BLASTX nr result
ID: Zingiber23_contig00030298
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00030298
(875 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006395382.1| hypothetical protein EUTSA_v10003517mg [Eutr... 78 5e-12
dbj|BAB01125.1| unnamed protein product [Arabidopsis thaliana] 77 8e-12
ref|NP_566830.1| DNA repair protein UVH3 [Arabidopsis thaliana] ... 72 2e-10
ref|XP_002875418.1| predicted protein [Arabidopsis lyrata subsp.... 72 4e-10
ref|XP_006290497.1| hypothetical protein CARUB_v10016571mg [Caps... 69 3e-09
gb|EOY02333.1| DNA-repair protein UVH3, putative isoform 1 [Theo... 66 1e-08
ref|XP_003558551.1| PREDICTED: uncharacterized protein LOC100824... 58 5e-06
ref|NP_001049313.2| Os03g0205400 [Oryza sativa Japonica Group] g... 57 7e-06
gb|EEE58541.1| hypothetical protein OsJ_09837 [Oryza sativa Japo... 57 7e-06
gb|EEC74721.1| hypothetical protein OsI_10446 [Oryza sativa Indi... 57 7e-06
gb|ABF94542.1| XPG I-region family protein, expressed [Oryza sat... 57 7e-06
ref|XP_004141182.1| PREDICTED: DNA repair protein UVH3-like [Cuc... 57 9e-06
>ref|XP_006395382.1| hypothetical protein EUTSA_v10003517mg [Eutrema salsugineum]
gi|557092021|gb|ESQ32668.1| hypothetical protein
EUTSA_v10003517mg [Eutrema salsugineum]
Length = 1480
Score = 77.8 bits (190), Expect = 5e-12
Identities = 75/270 (27%), Positives = 116/270 (42%), Gaps = 5/270 (1%)
Frame = -1
Query: 875 GRGRDSSR-RKSVLKSDSECSNNGKNNDSIADIQVGNQAEVPRAILELRRSSRLLKQVKY 699
GRGR R R+++L S+ S++ ++D + D+Q + AE + ++S+R VKY
Sbjct: 1265 GRGRGRGRGRRNILPELSDGSSDDDDDDKVVDLQAPHDAEPGSS----QKSTRSRNPVKY 1320
Query: 698 --AEDFGADENGRTSNQYSSELQ--EVAREQDRSDNDSAHRIGHSANIDKGTCSFSEDCP 531
ED DE+ S +L+ E +++ R N SA R + DCP
Sbjct: 1321 DAKEDDELDESRSNGESPSEKLEDDEFLKDEGRVGNVSAERTENETTT-------INDCP 1373
Query: 530 SREHLFSGGGFCVDENDGKDNMDQIAANQTHGSTEIHFEDRHGDASYDLKHALEEASCGE 351
S +++ GGGFC DE + D H ED D +
Sbjct: 1374 SEDYIQMGGGFCADEAEVGD---------------AHLEDNATD---------------D 1403
Query: 350 YLLSGGGFCIDENNERVVATQSAITNIRDLELAKNSEDPENIGLDNFEKDDTNKELDPQI 171
Y + GGGFC+DE+ + D EL K +E+ E+ KDD
Sbjct: 1404 YRVIGGGFCVDEDE------TCEEDDAMDAELLK-TENEEHKNKGKRGKDD--------- 1447
Query: 170 HSVLDENISLRSYGHTNSGLSAMSSLRRKR 81
+ L+EN+ + + GLSAM L+RK+
Sbjct: 1448 DASLEENVEIEIGNSSAGGLSAMPFLKRKK 1477
