BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00036602
         (382 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002531123.1| chromodomain helicase DNA binding protein, p...   102   5e-20
gb|EMJ15547.1| hypothetical protein PRUPE_ppa000116mg [Prunus pe...   100   2e-19
ref|XP_002300156.2| hypothetical protein POPTR_0001s26030g [Popu...    99   5e-19
ref|XP_004291747.1| PREDICTED: chromodomain-helicase-DNA-binding...    99   5e-19
ref|XP_002275100.1| PREDICTED: chromodomain-helicase-DNA-binding...    99   8e-19
emb|CAN76895.1| hypothetical protein VITISV_009954 [Vitis vinifera]    99   8e-19
gb|EXB55506.1| Chromodomain-helicase-DNA-binding protein 1 [Moru...    98   1e-18
gb|EOY32820.1| Chromatin remodeling complex subunit isoform 2 [T...    95   8e-18
gb|EOY32819.1| Chromatin remodeling complex subunit isoform 1 [T...    95   8e-18
ref|XP_004491263.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain...    92   6e-17
ref|XP_002313369.1| hypothetical protein POPTR_0009s05250g [Popu...    91   2e-16
ref|XP_006470732.1| PREDICTED: chromodomain-helicase-DNA-binding...    90   3e-16
ref|XP_006446246.1| hypothetical protein CICLE_v100140192mg, par...    90   3e-16
ref|XP_003617298.1| Chromodomain-helicase-DNA-binding protein [M...    89   5e-16
ref|XP_004252878.1| PREDICTED: chromodomain-helicase-DNA-binding...    87   2e-15
ref|XP_006349779.1| PREDICTED: chromodomain-helicase-DNA-binding...    86   7e-15
ref|XP_002885872.1| hypothetical protein ARALYDRAFT_480306 [Arab...    85   1e-14
gb|ESW13477.1| hypothetical protein PHAVU_008G199800g [Phaseolus...    82   7e-14
ref|XP_003600162.1| DNA-directed RNA polymerase [Medicago trunca...    82   1e-13
ref|XP_006296589.1| hypothetical protein CARUB_v10012803mg [Caps...    81   1e-13

>ref|XP_002531123.1| chromodomain helicase DNA binding protein, putative [Ricinus
           communis] gi|223529287|gb|EEF31257.1| chromodomain
           helicase DNA binding protein, putative [Ricinus
           communis]
          Length = 1718

 Score =  102 bits (254), Expect = 5e-20
 Identities = 54/122 (44%), Positives = 68/122 (55%), Gaps = 16/122 (13%)
 Frame = +1

Query: 1   WGSKFWKDCQPM-----SDSEYD-----------RNNIGNEESGRNSSEDSHEQRHRRLS 132
           WGS FWKDCQP+     SDS +D            +N+ +   G   SED   Q+     
Sbjct: 92  WGSSFWKDCQPLGAQGASDSAHDSKSDYKIAEGSEDNMSDGRDGTLESEDEEGQKDLNKG 151

Query: 133 QRGNVDIPADEMLSDDYYEQDGEEQSDSVHGSGQNHTNISGSRFPLKPVSVNKKTAKKSR 312
           Q+G  D+PADEMLSD+YYEQDGE+QSDS+H  G  H+    SR  LKP  V    ++ SR
Sbjct: 152 QKGQSDVPADEMLSDEYYEQDGEDQSDSIHYRGFGHSVGLNSRLHLKPAPVKNNFSRSSR 211

Query: 313 VI 318
            I
Sbjct: 212 AI 213


>gb|EMJ15547.1| hypothetical protein PRUPE_ppa000116mg [Prunus persica]
          Length = 1761

 Score =  100 bits (249), Expect = 2e-19
 Identities = 57/124 (45%), Positives = 75/124 (60%), Gaps = 18/124 (14%)
 Frame = +1

Query: 1   WGSKFWKDCQPM-------------SDSEYDRNNIGNEESGRNSSED-----SHEQRHRR 126
           WGS FWKDCQPM             S S+Y RN +G+E++  +  ED      +++    
Sbjct: 97  WGSTFWKDCQPMCSQGGSDSGQETKSGSDY-RNVVGSEDNSSDVREDRIDFEDNDRPKVS 155

