BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00036536
         (650 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002325119.1| DNA-directed RNA polymerase family protein [...   266   3e-69
emb|CBI36559.3| unnamed protein product [Vitis vinifera]              262   7e-68
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   262   7e-68
ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Popu...   261   1e-67
ref|XP_003563329.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   260   3e-67
emb|CBL69150.1| RNA polymerase [Nuphar advena]                        260   3e-67
ref|XP_004965707.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   259   4e-67
emb|CAA06488.1| DNA directed RNA polymerase [Zea mays] gi|413954...   259   4e-67
ref|NP_001104932.1| RNA polymerase2 [Zea mays] gi|4559306|gb|AAD...   259   4e-67
ref|XP_006656314.1| PREDICTED: DNA-directed RNA polymerase 3B, c...   258   1e-66
ref|XP_006857036.1| hypothetical protein AMTR_s00065p00022170 [A...   257   2e-66
gb|EMJ04424.1| hypothetical protein PRUPE_ppa000868mg [Prunus pe...   257   2e-66
ref|NP_001058231.2| Os06g0652000 [Oryza sativa Japonica Group] g...   257   2e-66
dbj|BAC76605.1| RpoT2 [Oryza sativa Japonica Group] gi|37360971|...   257   2e-66
gb|EEE66135.1| hypothetical protein OsJ_22187 [Oryza sativa Japo...   257   2e-66
gb|EAZ01908.1| hypothetical protein OsI_23934 [Oryza sativa Indi...   257   2e-66
ref|XP_002437374.1| hypothetical protein SORBIDRAFT_10g025820 [S...   256   3e-66
ref|XP_006404912.1| hypothetical protein EUTSA_v10000030mg [Eutr...   256   4e-66
ref|XP_004297187.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   256   5e-66
gb|EOY01555.1| DNA-directed RNA polymerase isoform 3 [Theobroma ...   255   7e-66

>ref|XP_002325119.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
           gi|222866553|gb|EEF03684.1| DNA-directed RNA polymerase
           family protein [Populus trichocarpa]
          Length = 882

 Score =  266 bits (681), Expect = 3e-69
 Identities = 129/214 (60%), Positives = 153/214 (71%), Gaps = 1/214 (0%)
 Frame = +3

Query: 12  EDTIPVVQPAFRHMLKHIPNEDG-KSVSRYGVIECDPLVRKGLNNTARHXXXXXXXXXXX 188
           ED  P V+PAFRH+ K +    G K V +YGVIECDPL+  GL+ TA+H           
Sbjct: 257 EDIPPDVRPAFRHIFKTLTKNPGQKIVKKYGVIECDPLILTGLDGTAKHMLIPYFPMLVP 316

Query: 189 XKSWKGYDLGGHLFLPSYAMRTHGAKEQQDAIRSVPRKQLKKVFEALDTLGRTKWRINKR 368
            K WKGYD GGHLFLPSY MRTHG+++QQ A+RSVP KQ++KVFEALDTLG TKWR+N+R
Sbjct: 317 PKKWKGYDKGGHLFLPSYVMRTHGSRQQQVAVRSVPGKQMQKVFEALDTLGNTKWRVNRR 376

Query: 369 ILDVVEILWSQGGGIAGLVNRKDIQLSDRPDSEDLNEIXXXXXXXXXXXXXXSEMHSLRC 548
           +LDVVE +W+ GG IAGLV+R+DI + ++P S+DL EI               E HS RC
Sbjct: 377 LLDVVERIWTSGGNIAGLVDREDIPIPEKPSSDDLTEIQKWKWSVRKAKKINQERHSQRC 436

Query: 549 DIELKLSVACKLSSEEGFYYPHNLDFRGRAYPMH 650
           D ELKLSVA KL  EEGFYYPHNLDFRGRAYPMH
Sbjct: 437 DTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMH 470


>emb|CBI36559.3| unnamed protein product [Vitis vinifera]
          Length = 808

 Score =  262 bits (669), Expect = 7e-68
 Identities = 125/213 (58%), Positives = 153/213 (71%), Gaps = 1/213 (0%)
 Frame = +3

Query: 15  DTIPVVQPAFRHMLKHIPNEDG-KSVSRYGVIECDPLVRKGLNNTARHXXXXXXXXXXXX 191
           D  P V+PAFRH  K +  E G K   +YGVIECDPLV  GL+ TA+H            
Sbjct: 184 DCPPDVRPAFRHTFKTVTKESGQKDWRKYGVIECDPLVLIGLDRTAKHMVIPYVPMLIPP 243

Query: 192 KSWKGYDLGGHLFLPSYAMRTHGAKEQQDAIRSVPRKQLKKVFEALDTLGRTKWRINKRI 371
           K WKGYD GG+LFLPSY MRTHG+++QQDA++SVPR+QL+KVFEALDTLG TKWRIN+R+
Sbjct: 244 KKWKGYDKGGYLFLPSYVMRTHGSRKQQDAVKSVPRRQLQKVFEALDTLGNTKWRINRRV 303