>dbj|BAB01125.1| unnamed protein product [Arabidopsis thaliana]
Length = 1522
Score = 77.0 bits (188), Expect = 8e-12
Identities = 76/270 (28%), Positives = 117/270 (43%), Gaps = 5/270 (1%)
Frame = -1
Query: 875 GRGRDSSR---RKSVLKSDSECSNNGKNNDSIADIQVGNQAEVPRAILELRRSSRLLKQV 705
GRGR R R V K E S+ ++D D V +A+ P + ++R+S+R V
Sbjct: 1309 GRGRAQKRGRGRGRVQKDLLELSDGSSDDDDDDDKVVELEAK-PANLQKVRKSTRSRNPV 1367
Query: 704 KYA--EDFGADENGRTSNQYSSELQEVAREQDRSDNDSAHRIGHSANIDKGTCSFSEDCP 531
Y+ ED DE+ S +EV RIG+ ++D DCP
Sbjct: 1368 MYSAKEDDELDESRSNEGSPSENFEEV----------DEGRIGNDDSVDASI----NDCP 1413
Query: 530 SREHLFSGGGFCVDENDGKDNMDQIAANQTHGSTEIHFEDRHGDASYDLKHALEEASCGE 351
S +++ +GGGFC DE D GDA LE+ + +
Sbjct: 1414 SEDYIQTGGGFCADE-----------------------ADEIGDAH------LEDKATDD 1444
Query: 350 YLLSGGGFCIDENNERVVATQSAITNIRDLELAKNSEDPENIGLDNFEKDDTNKELDPQI 171
Y + GGGFC+DE+ ++A N D +D E + +++ E+ K + +
Sbjct: 1445 YRVIGGGFCVDED-------ETAEENTMD-------DDAEILKMESEEQRKKGKRRNEED 1490
Query: 170 HSVLDENISLRSYGHTNSGLSAMSSLRRKR 81
S LDEN+ + + GLSAM L+RK+
Sbjct: 1491 AS-LDENVDIHFGNSSAGGLSAMPFLKRKK 1519
>ref|NP_566830.1| DNA repair protein UVH3 [Arabidopsis thaliana]
gi|56749787|sp|Q9ATY5.1|UVH3_ARATH RecName: Full=DNA
repair protein UVH3; AltName: Full=ERCC5 homolog;
AltName: Full=RAD2 homolog; Short=AtRAD2; Short=AtUVH3;
Short=AtXPG; AltName: Full=UV hypersensitive protein 3;
AltName: Full=XPG homolog gi|13649704|gb|AAK37472.1| UV
hypersensitive protein [Arabidopsis thaliana]
gi|332643872|gb|AEE77393.1| DNA repair protein UVH3
[Arabidopsis thaliana]
Length = 1479
Score = 72.4 bits (176), Expect = 2e-10
Identities = 75/270 (27%), Positives = 114/270 (42%), Gaps = 5/270 (1%)
Frame = -1
Query: 875 GRGRDSSR---RKSVLKSDSECSNNGKNNDSIADIQVGNQAEVPRAILELRRSSRLLKQV 705
GRGR R R V K E S+ ++D D V +A+ L++S+R V
Sbjct: 1269 GRGRAQKRGRGRGRVQKDLLELSDGSSDDDDDDDKVVELEAKPAN----LQKSTRSRNPV 1324
Query: 704 KYA--EDFGADENGRTSNQYSSELQEVAREQDRSDNDSAHRIGHSANIDKGTCSFSEDCP 531
Y+ ED DE+ S +EV RIG+ ++D DCP
Sbjct: 1325 MYSAKEDDELDESRSNEGSPSENFEEV----------DEGRIGNDDSVDASI----NDCP 1370
Query: 530 SREHLFSGGGFCVDENDGKDNMDQIAANQTHGSTEIHFEDRHGDASYDLKHALEEASCGE 351
S +++ +GGGFC DE D GDA LE+ + +
Sbjct: 1371 SEDYIQTGGGFCADE-----------------------ADEIGDAH------LEDKATDD 1401
Query: 350 YLLSGGGFCIDENNERVVATQSAITNIRDLELAKNSEDPENIGLDNFEKDDTNKELDPQI 171