Query: 127 LSQRGNVDIPADEMLSDDYYEQDGEEQSDSVHGSGQNHTNISGSRFPLKPVSVNKKTAKK 306
             QRG+ DIPADEMLSD+YYEQDGEEQSDS+H  G +H+  S SR   KP +V+    + 
Sbjct: 156 KGQRGHSDIPADEMLSDEYYEQDGEEQSDSMHYRGFHHSVGSNSRPQSKPAAVSNHALRT 215

Query: 307 SRVI 318
           SRV+
Sbjct: 216 SRVL 219


>ref|XP_002300156.2| hypothetical protein POPTR_0001s26030g [Populus trichocarpa]
           gi|550348207|gb|EEE84961.2| hypothetical protein
           POPTR_0001s26030g [Populus trichocarpa]
          Length = 1767

 Score = 99.4 bits (246), Expect = 5e-19
 Identities = 54/120 (45%), Positives = 71/120 (59%), Gaps = 16/120 (13%)
 Frame = +1

Query: 1   WGSKFWKDCQPM-----SDSEYD-----RNNIGNEESGRNS------SEDSHEQRHRRLS 132
           WGS FWKDCQPM     SDS  D     RN +G++++  N       SED   Q+     
Sbjct: 91  WGSSFWKDCQPMGNPGASDSGQDSKSEGRNAVGSDDNVSNGRDDRLDSEDEEGQKEAGKG 150

Query: 133 QRGNVDIPADEMLSDDYYEQDGEEQSDSVHGSGQNHTNISGSRFPLKPVSVNKKTAKKSR 312
            +G+ D+PADEMLSD+YYEQDGE+QSDSVH  G + +    SR   KPV +    +++SR
Sbjct: 151 GKGHSDVPADEMLSDEYYEQDGEDQSDSVHYRGFSQSVDLSSRLQKKPVPIKNNVSRRSR 210


>ref|XP_004291747.1| PREDICTED: chromodomain-helicase-DNA-binding protein 2-like
           [Fragaria vesca subsp. vesca]
          Length = 1746

 Score = 99.4 bits (246), Expect = 5e-19
 Identities = 58/122 (47%), Positives = 73/122 (59%), Gaps = 19/122 (15%)
 Frame = +1

Query: 1   WGSKFWKDCQPM-------------SDSEYDRNNIGNEESGRNSSEDSHEQRHR-----R 126
           WGS FWKDCQPM             S SEY RN +G+E++  +  ED  +         R
Sbjct: 97  WGSTFWKDCQPMCPQGGSDSGQDTKSGSEY-RNAVGSEDNSSDVREDRLDSEDDAGPKVR 155

Query: 127 LSQRGNVDIPADEMLSDDYYEQDGEEQSDSVHGSGQNHTNISGSRFPLKPVSV-NKKTAK 303
             QRG+ DIPADEMLSD+YYEQDGEEQSDS+H  G +H+  S SR   KP  + N +T++
Sbjct: 156 KGQRGHSDIPADEMLSDEYYEQDGEEQSDSMHYRGFHHSVGSTSRLQAKPAPITNHRTSR 215

Query: 304 KS 309
            S
Sbjct: 216 LS 217


>ref|XP_002275100.1| PREDICTED: chromodomain-helicase-DNA-binding protein 2-like [Vitis
           vinifera]
          Length = 1764

 Score = 98.6 bits (244), Expect = 8e-19
 Identities = 54/111 (48%), Positives = 70/111 (63%), Gaps = 8/111 (7%)
 Frame = +1

Query: 1   WGSKFWKDCQPM-----SDSEYD---RNNIGNEESGRNSSEDSHEQRHRRLSQRGNVDIP 156
           WGS FWKDCQPM     S+SE D   R +  NEE+  ++S D  E       Q+G  D+P
Sbjct: 96  WGSTFWKDCQPMGHRNGSESEQDSKCRFDCKNEEALEDNSSDGREVDK---VQKGQNDVP 152