Query: 372 LDVVEILWSQGGGIAGLVNRKDIQLSDRPDSEDLNEIXXXXXXXXXXXXXXSEMHSLRCD 551
           L VVE +W++GG + GLV+R+++ L ++P +EDL EI               E HSLRCD
Sbjct: 304 LSVVESIWARGGNLGGLVDRENVPLPEKPSTEDLTEIQNWKWNARKAKKINQERHSLRCD 363

Query: 552 IELKLSVACKLSSEEGFYYPHNLDFRGRAYPMH 650
            E+KLSVA K+  EEGFYYPHNLDFRGRAYPMH
Sbjct: 364 TEIKLSVARKMKDEEGFYYPHNLDFRGRAYPMH 396


>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
           vinifera]
          Length = 979

 Score =  262 bits (669), Expect = 7e-68
 Identities = 125/213 (58%), Positives = 153/213 (71%), Gaps = 1/213 (0%)
 Frame = +3

Query: 15  DTIPVVQPAFRHMLKHIPNEDG-KSVSRYGVIECDPLVRKGLNNTARHXXXXXXXXXXXX 191
           D  P V+PAFRH  K +  E G K   +YGVIECDPLV  GL+ TA+H            
Sbjct: 355 DCPPDVRPAFRHTFKTVTKESGQKDWRKYGVIECDPLVLIGLDRTAKHMVIPYVPMLIPP 414

Query: 192 KSWKGYDLGGHLFLPSYAMRTHGAKEQQDAIRSVPRKQLKKVFEALDTLGRTKWRINKRI 371
           K WKGYD GG+LFLPSY MRTHG+++QQDA++SVPR+QL+KVFEALDTLG TKWRIN+R+
Sbjct: 415 KKWKGYDKGGYLFLPSYVMRTHGSRKQQDAVKSVPRRQLQKVFEALDTLGNTKWRINRRV 474

Query: 372 LDVVEILWSQGGGIAGLVNRKDIQLSDRPDSEDLNEIXXXXXXXXXXXXXXSEMHSLRCD 551
           L VVE +W++GG + GLV+R+++ L ++P +EDL EI               E HSLRCD
Sbjct: 475 LSVVESIWARGGNLGGLVDRENVPLPEKPSTEDLTEIQNWKWNARKAKKINQERHSLRCD 534

Query: 552 IELKLSVACKLSSEEGFYYPHNLDFRGRAYPMH 650
            E+KLSVA K+  EEGFYYPHNLDFRGRAYPMH
Sbjct: 535 TEIKLSVARKMKDEEGFYYPHNLDFRGRAYPMH 567


>ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Populus trichocarpa]
            gi|222854390|gb|EEE91937.1| hypothetical protein
            POPTR_0006s19490g [Populus trichocarpa]
          Length = 982

 Score =  261 bits (668), Expect = 1e-67
 Identities = 127/217 (58%), Positives = 152/217 (70%), Gaps = 1/217 (0%)
 Frame = +3

Query: 3    DRLEDTIPVVQPAFRHMLKHIPNEDG-KSVSRYGVIECDPLVRKGLNNTARHXXXXXXXX 179
            D+ E   P V+PAFRH+ K +    G K+V +YGVIECDPL+  GL+ TA+H        
Sbjct: 354  DQSEGIPPDVRPAFRHIFKSVTKNPGQKTVKKYGVIECDPLILTGLDGTAKHMLIPYFPM 413

Query: 180  XXXXKSWKGYDLGGHLFLPSYAMRTHGAKEQQDAIRSVPRKQLKKVFEALDTLGRTKWRI 359
                K W+GYD GGHLFLPSY MRTHG+++QQDA+RSVP KQ++KVFEALDTLG TKWR+
Sbjct: 414  LVPPKKWRGYDKGGHLFLPSYIMRTHGSRQQQDAVRSVPGKQMQKVFEALDTLGNTKWRV 473

Query: 360  NKRILDVVEILWSQGGGIAGLVNRKDIQLSDRPDSEDLNEIXXXXXXXXXXXXXXSEMHS 539
            N ++LDVVE +W+ GG  AGLVNR DI + ++  S+DL EI               E HS
Sbjct: 474  NGKVLDVVERIWASGGNNAGLVNRGDIPIPEKLSSDDLTEIQKWKWSVRKAKKINQERHS 533

Query: 540  LRCDIELKLSVACKLSSEEGFYYPHNLDFRGRAYPMH 650
             RCD ELKLSVA KL  EEGFYYPHNLDFRGRAYPMH
Sbjct: 534  QRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMH 570


>ref|XP_003563329.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Brachypodium distachyon]
          Length = 943

 Score =  260 bits (664), Expect = 3e-67
 Identities = 124/216 (57%), Positives = 156/216 (72%)
 Frame = +3

Query: 3   DRLEDTIPVVQPAFRHMLKHIPNEDGKSVSRYGVIECDPLVRKGLNNTARHXXXXXXXXX 182
           D++ D+ P  +PAF+H+L+    E+G+   ++ VIECDPLV +G  +TARH         
Sbjct: 316 DQIPDSSPDFRPAFKHVLRKPIVENGRLKKKHFVIECDPLVHEGFESTARHVEIPYLPML 375

