BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00031341
         (2393 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280704.1| PREDICTED: chloroplastic group IIA intron sp...   588   e-165
ref|XP_004973285.1| PREDICTED: chloroplastic group IIA intron sp...   572   e-160
ref|XP_004973284.1| PREDICTED: chloroplastic group IIA intron sp...   570   e-159
ref|XP_003573775.1| PREDICTED: chloroplastic group IIA intron sp...   569   e-159
ref|XP_006842364.1| hypothetical protein AMTR_s00079p00185530 [A...   566   e-158
ref|XP_002444215.1| hypothetical protein SORBIDRAFT_07g015120 [S...   556   e-155
tpg|DAA49209.1| TPA: chloroplast RNA splicing1 [Zea mays]             554   e-155
ref|NP_001105008.1| chloroplastic group IIA intron splicing faci...   553   e-154
dbj|BAJ90249.1| predicted protein [Hordeum vulgare subsp. vulgare]    547   e-153
dbj|BAJ86158.1| predicted protein [Hordeum vulgare subsp. vulgare]    546   e-152
ref|XP_006482225.1| PREDICTED: chloroplastic group IIA intron sp...   541   e-151
ref|XP_002516757.1| conserved hypothetical protein [Ricinus comm...   539   e-150
gb|EOY04144.1| maize chloroplast splicing factor CRS1, putative ...   538   e-150
gb|EOY04143.1| maize chloroplast splicing factor CRS1, putative ...   538   e-150
ref|NP_001061635.1| Os08g0360100 [Oryza sativa Japonica Group] g...   538   e-150
gb|EEE68561.1| hypothetical protein OsJ_27045 [Oryza sativa Japo...   538   e-150
ref|XP_006660084.1| PREDICTED: chloroplastic group IIA intron sp...   536   e-149
gb|EOY04146.1| maize chloroplast splicing factor CRS1, putative ...   536   e-149
gb|EOY04145.1| maize chloroplast splicing factor CRS1, putative ...   536   e-149
ref|XP_006603055.1| PREDICTED: chloroplastic group IIA intron sp...   530   e-147

>ref|XP_002280704.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Vitis vinifera]
          Length = 1184

 Score =  588 bits (1517), Expect = e-165
 Identities = 341/739 (46%), Positives = 446/739 (60%), Gaps = 25/739 (3%)
 Frame = +2

Query: 5    NRPPSSVPPWILADGADSLKMPTAPWMSSPLVLPRDQVLDPSSPRRSARRKHKNDGRANR 184
            N P  S+    ++    ++KMPTAPWM  PL+L  ++VLD S  R           + +R
Sbjct: 55   NHPDHSISSQPVSGTDAAIKMPTAPWMKGPLLLQPNEVLDLSKARPKKVAGSAGAEKPDR 114

Query: 185  DLTEKVRGGRSRYAMLGIIRNIKSLRELHSLEADDEKPTSSGVSGGAQVVDLDIPLGTGD 364
             LTEKV GGR   AM  I+++I  L+E H+  +D+ +  +     G  +  +    G  +
Sbjct: 115  SLTEKVSGGRGAKAMKKIMQSIVKLQETHT--SDETQENTEEFEFGVSLEGIG---GDEN 169

Query: 365  SGGGRRIPWVSAEVDKLVFRREKKVKEITAAELVLAPDLLFRLRGEXXXXXXXXXXXXXG 544
            S  G ++PW+  E  K+VFRR KK K +TAAEL L P LL RLRGE             G
Sbjct: 170  SRIGGKMPWLKTE--KVVFRRTKKEKVVTAAELTLDPMLLERLRGEAVKMRKWVKVKKAG 227

Query: 545  VTQVVVEEIQRGWRNDELVMVRIVEPLRRNMDRAREIVETKTGGLVVWIKRDFLVIYRGE 724
            VT+ VV++I   W++DEL MV+   PL RNMDRAREI+E KT GLV+W K+D LV+YRG 
Sbjct: 228  VTESVVDQIHMVWKSDELAMVKFDMPLCRNMDRAREILEIKTRGLVIWSKKDTLVVYRGS 287

Query: 725  KY------------GMILHTPSCYNAVDQVNLGIFDSNRAIFSVN------------SDG 832
             Y            G++    +  + ++Q N   F+ +  I  +              DG
Sbjct: 288  NYQSTSKHFQKMRPGLVAGADASNSKLNQSN---FEDDLTISEIKFHESTTGEKMGRKDG 344

Query: 833  IMEDMENNIYLTNKNSETQHPVEGSLYEREANRLLDGLGPRFVDWWWRTPLPVDADLLPE 1012
              +     I++  +      PV GSLYEREA+RLLDGLGPRF+DWW   PLPVDADLLPE
Sbjct: 345  EEDSSPTGIFM--EEMVDSQPVNGSLYEREADRLLDGLGPRFIDWWRPKPLPVDADLLPE 402

Query: 1013 VVXXXXXXXXXXXXGIRVKLTDDELTYLRKLARSLPTHFALGRNTKLQGLASSIIKLWKK 1192
            V+              R KLTDDELTYLRKLA +LPTHF LGRN KLQGLA++I+KLW+K
Sbjct: 403  VLPGFRPPFRLSPPQTRSKLTDDELTYLRKLAYALPTHFVLGRNRKLQGLAAAILKLWEK 462

Query: 1193 SCXXXXXXXXXXQNTNNEQMSLELKRLTGGVLILRNKFFIILYRGKDFLPDGVFNLIEER 1372
            S            NT NEQM+ ELK LTGGVL+LRNKFFIILYRGKDFLP  V NLI ER
Sbjct: 463  SLIVKIAIKWGIPNTKNEQMANELKCLTGGVLLLRNKFFIILYRGKDFLPCRVANLIVER 522

Query: 1373 EAELDKELLVEEEARVSSTNLTHTMDAISLSSNSAGTRMEFQNIQTNHVRLSIKNHRCQV 1552
            E E     + EE+AR+ +   +   D    ++++ GT  EFQNI+T    L   N   +V
Sbjct: 523  EMEFKGCQIREEDARLKAIETSFVTDKPLANTSTTGTLSEFQNIETEFRGLKDGNTEIEV 582

Query: 1553 QIXXXXXXXXXXXXXXXXXXFILNQKIEXXXXXXXXXXXXWCPSDQIADQEILTEEERQA 1732
            ++                  FIL +KIE            W P+D  AD+E++TEEER+ 
Sbjct: 583  ELEAEKERLEKELKKQERNLFILKRKIERSAKVLAKLNSAWRPADHDADKEMITEEEREC 642

Query: 1733 FRKIGLAMDEVILLGRRGIYNGVIGSIHQHWKHREVVKVITKQKAKYHVNYSARLLEVEC 1912
            FRKIG  MD  +LLGRRG+++GVI  +HQHWKHRE+VKVIT Q++   V Y+A+LLE E 
Sbjct: 643  FRKIGQKMDSSLLLGRRGVFDGVIEGLHQHWKHREIVKVITMQRSFSQVLYTAKLLESES 702

Query: 1913 GGILVAVEKLRTSHAIIIYRGKNYARPLQL-PDNILTKREALQRSIEIQRRGSLKHFSLQ 2089
            GG+LV+++KL+  HAIIIYRGKNY RP++L P N+LTKREAL RS+E+QR GSLK F+ Q
Sbjct: 703  GGVLVSIDKLKEGHAIIIYRGKNYRRPIKLVPKNLLTKREALNRSLEMQRIGSLKFFAYQ 762

Query: 2090 REKAIRKLKQRLRDLERKS 2146
            R++AI  LK +L DL++ S
Sbjct: 763  RQQAISDLKLKLADLQKGS 781


>ref|XP_004973285.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X2 [Setaria italica]
          Length = 736

 Score =  572 bits (1474), Expect = e-160
 Identities = 335/730 (45%), Positives = 441/730 (60%), Gaps = 20/730 (2%)
 Frame = +2

Query: 14   PSSVPPWILADGADSLKMPTAPWMSSPLVLPRDQVLDPSSPR----RSARRKHKNDGRAN 181
            P   PPW+      +    T P  ++P     D+   P+ PR    + A  ++     A 
Sbjct: 15   PPPPPPWLHGPSTQTQNPSTGP--AAPPA--PDEAAPPNKPRHHSAQPAPARNTGSKTAA 70

Query: 182  RDLTEKVRGGRSRYAMLGIIRNIKSLRELHSLEADDEKPTSSGVSGGAQVVDLDIPLGTG 361
            + LT  V GGR+R A+LGIIR ++SL EL   +     P  +  +  A  V   +P+   
Sbjct: 71   KPLTAGVPGGRTRRAVLGIIRRVRSL-ELS--DPPGPVPAPARNNDAAAAVPFHLPIEPR 127

Query: 362  DS-------GGGRRIPWVSAEVD--KLVFRREKKVKEITAAELVLAPDLLFRLRGEXXXX 514
            +        G  R +PW +A  +  K+  RREKK +E T AE  L    L RL+      
Sbjct: 128  EQAREAVEKGKARAVPWAAARDEGLKVALRREKKAREPTRAEAELEAGELDRLQRLARGM 187

Query: 515  XXXXXXXXXGVTQVVVEEIQRGW-RNDELVMVRIVEPLRRNMDRAREIVETKTGGLVVWI 691
                     GVT  VVE+++R W R +EL  VRIVEPLRRNMDRAREI+E KTGGLV+W 
Sbjct: 188  GRWARAKKAGVTDEVVEDLRREWARGEELAAVRIVEPLRRNMDRAREILEIKTGGLVIWT 247

Query: 692  KRDFLVIYRGEKYGMIL-HTPSCYNAVDQVNLGIFDSNRAIFSVNSDGIMEDMENNIYLT 868
            K D   +YRG  Y   + H+     +V  V+   ++ +RA     ++G +        LT
Sbjct: 248  KGDIHFVYRGSNYQQNMKHSQYSVASVQNVSPVKYNVHRAQIKYGNEGEV--------LT 299

Query: 869  NKNSE----TQHPVEGSLYEREANRLLDGLGPRFVDWWWRTPLPVDADLLPEVVXXXXXX 1036
            + NS+     + P++G+LYERE NRLLD LGPRFVDWWW TPLPVDADLLPE V      
Sbjct: 300  DGNSKGDDKDEEPIKGTLYEREVNRLLDSLGPRFVDWWWNTPLPVDADLLPEFVPGFKTP 359

Query: 1037 XXXXXXGIRVKLTDDELTYLRKLARSLPTHFALGRNTKLQGLASSIIKLWKKSCXXXXXX 1216
                  G+R  L D+ELTYLRKLAR LPTHFALGRN++LQGLA++I+KLW+KS       
Sbjct: 360  FRQCPPGVRPTLADEELTYLRKLARPLPTHFALGRNSRLQGLAAAILKLWEKSLIAKIAV 419

Query: 1217 XXXXQNTNNEQMSLELKRLTGGVLILRNKFFIILYRGKDFLPDGVFNLIEEREAELDKEL 1396
                QNTNNEQM+  LK LTGG +ILRNK FIILYRGKDFLP GV   + +REA++  E 
Sbjct: 420  KVGIQNTNNEQMAWNLKHLTGGTVILRNKDFIILYRGKDFLPGGVAQTVIQREAQVHDEQ 479

Query: 1397 LVEEEARVSSTNLTHTMDAISLSSNSAGTRMEFQNIQTNHVRLSIKNHRCQVQIXXXXXX 1576
            + EEEAR+ + +    +  +S   +S GT  E+Q+ Q +HV  + +N    +++      
Sbjct: 480  VKEEEARLKAVDSLQMVGGLSSEESSVGTFREYQDFQADHVHENTENSNI-IELEAEKHR 538

Query: 1577 XXXXXXXXXXXXFILNQKIEXXXXXXXXXXXXWCPSDQIADQEILTEEERQAFRKIGLAM 1756
                         ILN+KIE            W PS+Q AD+E+LTEEE+  FR+IG  M
Sbjct: 539  LEKELKDQEWKLSILNKKIEGSNQALAKLHSSWSPSEQSADRELLTEEEKAMFRRIGRKM 598

Query: 1757 DEVILLGRRGIYNGVIGSIHQHWKHREVVKVITKQKAKYHVNYSARLLEVECGGILVAVE 1936
            D ++LLGRRGI++GVI  IHQHWKH+EVVKVITKQ     + Y+A LLEVE GGIL+AVE
Sbjct: 599  DGLVLLGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQARQIMYTANLLEVETGGILIAVE 658

Query: 1937 KLRTSHAIIIYRGKNYARP-LQLPDNILTKREALQRSIEIQRRGSLKHFSLQREKAIRKL 2113
            KL TSHAII+YRGKNY RP      N+LTKREALQRSIE+QRRGS+K+F+ +R+K+I +L
Sbjct: 659  KLTTSHAIILYRGKNYRRPEKSSSSNLLTKREALQRSIEVQRRGSMKYFARERQKSILEL 718

Query: 2114 KQRLRDLERK 2143
            K++LR + R+
Sbjct: 719  KRKLRYVARQ 728


>ref|XP_004973284.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X1 [Setaria italica]
          Length = 748

 Score =  570 bits (1468), Expect = e-159
 Identities = 334/734 (45%), Positives = 443/734 (60%), Gaps = 24/734 (3%)
 Frame = +2

Query: 14   PSSVPPWILADGADSLKMPTAPWMSSPLVLPRDQVLDPSSPR----RSARRKHKNDGRAN 181
            P   PPW+      +    T P  ++P     D+   P+ PR    + A  ++     A 
Sbjct: 15   PPPPPPWLHGPSTQTQNPSTGP--AAPPA--PDEAAPPNKPRHHSAQPAPARNTGSKTAA 70