Y + GGGFC+DE+ ++A N D +D E + +++ E+ K + +
Sbjct: 1402 YRVIGGGFCVDED-------ETAEENTMD-------DDAEILKMESEEQRKKGKRRNEED 1447
Query: 170 HSVLDENISLRSYGHTNSGLSAMSSLRRKR 81
S LDEN+ + + GLSAM L+RK+
Sbjct: 1448 AS-LDENVDIHFGNSSAGGLSAMPFLKRKK 1476
>ref|XP_002875418.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321256|gb|EFH51677.1| predicted protein
[Arabidopsis lyrata subsp. lyrata]
Length = 1463
Score = 71.6 bits (174), Expect = 4e-10
Identities = 69/267 (25%), Positives = 114/267 (42%), Gaps = 2/267 (0%)
Frame = -1
Query: 875 GRGRDSSRRKSVLKSDSECSNNGKNNDSIADIQVGNQAEVPRAILELRRSSRLLKQVKY- 699
GRGR R + ++ D ++G ++D D++ L++S+R VKY
Sbjct: 1257 GRGRAQKRGRGRVQKDLLELSDGTSDDDDKDLEAKPS--------NLQKSTRSRNPVKYN 1308
Query: 698 -AEDFGADENGRTSNQYSSELQEVAREQDRSDNDSAHRIGHSANIDKGTCSFSEDCPSRE 522
ED DE+ S +EV ++ R N S R A+I+ DCPS +
Sbjct: 1309 AKEDDELDESRSNGESLSEHFEEV--DEGRIGNVSEERTQKEASIN--------DCPSED 1358
Query: 521 HLFSGGGFCVDENDGKDNMDQIAANQTHGSTEIHFEDRHGDASYDLKHALEEASCGEYLL 342
++ +GGGFC E D GDA L++ + +Y +
Sbjct: 1359 YIQTGGGFCAGE-----------------------ADEIGDAH------LKDKATDDYRV 1389
Query: 341 SGGGFCIDENNERVVATQSAITNIRDLELAKNSEDPENIGLDNFEKDDTNKELDPQIHSV 162
GGGFC+DE+ A + A ++D E + +++ E+ K + + S
Sbjct: 1390 IGGGFCVDEDE---TAEEDA------------TDDAEMLKMESEERRKKGKRRNEEDAS- 1433
Query: 161 LDENISLRSYGHTNSGLSAMSSLRRKR 81
L+EN+ + + GLSAM L+RK+
Sbjct: 1434 LEENVEIGFGNSSTEGLSAMPFLKRKK 1460
>ref|XP_006290497.1| hypothetical protein CARUB_v10016571mg [Capsella rubella]
gi|482559204|gb|EOA23395.1| hypothetical protein
CARUB_v10016571mg [Capsella rubella]
Length = 1488
Score = 68.6 bits (166), Expect = 3e-09
Identities = 76/272 (27%), Positives = 114/272 (41%), Gaps = 7/272 (2%)
Frame = -1
Query: 875 GRGRDSSR-----RKSVLKSDSECSNNGKNNDSIADIQVGNQAEVPRAILELRRSSRLLK 711
GRGR R R V K E S+ ++D D V QA+ P + ++RRS+R
Sbjct: 1274 GRGRAQKRVRGRGRGRVQKDLLELSDGTSDDD---DKVVELQAK-PSNLQKVRRSTRSRN 1329
Query: 710 QVKYAEDFGADENGRTSNQYSSELQEVAREQDRSD--NDSAHRIGHSANIDKGTCSFSED 537
VKY + ++ S + E+ + D S N SA R + ID+ + + +
Sbjct: 1330 PVKY--NVKEEDELNESRSHGESPIEILEDNDESGIGNVSAERTQNETTIDEASIN---N 1384
Query: 536 CPSREHLFSGGGFCVDENDGKDNMDQIAANQTHGSTEIHFEDRHGDASYDLKHALEEASC 357
CPS +++ +GGGFC DE D GDA LE+ S
Sbjct: 1385 CPSEDYIQTGGGFCTDE-----------------------ADEIGDAH------LEDKST 1415