Query: 183 XXXKSWKGYDLGGHLFLPSYAMRTHGAKEQQDAIRSVPRKQLKKVFEALDTLGRTKWRIN 362
                WKGYD GGHLFLPSY MRTHG K+Q++AI+SVPRKQL+KVFEALD LG TKWR+N
Sbjct: 376 VPPTKWKGYDKGGHLFLPSYVMRTHGVKDQKEAIKSVPRKQLRKVFEALDILGGTKWRVN 435

Query: 363 KRILDVVEILWSQGGGIAGLVNRKDIQLSDRPDSEDLNEIXXXXXXXXXXXXXXSEMHSL 542
           +R+ DVVE +WS+GGGIAGLV++ DI L +RP+SED +EI               E+H+ 
Sbjct: 436 RRVHDVVETIWSRGGGIAGLVDKGDIPLPERPESEDPDEIQKWKWSLKKAKKINRELHAE 495

Query: 543 RCDIELKLSVACKLSSEEGFYYPHNLDFRGRAYPMH 650
           RCD ELKLSVA K+  E+GFYYPHNLDFRGRAYPMH
Sbjct: 496 RCDTELKLSVARKMREEDGFYYPHNLDFRGRAYPMH 531


>emb|CBL69150.1| RNA polymerase [Nuphar advena]
          Length = 985

 Score =  260 bits (664), Expect = 3e-67
 Identities = 125/216 (57%), Positives = 152/216 (70%)
 Frame = +3

Query: 3    DRLEDTIPVVQPAFRHMLKHIPNEDGKSVSRYGVIECDPLVRKGLNNTARHXXXXXXXXX 182
            ++L +  P ++PAFRH  K    E   SV RYG+IECDPLVRKGL+ TARH         
Sbjct: 358  NQLAZGPPEIRPAFRHTFKTXKKEXDNSVKRYGIIECDPLVRKGLDATARHLVIPYMPML 417

Query: 183  XXXKSWKGYDLGGHLFLPSYAMRTHGAKEQQDAIRSVPRKQLKKVFEALDTLGRTKWRIN 362
               K W GYD GGHLFLPSY MRTHGAK+Q+DA++SVP+ QLK+VFEALDTLG TKWR+N
Sbjct: 418  IPPKKWTGYDKGGHLFLPSYVMRTHGAKQQRDALKSVPKXQLKEVFEALDTLGSTKWRVN 477

Query: 363  KRILDVVEILWSQGGGIAGLVNRKDIQLSDRPDSEDLNEIXXXXXXXXXXXXXXSEMHSL 542
            KR+LDV++ LW+ G  IAGLV+  DI L ++P +ED  ++               E H+ 
Sbjct: 478  KRVLDVIDSLWASGRPIAGLVDHSDIALPEKPCTEDEAQMRRWRWSVKKVKKENCERHAQ 537

Query: 543  RCDIELKLSVACKLSSEEGFYYPHNLDFRGRAYPMH 650
            RCDIELKLSVA K+  E+GFYYPHNLDFRGRAYPMH
Sbjct: 538  RCDIELKLSVARKMRKEDGFYYPHNLDFRGRAYPMH 573


>ref|XP_004965707.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Setaria italica]
          Length = 966

 Score =  259 bits (663), Expect = 4e-67
 Identities = 124/216 (57%), Positives = 156/216 (72%)
 Frame = +3

Query: 3   DRLEDTIPVVQPAFRHMLKHIPNEDGKSVSRYGVIECDPLVRKGLNNTARHXXXXXXXXX 182
           D+  D+ P ++PAFRH+L+    E+G+   ++ VIECD LV +G  +TARH         
Sbjct: 339 DQTPDSSPDIRPAFRHVLRQPIIENGRLKKKHWVIECDHLVHEGFESTARHVDIPYLPML 398

Query: 183 XXXKSWKGYDLGGHLFLPSYAMRTHGAKEQQDAIRSVPRKQLKKVFEALDTLGRTKWRIN 362
              K WKGYD GGHLFLPSY MRTHG K+Q+DAI+SVPRKQL+KVFEALD LG TKWR+N
Sbjct: 399 VPPKKWKGYDKGGHLFLPSYIMRTHGVKDQKDAIKSVPRKQLQKVFEALDILGSTKWRVN 458

Query: 363 KRILDVVEILWSQGGGIAGLVNRKDIQLSDRPDSEDLNEIXXXXXXXXXXXXXXSEMHSL 542
           +R+ DVVE +WS+GGGIAGLV++ +I L +RP+SED +E+               E+H+ 
Sbjct: 459 RRVHDVVETIWSRGGGIAGLVDKANIPLPERPESEDPDEMQKWKWSLKKAKKTNRELHAE 518

Query: 543 RCDIELKLSVACKLSSEEGFYYPHNLDFRGRAYPMH 650
           RCD ELKLSVA K+  E+GFYYPHNLDFRGRAYPMH
Sbjct: 519 RCDTELKLSVARKMREEDGFYYPHNLDFRGRAYPMH 554


>emb|CAA06488.1| DNA directed RNA polymerase [Zea mays] gi|413954906|gb|AFW87555.1|
           DNA-directed RNA polymerase isoform 1 [Zea mays]
           gi|413954907|gb|AFW87556.1| DNA-directed RNA polymerase
           isoform 2 [Zea mays]
          Length = 952