Query: 157 ADEMLSDDYYEQDGEEQSDSVHGSGQNHTNISGSRFPLKPVSVNKKTAKKS 309
           ADEM SDDYYEQDGE+QSDS+H  G NH+++  S+   +PV+VN     K+
Sbjct: 153 ADEMSSDDYYEQDGEDQSDSLHYRGLNHSSVLNSQPQSRPVAVNMARNSKA 203


>emb|CAN76895.1| hypothetical protein VITISV_009954 [Vitis vinifera]
          Length = 626

 Score = 98.6 bits (244), Expect = 8e-19
 Identities = 54/111 (48%), Positives = 70/111 (63%), Gaps = 8/111 (7%)
 Frame = +1

Query: 1   WGSKFWKDCQPM-----SDSEYD---RNNIGNEESGRNSSEDSHEQRHRRLSQRGNVDIP 156
           WGS FWKDCQPM     S+SE D   R +  NEE+  ++S D  E       Q+G  D+P
Sbjct: 137 WGSTFWKDCQPMGHRNGSESEQDSKCRFDCKNEEALEDNSSDGREVDK---VQKGQNDVP 193

Query: 157 ADEMLSDDYYEQDGEEQSDSVHGSGQNHTNISGSRFPLKPVSVNKKTAKKS 309
           ADEM SDDYYEQDGE+QSDS+H  G NH+++  S+   +PV+VN     K+
Sbjct: 194 ADEMSSDDYYEQDGEDQSDSLHYRGLNHSSVLNSQPQSRPVAVNMARNSKA 244


>gb|EXB55506.1| Chromodomain-helicase-DNA-binding protein 1 [Morus notabilis]
          Length = 1754

 Score = 98.2 bits (243), Expect = 1e-18
 Identities = 52/122 (42%), Positives = 70/122 (57%), Gaps = 16/122 (13%)
 Frame = +1

Query: 1   WGSKFWKDCQPMS----------------DSEYDRNNIGNEESGRNSSEDSHEQRHRRLS 132
           WGS FWKDCQPM                 D  YD ++ G E+  R  SED    ++    
Sbjct: 48  WGSTFWKDCQPMHSQNALDSGQDSDYRNVDGSYDNSSDGREQ--RLDSEDDDGPKYAGKG 105

Query: 133 QRGNVDIPADEMLSDDYYEQDGEEQSDSVHGSGQNHTNISGSRFPLKPVSVNKKTAKKSR 312
           Q+G  D+  DEMLSD+YYEQDG+EQSDSV+  G +++ +S SR  LKP + NK   + SR
Sbjct: 106 QQGPSDVATDEMLSDEYYEQDGKEQSDSVNYRGFHNSTVSNSRPQLKPAAFNKNIVRASR 165

Query: 313 VI 318
           ++
Sbjct: 166 IM 167


>gb|EOY32820.1| Chromatin remodeling complex subunit isoform 2 [Theobroma cacao]
          Length = 1810

 Score = 95.1 bits (235), Expect = 8e-18
 Identities = 51/122 (41%), Positives = 71/122 (58%), Gaps = 16/122 (13%)
 Frame = +1

Query: 1   WGSKFWKDCQPMS---------DSEYDRNNI-------GNEESGRNSSEDSHEQRHRRLS 132
           WGS FWKDCQPM          DS+ D  N+        ++   R  S+D   Q+    +
Sbjct: 95  WGSTFWKDCQPMDRQGGSDSGQDSKSDHKNLEVLEYNSSDDRDDRLESDDDEAQKEVGKA 154

Query: 133 QRGNVDIPADEMLSDDYYEQDGEEQSDSVHGSGQNHTNISGSRFPLKPVSVNKKTAKKSR 312
           QRG+ D+PADEMLSD+YYEQDGEEQSD++H  G +++    +R   KPV V+   ++ SR
Sbjct: 155 QRGHSDVPADEMLSDEYYEQDGEEQSDTMHYRGFSNSVGLNTRPQSKPVCVSTTVSRGSR 214