Query: 356 GEYLLSGGGFCIDENNERVVATQSAITNIRDLELAKNSEDPENIGLDNFEKDDTNKELDP 177
+Y + GGGFC+DE+ A + I + + K + +N + +TN E+D
Sbjct: 1416 DDYRVIGGGFCVDEDE---TAEEDEIESEERKKKGKRRNEEDNASV------ETNIEIDF 1466
Query: 176 QIHSVLDENISLRSYGHTNSGLSAMSSLRRKR 81
SV GLSAM L+RK+
Sbjct: 1467 GNSSV-------------GGGLSAMPFLKRKK 1485
>gb|EOY02333.1| DNA-repair protein UVH3, putative isoform 1 [Theobroma cacao]
Length = 1670
Score = 66.2 bits (160), Expect = 1e-08
Identities = 80/301 (26%), Positives = 126/301 (41%), Gaps = 34/301 (11%)
Frame = -1
Query: 872 RGRDSSRRKSVLKSD---SECSNNGKNNDSIADIQVGNQAEVPRAILELRRSSRLLKQVK 702
+G + RR+ D SE S++G N+ + G + + P+ ++RRS R V
Sbjct: 1409 KGHGARRRRRKASPDFEQSETSSSGGNSGNDYQEVDGEKLDRPQ---QVRRSMRTRNPVN 1465
Query: 701 YAEDFGADENGRTSNQYSSELQEVAREQDRSDNDSAHRIGHSANIDKGTCSFSEDCPSRE 522
Y + DE G ++ + S E A EQ+ +D+ + + + +F ED SR+
Sbjct: 1466 YNVNDLEDEVGLSNKESSCE---EAMEQEAADDLNEENPSEARDP-----TFEEDF-SRD 1516
Query: 521 HLFSGGGFCVDENDGKDNMDQIAANQTHGSTEIHFEDRHGDASYDLKHALEEASCGEYLL 342
+L GGGFC+DE E H D S + E + +YL
Sbjct: 1517 YLERGGGFCMDEK----------------------EVGHPDESQGVDPTPEAEASKDYLK 1554
Query: 341 SGGGFCIDEN-----------NERVVATQS----AITNIRD--LELAKNSEDPE------ 231
GGGFCIDEN + V AT S A T+ D A+ S P+
Sbjct: 1555 MGGGFCIDENETSKDPDAACDQDPVAATDSSNGVAFTDKADDNAASAEPSSSPKRSLDGL 1614
Query: 230 --------NIGLDNFEKDDTNKELDPQIHSVLDENISLRSYGHTNSGLSAMSSLRRKRWR 75
N+G N +D +K P + +++ ++ GLSAM +L+RKR +
Sbjct: 1615 QNASFTELNLGHQNAANEDDSKGSAPPQETTVNDTVTA-----FVGGLSAMPTLKRKRRK 1669
Query: 74 K 72
+
Sbjct: 1670 R 1670
>ref|XP_003558551.1| PREDICTED: uncharacterized protein LOC100824635 [Brachypodium
distachyon]
Length = 1460
Score = 57.8 bits (138), Expect = 5e-06
Identities = 55/192 (28%), Positives = 82/192 (42%), Gaps = 28/192 (14%)
Frame = -1
Query: 875 GRGR---DSSRRKSVLKSDSECSNNGKNNDSIADIQVGNQAEVPRAILELRRSSRLLKQV 705
GRGR ++ +V + DSE + ++D D + LRRS+R KQV
Sbjct: 1237 GRGRKRTNAGHETAVSQEDSEVKTSTFSSD--VDTHKSHAGNYKSEGTALRRSNRKRKQV 1294
Query: 704 KYAED-----------FGADEN----------GRT--SNQYSSELQEVAREQDRSDNDSA 594
Y ED + ADEN GR SN + + E+ R+Q +D +A
Sbjct: 1295 TYMEDGHEADDNDTPVYQADENDPSPAASDIAGRDTQSNMFHQDTSELNRDQIHADPGTA 1354
Query: 593 HRIGHSANIDKGTCSFSEDCPSREHLFSGGGFCVDENDGKDNMDQIAANQTHGSTEIHFE 414
+ D C D +E+LF+GGGFC++E++ +D + T FE