 Score =  259 bits (663), Expect = 4e-67
 Identities = 124/216 (57%), Positives = 155/216 (71%)
 Frame = +3

Query: 3   DRLEDTIPVVQPAFRHMLKHIPNEDGKSVSRYGVIECDPLVRKGLNNTARHXXXXXXXXX 182
           D+  D+ P ++PAF+H+L+    E+G+   ++ VIECD LV +G  +TARH         
Sbjct: 325 DQTPDSSPDIRPAFKHVLRQPIIENGRLKKKHWVIECDHLVHEGFESTARHVDIPYLPML 384

Query: 183 XXXKSWKGYDLGGHLFLPSYAMRTHGAKEQQDAIRSVPRKQLKKVFEALDTLGRTKWRIN 362
              K WKGYD GGHLFLPSY MRTHG K+Q+DAI SVPRKQL+KVFEALD LG TKWR+N
Sbjct: 385 VPPKKWKGYDKGGHLFLPSYIMRTHGVKDQKDAINSVPRKQLRKVFEALDILGSTKWRVN 444

Query: 363 KRILDVVEILWSQGGGIAGLVNRKDIQLSDRPDSEDLNEIXXXXXXXXXXXXXXSEMHSL 542
           +R+ DVVE +WSQGGGIAGLV++ +I L +RP+SED +E+               E+H+ 
Sbjct: 445 RRVHDVVETIWSQGGGIAGLVDKANIPLPERPESEDPDEMQKWKWSLKKAKKTNRELHAE 504

Query: 543 RCDIELKLSVACKLSSEEGFYYPHNLDFRGRAYPMH 650
           RCD ELKLSVA K+  E+GFYYPHNLDFRGRAYPMH
Sbjct: 505 RCDTELKLSVARKMREEDGFYYPHNLDFRGRAYPMH 540


>ref|NP_001104932.1| RNA polymerase2 [Zea mays] gi|4559306|gb|AAD22977.1|AF127022_1
           T7-like RNA polymerase [Zea mays]
          Length = 952

 Score =  259 bits (663), Expect = 4e-67
 Identities = 124/216 (57%), Positives = 155/216 (71%)
 Frame = +3

Query: 3   DRLEDTIPVVQPAFRHMLKHIPNEDGKSVSRYGVIECDPLVRKGLNNTARHXXXXXXXXX 182
           D+  D+ P ++PAF+H+L+    E+G+   ++ VIECD LV +G  +TARH         
Sbjct: 325 DQTPDSSPDIRPAFKHVLRQPIIENGRLKKKHWVIECDHLVHEGFESTARHVDIPYLPML 384

Query: 183 XXXKSWKGYDLGGHLFLPSYAMRTHGAKEQQDAIRSVPRKQLKKVFEALDTLGRTKWRIN 362
              K WKGYD GGHLFLPSY MRTHG K+Q+DAI SVPRKQL+KVFEALD LG TKWR+N
Sbjct: 385 VPPKKWKGYDKGGHLFLPSYIMRTHGVKDQKDAINSVPRKQLRKVFEALDILGSTKWRVN 444

Query: 363 KRILDVVEILWSQGGGIAGLVNRKDIQLSDRPDSEDLNEIXXXXXXXXXXXXXXSEMHSL 542
           +R+ DVVE +WSQGGGIAGLV++ +I L +RP+SED +E+               E+H+ 
Sbjct: 445 RRVHDVVETIWSQGGGIAGLVDKANIPLPERPESEDPDEMQKWKWSLKKAKKTNRELHAE 504

Query: 543 RCDIELKLSVACKLSSEEGFYYPHNLDFRGRAYPMH 650
           RCD ELKLSVA K+  E+GFYYPHNLDFRGRAYPMH
Sbjct: 505 RCDTELKLSVARKMREEDGFYYPHNLDFRGRAYPMH 540


>ref|XP_006656314.1| PREDICTED: DNA-directed RNA polymerase 3B, chloroplastic-like
           [Oryza brachyantha]
          Length = 810

 Score =  258 bits (659), Expect = 1e-66
 Identities = 122/216 (56%), Positives = 157/216 (72%)
 Frame = +3

Query: 3   DRLEDTIPVVQPAFRHMLKHIPNEDGKSVSRYGVIECDPLVRKGLNNTARHXXXXXXXXX 182
           D+  ++ P ++PAF+H+L+    E+G+   ++ VIECDPLV +G  +TARH         
Sbjct: 183 DQKPESSPDIRPAFKHVLRQPIVENGRLKKKHWVIECDPLVHEGFESTARHVEIPYLPML 242

Query: 183 XXXKSWKGYDLGGHLFLPSYAMRTHGAKEQQDAIRSVPRKQLKKVFEALDTLGRTKWRIN 362
              K WKGYD GG+LFLPSY MRTHG K+Q++AI+SVPRKQL+KVFEALDTLG TKWR+N
Sbjct: 243 VPPKKWKGYDSGGYLFLPSYIMRTHGVKDQKEAIKSVPRKQLRKVFEALDTLGSTKWRVN 302

