BLASTX nr result

ID: Zingiber23_contig00032475 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00032475
         (277 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006836321.1| hypothetical protein AMTR_s00092p00064890 [A...    57   2e-06
ref|XP_004295634.1| PREDICTED: pentatricopeptide repeat-containi...    55   1e-05

>ref|XP_006836321.1| hypothetical protein AMTR_s00092p00064890 [Amborella trichopoda]
           gi|548838839|gb|ERM99174.1| hypothetical protein
           AMTR_s00092p00064890 [Amborella trichopoda]
          Length = 285

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 30/59 (50%), Positives = 40/59 (67%)
 Frame = -1

Query: 181 VALLRTCNSLPRVKPIHALCIRRGVPLGHPGLAKHLLFAIVSLASDDDDPMPYASAVFA 5
           VALL+ CNSLP VK IHA  +R GV    P + KHL+F++VSL++    PM YA  +F+
Sbjct: 59  VALLQNCNSLPSVKQIHAFGLRNGVAPSDPLVGKHLIFSLVSLST----PMRYALNIFS 113


>ref|XP_004295634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Fragaria vesca subsp. vesca]
          Length = 611

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 29/61 (47%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
 Frame = -1

Query: 181 VALLRTC-NSLPRVKPIHALCIRRGVPLGHPGLAKHLLFAIVSLASDDDDPMPYASAVFA 5
           +ALL++C +S  ++K IHA  IR GVPL +P + KHL+F  VSL+S    PM YA  +F+
Sbjct: 41  IALLQSCASSNSKLKQIHAFSIRHGVPLSNPDMGKHLIFTSVSLSS----PMSYAHHIFS 96

Query: 4   R 2
           +
Sbjct: 97  Q 97


Top