BLASTX nr result

ID: Zingiber23_contig00031248 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00031248
         (295 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006287132.1| hypothetical protein CARUB_v10000304mg [Caps...    60   3e-07
gb|EOY29195.1| Translation elongation factor EF1A/initiation fac...    58   2e-06
gb|EOY29196.1| Translation elongation factor EF1A/initiation fac...    57   2e-06
ref|XP_003629886.1| Elongation factor 1-alpha [Medicago truncatu...    55   7e-06
ref|XP_002871430.1| hypothetical protein ARALYDRAFT_325603 [Arab...    55   7e-06
ref|XP_003629885.1| Elongation factor 1-alpha [Medicago truncatu...    55   7e-06
ref|XP_006382171.1| hypothetical protein POPTR_0006s29040g [Popu...    55   1e-05
ref|XP_006382170.1| hypothetical protein POPTR_0006s29040g [Popu...    55   1e-05
ref|XP_002330811.1| predicted protein [Populus trichocarpa]            55   1e-05

>ref|XP_006287132.1| hypothetical protein CARUB_v10000304mg [Capsella rubella]
           gi|482555838|gb|EOA20030.1| hypothetical protein
           CARUB_v10000304mg [Capsella rubella]
          Length = 741

 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 26/65 (40%), Positives = 43/65 (66%)
 Frame = -2

Query: 195 EHEVKVDGYDDYEDNVTSQLGKDGSKHGIWQCPICSYDNDESSFCCDICGAIYVYSSTYG 16
           ++++ +D +++ E+ V S+  ++ SK G+W+C IC+YDNDES F CDICG +       G
Sbjct: 26  DYDIDIDEHEEEEEVVVSK--EEISKQGLWRCAICTYDNDESMFVCDICGVL--RHPVAG 81

Query: 15  KQKVN 1
            Q +N
Sbjct: 82  NQSIN 86


>gb|EOY29195.1| Translation elongation factor EF1A/initiation factor IF2gamma
           family protein isoform 1 [Theobroma cacao]
          Length = 778

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 13/72 (18%)
 Frame = -2

Query: 177 DGYDDY---------EDNVTSQLGKDGSKHGIWQCPICSYDNDESSFCCDICGAI---YV 34
           D YDDY         E+NV +   ++   HG+W+C IC+YDND +   CDICG +    V
Sbjct: 15  DDYDDYDEYDYGYEVEENVETPSEEETINHGVWRCSICTYDNDATLSACDICGVLRSPLV 74

Query: 33  YSSTY-GKQKVN 1
            +STY GK+ V+
Sbjct: 75  NNSTYDGKKTVD 86


>gb|EOY29196.1| Translation elongation factor EF1A/initiation factor IF2gamma
           family protein isoform 2 [Theobroma cacao]
           gi|508781941|gb|EOY29197.1| Translation elongation
           factor EF1A/initiation factor IF2gamma family protein
           isoform 2 [Theobroma cacao]
          Length = 704

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 12/69 (17%)
 Frame = -2

Query: 177 DGYDDY---------EDNVTSQLGKDGSKHGIWQCPICSYDNDESSFCCDICGAI---YV 34
           D YDDY         E+NV +   ++   HG+W+C IC+YDND +   CDICG +    V
Sbjct: 15  DDYDDYDEYDYGYEVEENVETPSEEETINHGVWRCSICTYDNDATLSACDICGVLRSPLV 74

Query: 33  YSSTYGKQK 7
            +STY  +K
Sbjct: 75  NNSTYDGKK 83


>ref|XP_003629886.1| Elongation factor 1-alpha [Medicago truncatula]
           gi|355523908|gb|AET04362.1| Elongation factor 1-alpha
           [Medicago truncatula]
          Length = 746

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 10/56 (17%)
 Frame = -2

Query: 177 DGYDDYED----------NVTSQLGKDGSKHGIWQCPICSYDNDESSFCCDICGAI 40
           D Y+DY+D           V S   K+  K G+W C IC+YDNDES   CDICG +
Sbjct: 14  DDYEDYDDYDYDVEAENYGVESDTKKETIKPGVWSCSICTYDNDESMTSCDICGVL 69