Sbjct: 1355 VDMSE----DFEFCEDQTDSAPKEYLFTGGGFCMEEDEEQDAPGDRPGAEIKDGTSDAFE 1410
Query: 413 DRHG--DASYDL 384
D G D+ DL
Sbjct: 1411 DIGGVSDSGIDL 1422
>ref|NP_001049313.2| Os03g0205400 [Oryza sativa Japonica Group]
gi|255674294|dbj|BAF11227.2| Os03g0205400 [Oryza sativa
Japonica Group]
Length = 1470
Score = 57.4 bits (137), Expect = 7e-06
Identities = 51/174 (29%), Positives = 75/174 (43%), Gaps = 28/174 (16%)
Frame = -1
Query: 875 GRGRDSSRRKSVL---KSDSECSNNGKNNDSIADIQVGNQAEVPRAILELRRSSRLLKQV 705
G+GR S V+ DS+ SN + DS + + + L LRRS+R KQV
Sbjct: 1236 GKGRRSMNAAHVIIGNGEDSDVSNLASDEDS----HIRHTNDYESEGLTLRRSNRKRKQV 1291
Query: 704 KYAEDFG-ADENGRTSNQYSSELQEVAREQDRS-------------------DNDSAHRI 585
YAED AD+N + +Q + + E+D + D H
Sbjct: 1292 TYAEDGQEADDNDVSIHQIDENQGQGSLEEDMCHMAGLDTQSNLLHQDTSELNIDQTHTD 1351
Query: 584 GHSANIDKGTCSFSEDCPS----REHLFSGGGFCVDENDGKD-NMDQIAANQTH 438
N D EDC + +++LF+GGGFC++E D +D +DQ A H
Sbjct: 1352 PSDMNEDPSGFELPEDCHTDTAPKDYLFTGGGFCMEEGDEQDTGVDQSGAEMEH 1405
>gb|EEE58541.1| hypothetical protein OsJ_09837 [Oryza sativa Japonica Group]
Length = 1494
Score = 57.4 bits (137), Expect = 7e-06
Identities = 51/174 (29%), Positives = 75/174 (43%), Gaps = 28/174 (16%)
Frame = -1
Query: 875 GRGRDSSRRKSVL---KSDSECSNNGKNNDSIADIQVGNQAEVPRAILELRRSSRLLKQV 705
G+GR S V+ DS+ SN + DS + + + L LRRS+R KQV
Sbjct: 1260 GKGRRSMNAAHVIIGNGEDSDVSNLASDEDS----HIRHTNDYESEGLTLRRSNRKRKQV 1315
Query: 704 KYAEDFG-ADENGRTSNQYSSELQEVAREQDRS-------------------DNDSAHRI 585
YAED AD+N + +Q + + E+D + D H
Sbjct: 1316 TYAEDGQEADDNDVSIHQIDENQGQGSLEEDMCHMAGLDTQSNLLHQDTSELNIDQTHTD 1375
Query: 584 GHSANIDKGTCSFSEDCPS----REHLFSGGGFCVDENDGKD-NMDQIAANQTH 438
N D EDC + +++LF+GGGFC++E D +D +DQ A H
Sbjct: 1376 PSDMNEDPSGFELPEDCHTDTAPKDYLFTGGGFCMEEGDEQDTGVDQSGAEMEH 1429
>gb|EEC74721.1| hypothetical protein OsI_10446 [Oryza sativa Indica Group]
Length = 1487
Score = 57.4 bits (137), Expect = 7e-06
Identities = 51/174 (29%), Positives = 75/174 (43%), Gaps = 28/174 (16%)
Frame = -1
Query: 875 GRGRDSSRRKSVL---KSDSECSNNGKNNDSIADIQVGNQAEVPRAILELRRSSRLLKQV 705
G+GR S V+ DS+ SN + DS + + + L LRRS+R KQV
Sbjct: 1253 GKGRRSMNAAHVIIGNGEDSDVSNLASDEDS----HIRHTNDYESEGLTLRRSNRKRKQV 1308
Query: 704 KYAEDFG-ADENGRTSNQYSSELQEVAREQDRS-------------------DNDSAHRI 585
YAED AD+N + +Q + + E+D + D H