Query: 363 KRILDVVEILWSQGGGIAGLVNRKDIQLSDRPDSEDLNEIXXXXXXXXXXXXXXSEMHSL 542
           +R+ D VE +WS+GGGIAGLV++ +I L +RP+SED +EI               E+H+ 
Sbjct: 303 RRVHDAVEAIWSRGGGIAGLVDKGNIPLPERPESEDPDEIQKWKWGLKKAKKTNRELHAE 362

Query: 543 RCDIELKLSVACKLSSEEGFYYPHNLDFRGRAYPMH 650
           RCD ELKLSVA K+  E+GFYYPHNLDFRGRAYPMH
Sbjct: 363 RCDTELKLSVARKMREEDGFYYPHNLDFRGRAYPMH 398


>ref|XP_006857036.1| hypothetical protein AMTR_s00065p00022170 [Amborella trichopoda]
            gi|548861119|gb|ERN18503.1| hypothetical protein
            AMTR_s00065p00022170 [Amborella trichopoda]
          Length = 987

 Score =  257 bits (657), Expect = 2e-66
 Identities = 124/216 (57%), Positives = 153/216 (70%)
 Frame = +3

Query: 3    DRLEDTIPVVQPAFRHMLKHIPNEDGKSVSRYGVIECDPLVRKGLNNTARHXXXXXXXXX 182
            D+  +  P ++PAFRH  +    +  K   RYGVIECDPLV KGL+ TARH         
Sbjct: 360  DQQAEGPPEIRPAFRHTFRTFTKDRQKFCRRYGVIECDPLVHKGLDKTARHMVTAYTPML 419

Query: 183  XXXKSWKGYDLGGHLFLPSYAMRTHGAKEQQDAIRSVPRKQLKKVFEALDTLGRTKWRIN 362
               K W+GYD GG+L LPS  MR HGAK+Q++A+++VP+KQL+ VFEALDTLG TKWR+N
Sbjct: 420  IRPKPWRGYDKGGYLVLPSQIMRIHGAKQQREAVKNVPQKQLQNVFEALDTLGSTKWRVN 479

Query: 363  KRILDVVEILWSQGGGIAGLVNRKDIQLSDRPDSEDLNEIXXXXXXXXXXXXXXSEMHSL 542
            KRILDVV  +W++GGGIAGLV+R+D+ L ++PD+ED  EI              SE HS 
Sbjct: 480  KRILDVVNRVWARGGGIAGLVDREDVLLPEKPDTEDEMEIRKWRWSVKKAKKVNSERHSQ 539

Query: 543  RCDIELKLSVACKLSSEEGFYYPHNLDFRGRAYPMH 650
            RCD+ELKLSVA K+  EEGFYYPHNLDFRGRAYPMH
Sbjct: 540  RCDLELKLSVARKMREEEGFYYPHNLDFRGRAYPMH 575


>gb|EMJ04424.1| hypothetical protein PRUPE_ppa000868mg [Prunus persica]
          Length = 976

 Score =  257 bits (657), Expect = 2e-66
 Identities = 125/216 (57%), Positives = 150/216 (69%), Gaps = 1/216 (0%)
 Frame = +3

Query: 6   RLEDTIPVVQPAFRHMLKHIPNEDG-KSVSRYGVIECDPLVRKGLNNTARHXXXXXXXXX 182
           +L D+ P V+PAFRH  K +    G K V  YGVIECDPLV  GL+ TA+H         
Sbjct: 349 QLADSPPDVRPAFRHRFKAVAKSPGQKIVKNYGVIECDPLVLTGLDKTAKHMLIPYVPML 408

Query: 183 XXXKSWKGYDLGGHLFLPSYAMRTHGAKEQQDAIRSVPRKQLKKVFEALDTLGRTKWRIN 362
              K WKGYD GGHLFLPSY MRTHG+++Q DA+R++ R Q++KVFEALD LG TKWR+N
Sbjct: 409 VPPKRWKGYDKGGHLFLPSYVMRTHGSRKQVDAMRNISRNQMQKVFEALDMLGSTKWRVN 468

Query: 363 KRILDVVEILWSQGGGIAGLVNRKDIQLSDRPDSEDLNEIXXXXXXXXXXXXXXSEMHSL 542
           K++L VVE +W++GG IAGLVNR+D+ + D+  SEDL EI               E HS 
Sbjct: 469 KKVLSVVESIWARGGNIAGLVNREDVPVPDKSPSEDLKEIQEWKWSVRKAKKINQERHSQ 528

Query: 543 RCDIELKLSVACKLSSEEGFYYPHNLDFRGRAYPMH 650
           RCD ELKLSVA K+  EEGFYYPHNLDFRGRAYPMH
Sbjct: 529 RCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMH 564


>ref|NP_001058231.2| Os06g0652000 [Oryza sativa Japonica Group]
           gi|51534999|dbj|BAD38123.1| putative T7
           bacteriophage-type single subunit RNA polymerase [Oryza
           sativa Japonica Group] gi|255677283|dbj|BAF20145.2|
           Os06g0652000 [Oryza sativa Japonica Group]
          Length = 806