Query: 313 VI 318
            +
Sbjct: 215 AL 216


>gb|EOY32819.1| Chromatin remodeling complex subunit isoform 1 [Theobroma cacao]
           gi|508785565|gb|EOY32821.1| Chromatin remodeling complex
           subunit isoform 1 [Theobroma cacao]
          Length = 1768

 Score = 95.1 bits (235), Expect = 8e-18
 Identities = 51/122 (41%), Positives = 71/122 (58%), Gaps = 16/122 (13%)
 Frame = +1

Query: 1   WGSKFWKDCQPMS---------DSEYDRNNI-------GNEESGRNSSEDSHEQRHRRLS 132
           WGS FWKDCQPM          DS+ D  N+        ++   R  S+D   Q+    +
Sbjct: 95  WGSTFWKDCQPMDRQGGSDSGQDSKSDHKNLEVLEYNSSDDRDDRLESDDDEAQKEVGKA 154

Query: 133 QRGNVDIPADEMLSDDYYEQDGEEQSDSVHGSGQNHTNISGSRFPLKPVSVNKKTAKKSR 312
           QRG+ D+PADEMLSD+YYEQDGEEQSD++H  G +++    +R   KPV V+   ++ SR
Sbjct: 155 QRGHSDVPADEMLSDEYYEQDGEEQSDTMHYRGFSNSVGLNTRPQSKPVCVSTTVSRGSR 214

Query: 313 VI 318
            +
Sbjct: 215 AL 216


>ref|XP_004491263.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
           protein 1-like [Cicer arietinum]
          Length = 1738

 Score = 92.4 bits (228), Expect = 6e-17
 Identities = 55/124 (44%), Positives = 70/124 (56%), Gaps = 19/124 (15%)
 Frame = +1

Query: 1   WGSKFWKDCQPM-------------SDSEYDRNNIGNE------ESGRNSSEDSHEQRHR 123
           WGS FWKDCQPM             S S+Y RN  G+E      E+GR  SED  E++  
Sbjct: 97  WGSTFWKDCQPMRPQNGSESGKESKSGSDY-RNAGGSEDNSLDGETGRLDSEDDVEKKDA 155

Query: 124 RLSQRGNVDIPADEMLSDDYYEQDGEEQSDSVHGSGQNHTNISGSRFPLKPVSVNKKTAK 303
               R + D+PAD+MLSD+YYEQDGE+QSDS+H +G +      S       SVN+   K
Sbjct: 156 GKGPRSHSDVPADQMLSDEYYEQDGEDQSDSLHYNGIHKPAGPNSWSRKMSTSVNRNVRK 215

Query: 304 KSRV 315
           KSR+
Sbjct: 216 KSRI 219


>ref|XP_002313369.1| hypothetical protein POPTR_0009s05250g [Populus trichocarpa]
           gi|222849777|gb|EEE87324.1| hypothetical protein
           POPTR_0009s05250g [Populus trichocarpa]
          Length = 1748

 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 49/118 (41%), Positives = 63/118 (53%), Gaps = 16/118 (13%)
 Frame = +1

Query: 1   WGSKFWKDCQPM-----SDSEYD-----------RNNIGNEESGRNSSEDSHEQRHRRLS 132
           WGS FWKDCQPM     SDS  D            +N+ N   GR  SED   Q+     
Sbjct: 91  WGSSFWKDCQPMATPGASDSRQDSKSEDRNAEGSEDNVSNGRDGRLESEDEEGQKEVGRG 150

Query: 133 QRGNVDIPADEMLSDDYYEQDGEEQSDSVHGSGQNHTNISGSRFPLKPVSVNKKTAKK 306
            +G+ D+PADEMLSD+YYEQDGE+QSD +   G +      SR   KPV +    +++
Sbjct: 151 GKGHSDVPADEMLSDEYYEQDGEDQSDLMRYRGFSKPVDLSSRLQSKPVPIKNNVSRR 208