>ref|XP_002871430.1| hypothetical protein ARALYDRAFT_325603 [Arabidopsis lyrata subsp.
           lyrata] gi|297317267|gb|EFH47689.1| hypothetical protein
           ARALYDRAFT_325603 [Arabidopsis lyrata subsp. lyrata]
          Length = 788

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 24/65 (36%), Positives = 41/65 (63%)
 Frame = -2

Query: 195 EHEVKVDGYDDYEDNVTSQLGKDGSKHGIWQCPICSYDNDESSFCCDICGAIYVYSSTYG 16
           +++  VD  +++E+   ++  ++ +K G+W+C IC+YDNDES F CDICG +       G
Sbjct: 134 DYDYDVD-IEEHEEEEAAEPKEEIAKQGLWRCAICTYDNDESMFVCDICGVL--RHPVAG 190

Query: 15  KQKVN 1
            Q +N
Sbjct: 191 NQSIN 195


>ref|XP_003629885.1| Elongation factor 1-alpha [Medicago truncatula]
           gi|355523907|gb|AET04361.1| Elongation factor 1-alpha
           [Medicago truncatula]
          Length = 704

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 10/56 (17%)
 Frame = -2

Query: 177 DGYDDYED----------NVTSQLGKDGSKHGIWQCPICSYDNDESSFCCDICGAI 40
           D Y+DY+D           V S   K+  K G+W C IC+YDNDES   CDICG +
Sbjct: 14  DDYEDYDDYDYDVEAENYGVESDTKKETIKPGVWSCSICTYDNDESMTSCDICGVL 69


>ref|XP_006382171.1| hypothetical protein POPTR_0006s29040g [Populus trichocarpa]
           gi|550337326|gb|ERP59968.1| hypothetical protein
           POPTR_0006s29040g [Populus trichocarpa]
          Length = 660

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 32/66 (48%), Positives = 35/66 (53%), Gaps = 9/66 (13%)
 Frame = -2

Query: 177 DGYDDY------EDNVTSQLGK---DGSKHGIWQCPICSYDNDESSFCCDICGAIYVYSS 25
           D YDDY      ED V +   K      K  +W CPIC+YDNDES   CDICG I   SS
Sbjct: 12  DDYDDYDYDYDVEDQVEAPEPKKKTSSDKVRVWSCPICTYDNDESMSACDICGVI--RSS 69

Query: 24  TYGKQK 7
             GK K
Sbjct: 70  VPGKLK 75


>ref|XP_006382170.1| hypothetical protein POPTR_0006s29040g [Populus trichocarpa]
           gi|550337325|gb|ERP59967.1| hypothetical protein
           POPTR_0006s29040g [Populus trichocarpa]
          Length = 671

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 32/66 (48%), Positives = 35/66 (53%), Gaps = 9/66 (13%)
 Frame = -2

Query: 177 DGYDDY------EDNVTSQLGK---DGSKHGIWQCPICSYDNDESSFCCDICGAIYVYSS 25
           D YDDY      ED V +   K      K  +W CPIC+YDNDES   CDICG I   SS
Sbjct: 12  DDYDDYDYDYDVEDQVEAPEPKKKTSSDKVRVWSCPICTYDNDESMSACDICGVI--RSS 69

Query: 24  TYGKQK 7
             GK K
Sbjct: 70  VPGKLK 75


>ref|XP_002330811.1| predicted protein [Populus trichocarpa]
          Length = 658

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 32/66 (48%), Positives = 35/66 (53%), Gaps = 9/66 (13%)
 Frame = -2

Query: 177 DGYDDY------EDNVTSQLGK---DGSKHGIWQCPICSYDNDESSFCCDICGAIYVYSS 25
           D YDDY      ED V +   K      K  +W CPIC+YDNDES   CDICG I   SS
Sbjct: 12  DDYDDYDYDYDVEDQVEAPEPKKKTSSDKVRVWSCPICTYDNDESMSACDICGVI--RSS 69

Query: 24  TYGKQK 7
             GK K
Sbjct: 70  VPGKLK 75


Top