQGDQSIFAISEVDLTRGSQIVYVIPDTMMIIGD 204

Query: 939  FFRNIHLTIATKGYETWKNGEANFLITRGLIGRLSITPNVAFAYEVNGVVDYLTSHGVIA 1118
            F+RN+ ++I T GYE W+NGEAN LITRG+ GRLS TPNV FAY ++ V DYL S GV A
Sbjct: 205  FYRNVQISIQTSGYENWQNGEANLLITRGMTGRLSNTPNVGFAYRISHVTDYLASRGVQA 264

Query: 1119 LPGRRYSARQLQGQNWVICPTNVVVPLQPNEVSSSNLLDGRLSISFSNYRAAPFIHDATY 1298
            LPGRRY +  L+G+NW+I    +   + P  V + NL+DG +S   ++Y  AP      Y
Sbjct: 265  LPGRRYRSEMLRGRNWIIRQPQIQAAMMPRNVETRNLIDGTISARSADYTQAPEPRQPHY 324

Query: 1299 SRNDDEALSDEEEL---RLHTVAVL 1364
            +  D+E  SDEEEL   + H VA+L
Sbjct: 325  NEQDEEVASDEEELAETQQHIVAML 349


>gb|ABI47986.1| ORF3 protein [Dioscorea bacilliform virus]
          Length = 1295

 Score =  354 bits (909), Expect = 6e-95
 Identities = 192/445 (43%), Positives = 280/445 (62%), Gaps = 1/445 (0%)
 Frame = +3

Query: 363  TKTRTTQEAPTTPLVEDQIREYRHNQRHLYNLQQVSRRMGQRIMGRTATQHTLEQQLNPQ 542
            ++T T + + +    EDQIR+YR   R  YNL+Q   +    +   T    TLEQQ++P+
Sbjct: 2    SRTATQEVSTSQRQFEDQIRDYRLGARRRYNLRQGLNKFKNVLTLGTYYAPTLEQQVDPE 61

Query: 543  EQLRLSMRERVAIAPAEVLYHSRRDDANHRVYIHRSEEAILCTDNHQVDQTFIQEESFHQ 722
              L+LS  +R ++ PAEVLYH+R D  NH+VY+H SEEA L  +N Q D TFI+ ES+ +
Sbjct: 62   RTLQLSAIKRASMIPAEVLYHARPDTINHKVYMHWSEEADLIANN-QHDSTFIRPESYLE 120

Query: 723  LQRSKMQYIHLGVLQVRLQILHRQEEGTLALVLFHDNQWQDDRSIIATMEVDLARGSQLI 902
            L+++ MQ+IH+G++QVR+Q+LHR E GT+AL++F D  W+  RS IA MEVDL +GSQL+
Sbjct: 121  LRKANMQFIHIGLMQVRIQVLHRHEAGTMALIVFRDCSWKGRRSTIARMEVDLTKGSQLV 180

Query: 903  YVIPDIMMTIGDFFRNIHLTIATKGYETWKNGEANFLITRGLIGRLSITPNVAFAYEVNG 1082
            Y+ P+I   + DF+ NI ++I TKGY+ ++N EAN LIT+G+IGRLS T NV FAY V+G
Sbjct: 181  YIAPNITKKLTDFYNNIQVSILTKGYDDYQNSEANLLITKGMIGRLSNTSNVGFAYTVDG 240

Query: 1083 VVDYLTSHGVIALPGRRYSARQLQGQNWVICPTNVVVPLQPNEVSSSNLLDGRLSISFSN 1262
            V +Y  +HGV AL G   +   LQG  W I P+ ++VP QP +     L DG +S+ F  
Sbjct: 241  VAEYFITHGVQALKGMPMTTDDLQGTLWNIKPSRIIVPSQPTQAEDRELADGSVSMRFGA 300