Query: 182  RDLTEKVRGGRSRYAMLGIIRNIKSLRELHSLEADDEKPTSSGVSGGAQVVDLDIPLGTG 361
            + LT  V GGR+R A+LGIIR ++SL EL   +     P  +  +  A  V   +P+   
Sbjct: 71   KPLTAGVPGGRTRRAVLGIIRRVRSL-ELS--DPPGPVPAPARNNDAAAAVPFHLPIEPR 127

Query: 362  DS-------GGGRRIPWVSAEVD--KLVFRREKKVKEITAAELVLAPDLLFRLRGEXXXX 514
            +        G  R +PW +A  +  K+  RREKK +E T AE  L    L RL+      
Sbjct: 128  EQAREAVEKGKARAVPWAAARDEGLKVALRREKKAREPTRAEAELEAGELDRLQRLARGM 187

Query: 515  XXXXXXXXXGVTQVVVEEIQRGW-RNDELVMVRIVEPLRRNMDRAREIVETKTGGLVVWI 691
                     GVT  VVE+++R W R +EL  VRIVEPLRRNMDRAREI+E KTGGLV+W 
Sbjct: 188  GRWARAKKAGVTDEVVEDLRREWARGEELAAVRIVEPLRRNMDRAREILEIKTGGLVIWT 247

Query: 692  KRDFLVIYRGEKYGMIL-HTPSCYNAVDQVNLGIFDSNRAIFSVNSDG-IMEDMEN---N 856
            K D   +YRG  Y   + H+     +V  V+   ++ +RA     ++G ++ D  +   +
Sbjct: 248  KGDIHFVYRGSNYQQNMKHSQYSVASVQNVSPVKYNVHRAQIKYGNEGEVLTDGNSKGDD 307

Query: 857  IYLTNKNS----ETQHPVEGSLYEREANRLLDGLGPRFVDWWWRTPLPVDADLLPEVVXX 1024
            +   N  S    + + P++G+LYERE NRLLD LGPRFVDWWW TPLPVDADLLPE V  
Sbjct: 308  VIQENDQSVCGQKDEEPIKGTLYEREVNRLLDSLGPRFVDWWWNTPLPVDADLLPEFVPG 367

Query: 1025 XXXXXXXXXXGIRVKLTDDELTYLRKLARSLPTHFALGRNTKLQGLASSIIKLWKKSCXX 1204
                      G+R  L D+ELTYLRKLAR LPTHFALGRN++LQGLA++I+KLW+KS   
Sbjct: 368  FKTPFRQCPPGVRPTLADEELTYLRKLARPLPTHFALGRNSRLQGLAAAILKLWEKSLIA 427

Query: 1205 XXXXXXXXQNTNNEQMSLELKRLTGGVLILRNKFFIILYRGKDFLPDGVFNLIEEREAEL 1384
                    QNTNNEQM+  LK LTGG +ILRNK FIILYRGKDFLP GV   + +REA++
Sbjct: 428  KIAVKVGIQNTNNEQMAWNLKHLTGGTVILRNKDFIILYRGKDFLPGGVAQTVIQREAQV 487

Query: 1385 DKELLVEEEARVSSTNLTHTMDAISLSSNSAGTRMEFQNIQTNHVRLSIKNHRCQVQIXX 1564
              E + EEEAR+ + +    +  +S   +S GT  E+Q+ Q +HV  + +N    +++  
Sbjct: 488  HDEQVKEEEARLKAVDSLQMVGGLSSEESSVGTFREYQDFQADHVHENTENSNI-IELEA 546

Query: 1565 XXXXXXXXXXXXXXXXFILNQKIEXXXXXXXXXXXXWCPSDQIADQEILTEEERQAFRKI 1744
                             ILN+KIE            W PS+Q AD+E+LTEEE+  FR+I
Sbjct: 547  EKHRLEKELKDQEWKLSILNKKIEGSNQALAKLHSSWSPSEQSADRELLTEEEKAMFRRI 606

Query: 1745 GLAMDEVILLGRRGIYNGVIGSIHQHWKHREVVKVITKQKAKYHVNYSARLLEVECGGIL 1924
            G  MD ++LLGRRGI++GVI  IHQHWKH+EVVKVITKQ     + Y+A LLEVE GGIL
Sbjct: 607  GRKMDGLVLLGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQARQIMYTANLLEVETGGIL 666

Query: 1925 VAVEKLRTSHAIIIYRGKNYARP-LQLPDNILTKREALQRSIEIQRRGSLKHFSLQREKA 2101
            +AVEKL TSHAII+YRGKNY RP      N+LTKREALQRSIE+QRRGS+K+F+ +R+K+
Sbjct: 667  IAVEKLTTSHAIILYRGKNYRRPEKSSSSNLLTKREALQRSIEVQRRGSMKYFARERQKS 726

Query: 2102 IRKLKQRLRDLERK 2143
            I +LK++LR + R+
Sbjct: 727  ILELKRKLRYVARQ 740


>ref|XP_003573775.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Brachypodium distachyon]
          Length = 730

 Score =  569 bits (1467), Expect = e-159
 Identities = 328/721 (45%), Positives = 432/721 (59%), Gaps = 24/721 (3%)
 Frame = +2

Query: 68   PTAPWMSSPLV----LPRDQVLDPSSPRRSARRKHKNDGRANRDLTEKVRGGRSRYAMLG 235
            P  PW+  P       P   +  P  P    + +  N    N  LT  V GGR+R A+LG
Sbjct: 17   PPPPWLHGPKTPTSATPPLPIEAPPKPHNDPKPQRSNSSTTN-PLTTGVPGGRTRRAVLG 75

Query: 236  IIRNIKSLRELHSLEADDEKPTSSGVSGGAQVVDL------DIPLGTGDSGG---GRRIP 388
            IIR ++SL EL +      +P++SG       +D       +   G  + G     R +P
Sbjct: 76   IIRRVRSL-ELSNPPNPRPRPSTSGNIPFHLPIDRPQEGQEEEEAGKDEKGKLTKSRAVP 134

Query: 389  WVSAEVD--KLVFRREKKVKEITAAELVLAPDLLFRLRGEXXXXXXXXXXXXXGVTQVVV 562
            W +A  +  K+V RREKKV+E T AE  L P LL RLR               GVT  VV
Sbjct: 135  WSAARDEHLKVVLRREKKVREPTRAERELGPALLERLRRAARGMDRWARAKKAGVTDEVV 194

Query: 563  EEIQRGWRN-DELVMVRIVEPLRRNMDRAREIVETKTGGLVVWIKRDFLVIYRGEKYGMI 739
            E+++  W +  EL  VRIVEPLRR MDRAREI+E KTGGLVVW K D   +YRG  Y  +
Sbjct: 195  EDVRSEWSSGQELAGVRIVEPLRRCMDRAREILEIKTGGLVVWTKGDIHFVYRGSDY--V 252

Query: 740  LHTPSCYNAVDQVNL-----GIFDSNRAIFSVNSD---GIMEDMENNIYLTNKNSETQHP 895
             +    +N V  +         + SN  +   ++    G   + +++I +       + P
Sbjct: 253  HNMKYSHNFVADIQKVRTPQEKYKSNVELLGKHNGKAKGAFREKDSSIDIQTY----EEP 308

Query: 896  VEGSLYEREANRLLDGLGPRFVDWWWRTPLPVDADLLPEVVXXXXXXXXXXXXGIRVKLT 1075
            V+G+LYERE NRLLD LGPRF+DWWW TPLPVDADLLPEVV            G+R  L 
Sbjct: 309  VKGTLYEREVNRLLDSLGPRFIDWWWNTPLPVDADLLPEVVLGFKTPFRQCPPGVRPTLA 368

Query: 1076 DDELTYLRKLARSLPTHFALGRNTKLQGLASSIIKLWKKSCXXXXXXXXXXQNTNNEQMS 1255
            D+ELTYLRKLAR LP HFALGRNTKLQGLA++I+KLW+KS           +NTNNEQM+
Sbjct: 369  DEELTYLRKLARPLPAHFALGRNTKLQGLAAAILKLWEKSLVAKIAVKVGIENTNNEQMA 428

Query: 1256 LELKRLTGGVLILRNKFFIILYRGKDFLPDGVFNLIEEREAELDKELLVEEEARVSSTNL 1435
              LK LTGG +ILRNK FIILYRGKDFLP GV   + + EA++D + + EEEAR+S T  
Sbjct: 429  WNLKHLTGGTIILRNKDFIILYRGKDFLPAGVKQSVIQHEAQVDAQQVKEEEARLSGTES 488

Query: 1436 THTMDAISLSSNSAGTRMEFQNIQTNHVRLSIKNHRCQVQIXXXXXXXXXXXXXXXXXXF 1615
                  +    +SAGT  E+Q+ Q N    +  N++  +++                  F
Sbjct: 489  LQMFAGLPSVESSAGTFREYQDFQVNQAHETTINNKAMIELEAEKHRLEKELKDQERRLF 548

Query: 1616 ILNQKIEXXXXXXXXXXXXWCPSDQIADQEILTEEERQAFRKIGLAMDEVILLGRRGIYN 1795
            IL +KIE            W PS+Q AD+E+LTEEER  FRKIGL MDE +LLGRRG+++
Sbjct: 549  ILTKKIERSNQALAKLHSSWNPSEQSADKELLTEEERMIFRKIGLKMDEHVLLGRRGVFD 608

Query: 1796 GVIGSIHQHWKHREVVKVITKQKAKYHVNYSARLLEVECGGILVAVEKLRTSHAIIIYRG 1975
            GVI  IHQHWKH+E+VKVITKQ   Y + Y++ LLEVE GG+L+A +KL  SHAII+YRG
Sbjct: 609  GVIEEIHQHWKHKEIVKVITKQNQSYQITYTSMLLEVETGGVLIATQKLPHSHAIILYRG 668

Query: 1976 KNYARPLQLPDNILTKREALQRSIEIQRRGSLKHFSLQREKAIRKLKQRLRDLERKSSEM 2155
            KNY RP + P N+LTKREAL+RS+E+QRRGS+K++  +R+K+I +L+ RL ++ R+  ++
Sbjct: 669  KNYRRPEKSPSNLLTKREALRRSVEVQRRGSMKYYVWERQKSIEELQWRLANVAREIRKL 728

Query: 2156 T 2158
            T
Sbjct: 729  T 729


>ref|XP_006842364.1| hypothetical protein AMTR_s00079p00185530 [Amborella trichopoda]
            gi|548844430|gb|ERN04039.1| hypothetical protein
            AMTR_s00079p00185530 [Amborella trichopoda]
          Length = 886

 Score =  567 bits (1460), Expect = e-158
 Identities = 335/733 (45%), Positives = 432/733 (58%), Gaps = 35/733 (4%)
 Frame = +2

Query: 53   DSLKMPTAPWMSSPLVLPRDQVLDPSSPRRSARRKHKNDGRANRDLTEKVRGGRSRYAML 232
            + +KMPTAPWM  PL+LP D VLD S  R+ +  +  +D +A   LT  VRGGRS++AM 
Sbjct: 179  NEVKMPTAPWMRGPLLLPADDVLDLSKSRKKSSNEMNSDDKA---LTGGVRGGRSKHAMR 235

Query: 233  GIIRNIKSLRELH-------------SLEADDEKPTSSGVSGGAQV---VDLDIPLG--- 355
             I+ NI  L+E+H             S E D     +S  S GA        ++PL    
Sbjct: 236  LIMENITKLKEIHEENEQKKETHIVLSDEVDIRSKINSSFSEGATKSIEAGFNLPLKEVS 295

Query: 356  -TGDSGGGRRIPWVSAEVDKLVFRREKKVKEITAAELVLAPDLLFRLRGEXXXXXXXXXX 532
             + D     ++PW  AE  K VFRR KK K  T AEL L   LL RLR            
Sbjct: 296  VSEDQAMETKLPWTMAE--KNVFRRVKKEKTPTKAELSLPKPLLTRLRDRGRTLTKWVKV 353

Query: 533  XXXGVTQVVVEEIQRGWRNDELVMVRIVEPLRRNMDRAREIVETKTGGLVVWIKRDFLVI 712
               GVTQ V+ EI   W+  EL M++   PL RNMDRA EIVETKTGGLVVW K+  LV+
Sbjct: 354  KKAGVTQEVMNEIYAVWKKRELAMLKFDVPLCRNMDRATEIVETKTGGLVVWRKKGTLVV 413

Query: 713  YRGEKYGMILHTPSCYNAVDQVNLGIFDSNRA--------------IFSVNSDGIMEDME 850
            YRG  Y    H+ S  +  +  +L +FD N+               I+   SDG+M++  
Sbjct: 414  YRGTNY----HSLSKTSETNPWSLELFDDNKISAPNGFLNFKDDTMIYQAGSDGLMKE-- 467

Query: 851  NNIYLTNKNSETQHPVEGSLYEREANRLLDGLGPRFVDWWWRTPLPVDADLLPEVVXXXX 1030
                              +L+EREANRLLD LGPRF+DWWW TPLPVDADLLPEV+    
Sbjct: 468  ------------------TLFEREANRLLDELGPRFIDWWWSTPLPVDADLLPEVIPNFR 509

Query: 1031 XXXXXXXXGIRVKLTDDELTYLRKLARSLPTHFALGRNTKLQGLASSIIKLWKKSCXXXX 1210
                     ++ KLTD+ELTYLRK A+ LPTHFALG+NTKLQGLA++I+KLW+KS     
Sbjct: 510  PPLRLCPPHMQSKLTDEELTYLRKFAKHLPTHFALGKNTKLQGLAAAILKLWEKSLIAKI 569

Query: 1211 XXXXXXQNTNNEQMSLELKRLTGGVLILRNKFFIILYRGKDFLPDGVFNLIEEREAELDK 1390
                   N N++QM+ ELK LTGGVL+L+NKFFI+LYRGKDFLP GV N I ERE  L  
Sbjct: 570  AIKWGIPNVNHQQMAYELKHLTGGVLLLQNKFFILLYRGKDFLPPGVANSIAERETTLKT 629