 Score =  257 bits (656), Expect = 2e-66
 Identities = 120/216 (55%), Positives = 158/216 (73%)
 Frame = +3

Query: 3   DRLEDTIPVVQPAFRHMLKHIPNEDGKSVSRYGVIECDPLVRKGLNNTARHXXXXXXXXX 182
           D+  ++ P ++PAF+H+L+    E+G+   ++ VIECDPLV +G  +TARH         
Sbjct: 179 DQTPESSPDIRPAFKHVLRQPIVENGRLKKKHWVIECDPLVHEGFESTARHVEIPYLPML 238

Query: 183 XXXKSWKGYDLGGHLFLPSYAMRTHGAKEQQDAIRSVPRKQLKKVFEALDTLGRTKWRIN 362
              K WKGYD GG+LFLPSY MRTHG K+Q++AI+SVPRKQL+KVFEALDTLG TKWR+N
Sbjct: 239 VTPKKWKGYDTGGYLFLPSYIMRTHGVKDQKEAIKSVPRKQLRKVFEALDTLGSTKWRVN 298

Query: 363 KRILDVVEILWSQGGGIAGLVNRKDIQLSDRPDSEDLNEIXXXXXXXXXXXXXXSEMHSL 542
           +R+ + VE +WS+GGGIAGLV++++I L +RP++ED +EI               E+H+ 
Sbjct: 299 RRVHNAVETIWSRGGGIAGLVDKENIPLPERPETEDPDEIQKWKWSLKKAKKANRELHAE 358

Query: 543 RCDIELKLSVACKLSSEEGFYYPHNLDFRGRAYPMH 650
           RCD ELKLSVA K+  E+GFYYPHNLDFRGRAYPMH
Sbjct: 359 RCDTELKLSVARKMREEDGFYYPHNLDFRGRAYPMH 394


>dbj|BAC76605.1| RpoT2 [Oryza sativa Japonica Group] gi|37360971|dbj|BAC98394.1| T7
           bacteriophage-type single subunit RNA polymerase [Oryza
           sativa Japonica Group]
          Length = 953

 Score =  257 bits (656), Expect = 2e-66
 Identities = 120/216 (55%), Positives = 158/216 (73%)
 Frame = +3

Query: 3   DRLEDTIPVVQPAFRHMLKHIPNEDGKSVSRYGVIECDPLVRKGLNNTARHXXXXXXXXX 182
           D+  ++ P ++PAF+H+L+    E+G+   ++ VIECDPLV +G  +TARH         
Sbjct: 326 DQTPESSPDIRPAFKHVLRQPIVENGRLKKKHWVIECDPLVHEGFESTARHVEIPYLPML 385

Query: 183 XXXKSWKGYDLGGHLFLPSYAMRTHGAKEQQDAIRSVPRKQLKKVFEALDTLGRTKWRIN 362
              K WKGYD GG+LFLPSY MRTHG K+Q++AI+SVPRKQL+KVFEALDTLG TKWR+N
Sbjct: 386 VTPKKWKGYDTGGYLFLPSYIMRTHGVKDQKEAIKSVPRKQLRKVFEALDTLGSTKWRVN 445

Query: 363 KRILDVVEILWSQGGGIAGLVNRKDIQLSDRPDSEDLNEIXXXXXXXXXXXXXXSEMHSL 542
           +R+ + VE +WS+GGGIAGLV++++I L +RP++ED +EI               E+H+ 
Sbjct: 446 RRVHNAVETIWSRGGGIAGLVDKENIPLPERPETEDPDEIQKWKWSLKKAKKANRELHAE 505

Query: 543 RCDIELKLSVACKLSSEEGFYYPHNLDFRGRAYPMH 650
           RCD ELKLSVA K+  E+GFYYPHNLDFRGRAYPMH
Sbjct: 506 RCDTELKLSVARKMREEDGFYYPHNLDFRGRAYPMH 541


>gb|EEE66135.1| hypothetical protein OsJ_22187 [Oryza sativa Japonica Group]
          Length = 946

 Score =  257 bits (656), Expect = 2e-66
 Identities = 120/216 (55%), Positives = 158/216 (73%)
 Frame = +3

Query: 3   DRLEDTIPVVQPAFRHMLKHIPNEDGKSVSRYGVIECDPLVRKGLNNTARHXXXXXXXXX 182
           D+  ++ P ++PAF+H+L+    E+G+   ++ VIECDPLV +G  +TARH         
Sbjct: 319 DQTPESSPDIRPAFKHVLRQPIVENGRLKKKHWVIECDPLVHEGFESTARHVEIPYLPML 378

Query: 183 XXXKSWKGYDLGGHLFLPSYAMRTHGAKEQQDAIRSVPRKQLKKVFEALDTLGRTKWRIN 362
              K WKGYD GG+LFLPSY MRTHG K+Q++AI+SVPRKQL+KVFEALDTLG TKWR+N
Sbjct: 379 VTPKKWKGYDTGGYLFLPSYIMRTHGVKDQKEAIKSVPRKQLRKVFEALDTLGSTKWRVN 438