Query: 1263 YRAAPFIHDATYSRNDDEALSDEEE-LRLHTVAVLIEEGLLVKRLYPSAALPRRTTAGAA 1439
            Y+AAP +       + +E  SDE + + + T  V     LL+K ++  A +P+R T G+ 
Sbjct: 301  YKAAPAL------MSSEEFDSDENQVINVFTTTV---SSLLIKLMHRDAIIPQRITDGSV 351

Query: 1440 GYDLPLNRAQDIPANSRTLLTTGLSIKAAKGTYARITARSGAALKKGILIGAEVIDSDYR 1619
            GYDL       I     TL+ TG++I+   GTYA++  +S  ALK G+ I   V+D DYR
Sbjct: 352  GYDLAACEDVVIQPRRPTLVKTGIAIEVPAGTYAQLYLKSSFALKTGLQITGGVVDPDYR 411

Query: 1620 GEVKILAFNLTSQDIFLQKHECIAK 1694
            GE++I+  N T   + + K   +A+
Sbjct: 412  GELQIILINNTFTCVPILKGTFVAQ 436


>ref|YP_001036293.1| ORF3 protein [Dioscorea bacilliform virus]
            gi|113901272|gb|ABI47983.1| ORF3 protein [Dioscorea
            bacilliform virus]
          Length = 1887

 Score =  354 bits (909), Expect = 6e-95
 Identities = 191/444 (43%), Positives = 278/444 (62%)
 Frame = +3

Query: 363  TKTRTTQEAPTTPLVEDQIREYRHNQRHLYNLQQVSRRMGQRIMGRTATQHTLEQQLNPQ 542
            ++T T + + +    EDQIR+YR   R  YNL+Q   +    +   T    TLEQQ++P+
Sbjct: 2    SRTATQEVSTSQRQFEDQIRDYRLGARRRYNLRQGLNKFKNVLTLGTYYAPTLEQQVDPE 61

Query: 543  EQLRLSMRERVAIAPAEVLYHSRRDDANHRVYIHRSEEAILCTDNHQVDQTFIQEESFHQ 722
              L+LS  +R ++ PAEVLYH+R D  NH+VY+H SEEA L  +N Q D TFI+ ES+ +
Sbjct: 62   RTLQLSAIKRASMIPAEVLYHARPDTVNHKVYMHWSEEADLIVNN-QHDSTFIRPESYLE 120

Query: 723  LQRSKMQYIHLGVLQVRLQILHRQEEGTLALVLFHDNQWQDDRSIIATMEVDLARGSQLI 902
            L+++ MQ+IH+G++QVR+Q+LHR E GT+AL++F D  W+  RS IA MEVDL +GSQL+
Sbjct: 121  LRKANMQFIHIGLMQVRIQVLHRHEAGTMALIVFRDCSWKGRRSTIARMEVDLTKGSQLV 180

Query: 903  YVIPDIMMTIGDFFRNIHLTIATKGYETWKNGEANFLITRGLIGRLSITPNVAFAYEVNG 1082
            Y+ P+I   + DF+ NI ++I TKGY+ ++N EAN LIT+G+IGRLS T NV FAY V+G
Sbjct: 181  YIAPNITKKLTDFYNNIQVSILTKGYDDYQNSEANLLITKGMIGRLSNTSNVGFAYTVDG 240

Query: 1083 VVDYLTSHGVIALPGRRYSARQLQGQNWVICPTNVVVPLQPNEVSSSNLLDGRLSISFSN 1262
            V +Y  +HGV AL G   +   LQG  W I P+ ++VP QP +     L DG +S+ F  
Sbjct: 241  VAEYFITHGVQALKGMPMTTDDLQGTLWNIKPSRIIVPSQPTQAEDRELADGSVSMRFGA 300

Query: 1263 YRAAPFIHDATYSRNDDEALSDEEELRLHTVAVLIEEGLLVKRLYPSAALPRRTTAGAAG 1442
            Y+AAP +       + +E  SDE +  +  V       LL+K ++  A +P+R T G+ G
Sbjct: 301  YKAAPAL------MSSEEFDSDENQ--VINVLTTTVSSLLIKLMHRDAIIPQRITDGSVG 352