Query: 1391 ELLVEEEARVSSTNLTHTMDAISLSSNSAGTRMEFQNIQTNHVRLSIKNHRCQVQIXXXX 1570
              + EE AR  +     + D    +++  GT  +FQ IQ +    +       +++    
Sbjct: 630  LQIHEENARSIAATGFLSPDETQPTTSRTGTLSDFQEIQEHSHPFNESQTESNIKLEAAK 689

Query: 1571 XXXXXXXXXXXXXXFILNQKIEXXXXXXXXXXXXWCPSDQIADQEILTEEERQAFRKIGL 1750
                           IL  K+E            W P+   ADQE +T+EE Q FRK+GL
Sbjct: 690  EKLEIELRKQEHMLSILKLKVERSEKEMAKLNSAWQPAKGEADQETITKEEFQNFRKVGL 749

Query: 1751 AMDEVILLGRRGIYNGVIGSIHQHWKHREVVKVITKQKAKYHVNYSARLLEVECGGILVA 1930
             MDEV+LLGRRG+++GVIGSIHQHWKHREVVK+++ QK    V  +AR+LE E GGIL+A
Sbjct: 750  KMDEVLLLGRRGVFDGVIGSIHQHWKHREVVKLVSMQKTLEEVTRTARMLETESGGILIA 809

Query: 1931 VEKLRTSHAIIIYRGKNYARPLQ-LPDNILTKREALQRSIEIQRRGSLKHFSLQREKAIR 2107
            V KLR  HAII+YRGKNY RP + LPDN+L+K+EA  RSIEIQRRGSLK+F  Q+E++I 
Sbjct: 810  VVKLRKGHAIILYRGKNYRRPPKLLPDNLLSKKEAFDRSIEIQRRGSLKYFICQQEQSIW 869

Query: 2108 KLKQRLRDLERKS 2146
            KL+Q+L+ L++++
Sbjct: 870  KLQQQLKKLQKQA 882


>ref|XP_002444215.1| hypothetical protein SORBIDRAFT_07g015120 [Sorghum bicolor]
            gi|241940565|gb|EES13710.1| hypothetical protein
            SORBIDRAFT_07g015120 [Sorghum bicolor]
          Length = 728

 Score =  556 bits (1433), Expect = e-155
 Identities = 330/722 (45%), Positives = 432/722 (59%), Gaps = 16/722 (2%)
 Frame = +2

Query: 26   PPWILADGADSLKMPTAPWMSSPLVLPRDQVLDPSSPR----RSARRKHKNDGRANRDLT 193
            PPW+      S         S+P V P      P  PR    +SA  K KN     + LT
Sbjct: 19   PPWLHGSSTQSRD-------SAPPVPPPPADATPPKPRTHSPKSAPAK-KNTKTTAKPLT 70

Query: 194  EKVRGGRSRYAMLGIIRNIKSLRELHSLEADDEKPTSSGVSGGAQV-VDLDIPLGTG--- 361
              V GGR+  A+LGIIR ++SL    +  A     +++G +    + ++   P   G   
Sbjct: 71   AGVPGGRTHRAVLGIIRRVRSLELSDAPSASSVHDSNAGAAAAFHLPIEPSPPREPGQEV 130

Query: 362  -DSGGGRRIPWVSAEVD--KLVFRREKKVKEITAAELVLAPDLLFRLRGEXXXXXXXXXX 532
             +    R +PW +A  +  K+  RREKK ++ T AE  L  D L RLR            
Sbjct: 131  VEKAKPRAVPWAAARDEGLKVALRREKKPRKPTRAETELETDELDRLRRLARGMGRWARA 190

Query: 533  XXXGVTQVVVEEIQRGWRN-DELVMVRIVEPLRRNMDRAREIVETKTGGLVVWIKRDFLV 709
               GVT  VVEE++R W + +EL  VRIVEPLRR+MDRAREI+E KTGGLVVW K D   
Sbjct: 191  KKAGVTDEVVEEMRREWASGEELAAVRIVEPLRRSMDRAREILEIKTGGLVVWTKGDIHF 250

Query: 710  IYRGEKYGMILHTPSCYNAVDQVNLGIFDSNRAIFSVNSDGIMED--MENNIYLTNKNSE 883
            +Y+G KY    +    +  V  V+ G      ++   N  G  +D   EN+  +  +  E
Sbjct: 251  VYKGSKYQQ--NAKHSHTFVTNVHKG------SLVKQNVRGEADDAFQENDQSICGQKDE 302

Query: 884  TQHPVEGSLYEREANRLLDGLGPRFVDWWWRTPLPVDADLLPEVVXXXXXXXXXXXXGIR 1063
               PV+G+LYERE NRLLD LGPRFVDWWW TPLPVDADLLPE +            G+R
Sbjct: 303  --EPVKGTLYEREVNRLLDTLGPRFVDWWWDTPLPVDADLLPEFIPGFKTPFRQCPPGVR 360

Query: 1064 VKLTDDELTYLRKLARSLPTHFALGRNTKLQGLASSIIKLWKKSCXXXXXXXXXXQNTNN 1243
              L D+ELTYLRKLAR LPTHFALGRNT+LQGLA++I+KLW+KS           QNTNN
Sbjct: 361  PTLADEELTYLRKLARPLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKVGIQNTNN 420

Query: 1244 EQMSLELKRLTGGVLILRNKFFIILYRGKDFLPDGVFNLIEEREAELDKELLVEEEARVS 1423
            EQM+  LK LTGG +ILRNK F+ILYRGKDFLP GV   + +REA++D E + EEEAR+ 
Sbjct: 421  EQMAWNLKHLTGGTVILRNKDFVILYRGKDFLPGGVAQTVIQREAQVDDEQVKEEEARLK 480

Query: 1424 STNLTHTMDAISL-SSNSAGTRMEFQNIQTNHVRLSIKNHRCQVQIXXXXXXXXXXXXXX 1600
            + +    +  +S    +S GT  E+++   + V  + +     +++              
Sbjct: 481  AVDSLQMVGELSSDEESSVGTFREYKDFHADFVHANTEKSNTMIELEAEKYRLEKELKDH 540

Query: 1601 XXXXFILNQKIEXXXXXXXXXXXXWCPSDQIADQEILTEEERQAFRKIGLAMDEVILLGR 1780
                 ILN+KIE            W PS+Q AD+E+LTEEE+  FR+IG  MD ++LLGR
Sbjct: 541  EWKLSILNKKIERSNQALAKLRSSWSPSEQSADRELLTEEEKIMFRRIGRKMDGLVLLGR 600

Query: 1781 RGIYNGVIGSIHQHWKHREVVKVITKQKAKYHVNYSARLLEVECGGILVAVEKLRTSHAI 1960
            RGI++GVI  IHQHWKH+EVVKVITKQ     + Y+A LLEVE GGIL+AVEKL TSHAI
Sbjct: 601  RGIFDGVIEEIHQHWKHKEVVKVITKQNQARQIMYTANLLEVETGGILIAVEKLTTSHAI 660

Query: 1961 IIYRGKNYARPLQLP-DNILTKREALQRSIEIQRRGSLKHFSLQREKAIRKLKQRLRDLE 2137
            I+YRGKNY RP +    N+LTKREAL+RS+E+QRRGS+K+F  +R+K+I +LK+RLR + 
Sbjct: 661  ILYRGKNYRRPAKSSFSNLLTKREALRRSLEVQRRGSMKYFVRERQKSISELKRRLRYVT 720

Query: 2138 RK 2143
            R+
Sbjct: 721  RQ 722


>tpg|DAA49209.1| TPA: chloroplast RNA splicing1 [Zea mays]
          Length = 715

 Score =  554 bits (1427), Expect = e-155
 Identities = 331/721 (45%), Positives = 428/721 (59%), Gaps = 15/721 (2%)
 Frame = +2

Query: 26   PPWILADGADSLKMPTAPWMSSPLVLPRDQVLDPS-----SPRRSARRKHKNDGRANRDL 190
            PPW+      S         S+P V P      PS     SP+ +  RK  N   A + L
Sbjct: 19   PPWLHGSSTQSRD-------SAPPVPPLPAEATPSKFRIDSPKPAPARK--NTKTAAKPL 69

Query: 191  TEKVRGGRSRYAMLGIIRNIKSLRELHSLEADDEKPTSSGVSGGA--QVVDLDIPLGTG- 361
            T  V GGR+  A+LGIIR ++SL    +   +    ++SG +  A    ++L  P   G 
Sbjct: 70   TAGVPGGRTHRAVLGIIRRVRSLELSDAPSPNSVHTSNSGAAAAAFHLTIELSPPREPGQ 129

Query: 362  ---DSGGGRRIPWVSAEVD--KLVFRREKKVKEITAAELVLAPDLLFRLRGEXXXXXXXX 526
               +    R +PW +A  +  K+  RREKK +E T AE  L    L RLR          
Sbjct: 130  YVVEKEKSRAVPWAAARDEGLKVALRREKKPREPTRAETELETHELHRLRRLARGIGRWA 189

Query: 527  XXXXXGVTQVVVEEIQRGWRN-DELVMVRIVEPLRRNMDRAREIVETKTGGLVVWIKRDF 703
                 GVT  VV+E++R W + +EL  VRIVEPLRR+MDRAREI+E KTGGLVVW K D 
Sbjct: 190  RAKKAGVTDEVVKEVRREWASGEELAAVRIVEPLRRSMDRAREILEIKTGGLVVWTKGDM 249

Query: 704  LVIYRGEKYGMILHTPSCYNAVDQVNLGIFDSNRAIFSVNSDGIMEDMENNIYLTNKNSE 883
              +YRG KY          NA          S+  + +V+ D   ++ + +I       +
Sbjct: 250  HFVYRGSKYQQ--------NAKH--------SHTFLTNVHKDDAFQENDQSIC----GQK 289

Query: 884  TQHPVEGSLYEREANRLLDGLGPRFVDWWWRTPLPVDADLLPEVVXXXXXXXXXXXXGIR 1063
             + PV+G+LYERE NRLLD LGPRFVDWWW TPLPVDADLLPE V            G+R
Sbjct: 290  DEEPVKGTLYEREVNRLLDTLGPRFVDWWWDTPLPVDADLLPEFVPGFKTPYRLCPPGVR 349

Query: 1064 VKLTDDELTYLRKLARSLPTHFALGRNTKLQGLASSIIKLWKKSCXXXXXXXXXXQNTNN 1243
              L D+ELTYLRKLAR LPTHFALGRNT+LQGLA++I+KLW+KS           QNTNN
Sbjct: 350  PTLADEELTYLRKLARLLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNN 409

Query: 1244 EQMSLELKRLTGGVLILRNKFFIILYRGKDFLPDGVFNLIEEREAELDKELLVEEEARVS 1423
            EQM+  LK LTGG +ILRNK FIILYRGKDFLP GV   + +REA++  E + EEEAR+ 
Sbjct: 410  EQMAWNLKHLTGGTVILRNKDFIILYRGKDFLPGGVAQTVIQREAQVHDEQVKEEEARLK 469

Query: 1424 STNLTHTMDAISLSSNSAGTRMEFQNIQTNHVRLSIKNHRCQVQIXXXXXXXXXXXXXXX 1603
            + +    +  +S   +S GT  E+Q      V  + +N    +++               
Sbjct: 470  AVDSLQMVGELS-EESSLGTFREYQGFHAKFVHENTENSNTMIELEAEKYRLEKELKDHE 528

Query: 1604 XXXFILNQKIEXXXXXXXXXXXXWCPSDQIADQEILTEEERQAFRKIGLAMDEVILLGRR 1783
                +LN+KIE            W PS+Q AD+E LTEEE+  FR+IG  MD ++LLGRR
Sbjct: 529  WKLSVLNKKIERSNQALAKLHSSWSPSEQSADREHLTEEEKIMFRRIGRKMDGLVLLGRR 588

Query: 1784 GIYNGVIGSIHQHWKHREVVKVITKQKAKYHVNYSARLLEVECGGILVAVEKLRTSHAII 1963
            GI++GVI  IHQHWKH+EVVKVITKQ     + Y+A LLEVE GGIL+AVEKL TSHAII
Sbjct: 589  GIFDGVIEEIHQHWKHKEVVKVITKQNQTRQIMYAASLLEVETGGILIAVEKLTTSHAII 648

Query: 1964 IYRGKNYARPLQLP-DNILTKREALQRSIEIQRRGSLKHFSLQREKAIRKLKQRLRDLER 2140
            +YRGKNY RP +    N+LTKREAL+RSIE+QRRGS+K+F  +R+K+I +LK++LR + R
Sbjct: 649  LYRGKNYRRPAKSSFSNLLTKREALRRSIEVQRRGSMKYFVRERQKSILELKRKLRYVTR 708

Query: 2141 K 2143
            +
Sbjct: 709  Q 709


>ref|NP_001105008.1| chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic precursor [Zea mays]
            gi|75173308|sp|Q9FYT6.1|CRS1_MAIZE RecName:
            Full=Chloroplastic group IIA intron splicing facilitator
            CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
            splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
            SPLICING 1; Flags: Precursor
            gi|9837550|gb|AAG00595.1|AF290414_1 CRS1 [Zea mays]
          Length = 715

 Score =  553 bits (1425), Expect = e-154
 Identities = 331/721 (45%), Positives = 428/721 (59%), Gaps = 15/721 (2%)
 Frame = +2

Query: 26   PPWILADGADSLKMPTAPWMSSPLVLPRDQVLDPS-----SPRRSARRKHKNDGRANRDL 190
            PPW+      S         S+P V P      PS     SP+ +  RK  N   A + L
Sbjct: 19   PPWLHGSSTQSRD-------SAPPVPPLPAEATPSKFRIDSPKPAPARK--NTKTAAKPL 69