>ref|XP_006470732.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like isoform
           X1 [Citrus sinensis] gi|568833055|ref|XP_006470733.1|
           PREDICTED: chromodomain-helicase-DNA-binding protein
           1-like isoform X2 [Citrus sinensis]
          Length = 1777

 Score = 90.1 bits (222), Expect = 3e-16
 Identities = 52/125 (41%), Positives = 72/125 (57%), Gaps = 18/125 (14%)
 Frame = +1

Query: 1   WGSKFWKDCQPMS----------DSEYDRNNIGNEESGRNSSEDSHE--------QRHRR 126
           WGS FWKDCQP            DS+Y+  N+  E S  NSS++  +        Q+   
Sbjct: 97  WGSTFWKDCQPRGPNTAGSDSGQDSKYEYKNL--EGSYYNSSDEREDRLESQDEGQKPAT 154

Query: 127 LSQRGNVDIPADEMLSDDYYEQDGEEQSDSVHGSGQNHTNISGSRFPLKPVSVNKKTAKK 306
            + +G  D+PADEMLSD+YYEQDGEEQSDS+   G +++    SR   K V+VN   +++
Sbjct: 155 KAAKGYSDVPADEMLSDEYYEQDGEEQSDSMQYRGFSNSVGLNSRSQSKTVAVNSSVSRR 214

Query: 307 SRVIK 321
           SR +K
Sbjct: 215 SRALK 219


>ref|XP_006446246.1| hypothetical protein CICLE_v100140192mg, partial [Citrus
           clementina] gi|557548857|gb|ESR59486.1| hypothetical
           protein CICLE_v100140192mg, partial [Citrus clementina]
          Length = 572

 Score = 90.1 bits (222), Expect = 3e-16
 Identities = 52/125 (41%), Positives = 72/125 (57%), Gaps = 18/125 (14%)
 Frame = +1

Query: 1   WGSKFWKDCQPMS----------DSEYDRNNIGNEESGRNSSEDSHE--------QRHRR 126
           WGS FWKDCQP            DS+Y+  N+  E S  NSS++  +        Q+   
Sbjct: 97  WGSTFWKDCQPRGPNTAGSDSGQDSKYEYKNM--EGSYYNSSDEREDRLESQDEGQKPAN 154

Query: 127 LSQRGNVDIPADEMLSDDYYEQDGEEQSDSVHGSGQNHTNISGSRFPLKPVSVNKKTAKK 306
            + +G  D+PADEMLSD+YYEQDGEEQSDS+   G +++    SR   K V+VN   +++
Sbjct: 155 KAAKGYSDVPADEMLSDEYYEQDGEEQSDSMQYRGFSNSVGLNSRSQSKTVAVNSSVSRR 214

Query: 307 SRVIK 321
           SR +K
Sbjct: 215 SRALK 219


>ref|XP_003617298.1| Chromodomain-helicase-DNA-binding protein [Medicago truncatula]
           gi|355518633|gb|AET00257.1|
           Chromodomain-helicase-DNA-binding protein [Medicago
           truncatula]
          Length = 1739

 Score = 89.4 bits (220), Expect = 5e-16
 Identities = 52/123 (42%), Positives = 65/123 (52%), Gaps = 18/123 (14%)
 Frame = +1

Query: 1   WGSKFWKDCQPM-----------SDSEYDRNNIGNEE-------SGRNSSEDSHEQRHRR 126
           WGS FWKDCQP            S S  D  N G  E       +GR  SED   Q+   
Sbjct: 97  WGSTFWKDCQPSCPQNGFESGKESKSGSDYKNAGGSEDNSVDGETGRLDSEDDDGQKEVG 156

Query: 127 LSQRGNVDIPADEMLSDDYYEQDGEEQSDSVHGSGQNHTNISGSRFPLKPVSVNKKTAKK 306
             +R + D+PA+EMLSD+YYEQDGE+QSDS+H +G   +    S    K  SV K   +K
Sbjct: 157 KGRRSHSDVPAEEMLSDEYYEQDGEDQSDSLHYNGIQKSTGRNSWPQQKSTSVKKPVRRK 216