Query: 1443 YDLPLNRAQDIPANSRTLLTTGLSIKAAKGTYARITARSGAALKKGILIGAEVIDSDYRG 1622
            YDL       I     TL+ TG++I+   GTYA++  +S  ALK G+ I   V+D DYRG
Sbjct: 353  YDLAACEDVVIQPRRPTLVKTGIAIEVPAGTYAQLYLKSSFALKTGLQITGGVVDPDYRG 412

Query: 1623 EVKILAFNLTSQDIFLQKHECIAK 1694
            E++I+  N T   + + K   +A+
Sbjct: 413  ELQIILINNTFTCVPILKGTFVAQ 436


>ref|YP_003284237.1| unnamed protein product [Sugarcane bacilliform virus]
            gi|240114281|gb|ACS44708.1| ORF3 protein [Sugarcane
            bacilliform virus]
          Length = 1792

 Score =  346 bits (888), Expect = 2e-92
 Identities = 179/341 (52%), Positives = 240/341 (70%), Gaps = 4/341 (1%)
 Frame = +3

Query: 363  TKTRTTQEAPTTPLVEDQIREYRHNQRHLYNLQQVSRRMG---QRIMGRTATQHTLEQQL 533
            T ++T  E P  PLVEDQIR+YR  QR  +   +V+R +G   + I+GR   +HTL   +
Sbjct: 10   TSSQTVTE-PGQPLVEDQIRDYRRAQRARHEAARVARNIGNIGRTIVGRQPREHTLALLM 68

Query: 534  NPQEQLRLSMRERVAIAPAEVLYHSRRDDANHRVYIHRSEEAILCTDNHQVDQTFIQEES 713
            NP+ +L+ SM+ER    PAEVLY +RRDD +HRVY HRSEE +L   N Q D+TFIQ+ES
Sbjct: 69   NPEVELQRSMQERARTVPAEVLYMTRRDDIHHRVYHHRSEERMLVLRNDQQDRTFIQQES 128

Query: 714  FHQLQRSKMQYIHLGVLQVRLQILHRQEEGTLALVLFHDNQW-QDDRSIIATMEVDLARG 890
            +  L ++ ++YIHLGVLQVR QILHR+  GT+A ++F D +W +DDRSIIA MEVDLA G
Sbjct: 129  YEALAQAGLEYIHLGVLQVRFQILHRRYAGTVAFLVFRDTRWNEDDRSIIAAMEVDLAEG 188

Query: 891  SQLIYVIPDIMMTIGDFFRNIHLTIATKGYETWKNGEANFLITRGLIGRLSITPNVAFAY 1070
            +QL+YVIPDIMMTI DF+R+I ++I TKGY+TW+ GEAN LITR +  RLS TPNV FAY
Sbjct: 189  NQLVYVIPDIMMTIKDFYRHIQISIKTKGYDTWEGGEANLLITRSITSRLSNTPNVGFAY 248

Query: 1071 EVNGVVDYLTSHGVIALPGRRYSARQLQGQNWVICPTNVVVPLQPNEVSSSNLLDGRLSI 1250
            ++  V +YL S GV A+   ++SA+Q QG  W + P+ VVVP+QP+ +++S   DG +SI
Sbjct: 249  KIERVAEYLRSKGVKAINATKHSAKQFQGGEWTLKPSRVVVPMQPSSMNTSTKYDGSISI 308

Query: 1251 SFSNYRAAPFIHDATYSRNDDEALSDEEELRLHTVAVLIEE 1373
             F +Y A+       Y+  DDE  SDEE    HT+A++ EE
Sbjct: 309  RFGDYEASTSSRPPKYNTADDEIDSDEE----HTIAMITEE 345