Query: 191  TEKVRGGRSRYAMLGIIRNIKSLRELHSLEADDEKPTSSGVSGGA--QVVDLDIPLGTG- 361
            T  V GGR+  A+LGIIR ++SL    +   +    ++SG +  A    ++L  P   G 
Sbjct: 70   TAGVPGGRTHRAVLGIIRRVRSLELSDAPSPNSVHTSNSGAAAAAFHLTIELSPPREPGQ 129

Query: 362  ---DSGGGRRIPWVSAEVD--KLVFRREKKVKEITAAELVLAPDLLFRLRGEXXXXXXXX 526
               +    R +PW +A  +  K+  RREKK +E T AE  L    L RLR          
Sbjct: 130  YVVEKEKSRAVPWAAARDEGLKVALRREKKPREPTRAETELETHELRRLRRLARGIGRWA 189

Query: 527  XXXXXGVTQVVVEEIQRGWRN-DELVMVRIVEPLRRNMDRAREIVETKTGGLVVWIKRDF 703
                 GVT  VV+E++R W + +EL  VRIVEPLRR+MDRAREI+E KTGGLVVW K D 
Sbjct: 190  RAKKAGVTDEVVKEVRREWASGEELAAVRIVEPLRRSMDRAREILEIKTGGLVVWTKGDM 249

Query: 704  LVIYRGEKYGMILHTPSCYNAVDQVNLGIFDSNRAIFSVNSDGIMEDMENNIYLTNKNSE 883
              +YRG KY          NA          S+  + +V+ D   ++ + +I       +
Sbjct: 250  HFVYRGSKYQQ--------NAKH--------SHTFLTNVHKDDAFQENDQSIC----GQK 289

Query: 884  TQHPVEGSLYEREANRLLDGLGPRFVDWWWRTPLPVDADLLPEVVXXXXXXXXXXXXGIR 1063
             + PV+G+LYERE NRLLD LGPRFVDWWW TPLPVDADLLPE V            G+R
Sbjct: 290  DEEPVKGTLYEREVNRLLDTLGPRFVDWWWDTPLPVDADLLPEFVPGSKTPYRLCPPGVR 349

Query: 1064 VKLTDDELTYLRKLARSLPTHFALGRNTKLQGLASSIIKLWKKSCXXXXXXXXXXQNTNN 1243
              L D+ELTYLRKLAR LPTHFALGRNT+LQGLA++I+KLW+KS           QNTNN
Sbjct: 350  PTLADEELTYLRKLARLLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNN 409

Query: 1244 EQMSLELKRLTGGVLILRNKFFIILYRGKDFLPDGVFNLIEEREAELDKELLVEEEARVS 1423
            EQM+  LK LTGG +ILRNK FIILYRGKDFLP GV   + +REA++  E + EEEAR+ 
Sbjct: 410  EQMAWNLKHLTGGTVILRNKDFIILYRGKDFLPGGVAQTVIQREAQVHDEQVKEEEARLK 469

Query: 1424 STNLTHTMDAISLSSNSAGTRMEFQNIQTNHVRLSIKNHRCQVQIXXXXXXXXXXXXXXX 1603
            + +    +  +S   +S GT  E+Q      V  + +N    +++               
Sbjct: 470  AVDSLQMVGELS-EESSLGTFREYQGFHAKFVHENTENSNTMIELEAEKYRLEKELKDHE 528

Query: 1604 XXXFILNQKIEXXXXXXXXXXXXWCPSDQIADQEILTEEERQAFRKIGLAMDEVILLGRR 1783
                +LN+KIE            W PS+Q AD+E LTEEE+  FR+IG  MD ++LLGRR
Sbjct: 529  WKLSVLNKKIERSNQALAKLHSSWSPSEQSADREHLTEEEKIMFRRIGRKMDGLVLLGRR 588

Query: 1784 GIYNGVIGSIHQHWKHREVVKVITKQKAKYHVNYSARLLEVECGGILVAVEKLRTSHAII 1963
            GI++GVI  IHQHWKH+EVVKVITKQ     + Y+A LLEVE GGIL+AVEKL TSHAII
Sbjct: 589  GIFDGVIEEIHQHWKHKEVVKVITKQNQTRQIMYAASLLEVETGGILIAVEKLTTSHAII 648

Query: 1964 IYRGKNYARPLQLP-DNILTKREALQRSIEIQRRGSLKHFSLQREKAIRKLKQRLRDLER 2140
            +YRGKNY RP +    N+LTKREAL+RSIE+QRRGS+K+F  +R+K+I +LK++LR + R
Sbjct: 649  LYRGKNYRRPAKSSFSNLLTKREALRRSIEVQRRGSMKYFVRERQKSILELKRKLRYVTR 708

Query: 2141 K 2143
            +
Sbjct: 709  Q 709


>dbj|BAJ90249.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 730

 Score =  547 bits (1409), Expect = e-153
 Identities = 324/727 (44%), Positives = 429/727 (59%), Gaps = 29/727 (3%)
 Frame = +2

Query: 68   PTAPWMSSP----LVLPRDQVLDPSSPRRSARRKHKNDGRANRDLTEKVRGGRSRYAMLG 235
            P  PW+  P     V P   V  P S +   R++  +   +   L+  V GGR+R A+LG
Sbjct: 17   PPPPWLHGPKTPATVSPSQPVEAPPSSKPPQRQRETST--STNPLSAGVPGGRTRRAVLG 74

Query: 236  IIRNIKSLRELHSLEADDEKPTSSGVSGGAQVVDL-DIPLG------TGDSGGGRRIPWV 394
            IIR ++SL EL       + P+   +      V L  +P+        G  G GR  PW 
Sbjct: 75   IIRRVRSL-EL------SDPPSPKPIHSTRSAVPLFHLPIEECRGEEAGGDGNGRPAPWS 127

Query: 395  SAEVD--KLVFRREKKVKEITAAELVLAPDLLFRLR-GEXXXXXXXXXXXXXGVTQVVVE 565
            +A  +  K   RR+KK ++ T AE +L P  L RLR                GVT  VVE
Sbjct: 128  AARDEGLKAALRRQKKARQPTPAERLLDPAELDRLRRAARGTGDGWLRAKKAGVTDEVVE 187

Query: 566  EIQRGWRN-DELVMVRIVEPLRRNMDRAREIVETKTGGLVVWIKRDFLVIYRGEKY-GMI 739
            ++ R W    EL  V++VEPLRR MDRAREI+E K+GGLVVW K D   +YRG  Y   I
Sbjct: 188  DVCRVWSGGQELAAVQVVEPLRRCMDRAREILEIKSGGLVVWTKGDVHFVYRGSSYLENI 247

Query: 740  LHTPSCYNAVDQVNLGI---------FDSNRAIFSVNSD---GIMEDMENNIYLTNKNSE 883
             H       + +V L            +SN    + ++D   G+   ++ ++ +      
Sbjct: 248  KHRQKSIADIQRVPLEKCTAPGPQWKHESNAEPSTNHNDDAHGVFRGIDPSLAV----HA 303

Query: 884  TQHPVEGSLYEREANRLLDGLGPRFVDWWWRTPLPVDADLLPEVVXXXXXXXXXXXXGIR 1063
             + PVEG+LYERE NRLLD LGPRFVDWWW TPLPVDADLLPEVV            G+R
Sbjct: 304  YEEPVEGTLYEREVNRLLDSLGPRFVDWWWNTPLPVDADLLPEVVPGFKTPFRQCPPGVR 363

Query: 1064 VKLTDDELTYLRKLARSLPTHFALGRNTKLQGLASSIIKLWKKSCXXXXXXXXXXQNTNN 1243
              L D+ELTYLRKLAR LPTHFALGRNT+LQGLA++++KLW+KS           QNTNN
Sbjct: 364  PTLADEELTYLRKLARPLPTHFALGRNTRLQGLAAAVLKLWEKSLIAKIAVKVGIQNTNN 423

Query: 1244 EQMSLELKRLTGGVLILRNKFFIILYRGKDFLPDGVFNLIEEREAELDKELLVEEEARVS 1423
            EQM+  LK LTGG +ILRNK F+ILYRGKDFLP GV   + E+EA +  + + EEEAR+ 
Sbjct: 424  EQMAWNLKHLTGGTIILRNKDFVILYRGKDFLPGGVKQSVIEQEARVYAQQVKEEEARLM 483

Query: 1424 STNLTHTMDAISLSSNSAGTRMEFQNIQTNHVRLSIKNHRCQVQIXXXXXXXXXXXXXXX 1603
              +       +    +S G+  E+Q+ Q NHV+ + +N+   +++               
Sbjct: 484  VMDSLKMFAGLPSEESSVGSFREYQDFQLNHVQETTENNMALIELEAEKHRLEKELKDQE 543

Query: 1604 XXXFILNQKIEXXXXXXXXXXXXWCPSDQIADQEILTEEERQAFRKIGLAMDEVILLGRR 1783
               FIL +KIE            W PS+Q AD+E+LTEEER  FRKIGL MDE +LLGRR
Sbjct: 544  RRLFILTKKIERSNEALAKLHNSWNPSEQSADKELLTEEERMIFRKIGLKMDEHVLLGRR 603

Query: 1784 GIYNGVIGSIHQHWKHREVVKVITKQKAKYHVNYSARLLEVECGGILVAVEKLRTSHAII 1963
            GI++GVI  IHQHWKH+E+VKVITKQ   Y + Y++ LLEVE GG+L+A +KL  SHAII
Sbjct: 604  GIFDGVIEEIHQHWKHKEIVKVITKQNQAYQITYTSMLLEVETGGMLIATQKLTNSHAII 663

Query: 1964 IYRGKNYARPLQ-LPDNILTKREALQRSIEIQRRGSLKHFSLQREKAIRKLKQRLRDLER 2140
            +YRGKNY RP +  P N+LTKREAL+RS+E+QRRGS+K++  +R K+I  L+ RL ++  
Sbjct: 664  LYRGKNYHRPTKSSPSNLLTKREALRRSVEVQRRGSMKYYVWERHKSIEDLQWRLANVIT 723

Query: 2141 KSSEMTI 2161
            K  ++T+
Sbjct: 724  KIRKLTV 730


>dbj|BAJ86158.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 730

 Score =  546 bits (1407), Expect = e-152
 Identities = 324/727 (44%), Positives = 428/727 (58%), Gaps = 29/727 (3%)
 Frame = +2

Query: 68   PTAPWMSSP----LVLPRDQVLDPSSPRRSARRKHKNDGRANRDLTEKVRGGRSRYAMLG 235
            P  PW+  P     V P   V  P S +   R++  +   +   L+  V GGR+R A+LG
Sbjct: 17   PPPPWLHGPKTPATVSPSQPVEAPPSSKPPQRQRETST--STNPLSAGVPGGRTRRAVLG 74

Query: 236  IIRNIKSLRELHSLEADDEKPTSSGVSGGAQVVDL-DIPLG------TGDSGGGRRIPWV 394
            IIR ++SL EL       + P+   +      V L  +P+        G  G GR  PW 
Sbjct: 75   IIRRVRSL-EL------SDPPSPKPIHSTRSAVPLFHLPIEECRGEEAGGDGNGRPAPWS 127

Query: 395  SAEVD--KLVFRREKKVKEITAAELVLAPDLLFRLR-GEXXXXXXXXXXXXXGVTQVVVE 565
            +A  +  K   RR+KK ++ T AE +L P  L RLR                GVT  VVE
Sbjct: 128  AARDEGLKAALRRQKKARQPTPAERLLDPAELDRLRRAARGTGDGWLRAKKAGVTDEVVE 187

Query: 566  EIQRGWRN-DELVMVRIVEPLRRNMDRAREIVETKTGGLVVWIKRDFLVIYRGEKY-GMI 739
            ++ R W    EL  VR+VEPLRR MDRAREI+E K+GGLVVW K D   +YRG  Y   I
Sbjct: 188  DVCRVWSGGQELAAVRVVEPLRRCMDRAREILEIKSGGLVVWTKGDVHFVYRGSSYLENI 247

Query: 740  LHTPSCYNAVDQVNLGI---------FDSNRAIFSVNSD---GIMEDMENNIYLTNKNSE 883
             H       + +V L            +SN    + ++D   G+   ++ ++ +      
Sbjct: 248  KHRQKSIADIQRVPLEKCTAPGPQWKHESNAEPSTNHNDDAHGVFRGIDPSLAV----HA 303

Query: 884  TQHPVEGSLYEREANRLLDGLGPRFVDWWWRTPLPVDADLLPEVVXXXXXXXXXXXXGIR 1063
             + PVEG+LYERE NRLLD LGPRFVDWWW TPLPVDADLLPEVV            G+R
Sbjct: 304  YEEPVEGTLYEREVNRLLDSLGPRFVDWWWNTPLPVDADLLPEVVPGFKTPFRQCPPGVR 363

Query: 1064 VKLTDDELTYLRKLARSLPTHFALGRNTKLQGLASSIIKLWKKSCXXXXXXXXXXQNTNN 1243
              L D+ELTYLRKLAR LPTHFALGRNT+LQGLA++++KLW+KS           QNTNN
Sbjct: 364  PTLADEELTYLRKLARPLPTHFALGRNTRLQGLAAAVLKLWEKSLIAKIAVKVGIQNTNN 423

Query: 1244 EQMSLELKRLTGGVLILRNKFFIILYRGKDFLPDGVFNLIEEREAELDKELLVEEEARVS 1423
            EQM+  LK LTGG +ILRNK F+ILYRGKDFLP GV   + E+EA +  + + EEEAR+ 
Sbjct: 424  EQMAWNLKHLTGGTIILRNKDFVILYRGKDFLPGGVKQSVIEQEARVYAQQVKEEEARLM 483