Query: 363 KRILDVVEILWSQGGGIAGLVNRKDIQLSDRPDSEDLNEIXXXXXXXXXXXXXXSEMHSL 542
           +R+ + VE +WS+GGGIAGLV++++I L +RP++ED +EI               E+H+ 
Sbjct: 439 RRVHNAVETIWSRGGGIAGLVDKENIPLPERPETEDPDEIQKWKWSLKKAKKANRELHAE 498

Query: 543 RCDIELKLSVACKLSSEEGFYYPHNLDFRGRAYPMH 650
           RCD ELKLSVA K+  E+GFYYPHNLDFRGRAYPMH
Sbjct: 499 RCDTELKLSVARKMREEDGFYYPHNLDFRGRAYPMH 534


>gb|EAZ01908.1| hypothetical protein OsI_23934 [Oryza sativa Indica Group]
          Length = 950

 Score =  257 bits (656), Expect = 2e-66
 Identities = 120/216 (55%), Positives = 158/216 (73%)
 Frame = +3

Query: 3   DRLEDTIPVVQPAFRHMLKHIPNEDGKSVSRYGVIECDPLVRKGLNNTARHXXXXXXXXX 182
           D+  ++ P ++PAF+H+L+    E+G+   ++ VIECDPLV +G  +TARH         
Sbjct: 323 DQTPESSPDIRPAFKHVLRQPIVENGRLKKKHWVIECDPLVHEGFESTARHVEIPYLPML 382

Query: 183 XXXKSWKGYDLGGHLFLPSYAMRTHGAKEQQDAIRSVPRKQLKKVFEALDTLGRTKWRIN 362
              K WKGYD GG+LFLPSY MRTHG K+Q++AI+SVPRKQL+KVFEALDTLG TKWR+N
Sbjct: 383 VTPKKWKGYDTGGYLFLPSYIMRTHGVKDQKEAIKSVPRKQLRKVFEALDTLGSTKWRVN 442

Query: 363 KRILDVVEILWSQGGGIAGLVNRKDIQLSDRPDSEDLNEIXXXXXXXXXXXXXXSEMHSL 542
           +R+ + VE +WS+GGGIAGLV++++I L +RP++ED +EI               E+H+ 
Sbjct: 443 RRVHNAVETIWSRGGGIAGLVDKENIPLPERPETEDPDEIQKWKWSLKKAKKANRELHAE 502

Query: 543 RCDIELKLSVACKLSSEEGFYYPHNLDFRGRAYPMH 650
           RCD ELKLSVA K+  E+GFYYPHNLDFRGRAYPMH
Sbjct: 503 RCDTELKLSVARKMREEDGFYYPHNLDFRGRAYPMH 538


>ref|XP_002437374.1| hypothetical protein SORBIDRAFT_10g025820 [Sorghum bicolor]
           gi|241915597|gb|EER88741.1| hypothetical protein
           SORBIDRAFT_10g025820 [Sorghum bicolor]
          Length = 960

 Score =  256 bits (655), Expect = 3e-66
 Identities = 122/216 (56%), Positives = 155/216 (71%)
 Frame = +3

Query: 3   DRLEDTIPVVQPAFRHMLKHIPNEDGKSVSRYGVIECDPLVRKGLNNTARHXXXXXXXXX 182
           D++ D+ P ++PAF+H+L+    E+G+   ++ VIECD LV  G  +TARH         
Sbjct: 332 DQIPDSSPDIRPAFKHVLRQPIIENGRLKKKHWVIECDHLVHDGFESTARHVDIPYLPML 391

Query: 183 XXXKSWKGYDLGGHLFLPSYAMRTHGAKEQQDAIRSVPRKQLKKVFEALDTLGRTKWRIN 362
              K WKGY+ GGHLFLPSY MRTHG K+Q+DAI SVPRKQL+KVFEALD LG TKWR+N
Sbjct: 392 VPPKKWKGYNKGGHLFLPSYIMRTHGVKDQKDAINSVPRKQLRKVFEALDILGSTKWRVN 451

Query: 363 KRILDVVEILWSQGGGIAGLVNRKDIQLSDRPDSEDLNEIXXXXXXXXXXXXXXSEMHSL 542
           +R+ DVVE +WS+GGGIAGLV++ +I L +RP+SED +E+               E+H+ 
Sbjct: 452 RRVHDVVETIWSRGGGIAGLVDKANIPLPERPESEDPDEMQKWKWSLKKAKKTNRELHAE 511

Query: 543 RCDIELKLSVACKLSSEEGFYYPHNLDFRGRAYPMH 650
           RCD ELKLSVA K+  E+GFYYPHNLDFRGRAYPMH
Sbjct: 512 RCDTELKLSVARKMREEDGFYYPHNLDFRGRAYPMH 547


>ref|XP_006404912.1| hypothetical protein EUTSA_v10000030mg [Eutrema salsugineum]
            gi|557106040|gb|ESQ46365.1| hypothetical protein
            EUTSA_v10000030mg [Eutrema salsugineum]
          Length = 993

 Score =  256 bits (654), Expect = 4e-66
 Identities = 125/213 (58%), Positives = 148/213 (69%), Gaps = 1/213 (0%)
 Frame = +3