Query: 307 SRV 315
           SR+
Sbjct: 217 SRI 219


>ref|XP_004252878.1| PREDICTED: chromodomain-helicase-DNA-binding protein 2-like
           [Solanum lycopersicum]
          Length = 1707

 Score = 87.0 bits (214), Expect = 2e-15
 Identities = 46/120 (38%), Positives = 64/120 (53%), Gaps = 13/120 (10%)
 Frame = +1

Query: 1   WGSKFWKDCQPM-------------SDSEYDRNNIGNEESGRNSSEDSHEQRHRRLSQRG 141
           WGS FWKDCQPM             S SEY      +E S     +   E   R+     
Sbjct: 77  WGSGFWKDCQPMGPSGRSGSGEESKSGSEYKNEEESDEVSDGREDQLESEDEGRQKEMGK 136

Query: 142 NVDIPADEMLSDDYYEQDGEEQSDSVHGSGQNHTNISGSRFPLKPVSVNKKTAKKSRVIK 321
           +  +PADEMLSD+YYEQDG++QSDS+H    N ++   S+   +PVS +K  ++K++  K
Sbjct: 137 SRSVPADEMLSDEYYEQDGDDQSDSLHYRAANPSSGYSSKLQSRPVSASKYASRKAKASK 196


>ref|XP_006349779.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like isoform
           X1 [Solanum tuberosum] gi|565366197|ref|XP_006349780.1|
           PREDICTED: chromodomain-helicase-DNA-binding protein
           1-like isoform X2 [Solanum tuberosum]
           gi|565366199|ref|XP_006349781.1| PREDICTED:
           chromodomain-helicase-DNA-binding protein 1-like isoform
           X3 [Solanum tuberosum]
          Length = 1707

 Score = 85.5 bits (210), Expect = 7e-15
 Identities = 46/120 (38%), Positives = 64/120 (53%), Gaps = 13/120 (10%)
 Frame = +1

Query: 1   WGSKFWKDCQPM-------------SDSEYDRNNIGNEESGRNSSEDSHEQRHRRLSQRG 141
           WGS FWKDCQPM             S SEY      +E S     +   E   R+     
Sbjct: 77  WGSGFWKDCQPMGPSGRSGSGEESKSGSEYKNEEESDEVSDGREDQLESEDEGRQKDMGK 136

Query: 142 NVDIPADEMLSDDYYEQDGEEQSDSVHGSGQNHTNISGSRFPLKPVSVNKKTAKKSRVIK 321
           +  +PADEMLSD+YYEQDG++QSDS+H    N ++   S+   +PVS +K  ++K++  K
Sbjct: 137 SRSVPADEMLSDEYYEQDGDDQSDSLHYRAANPSSGYSSKPQSRPVSASKYASRKAKASK 196


>ref|XP_002885872.1| hypothetical protein ARALYDRAFT_480306 [Arabidopsis lyrata subsp.
           lyrata] gi|297331712|gb|EFH62131.1| hypothetical protein
           ARALYDRAFT_480306 [Arabidopsis lyrata subsp. lyrata]
          Length = 1721

 Score = 84.7 bits (208), Expect = 1e-14
 Identities = 49/125 (39%), Positives = 63/125 (50%), Gaps = 19/125 (15%)
 Frame = +1

Query: 1   WGSKFWKDCQPMSDSE----------------YDRNNIGNEESGRNSSE---DSHEQRHR 123
           WGS FWKDCQPM   E                +  +N+ N+ S +  SE   D+ E    
Sbjct: 97  WGSTFWKDCQPMGQREGSDPAKDSQSGYKEAYHSEDNLSNDRSEKLDSENENDNDEDNEM 156

Query: 124 RLSQRGNVDIPADEMLSDDYYEQDGEEQSDSVHGSGQNHTNISGSRFPLKPVSVNKKTAK 303
              Q G  D+PADEMLSD+YYEQD + QSD VH  G  ++N + SR   K  S     ++
Sbjct: 157 NKHQSGQADVPADEMLSDEYYEQDEDNQSDHVHYKG--YSNPTNSRSLPKAGSATHSNSR 214