Query: 1424 STNLTHTMDAISLSSNSAGTRMEFQNIQTNHVRLSIKNHRCQVQIXXXXXXXXXXXXXXX 1603
              +       +    +S G+  E+Q+ Q NHV+ + +N+   +++               
Sbjct: 484  VMDSLKMFAGLPSEESSVGSFREYQDFQLNHVQETTENNMALIELEAEKHRLEKELKDQE 543

Query: 1604 XXXFILNQKIEXXXXXXXXXXXXWCPSDQIADQEILTEEERQAFRKIGLAMDEVILLGRR 1783
               FIL +KIE            W PS+Q AD+E+LTEEER  FRKIGL MDE +LLGRR
Sbjct: 544  RRLFILTKKIERSNEALAKLHNSWNPSEQSADKELLTEEERMIFRKIGLKMDEHVLLGRR 603

Query: 1784 GIYNGVIGSIHQHWKHREVVKVITKQKAKYHVNYSARLLEVECGGILVAVEKLRTSHAII 1963
            GI++GVI  IHQHWKH+E+VKVITKQ   Y + Y++ LLEVE GG+L+A +KL  SHAII
Sbjct: 604  GIFDGVIEEIHQHWKHKEIVKVITKQNQAYQITYTSMLLEVETGGMLIATQKLTNSHAII 663

Query: 1964 IYRGKNYARPLQ-LPDNILTKREALQRSIEIQRRGSLKHFSLQREKAIRKLKQRLRDLER 2140
            +YRGKNY RP +  P N+ TKREAL+RS+E+QRRGS+K++  +R K+I  L+ RL ++  
Sbjct: 664  LYRGKNYHRPTKSSPSNLRTKREALRRSVEVQRRGSMKYYVWERHKSIEDLQWRLANVIT 723

Query: 2141 KSSEMTI 2161
            K  ++T+
Sbjct: 724  KIRKLTV 730


>ref|XP_006482225.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X1 [Citrus sinensis]
            gi|568857343|ref|XP_006482226.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X2 [Citrus sinensis]
          Length = 771

 Score =  541 bits (1395), Expect = e-151
 Identities = 326/730 (44%), Positives = 424/730 (58%), Gaps = 18/730 (2%)
 Frame = +2

Query: 2    ENRPPS-SVPPWILADGADSLKMPTAPWMSSPLVLPRDQVLDPSSPRRSARRKHKNDGRA 178
            +N P +  +P   L+  A   KMPTAPWM SP+VL  D+++ PS P+       K+  + 
Sbjct: 33   QNSPKTLKLPDIKLSPNAPIKKMPTAPWMRSPIVLQPDEIIKPSKPKTK-----KSFKKT 87

Query: 179  NRDLTEKVRGGRSRYAMLGIIRNIKSLRELHSLEADDEKPTSSGVSGGAQVVDLDIPLGT 358
            ++ LT K  G R + AM  II NI+ L++   L+   +K        G    ++      
Sbjct: 88   DKGLTAKESGVRGKQAMKKIIENIEKLQKDQILDETQKKVMEKFEFKGCFEENVSHEEDL 147

Query: 359  GDSGGGRRIPWVSAEVDKLVFRREKKVKEITAAELVLAPDLLFRLRGEXXXXXXXXXXXX 538
                GG+ +PW+    D+ VFRR KK + +T AE +L  +LL RL+ E            
Sbjct: 148  RGGFGGK-VPWLRE--DRFVFRRMKKERMVTKAETMLDGELLERLKDEARKMRKWVKVKK 204

Query: 539  XGVTQVVVEEIQRGWRNDELVMVRIVEPLRRNMDRAREIVETKTGGLVVWIKRDFLVIYR 718
             GVT+ VV EI+  WR +EL MV+   PL RNMDRAREI+E KTGGLV+W K+D  V+YR
Sbjct: 205  AGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYR 264

Query: 719  GEKYGMILHTPSCYNAVD----------------QVNLGIFDSNRAIFSVNSDGIMEDME 850
            G+     +    C  + D                +VN+    SN A    N    ++D E
Sbjct: 265  GDSSKSSVKM--CPRSADDQEAPLSKSTHLHLEKKVNVSWIKSNTATLDQNRS--LKDGE 320

Query: 851  NNIYLTNKNSETQHPVEGSLYEREANRLLDGLGPRFVDWWWRTPLPVDADLLPEVVXXXX 1030
             N   T+   +    ++ SLYERE +RLLDGLGPRFVDWW   PLPVD DLLPEVV    
Sbjct: 321  ENSLPTSIFMDKNLRIDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFK 380

Query: 1031 XXXXXXXXGIRVKLTDDELTYLRKLARSLPTHFALGRNTKLQGLASSIIKLWKKSCXXXX 1210
                      R KLTDDELTYLRKLA  LPTHF LGRN  LQGLA++I+KLW+KS     
Sbjct: 381  PPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKI 440

Query: 1211 XXXXXXQNTNNEQMSLELKRLTGGVLILRNKFFIILYRGKDFLPDGVFNLIEEREAELDK 1390
                   NT+NEQM+ ELK LTGGVL+LRNKF IILYRG DFLP GV NLI ERE EL  
Sbjct: 441  TVKWGIPNTDNEQMANELKHLTGGVLLLRNKFLIILYRGNDFLPCGVENLIVERERELQI 500

Query: 1391 ELLVEEEARVSSTNLTHTMDAISLSSNSAGTRMEFQNIQTNHVRLSIKNHRCQVQIXXXX 1570
                EE AR+ +    H        ++ AGT  EFQNIQ++   L + N   ++Q+    
Sbjct: 501  CQNHEEGARLKAIETFHLPHEPLEKTSKAGTLSEFQNIQSDFGDLKMGNREFELQLEAEI 560

Query: 1571 XXXXXXXXXXXXXXFILNQKIEXXXXXXXXXXXXWCPSDQIADQEILTEEERQAFRKIGL 1750
                          FILN KIE            W P +Q  D E++TEEERQ   KIG+
Sbjct: 561  EDLERELRKQERKLFILNIKIEKSAKELSRLNSAWKPREQDPDLEMITEEERQCLHKIGM 620

Query: 1751 AMDEVILLGRRGIYNGVIGSIHQHWKHREVVKVITKQKAKYHVNYSARLLEVECGGILVA 1930
             M+  +LLGRRG+++GVI  +HQHWK+REV +VITKQK    V Y+A+ L  E GGIL++
Sbjct: 621  KMNSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILIS 680

Query: 1931 VEKLRTSHAIIIYRGKNYARPLQL-PDNILTKREALQRSIEIQRRGSLKHFSLQREKAIR 2107
            V+KL+  HAIIIYRGKNY RPL+L   N+L+KR+AL+RS+E+QR GSLK F+ QR++ I 
Sbjct: 681  VDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSLKFFAYQRQRVIS 740

Query: 2108 KLKQRLRDLE 2137
             LK +L +L+
Sbjct: 741  NLKIKLAELQ 750


>ref|XP_002516757.1| conserved hypothetical protein [Ricinus communis]
            gi|223544130|gb|EEF45655.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 742

 Score =  539 bits (1389), Expect = e-150
 Identities = 322/707 (45%), Positives = 430/707 (60%), Gaps = 7/707 (0%)
 Frame = +2

Query: 59   LKMPTAPWMSSPLVLPRDQVLDPSSPRRSARRKHKNDGRANRDLTEKVRGGRSRYAMLGI 238
            +K+PTAPWM  PL+L   ++++ S PR      + N  ++++ LT K  G R + AM  I
Sbjct: 58   IKVPTAPWMKGPLLLQPHELINLSKPRNKNSSNNANIEKSDKVLTGKESGVRGKKAMEKI 117

Query: 239  IRNIKSLRELHSLEADD-EKPTSSGVSGGAQVVDLDIPLGT----GDSGGGRRI-PWVSA 400
            +++I+ L+E  +LE    +          ++  ++   LG     GD G  +++ PW   
Sbjct: 118  VKSIEQLQENQALEKTQCDSQAYEKTQLDSEAFEIGEKLGLIREHGDFGVNKKLKPWERE 177

Query: 401  EVDKLVFRREKKVKEITAAELVLAPDLLFRLRGEXXXXXXXXXXXXXGVTQVVVEEIQRG 580
            E  K V+ R KK K +T AEL+L  +LL  LR E             GVTQ VV++I+  
Sbjct: 178  E--KFVYWRIKKEKAVTKAELILEKELLEILRTEASKMRKWVKVMKAGVTQSVVDQIRYA 235

Query: 581  WRNDELVMVRIVEPLRRNMDRAREIVETKTGGLVVWIKRDFLVIYRGEKYGMILHTPSCY 760
            WRN+EL MV+   PL RNMDRAREIVE KTGGLVVW ++D LVIYRG  Y +   T S +
Sbjct: 236  WRNNELAMVKFDLPLCRNMDRAREIVELKTGGLVVWTRKDSLVIYRGCNYHL---TKSSH 292

Query: 761  NAVDQVNLGIFDSNRAIFSVNSDGIMEDMENNIYL-TNKNSETQHPVEGSLYEREANRLL 937
             +     +G           + DG  E +  +I++  + N+ T   + GSL+ERE +RLL
Sbjct: 293  VSTMDEKIG-----------SKDGEEEYIPTSIFIGDDANTPT---INGSLFERETDRLL 338

Query: 938  DGLGPRFVDWWWRTPLPVDADLLPEVVXXXXXXXXXXXXGIRVKLTDDELTYLRKLARSL 1117
            DGLGPRFVDWW R PLPVDADLLPEVV              R KL DDELTYLRKLA +L
Sbjct: 339  DGLGPRFVDWWMRKPLPVDADLLPEVVAGFMPPSRFHYA--RAKLKDDELTYLRKLAYAL 396

Query: 1118 PTHFALGRNTKLQGLASSIIKLWKKSCXXXXXXXXXXQNTNNEQMSLELKRLTGGVLILR 1297
            PTHF LGRN +LQGLA++I+KLW++S            NT+NEQM+ ELK LTGGVL+LR
Sbjct: 397  PTHFVLGRNRRLQGLAAAILKLWERSLIAKIAVKWGIPNTDNEQMANELKHLTGGVLLLR 456

Query: 1298 NKFFIILYRGKDFLPDGVFNLIEEREAELDKELLVEEEARVSSTNLTHTMDAISLSSNSA 1477
            NKFFIIL+RGKDFLP  V +L+ +RE EL    L EE AR+ +   + T D + + +   
Sbjct: 457  NKFFIILFRGKDFLPCQVADLVVKRENELKICQLNEEGARLKAIETSFTDDELVVKATKI 516

Query: 1478 GTRMEFQNIQTNHVRLSIKNHRCQVQIXXXXXXXXXXXXXXXXXXFILNQKIEXXXXXXX 1657
            GT  EFQ+IQ     L+      ++Q+                   IL  KIE       
Sbjct: 517  GTLNEFQDIQVRFKELAKGYRDSKLQLEAEKEKLERELRIQEHKLLILKSKIEKSARELS 576

Query: 1658 XXXXXWCPSDQIADQEILTEEERQAFRKIGLAMDEVILLGRRGIYNGVIGSIHQHWKHRE 1837
                 W P+DQ AD E++TEEER+  RKIGL M   +LLGRRG+++GVI  +HQHWKHRE
Sbjct: 577  KLNSAWAPADQDADLEMMTEEERECLRKIGLKMRSSLLLGRRGVFDGVIEGLHQHWKHRE 636

Query: 1838 VVKVITKQKAKYHVNYSARLLEVECGGILVAVEKLRTSHAIIIYRGKNYARPLQLPDNIL 2017
            VVKVI+ Q+    V  +A+ LE E GGILV+++KL+  HAIIIYRGKNY RP +L +N+L
Sbjct: 637  VVKVISLQRMFAQVIRTAKFLEAETGGILVSIDKLKEGHAIIIYRGKNYRRPQRLLNNLL 696

Query: 2018 TKREALQRSIEIQRRGSLKHFSLQREKAIRKLKQRLRDLERKSSEMT 2158
            TKR+AL RS+E+QR GSL+ F+ QR+ +IR+LK +L  L+ +S E T
Sbjct: 697  TKRKALCRSLEMQRIGSLRFFAYQRQHSIRELKFQLAQLQ-ESEERT 742


>gb|EOY04144.1| maize chloroplast splicing factor CRS1, putative isoform 2 [Theobroma
            cacao]
          Length = 804

 Score =  538 bits (1386), Expect = e-150
 Identities = 327/721 (45%), Positives = 425/721 (58%), Gaps = 28/721 (3%)
 Frame = +2

Query: 59   LKMPTAPWMSSPLVLPRDQVLDPS--SPRRSARRKHKNDGRANRDLTEKVRGGRSRYAML 232
            +KMPTAPWM  PL+L   +VL+PS  + ++S+  K K   +A   L  K  G R +  M 
Sbjct: 88   IKMPTAPWMKGPLLLQPHEVLNPSKSTSKKSSNSKAKAPDKA---LFGKESGVRGKKVMK 144

Query: 233  GIIRNIKSLRELHSLEADDEKPTSSGVSGGAQVVDLDIPLGTGDSGGGRR----IPWVSA 400
             IIRN++ L+    LE      T  G+    +V +     G+   G  +R    +PW+  
Sbjct: 145  KIIRNVEMLQGNEVLE-----DTQIGIREEFEVGNWLEEFGS--DGEVKRFDGKMPWLRE 197

Query: 401  EVDKLVFRREKKVKEITAAELVLAPDLLFRLRGEXXXXXXXXXXXXXGVTQVVVEEIQRG 580
            E +K+VFRR KK K +T AE+ L  DLL RLR +             GVT+ VV+EI+  
Sbjct: 198  E-EKVVFRRMKKEKLLTQAEISLDKDLLERLRRKAMRMRKWIKVMKLGVTKAVVDEIKLA 256