Query: 15   DTIPVVQPAFRHMLKHIPNEDG-KSVSRYGVIECDPLVRKGLNNTARHXXXXXXXXXXXX 191
            DTIP  +PAFRH  K +    G K V RYGVIECD L+  GL+ +A+H            
Sbjct: 369  DTIPEFRPAFRHKFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPMLVPP 428

Query: 192  KSWKGYDLGGHLFLPSYAMRTHGAKEQQDAIRSVPRKQLKKVFEALDTLGRTKWRINKRI 371
            K WKGYD GG+LFLPSY MRTHG+K+QQDA+R +  K   +VFEALDTLG TKWR+N++I
Sbjct: 429  KRWKGYDKGGYLFLPSYIMRTHGSKKQQDALRDISSKTAHRVFEALDTLGNTKWRVNRKI 488

Query: 372  LDVVEILWSQGGGIAGLVNRKDIQLSDRPDSEDLNEIXXXXXXXXXXXXXXSEMHSLRCD 551
            LDVVE LW+ GG IAGLVNR+D+ + ++P SED  EI               E HSLRCD
Sbjct: 489  LDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEEIQSWKWSVRKANKINRERHSLRCD 548

Query: 552  IELKLSVACKLSSEEGFYYPHNLDFRGRAYPMH 650
            +ELKLSVA K+  EEGFYYPHNLDFRGRAYPMH
Sbjct: 549  VELKLSVARKMKDEEGFYYPHNLDFRGRAYPMH 581


>ref|XP_004297187.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like
            [Fragaria vesca subsp. vesca]
          Length = 997

 Score =  256 bits (653), Expect = 5e-66
 Identities = 126/216 (58%), Positives = 149/216 (68%)
 Frame = +3

Query: 3    DRLEDTIPVVQPAFRHMLKHIPNEDGKSVSRYGVIECDPLVRKGLNNTARHXXXXXXXXX 182
            D+L D+ P  +PAF H LK I  E  K+  RYGVIECDPLVRKG+  TARH         
Sbjct: 370  DQLGDSPPDFRPAFMHTLKTITKEAQKTNRRYGVIECDPLVRKGMEKTARHMVIPYMPML 429

Query: 183  XXXKSWKGYDLGGHLFLPSYAMRTHGAKEQQDAIRSVPRKQLKKVFEALDTLGRTKWRIN 362
                +W GYD G HLFLPSY MRTHGAK+Q+  ++S PRKQL+ VFEALDTLG TKWRIN
Sbjct: 430  VPPLNWTGYDKGAHLFLPSYVMRTHGAKQQRQVLKSTPRKQLEPVFEALDTLGSTKWRIN 489

Query: 363  KRILDVVEILWSQGGGIAGLVNRKDIQLSDRPDSEDLNEIXXXXXXXXXXXXXXSEMHSL 542
            KR+L VV+ +W+ GGG+A LV+R+D  L + PD+ED  E+              SE HS 
Sbjct: 490  KRVLGVVDRIWASGGGLADLVSREDDTLPEDPDTEDEAEMRKWKWKVKAVKKKNSERHSQ 549

Query: 543  RCDIELKLSVACKLSSEEGFYYPHNLDFRGRAYPMH 650
            RCD ELKL+VA K+  EEGFYYPHNLDFRGRAYPMH
Sbjct: 550  RCDTELKLAVARKMKDEEGFYYPHNLDFRGRAYPMH 585


>gb|EOY01555.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
          Length = 932

 Score =  255 bits (652), Expect = 7e-66
 Identities = 122/216 (56%), Positives = 151/216 (69%)
 Frame = +3

Query: 3    DRLEDTIPVVQPAFRHMLKHIPNEDGKSVSRYGVIECDPLVRKGLNNTARHXXXXXXXXX 182
            D+L D  P ++PAF H LK I  +  K   RYGVIECD LVRKGL  TARH         
Sbjct: 369  DQLGDCPPDIRPAFVHSLKTITKDGNKGSRRYGVIECDLLVRKGLEKTARHMVIPYMPML 428

Query: 183  XXXKSWKGYDLGGHLFLPSYAMRTHGAKEQQDAIRSVPRKQLKKVFEALDTLGRTKWRIN 362
               ++W GYD G +LFLPSY MRTHGAK+Q++ ++  PRKQL+ +FEALDTLG TKWRIN
Sbjct: 429  VPPQNWTGYDRGAYLFLPSYVMRTHGAKQQRETVKRTPRKQLEPIFEALDTLGNTKWRIN 488

Query: 363  KRILDVVEILWSQGGGIAGLVNRKDIQLSDRPDSEDLNEIXXXXXXXXXXXXXXSEMHSL 542
            KR+L VV+ LW+ GG +A LV+R+D+ L ++PD+ED  EI              +E HSL
Sbjct: 489  KRVLGVVDRLWANGGRVASLVDREDVPLPEKPDTEDEAEIQKWKWKVKAANKQNNERHSL 548

Query: 543  RCDIELKLSVACKLSSEEGFYYPHNLDFRGRAYPMH 650
            RCD+ELKL+VA K+  E+GFYYPHNLDFRGRAYPMH
Sbjct: 549  RCDVELKLAVARKMRDEDGFYYPHNLDFRGRAYPMH 584