Query: 304 KSRVI 318
            SR I
Sbjct: 215 ASRAI 219


>gb|ESW13477.1| hypothetical protein PHAVU_008G199800g [Phaseolus vulgaris]
          Length = 1759

 Score = 82.0 bits (201), Expect = 7e-14
 Identities = 50/123 (40%), Positives = 64/123 (52%), Gaps = 19/123 (15%)
 Frame = +1

Query: 1   WGSKFWKDCQPM-------------SDSEYDRNNIGNEES------GRNSSEDSHEQRHR 123
           WGS FWKDC  M             S S+Y RN  G+E++      GR  S+D   Q+  
Sbjct: 97  WGSSFWKDCGQMGPQNGSESGQESKSGSDY-RNADGSEDNSLDGRAGRLDSDDDDGQKEE 155

Query: 124 RLSQRGNVDIPADEMLSDDYYEQDGEEQSDSVHGSGQNHTNISGSRFPLKPVSVNKKTAK 303
               RG  D+PA+EMLSD+YYEQDGEEQSDS+H  G    + S S       + N+   +
Sbjct: 156 GKGPRGLSDVPAEEMLSDEYYEQDGEEQSDSIHYGGIKKPSESNSWPQRMSTTANRTLHR 215

Query: 304 KSR 312
            SR
Sbjct: 216 NSR 218


>ref|XP_003600162.1| DNA-directed RNA polymerase [Medicago truncatula]
           gi|355489210|gb|AES70413.1| DNA-directed RNA polymerase
           [Medicago truncatula]
          Length = 2083

 Score = 81.6 bits (200), Expect = 1e-13
 Identities = 49/124 (39%), Positives = 65/124 (52%), Gaps = 18/124 (14%)
 Frame = +1

Query: 1   WGSKFWKDCQPMS---------DSEYDRNNIGNEESGRNSSE---------DSHEQRHRR 126
           WGS + KDCQPMS         DS+   +    +E   NSSE         D   Q+   
Sbjct: 78  WGSSYLKDCQPMSPQNGSESGDDSKSGSDYRNEDEFEDNSSEGRGEKLGSEDEDGQKDSG 137

Query: 127 LSQRGNVDIPADEMLSDDYYEQDGEEQSDSVHGSGQNHTNISGSRFPLKPVSVNKKTAKK 306
             QRG+ D+PA+EMLSDD Y QDGEEQ +SVH  G   +  S S       +VN++  +K
Sbjct: 138 KGQRGDSDVPAEEMLSDDSYGQDGEEQGESVHSRGFRPSTGSNSCLQPTSTNVNRRVHRK 197

Query: 307 SRVI 318
           SR++
Sbjct: 198 SRIL 201


>ref|XP_006296589.1| hypothetical protein CARUB_v10012803mg [Capsella rubella]
           gi|482565298|gb|EOA29487.1| hypothetical protein
           CARUB_v10012803mg [Capsella rubella]
          Length = 1725

 Score = 81.3 bits (199), Expect = 1e-13
 Identities = 48/123 (39%), Positives = 65/123 (52%), Gaps = 17/123 (13%)
 Frame = +1

Query: 1   WGSKFWKDCQPMSDSE----------------YDRNNIGNEESGRNSSEDSHEQRHR-RL 129
           WGS FWKDCQPM   E                +  +N+ NE S +  SE+ +E+ +    
Sbjct: 97  WGSTFWKDCQPMGQREGSDPAKDSQSGYKEAYHSEDNLSNERSEKLDSENENEEDNEMNK 156

Query: 130 SQRGNVDIPADEMLSDDYYEQDGEEQSDSVHGSGQNHTNISGSRFPLKPVSVNKKTAKKS 309
            Q G  D+PADEMLSD+YYEQD + QSD V+  G  ++N + SR   K  S     ++ S
Sbjct: 157 HQSGQADVPADEMLSDEYYEQDEDNQSDHVNYKG--YSNPTNSRSLPKTGSSIHSNSRAS 214

Query: 310 RVI 318
           R I
Sbjct: 215 RAI 217