Query: 581  WRNDELVMVRIVEPLRRNMDRAREIVETKTGGLVVWIKRDFLVIYRGEKYGMI-----LH 745
            WR +ELVMV+   PL RNMDRAREI+E KT GLVVW K+D LV+YRG  +G+      + 
Sbjct: 257  WRKNELVMVKFGVPLCRNMDRAREIIEMKTRGLVVWGKKDALVVYRGCSHGLTSKISSMK 316

Query: 746  TPSCYNAVD-------------QVNLGIFDSNRAIFS---VNSDGIMEDMENNIYLTNKN 877
             P C +  +              +N+ +   N +         D   E M  NI++  K 
Sbjct: 317  YPRCADGQEISSSTFSHLTSSNNINMSLEKFNGSTLQSGLYREDREKESMPINIFM--KE 374

Query: 878  SETQHPVEGSLYEREANRLLDGLGPRFVDWWWRTPLPVDADLLPEVVXXXXXXXXXXXXG 1057
             E   PV GSLYERE +RLLDGLGPRF+DWW R PLP+DADLLPE V             
Sbjct: 375  DENNQPVIGSLYERETDRLLDGLGPRFIDWWMRKPLPIDADLLPEEVPGFRPPLRLSPPN 434

Query: 1058 IRVKLTDDELTYLRKLARSLPTHFALGRNTKLQGLASSIIKLWKKSCXXXXXXXXXXQNT 1237
             R  LTDDEL YLRKL   LP HFALG+N  LQGLA++I+KLW+KS           QNT
Sbjct: 435  TRPNLTDDELKYLRKLTHPLPFHFALGKNRNLQGLAAAILKLWEKSLIAKIAIKWGIQNT 494

Query: 1238 NNEQMSLELKRLTGGVLILRNKFFIILYRGKDFLPDGVFNLIEEREAELDKELLVEEEAR 1417
            +NEQM+ ELK LTGGVL++RNKF +ILYRGKDFLP GV NL+ ERE  L +  L EE AR
Sbjct: 495  DNEQMAYELKNLTGGVLLVRNKFLLILYRGKDFLPQGVANLVVEREMALRRCQLNEEGAR 554

Query: 1418 VSSTNLTHTMDAISLSSNSAGTRMEFQNIQTNHVRLSIKNHRCQVQIXXXXXXXXXXXXX 1597
            V         D     +++ GT  EF++IQT    L  ++   ++Q+             
Sbjct: 555  VKVAETCQVADEPLAKTSTVGTLSEFEDIQTRFGDLKKESSELELQLEAQKENLERELRN 614

Query: 1598 XXXXXFILNQKIEXXXXXXXXXXXXWCPSDQIADQEILTEEERQAFRKIGLAMDEVILLG 1777
                  ILN KIE              P++Q  D EI+TEEER+  RKIGL ++  ++LG
Sbjct: 615  QERKLSILNIKIEKSAKELAKLKSSRQPAEQDVDLEIITEEERECLRKIGLKLNSFLVLG 674

Query: 1778 RRGIYNGVIGSIHQHWKHREVVKVITKQKAKYHVNYSARLLEVECGGILVAVEKLRTSHA 1957
            RRG++NGVI  ++QHWKHREVVKVIT Q+    V Y+A+ L  E GGILV+VEKL+  HA
Sbjct: 675  RRGVFNGVIEGVYQHWKHREVVKVITMQRVFARVIYTAKFLVAETGGILVSVEKLKEGHA 734

Query: 1958 IIIYRGKNYARPLQL-PDNILTKREALQRSIEIQRRGSLKHFSLQREKAIRKLKQRLRDL 2134
            +IIYRGKNY RPL+L  +N+LTKREAL++SIE+QR GSLK F+ QR +AI  LK +L +L
Sbjct: 735  LIIYRGKNYRRPLKLMTNNLLTKREALRQSIELQRIGSLKFFAYQRRQAILDLKLKLAEL 794

Query: 2135 E 2137
            +
Sbjct: 795  K 795


>gb|EOY04143.1| maize chloroplast splicing factor CRS1, putative isoform 1 [Theobroma
            cacao]
          Length = 818

 Score =  538 bits (1386), Expect = e-150
 Identities = 327/721 (45%), Positives = 425/721 (58%), Gaps = 28/721 (3%)
 Frame = +2

Query: 59   LKMPTAPWMSSPLVLPRDQVLDPS--SPRRSARRKHKNDGRANRDLTEKVRGGRSRYAML 232
            +KMPTAPWM  PL+L   +VL+PS  + ++S+  K K   +A   L  K  G R +  M 
Sbjct: 88   IKMPTAPWMKGPLLLQPHEVLNPSKSTSKKSSNSKAKAPDKA---LFGKESGVRGKKVMK 144

Query: 233  GIIRNIKSLRELHSLEADDEKPTSSGVSGGAQVVDLDIPLGTGDSGGGRR----IPWVSA 400
             IIRN++ L+    LE      T  G+    +V +     G+   G  +R    +PW+  
Sbjct: 145  KIIRNVEMLQGNEVLE-----DTQIGIREEFEVGNWLEEFGS--DGEVKRFDGKMPWLRE 197

Query: 401  EVDKLVFRREKKVKEITAAELVLAPDLLFRLRGEXXXXXXXXXXXXXGVTQVVVEEIQRG 580
            E +K+VFRR KK K +T AE+ L  DLL RLR +             GVT+ VV+EI+  
Sbjct: 198  E-EKVVFRRMKKEKLLTQAEISLDKDLLERLRRKAMRMRKWIKVMKLGVTKAVVDEIKLA 256

Query: 581  WRNDELVMVRIVEPLRRNMDRAREIVETKTGGLVVWIKRDFLVIYRGEKYGMI-----LH 745
            WR +ELVMV+   PL RNMDRAREI+E KT GLVVW K+D LV+YRG  +G+      + 
Sbjct: 257  WRKNELVMVKFGVPLCRNMDRAREIIEMKTRGLVVWGKKDALVVYRGCSHGLTSKISSMK 316

Query: 746  TPSCYNAVD-------------QVNLGIFDSNRAIFS---VNSDGIMEDMENNIYLTNKN 877
             P C +  +              +N+ +   N +         D   E M  NI++  K 
Sbjct: 317  YPRCADGQEISSSTFSHLTSSNNINMSLEKFNGSTLQSGLYREDREKESMPINIFM--KE 374

Query: 878  SETQHPVEGSLYEREANRLLDGLGPRFVDWWWRTPLPVDADLLPEVVXXXXXXXXXXXXG 1057
             E   PV GSLYERE +RLLDGLGPRF+DWW R PLP+DADLLPE V             
Sbjct: 375  DENNQPVIGSLYERETDRLLDGLGPRFIDWWMRKPLPIDADLLPEEVPGFRPPLRLSPPN 434

Query: 1058 IRVKLTDDELTYLRKLARSLPTHFALGRNTKLQGLASSIIKLWKKSCXXXXXXXXXXQNT 1237
             R  LTDDEL YLRKL   LP HFALG+N  LQGLA++I+KLW+KS           QNT
Sbjct: 435  TRPNLTDDELKYLRKLTHPLPFHFALGKNRNLQGLAAAILKLWEKSLIAKIAIKWGIQNT 494

Query: 1238 NNEQMSLELKRLTGGVLILRNKFFIILYRGKDFLPDGVFNLIEEREAELDKELLVEEEAR 1417
            +NEQM+ ELK LTGGVL++RNKF +ILYRGKDFLP GV NL+ ERE  L +  L EE AR
Sbjct: 495  DNEQMAYELKNLTGGVLLVRNKFLLILYRGKDFLPQGVANLVVEREMALRRCQLNEEGAR 554

Query: 1418 VSSTNLTHTMDAISLSSNSAGTRMEFQNIQTNHVRLSIKNHRCQVQIXXXXXXXXXXXXX 1597
            V         D     +++ GT  EF++IQT    L  ++   ++Q+             
Sbjct: 555  VKVAETCQVADEPLAKTSTVGTLSEFEDIQTRFGDLKKESSELELQLEAQKENLERELRN 614

Query: 1598 XXXXXFILNQKIEXXXXXXXXXXXXWCPSDQIADQEILTEEERQAFRKIGLAMDEVILLG 1777
                  ILN KIE              P++Q  D EI+TEEER+  RKIGL ++  ++LG
Sbjct: 615  QERKLSILNIKIEKSAKELAKLKSSRQPAEQDVDLEIITEEERECLRKIGLKLNSFLVLG 674

Query: 1778 RRGIYNGVIGSIHQHWKHREVVKVITKQKAKYHVNYSARLLEVECGGILVAVEKLRTSHA 1957
            RRG++NGVI  ++QHWKHREVVKVIT Q+    V Y+A+ L  E GGILV+VEKL+  HA
Sbjct: 675  RRGVFNGVIEGVYQHWKHREVVKVITMQRVFARVIYTAKFLVAETGGILVSVEKLKEGHA 734

Query: 1958 IIIYRGKNYARPLQL-PDNILTKREALQRSIEIQRRGSLKHFSLQREKAIRKLKQRLRDL 2134
            +IIYRGKNY RPL+L  +N+LTKREAL++SIE+QR GSLK F+ QR +AI  LK +L +L
Sbjct: 735  LIIYRGKNYRRPLKLMTNNLLTKREALRQSIELQRIGSLKFFAYQRRQAILDLKLKLAEL 794

Query: 2135 E 2137
            +
Sbjct: 795  K 795


>ref|NP_001061635.1| Os08g0360100 [Oryza sativa Japonica Group]
            gi|75132343|sp|Q6YYA3.1|CRS1_ORYSJ RecName:
            Full=Chloroplastic group IIA intron splicing facilitator
            CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
            splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
            SPLICING 1; Flags: Precursor gi|38637564|dbj|BAD03815.1|
            putative CRS1 [Oryza sativa Japonica Group]
            gi|113623604|dbj|BAF23549.1| Os08g0360100 [Oryza sativa
            Japonica Group]
          Length = 725

 Score =  538 bits (1386), Expect = e-150
 Identities = 323/713 (45%), Positives = 421/713 (59%), Gaps = 26/713 (3%)
 Frame = +2

Query: 74   APWMSSPLVLPRDQVLD-PSSPR--RSARRKHKNDGRANRDLTEKVRGGRSRYAMLGIIR 244
            +P + S  V P D   + P +P+  R  R   +N G A + LT  V GGR+R A+LGIIR
Sbjct: 10   SPHVPSTSVSPPDPATEAPPAPKQHRGPRPAPRNPGSA-KPLTAGVPGGRTRRAVLGIIR 68

Query: 245  NIKSLRELHSLEADDEKPTSSGVSGGAQV------VDLDIPLGTGD---------SGGGR 379
             ++SL EL    +D   P+ +G  G +        V   +P+              G  R
Sbjct: 69   KVRSL-EL----SDPRTPSPNGGGGSSSSSTATARVPFHLPIHPPPPEREEEEEKKGIRR 123

Query: 380  RIPWVSA--EVDKLVFRREKKVKEITAAELVLAPDLLFRLRGEXXXXXXXXXXXXXGVTQ 553
             +PW +A  E  K+V RREKK +  T AE  L    L RLR               G+T 
Sbjct: 124  AVPWAAARDEETKVVLRREKKTRVPTRAETELEAGELERLRRAARGKERWARAKKAGITD 183

Query: 554  VVVEEIQRGW-RNDELVMVRIVEPLRRNMDRAREIVETKTGGLVVWIKRDFLVIYRGEKY 730
             VVEE++  W +  EL  VRIVEPLRR MDRAREI+E KTGGLVVW +     +YRG  Y
Sbjct: 184  EVVEEVRGQWAKGQELAGVRIVEPLRRCMDRAREILEIKTGGLVVWTRGGIHFVYRGSSY 243

Query: 731  GMILHTPSCYNAVDQVNLGIFDSNRAIFSVNSDGIMEDMENNIYLTNKNSETQH----PV 898
                   +     D VN    +    + S N     +    +  LTN N E       P+
Sbjct: 244  -----LENAKRHRDFVNYN--EELSPVTSNNPTSQGKYWSKDETLTNDNDEADDKDDKPI 296

Query: 899  EGSLYEREANRLLDGLGPRFVDWWWRTPLPVDADLLPEVVXXXXXXXXXXXXGIRVKLTD 1078
            +G+LYERE NRLLD LGPRF+DWWW TPLPVDADLLPEVV            G+R  L D
Sbjct: 297  KGTLYEREVNRLLDSLGPRFIDWWWNTPLPVDADLLPEVVPDFKTPFRQCPPGVRPALAD 356

Query: 1079 DELTYLRKLARSLPTHFALGRNTKLQGLASSIIKLWKKSCXXXXXXXXXXQNTNNEQMSL 1258
            +ELTYLRK AR LPTHF LGRNTKLQGLA++I+KLW+KS           QNTN+EQM+ 
Sbjct: 357  EELTYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEKSLIAKVAVKVGIQNTNHEQMAR 416

Query: 1259 ELKRLTGGVLILRNKFFIILYRGKDFLPDGVFNLIEEREAELDKELLVEEEARVSSTNLT 1438
             LKRLTGG +ILRNK +II+YRGKDFLP GV   + ERE+++  +   EEEAR+   +  
Sbjct: 417  NLKRLTGGTVILRNKDYIIIYRGKDFLPGGVAESVIERESQVHDQQAKEEEARLKMADSL 476

Query: 1439 HTMDAISLSSNSAGTRMEFQNIQTNHVRLSIKNHRCQVQIXXXXXXXXXXXXXXXXXXFI 1618
              +  +S   +  GT  E+Q+   +H R + +N+  ++Q+                   +
Sbjct: 477  QMIVGLSSERSYVGTFREYQDFHDSHARRTTENN-FRIQLEAKKHRLEKELKDQEWRLSM 535