Sbjct: 1309 TYAEDGQEADDNDVSIHQIDENQGQGSLEEDMCHMAGLDTQSNLLHQDTSELNIDQTHTD 1368
Query: 584 GHSANIDKGTCSFSEDCPS----REHLFSGGGFCVDENDGKD-NMDQIAANQTH 438
N D EDC + +++LF+GGGFC++E D +D +DQ A H
Sbjct: 1369 PSDMNEDPSGFELPEDCHTDTAPKDYLFTGGGFCMEEGDEQDTGVDQSGAEMEH 1422
>gb|ABF94542.1| XPG I-region family protein, expressed [Oryza sativa Japonica Group]
Length = 1477
Score = 57.4 bits (137), Expect = 7e-06
Identities = 51/174 (29%), Positives = 75/174 (43%), Gaps = 28/174 (16%)
Frame = -1
Query: 875 GRGRDSSRRKSVL---KSDSECSNNGKNNDSIADIQVGNQAEVPRAILELRRSSRLLKQV 705
G+GR S V+ DS+ SN + DS + + + L LRRS+R KQV
Sbjct: 1243 GKGRRSMNAAHVIIGNGEDSDVSNLASDEDS----HIRHTNDYESEGLTLRRSNRKRKQV 1298
Query: 704 KYAEDFG-ADENGRTSNQYSSELQEVAREQDRS-------------------DNDSAHRI 585
YAED AD+N + +Q + + E+D + D H
Sbjct: 1299 TYAEDGQEADDNDVSIHQIDENQGQGSLEEDMCHMAGLDTQSNLLHQDTSELNIDQTHTD 1358
Query: 584 GHSANIDKGTCSFSEDCPS----REHLFSGGGFCVDENDGKD-NMDQIAANQTH 438
N D EDC + +++LF+GGGFC++E D +D +DQ A H
Sbjct: 1359 PSDMNEDPSGFELPEDCHTDTAPKDYLFTGGGFCMEEGDEQDTGVDQSGAEMEH 1412
>ref|XP_004141182.1| PREDICTED: DNA repair protein UVH3-like [Cucumis sativus]
gi|449489542|ref|XP_004158342.1| PREDICTED: DNA repair
protein UVH3-like [Cucumis sativus]
Length = 1541
Score = 57.0 bits (136), Expect = 9e-06
Identities = 74/292 (25%), Positives = 130/292 (44%), Gaps = 27/292 (9%)
Frame = -1
Query: 875 GRGRDSSRRKSVLKSDSECSNNGKNNDSIADIQVGNQAEVPRAILELRRSSRLLKQVKYA 696
GRGR +SR K+ + +E S++ ++D D Q + + E RRSSR+ K YA
Sbjct: 1278 GRGRLASRGKTPMTDLAETSSS--DDDGEFDNQKFDLENLQEP-QERRRSSRIRKSASYA 1334
Query: 695 EDFGADENGRTSNQYSSELQEVAREQDRSDNDSAHR--IGHSANIDKGTCSFSEDCPSRE 522
D + +++++S++ +V ++ D + + I S N + + + + + +
Sbjct: 1335 IDDADQPSDHSADRFSND--KVEKDVVVQDQYTYPKTIISQSQNTESSSRTPKQSLQN-D 1391
Query: 521 HLFSGGGFCVDENDGKDNMDQIAANQTHGSTEIHFEDRHGDASYDLKHALEEASCGEYLL 342
+L +GGGFC+ E++ + ++ N+ A+E + +YL
Sbjct: 1392 YLETGGGFCLVEDE--KSRQEMCQNKDS--------------------AMEANNSEDYLT 1429
Query: 341 SGGGFCIDENNERV--VATQSAITNIRDLELAKNSEDPENI---GLDNFEKDDTNKELDP 177
GGGFC+D+N+E V VA T LE K+ + + I + E+ K+ D
Sbjct: 1430 IGGGFCLDDNDECVDPVAHSDQAT---ILEAQKDDFENDLIPDQSTFSTEEHIVEKDTDA 1486
Query: 176 QIHSV--------------------LDENISLRSYGHTNSGLSAMSSLRRKR 81
+I S+ ++E RS GLSAM +LRRKR
Sbjct: 1487 RIESLHGLGNSNPVSNRNSSQVGENVEEEPKDRSVRALGGGLSAMPNLRRKR 1538