Query: 1619 LNQKIEXXXXXXXXXXXXWCPSDQIADQEILTEEERQAFRKIGLAMDEVILLGRRGIYNG 1798
            L +KIE            W PS +  D+E+LTEEER+ FRKIGL MDE +LLGRRG++ G
Sbjct: 536  LTKKIERSNQVLAKLHSSWSPSKKDGDRELLTEEERRIFRKIGLKMDEHVLLGRRGVFEG 595

Query: 1799 VIGSIHQHWKHREVVKVITKQKAKYHVNYSARLLEVECGGILVAVEKLRTSHAIIIYRGK 1978
            VI  IHQHWKH+EVVKVITKQ     + Y++ +LEVE GG L+A+E+  TSHAII+YRGK
Sbjct: 596  VIEEIHQHWKHKEVVKVITKQNQASQITYTSMMLEVETGGTLIAIERFTTSHAIILYRGK 655

Query: 1979 NYARPLQ-LPDNILTKREALQRSIEIQRRGSLKHFSLQREKAIRKLKQRLRDL 2134
            NY RP +  P N+LTKREALQRSIE+QRRGS+K+F+ +R+K+I +LK+ LR++
Sbjct: 656  NYRRPTKSAPSNLLTKREALQRSIEVQRRGSMKYFAQERKKSIDELKRELRNV 708


>gb|EEE68561.1| hypothetical protein OsJ_27045 [Oryza sativa Japonica Group]
          Length = 725

 Score =  538 bits (1386), Expect = e-150
 Identities = 323/713 (45%), Positives = 421/713 (59%), Gaps = 26/713 (3%)
 Frame = +2

Query: 74   APWMSSPLVLPRDQVLD-PSSPR--RSARRKHKNDGRANRDLTEKVRGGRSRYAMLGIIR 244
            +P + S  V P D   + P +P+  R  R   +N G A + LT  V GGR+R A+LGIIR
Sbjct: 10   SPHVPSTSVSPPDPATEAPPAPKQHRGPRPAPRNPGSA-KPLTAGVPGGRTRRAVLGIIR 68

Query: 245  NIKSLRELHSLEADDEKPTSSGVSGGAQV------VDLDIPLGTGD---------SGGGR 379
             ++SL EL    +D   P+ +G  G +        V   +P+              G  R
Sbjct: 69   KVRSL-EL----SDPRTPSPNGGGGSSSSSTATARVPFHLPIHPPPPEREEEEEKKGIRR 123

Query: 380  RIPWVSA--EVDKLVFRREKKVKEITAAELVLAPDLLFRLRGEXXXXXXXXXXXXXGVTQ 553
             +PW +A  E  K+V RREKK +  T AE  L    L RLR               G+T 
Sbjct: 124  AVPWAAARDEETKVVLRREKKTRVPTRAETELEAGELERLRRAARGKERWARAKKAGITD 183

Query: 554  VVVEEIQRGW-RNDELVMVRIVEPLRRNMDRAREIVETKTGGLVVWIKRDFLVIYRGEKY 730
             VVEE++  W +  EL  VRIVEPLRR MDRAREI+E KTGGLVVW +     +YRG  Y
Sbjct: 184  EVVEEVRGQWAKGQELAGVRIVEPLRRCMDRAREILEIKTGGLVVWTRGGIHFVYRGSSY 243

Query: 731  GMILHTPSCYNAVDQVNLGIFDSNRAIFSVNSDGIMEDMENNIYLTNKNSETQH----PV 898
                   +     D VN    +    + S N     +    +  LTN N E       P+
Sbjct: 244  -----LENAKRHRDFVNYN--EELSPVTSNNPTSQGKYWSKDETLTNDNDEADDKDDKPI 296

Query: 899  EGSLYEREANRLLDGLGPRFVDWWWRTPLPVDADLLPEVVXXXXXXXXXXXXGIRVKLTD 1078
            +G+LYERE NRLLD LGPRF+DWWW TPLPVDADLLPEVV            G+R  L D
Sbjct: 297  KGTLYEREVNRLLDSLGPRFIDWWWNTPLPVDADLLPEVVPDFKTPFRQCPPGVRPALAD 356

Query: 1079 DELTYLRKLARSLPTHFALGRNTKLQGLASSIIKLWKKSCXXXXXXXXXXQNTNNEQMSL 1258
            +ELTYLRK AR LPTHF LGRNTKLQGLA++I+KLW+KS           QNTN+EQM+ 
Sbjct: 357  EELTYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEKSLIAKVAVKVGIQNTNHEQMAR 416

Query: 1259 ELKRLTGGVLILRNKFFIILYRGKDFLPDGVFNLIEEREAELDKELLVEEEARVSSTNLT 1438
             LKRLTGG +ILRNK +II+YRGKDFLP GV   + ERE+++  +   EEEAR+   +  
Sbjct: 417  NLKRLTGGTVILRNKDYIIIYRGKDFLPGGVAESVIERESQVHDQQAKEEEARLKMADSL 476

Query: 1439 HTMDAISLSSNSAGTRMEFQNIQTNHVRLSIKNHRCQVQIXXXXXXXXXXXXXXXXXXFI 1618
              +  +S   +  GT  E+Q+   +H R + +N+  ++Q+                   +
Sbjct: 477  QMIVGLSSERSYVGTFREYQDFHDSHARRTTENN-FRIQLEAKKHRLEKELKDQEWRLSM 535

Query: 1619 LNQKIEXXXXXXXXXXXXWCPSDQIADQEILTEEERQAFRKIGLAMDEVILLGRRGIYNG 1798
            L +KIE            W PS +  D+E+LTEEER+ FRKIGL MDE +LLGRRG++ G
Sbjct: 536  LTKKIERSNQVLAKLHSSWSPSKKDGDRELLTEEERRIFRKIGLKMDEHVLLGRRGVFEG 595

Query: 1799 VIGSIHQHWKHREVVKVITKQKAKYHVNYSARLLEVECGGILVAVEKLRTSHAIIIYRGK 1978
            VI  IHQHWKH+EVVKVITKQ     + Y++ +LEVE GG L+A+E+  TSHAII+YRGK
Sbjct: 596  VIEEIHQHWKHKEVVKVITKQNQASQITYTSMMLEVETGGTLIAIERFTTSHAIILYRGK 655

Query: 1979 NYARPLQ-LPDNILTKREALQRSIEIQRRGSLKHFSLQREKAIRKLKQRLRDL 2134
            NY RP +  P N+LTKREALQRSIE+QRRGS+K+F+ +R+K+I +LK+ LR++
Sbjct: 656  NYRRPTKSAPSNLLTKREALQRSIEVQRRGSMKYFAQERKKSIDELKRELRNV 708


>ref|XP_006660084.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Oryza brachyantha]
          Length = 621

 Score =  536 bits (1381), Expect = e-149
 Identities = 298/602 (49%), Positives = 380/602 (63%), Gaps = 8/602 (1%)
 Frame = +2

Query: 362  DSGGGRRIPWVSAEVD--KLVFRREKKVKEITAAELVLAPDLLFRLRGEXXXXXXXXXXX 535
            + G  R +PW +A  +  K+V RREKKV+  T AE  L P  L RLR             
Sbjct: 7    EKGRQRAVPWAAARDEELKVVLRREKKVRVPTRAEAELEPAELERLRQLARGMDRWARAK 66

Query: 536  XXGVTQVVVEEIQRGW--RNDELVMVRIVEPLRRNMDRAREIVETKTGGLVVWIKRDFLV 709
              G+T  VVEE++  W  R  EL  VRIVEPL+RNMDRAREI+E KTGG+VVW K D   
Sbjct: 67   KAGITDEVVEELRGAWARRVQELAGVRIVEPLQRNMDRAREILEIKTGGIVVWTKGDIHF 126

Query: 710  IYRGEKY--GMILHTPSCYNAVDQVNLGIFDSNRAIFSVNSDGIME-DMENNIYLTNKNS 880
            +YRG  Y      H    +N         F +++  +   ++   E D   +++  N+  
Sbjct: 127  VYRGANYIENSKRHHDFVHNEEVSPVTANFPASQGKYGSKAESFHENDQSIDVHKDNE-- 184

Query: 881  ETQHPVEGSLYEREANRLLDGLGPRFVDWWWRTPLPVDADLLPEVVXXXXXXXXXXXXGI 1060
                PV+G+LYERE NRLLD LGPRFVDWWW TPLPVDADLLPEVV            G+
Sbjct: 185  ----PVKGTLYEREVNRLLDSLGPRFVDWWWNTPLPVDADLLPEVVPGFKTPFRQCPPGV 240

Query: 1061 RVKLTDDELTYLRKLARSLPTHFALGRNTKLQGLASSIIKLWKKSCXXXXXXXXXXQNTN 1240
            R  L D ELTYLRKLAR LPTHFALGRNTKLQGLA++I+KLW+KS           QNTN
Sbjct: 241  RPTLADQELTYLRKLARPLPTHFALGRNTKLQGLAAAILKLWEKSLIAKIAVKVGIQNTN 300

Query: 1241 NEQMSLELKRLTGGVLILRNKFFIILYRGKDFLPDGVFNLIEEREAELDKELLVEEEARV 1420
            +EQM+  LKRLTGG +ILRNK FII+YRGKDFLP  V   + ERE+++  +   EEEAR+
Sbjct: 301  HEQMARNLKRLTGGTVILRNKDFIIIYRGKDFLPGDVAESVIERESQVHDQQAKEEEARL 360

Query: 1421 SSTNLTHTMDAISLSSNSAGTRMEFQNIQTNHVRLSIKNHRCQVQIXXXXXXXXXXXXXX 1600
               +    + A+S   +S GT  E+Q+ Q NH   + +N+  ++Q+              
Sbjct: 361  KVVDSLQMLAAVSPEKSSVGTFREYQDFQDNHECGTTENNNVRIQLEAKKHLLEKELKDH 420

Query: 1601 XXXXFILNQKIEXXXXXXXXXXXXWCPSDQIADQEILTEEERQAFRKIGLAMDEVILLGR 1780
                  L +KIE            W PS+Q  D+E+LTEEER   RKIGL MDE +LLGR
Sbjct: 421  EWRLSTLTKKIERSNQVLAKLHSSWSPSEQDGDRELLTEEERMILRKIGLKMDEHVLLGR 480

Query: 1781 RGIYNGVIGSIHQHWKHREVVKVITKQKAKYHVNYSARLLEVECGGILVAVEKLRTSHAI 1960
            RGI+ GVI  IHQHWKH+EVVKVITKQ     + Y++ +LEVE GG+L+A+E+L TSHAI
Sbjct: 481  RGIFEGVIEEIHQHWKHKEVVKVITKQNQARQITYTSMMLEVETGGMLIAIERLTTSHAI 540

Query: 1961 IIYRGKNYARPLQ-LPDNILTKREALQRSIEIQRRGSLKHFSLQREKAIRKLKQRLRDLE 2137
            I+YRGKNY RP +  P N+LTKREALQRSIE+QRRGSLK+F+ +R+K+I +LK+RL ++ 
Sbjct: 541  ILYRGKNYRRPSKSSPSNLLTKREALQRSIEVQRRGSLKYFAQERKKSIDELKRRLTNVV 600

Query: 2138 RK 2143
            R+
Sbjct: 601  RE 602


>gb|EOY04146.1| maize chloroplast splicing factor CRS1, putative isoform 4 [Theobroma
            cacao]
          Length = 767

 Score =  536 bits (1380), Expect = e-149
 Identities = 326/717 (45%), Positives = 422/717 (58%), Gaps = 28/717 (3%)
 Frame = +2

Query: 59   LKMPTAPWMSSPLVLPRDQVLDPS--SPRRSARRKHKNDGRANRDLTEKVRGGRSRYAML 232
            +KMPTAPWM  PL+L   +VL+PS  + ++S+  K K   +A   L  K  G R +  M 
Sbjct: 62   IKMPTAPWMKGPLLLQPHEVLNPSKSTSKKSSNSKAKAPDKA---LFGKESGVRGKKVMK 118

Query: 233  GIIRNIKSLRELHSLEADDEKPTSSGVSGGAQVVDLDIPLGTGDSGGGRR----IPWVSA 400
             IIRN++ L+    LE      T  G+    +V +     G+   G  +R    +PW+  
Sbjct: 119  KIIRNVEMLQGNEVLE-----DTQIGIREEFEVGNWLEEFGS--DGEVKRFDGKMPWLRE 171

Query: 401  EVDKLVFRREKKVKEITAAELVLAPDLLFRLRGEXXXXXXXXXXXXXGVTQVVVEEIQRG 580
            E +K+VFRR KK K +T AE+ L  DLL RLR +             GVT+ VV+EI+  
Sbjct: 172  E-EKVVFRRMKKEKLLTQAEISLDKDLLERLRRKAMRMRKWIKVMKLGVTKAVVDEIKLA 230

Query: 581  WRNDELVMVRIVEPLRRNMDRAREIVETKTGGLVVWIKRDFLVIYRGEKYGMI-----LH 745
            WR +ELVMV+   PL RNMDRAREI+E KT GLVVW K+D LV+YRG  +G+      + 
Sbjct: 231  WRKNELVMVKFGVPLCRNMDRAREIIEMKTRGLVVWGKKDALVVYRGCSHGLTSKISSMK 290

Query: 746  TPSCYNAVD-------------QVNLGIFDSNRAIFS---VNSDGIMEDMENNIYLTNKN 877
             P C +  +              +N+ +   N +         D   E M  NI++  K 
Sbjct: 291  YPRCADGQEISSSTFSHLTSSNNINMSLEKFNGSTLQSGLYREDREKESMPINIFM--KE 348

Query: 878  SETQHPVEGSLYEREANRLLDGLGPRFVDWWWRTPLPVDADLLPEVVXXXXXXXXXXXXG 1057
             E   PV GSLYERE +RLLDGLGPRF+DWW R PLP+DADLLPE V             
Sbjct: 349  DENNQPVIGSLYERETDRLLDGLGPRFIDWWMRKPLPIDADLLPEEVPGFRPPLRLSPPN 408

Query: 1058 IRVKLTDDELTYLRKLARSLPTHFALGRNTKLQGLASSIIKLWKKSCXXXXXXXXXXQNT 1237
             R  LTDDEL YLRKL   LP HFALG+N  LQGLA++I+KLW+KS           QNT
Sbjct: 409  TRPNLTDDELKYLRKLTHPLPFHFALGKNRNLQGLAAAILKLWEKSLIAKIAIKWGIQNT 468

Query: 1238 NNEQMSLELKRLTGGVLILRNKFFIILYRGKDFLPDGVFNLIEEREAELDKELLVEEEAR 1417
            +NEQM+ ELK LTGGVL++RNKF +ILYRGKDFLP GV NL+ ERE  L +  L EE AR
Sbjct: 469  DNEQMAYELKNLTGGVLLVRNKFLLILYRGKDFLPQGVANLVVEREMALRRCQLNEEGAR 528

Query: 1418 VSSTNLTHTMDAISLSSNSAGTRMEFQNIQTNHVRLSIKNHRCQVQIXXXXXXXXXXXXX 1597
            V         D     +++ GT  EF++IQT    L  ++   ++Q+             
Sbjct: 529  VKVAETCQVADEPLAKTSTVGTLSEFEDIQTRFGDLKKESSELELQLEAQKENLERELRN 588

Query: 1598 XXXXXFILNQKIEXXXXXXXXXXXXWCPSDQIADQEILTEEERQAFRKIGLAMDEVILLG 1777
                  ILN KIE              P++Q  D EI+TEEER+  RKIGL ++  ++LG
Sbjct: 589  QERKLSILNIKIEKSAKELAKLKSSRQPAEQDVDLEIITEEERECLRKIGLKLNSFLVLG 648

Query: 1778 RRGIYNGVIGSIHQHWKHREVVKVITKQKAKYHVNYSARLLEVECGGILVAVEKLRTSHA 1957
            RRG++NGVI  ++QHWKHREVVKVIT Q+    V Y+A+ L  E GGILV+VEKL+  HA
Sbjct: 649  RRGVFNGVIEGVYQHWKHREVVKVITMQRVFARVIYTAKFLVAETGGILVSVEKLKEGHA 708

Query: 1958 IIIYRGKNYARPLQL-PDNILTKREALQRSIEIQRRGSLKHFSLQREKAIRKLKQRL 2125
            +IIYRGKNY RPL+L  +N+LTKREAL++SIE+QR GSLK F+ QR +AI  LK +L
Sbjct: 709  LIIYRGKNYRRPLKLMTNNLLTKREALRQSIELQRIGSLKFFAYQRRQAILDLKLKL 765


>gb|EOY04145.1| maize chloroplast splicing factor CRS1, putative isoform 3 [Theobroma
            cacao]
          Length = 788

 Score =  536 bits (1380), Expect = e-149
 Identities = 326/717 (45%), Positives = 422/717 (58%), Gaps = 28/717 (3%)
 Frame = +2

Query: 59   LKMPTAPWMSSPLVLPRDQVLDPS--SPRRSARRKHKNDGRANRDLTEKVRGGRSRYAML 232
            +KMPTAPWM  PL+L   +VL+PS  + ++S+  K K   +A   L  K  G R +  M 
Sbjct: 62   IKMPTAPWMKGPLLLQPHEVLNPSKSTSKKSSNSKAKAPDKA---LFGKESGVRGKKVMK 118

Query: 233  GIIRNIKSLRELHSLEADDEKPTSSGVSGGAQVVDLDIPLGTGDSGGGRR----IPWVSA 400
             IIRN++ L+    LE      T  G+    +V +     G+   G  +R    +PW+  
Sbjct: 119  KIIRNVEMLQGNEVLE-----DTQIGIREEFEVGNWLEEFGS--DGEVKRFDGKMPWLRE 171

Query: 401  EVDKLVFRREKKVKEITAAELVLAPDLLFRLRGEXXXXXXXXXXXXXGVTQVVVEEIQRG 580
            E +K+VFRR KK K +T AE+ L  DLL RLR +             GVT+ VV+EI+  
Sbjct: 172  E-EKVVFRRMKKEKLLTQAEISLDKDLLERLRRKAMRMRKWIKVMKLGVTKAVVDEIKLA 230

Query: 581  WRNDELVMVRIVEPLRRNMDRAREIVETKTGGLVVWIKRDFLVIYRGEKYGMI-----LH 745
            WR +ELVMV+   PL RNMDRAREI+E KT GLVVW K+D LV+YRG  +G+      + 
Sbjct: 231  WRKNELVMVKFGVPLCRNMDRAREIIEMKTRGLVVWGKKDALVVYRGCSHGLTSKISSMK 290

Query: 746  TPSCYNAVD-------------QVNLGIFDSNRAIFS---VNSDGIMEDMENNIYLTNKN 877
             P C +  +              +N+ +   N +         D   E M  NI++  K 
Sbjct: 291  YPRCADGQEISSSTFSHLTSSNNINMSLEKFNGSTLQSGLYREDREKESMPINIFM--KE 348

Query: 878  SETQHPVEGSLYEREANRLLDGLGPRFVDWWWRTPLPVDADLLPEVVXXXXXXXXXXXXG 1057
             E   PV GSLYERE +RLLDGLGPRF+DWW R PLP+DADLLPE V             
Sbjct: 349  DENNQPVIGSLYERETDRLLDGLGPRFIDWWMRKPLPIDADLLPEEVPGFRPPLRLSPPN 408

Query: 1058 IRVKLTDDELTYLRKLARSLPTHFALGRNTKLQGLASSIIKLWKKSCXXXXXXXXXXQNT 1237
             R  LTDDEL YLRKL   LP HFALG+N  LQGLA++I+KLW+KS           QNT
Sbjct: 409  TRPNLTDDELKYLRKLTHPLPFHFALGKNRNLQGLAAAILKLWEKSLIAKIAIKWGIQNT 468

Query: 1238 NNEQMSLELKRLTGGVLILRNKFFIILYRGKDFLPDGVFNLIEEREAELDKELLVEEEAR 1417
            +NEQM+ ELK LTGGVL++RNKF +ILYRGKDFLP GV NL+ ERE  L +  L EE AR
Sbjct: 469  DNEQMAYELKNLTGGVLLVRNKFLLILYRGKDFLPQGVANLVVEREMALRRCQLNEEGAR 528

Query: 1418 VSSTNLTHTMDAISLSSNSAGTRMEFQNIQTNHVRLSIKNHRCQVQIXXXXXXXXXXXXX 1597
            V         D     +++ GT  EF++IQT    L  ++   ++Q+             
Sbjct: 529  VKVAETCQVADEPLAKTSTVGTLSEFEDIQTRFGDLKKESSELELQLEAQKENLERELRN 588

Query: 1598 XXXXXFILNQKIEXXXXXXXXXXXXWCPSDQIADQEILTEEERQAFRKIGLAMDEVILLG 1777
                  ILN KIE              P++Q  D EI+TEEER+  RKIGL ++  ++LG
Sbjct: 589  QERKLSILNIKIEKSAKELAKLKSSRQPAEQDVDLEIITEEERECLRKIGLKLNSFLVLG 648

Query: 1778 RRGIYNGVIGSIHQHWKHREVVKVITKQKAKYHVNYSARLLEVECGGILVAVEKLRTSHA 1957
            RRG++NGVI  ++QHWKHREVVKVIT Q+    V Y+A+ L  E GGILV+VEKL+  HA
Sbjct: 649  RRGVFNGVIEGVYQHWKHREVVKVITMQRVFARVIYTAKFLVAETGGILVSVEKLKEGHA 708

Query: 1958 IIIYRGKNYARPLQL-PDNILTKREALQRSIEIQRRGSLKHFSLQREKAIRKLKQRL 2125
            +IIYRGKNY RPL+L  +N+LTKREAL++SIE+QR GSLK F+ QR +AI  LK +L
Sbjct: 709  LIIYRGKNYRRPLKLMTNNLLTKREALRQSIELQRIGSLKFFAYQRRQAILDLKLKL 765


>ref|XP_006603055.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X2 [Glycine max]
            gi|571550194|ref|XP_006603056.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X3 [Glycine max]
            gi|571550197|ref|XP_006603057.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X4 [Glycine max]
          Length = 747

 Score =  530 bits (1365), Expect = e-147
 Identities = 323/724 (44%), Positives = 426/724 (58%), Gaps = 10/724 (1%)
 Frame = +2

Query: 2    ENRPPSSVPPWILADGADSLKMPTAPWMSSPLVLPRDQVLDPSSPRRSARRKHKNDGRAN 181
            ++  PS VP          +K PT PWM  PL+L   +++D S+P+    +  K++    
Sbjct: 35   QHTSPSQVP----------IKSPTPPWMKVPLLLQPHELVDLSNPKSKKFKPEKHELSDK 84

Query: 182  RDLTEKVRGGRSRYAMLGIIRNIKSLRELHSLEADDEKPTSSGVS--GGAQVVDLDIPLG 355
              + ++VRG R   AM  I+  ++ L +  +  +++ +  S  V   GG     L+I   
Sbjct: 85   ALMGKEVRGKR---AMKKIVDRVEKLHKTQN--SNETRVDSLNVENFGGY----LEILKE 135

Query: 356  TGDSGGGRRIPWVSAEVDKLVFRREKKVKEITAAELVLAPDLLFRLRGEXXXXXXXXXXX 535
              +     R+PW   E  K  F + K+ K +TAAEL L   LL RLR E           
Sbjct: 136  NEEVRSKGRMPWEKDE--KFGFVKVKREKAVTAAELTLDKALLRRLRNEAARMRTWIKVK 193

Query: 536  XXGVTQVVVEEIQRGWRNDELVMVRIVEPLRRNMDRAREIVETKTGGLVVWIKRDFLVIY 715
              GVTQ VV++I+R WR +EL M++   PL RNMDRAREIVETKTGGLVV  K+DFLV+Y
Sbjct: 194  KAGVTQDVVDQIKRTWRRNELAMIKFDIPLCRNMDRAREIVETKTGGLVVLSKKDFLVVY 253

Query: 716  RGEKYGMILH-TPSCYNAVDQVNLGIFDSNRAIFSVNSDGIMEDMEN------NIYLTNK 874
            RG  + +    +PS      ++N     +   IF V S+    +M N      +   T  
Sbjct: 254  RGCNHQLTTKGSPSLRTNHYEMNRVELATKGDIFRVESNHSSSEMLNWNADHKDSISTGI 313

Query: 875  NSETQHPVEGSLYEREANRLLDGLGPRFVDWWWRTPLPVDADLLPEVVXXXXXXXXXXXX 1054
                   V GSLYERE  RLLDGLGPRF+DWW   PLPVDADLLPE V            
Sbjct: 314  QDVNCQLVNGSLYERETERLLDGLGPRFIDWWMHKPLPVDADLLPEEVPGFQPPFRLCPP 373

Query: 1055 GIRVKLTDDELTYLRKLARSLPTHFALGRNTKLQGLASSIIKLWKKSCXXXXXXXXXXQN 1234
                KLTD ELTY RKLA+SLPTHF LGRN  L+GLAS+I+KLW+KS            N
Sbjct: 374  HSSAKLTDYELTYFRKLAQSLPTHFVLGRNKGLKGLASAILKLWEKSLIAKIAIKYGIPN 433

Query: 1235 TNNEQMSLELKRLTGGVLILRNKFFIILYRGKDFLPDGVFNLIEEREAELDKELLVEEEA 1414
            T+NE M+ ELK LTGGVL+LRNKF+I+LYRG DFLP  V +L+E+RE EL    L EE A
Sbjct: 434  TDNEMMANELKCLTGGVLLLRNKFYILLYRGNDFLPRSVASLVEKRELELKSRQLHEEVA 493

Query: 1415 RVSSTNLTHTMDAISLSSNSAGTRMEFQNIQTNHVRLSIKNHRCQVQIXXXXXXXXXXXX 1594
            R+ +      +D + L ++++GT  EF+ IQT        N    +Q+            
Sbjct: 494  RMKAIQAFSPIDEVPLDTSTSGTLTEFRKIQTKLEDTKSVNVDSNIQLEAEICRLEKELK 553

Query: 1595 XXXXXXFILNQKIEXXXXXXXXXXXXWCPSDQIADQEILTEEERQAFRKIGLAMDEVILL 1774
                  FILN+KI+            W PS+Q  D EI+T+EER+ FRKIGL M   +LL
Sbjct: 554  EEQRRAFILNKKIKRSERELSKLNAAWTPSEQDTDLEIMTDEERECFRKIGLKMQSSLLL 613

Query: 1775 GRRGIYNGVIGSIHQHWKHREVVKVITKQKAKYHVNYSARLLEVECGGILVAVEKLRTSH 1954
            GRRGI++GV+  +HQHWKHREVVKVIT QK    V  +A++LE E GGILV+V+KL+  H
Sbjct: 614  GRRGIFDGVLEGLHQHWKHREVVKVITMQKLFSQVINTAKVLETESGGILVSVDKLKEGH 673

Query: 1955 AIIIYRGKNYARP-LQLPDNILTKREALQRSIEIQRRGSLKHFSLQREKAIRKLKQRLRD 2131
            AIIIYRGKNY RP ++L  N+LTKREAL+RS+E+QR GS+K F+ QRE+AI +L+ +L D
Sbjct: 674  AIIIYRGKNYKRPSIKLAKNLLTKREALRRSLEMQRIGSMKFFAHQREQAISELEVKLAD 733

Query: 2132 LERK 2143
            L++K
Sbjct: 734  LQQK 737