BLASTX nr result
ID: Zingiber23_contig00030171
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00030171
(227 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymer... 58 2e-06
ref|XP_006844103.1| hypothetical protein AMTR_s00006p00254180 [A... 58 2e-06
ref|XP_004956403.1| PREDICTED: DNA-directed RNA polymerase 1B, m... 58 2e-06
sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymeras... 58 2e-06
emb|CBL87031.1| RNA polymerase [Nuphar advena] 57 3e-06
emb|CBI27412.3| unnamed protein product [Vitis vinifera] 56 4e-06
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi... 56 4e-06
ref|XP_006660444.1| PREDICTED: DNA-directed RNA polymerase 1B, m... 56 6e-06
ref|XP_006660443.1| PREDICTED: DNA-directed RNA polymerase 1B, m... 56 6e-06
dbj|BAD23376.1| putative phage-type RNA polymerase [Oryza sativa... 56 6e-06
ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group] g... 56 6e-06
sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymeras... 56 6e-06
gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japo... 56 6e-06
emb|CAC95024.1| mitochondrial and plastid RNA polymerase [Nicoti... 56 6e-06
emb|CBL69149.1| RNA polymerase [Nuphar advena] 55 8e-06
ref|XP_003577161.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 55 1e-05
>dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris] gi|17221595|dbj|BAB78465.1| T7
bacteriophage-type single subunit RNA polymerase
[Nicotiana sylvestris]
Length = 1020
Score = 57.8 bits (138), Expect = 2e-06
Identities = 31/58 (53%), Positives = 37/58 (63%)
Frame = -1
Query: 176 GDTVTKDQQFXXXXXXXXXXXXXLRQVAQIVKDQDDSKPWGLDMHAKVGSRLIDLLLE 3
G+ VT++Q+ LR V QIV+ QDDSKPWG D AKVGSRLIDLLL+
Sbjct: 327 GEHVTQEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQ 384
>ref|XP_006844103.1| hypothetical protein AMTR_s00006p00254180 [Amborella trichopoda]
gi|548846502|gb|ERN05778.1| hypothetical protein
AMTR_s00006p00254180 [Amborella trichopoda]
Length = 1006
Score = 57.8 bits (138), Expect = 2e-06
Identities = 25/33 (75%), Positives = 31/33 (93%)
Frame = -1
Query: 101 QVAQIVKDQDDSKPWGLDMHAKVGSRLIDLLLE 3
QV +IVK QDD+KPWG+D+HAKVGSRLI+LL+E
Sbjct: 338 QVRKIVKGQDDAKPWGIDIHAKVGSRLIELLIE 370
>ref|XP_004956403.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
[Setaria italica]
Length = 1005
Score = 57.8 bits (138), Expect = 2e-06
Identities = 29/55 (52%), Positives = 36/55 (65%)
Frame = -1
Query: 167 VTKDQQFXXXXXXXXXXXXXLRQVAQIVKDQDDSKPWGLDMHAKVGSRLIDLLLE 3
+ K+QQ LRQV +IVK+QDDS+PWG D HAKVGSRLI+L +E
Sbjct: 315 IAKEQQRLRKKVTDLMKKQKLRQVRKIVKNQDDSRPWGQDAHAKVGSRLIELFIE 369
>sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
AltName: Full=T7 bacteriophage-type single subunit RNA
polymerase 2; Flags: Precursor
gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
[Nicotiana sylvestris]
Length = 1020
Score = 57.8 bits (138), Expect = 2e-06
Identities = 31/58 (53%), Positives = 37/58 (63%)
Frame = -1
Query: 176 GDTVTKDQQFXXXXXXXXXXXXXLRQVAQIVKDQDDSKPWGLDMHAKVGSRLIDLLLE 3
G+ VT++Q+ LR V QIV+ QDDSKPWG D AKVGSRLIDLLL+
Sbjct: 327 GEHVTQEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQ 384
>emb|CBL87031.1| RNA polymerase [Nuphar advena]
Length = 990
Score = 57.0 bits (136), Expect = 3e-06
Identities = 27/57 (47%), Positives = 38/57 (66%)
Frame = -1
Query: 173 DTVTKDQQFXXXXXXXXXXXXXLRQVAQIVKDQDDSKPWGLDMHAKVGSRLIDLLLE 3
+TVTK+++F LRQV ++VK +DDS PWG++ HAKVG LI+LL+E
Sbjct: 305 ETVTKEKEFLRKKVTNLIKKQKLRQVTKLVKGKDDSAPWGVEAHAKVGCHLIELLIE 361
>emb|CBI27412.3| unnamed protein product [Vitis vinifera]
Length = 810
Score = 56.2 bits (134), Expect = 4e-06
Identities = 30/55 (54%), Positives = 36/55 (65%)
Frame = -1
Query: 167 VTKDQQFXXXXXXXXXXXXXLRQVAQIVKDQDDSKPWGLDMHAKVGSRLIDLLLE 3
VTK+Q+ L+QV QIVK QDDSKPWG D + KVGSRLI+LL+E
Sbjct: 120 VTKEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIE 174
>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
vinifera]
Length = 978
Score = 56.2 bits (134), Expect = 4e-06
Identities = 30/55 (54%), Positives = 36/55 (65%)
Frame = -1
Query: 167 VTKDQQFXXXXXXXXXXXXXLRQVAQIVKDQDDSKPWGLDMHAKVGSRLIDLLLE 3
VTK+Q+ L+QV QIVK QDDSKPWG D + KVGSRLI+LL+E
Sbjct: 288 VTKEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIE 342
>ref|XP_006660444.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
isoform X2 [Oryza brachyantha]
Length = 839
Score = 55.8 bits (133), Expect = 6e-06
Identities = 25/34 (73%), Positives = 30/34 (88%)
Frame = -1
Query: 104 RQVAQIVKDQDDSKPWGLDMHAKVGSRLIDLLLE 3
RQV IVK QD+SKPWG D+HAKVGSRLI+L++E
Sbjct: 170 RQVRYIVKKQDNSKPWGQDVHAKVGSRLIELMIE 203
>ref|XP_006660443.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
isoform X1 [Oryza brachyantha]
Length = 703
Score = 55.8 bits (133), Expect = 6e-06
Identities = 25/34 (73%), Positives = 30/34 (88%)
Frame = -1
Query: 104 RQVAQIVKDQDDSKPWGLDMHAKVGSRLIDLLLE 3
RQV IVK QD+SKPWG D+HAKVGSRLI+L++E
Sbjct: 143 RQVRYIVKKQDNSKPWGQDVHAKVGSRLIELMIE 176
>dbj|BAD23376.1| putative phage-type RNA polymerase [Oryza sativa Japonica Group]
gi|48716846|dbj|BAD23544.1| putative phage-type RNA
polymerase [Oryza sativa Japonica Group]
gi|215694941|dbj|BAG90132.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 951
Score = 55.8 bits (133), Expect = 6e-06
Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Frame = -1
Query: 176 GDT-VTKDQQFXXXXXXXXXXXXXLRQVAQIVKDQDDSKPWGLDMHAKVGSRLIDLLLE 3
GD+ + K+Q+ +RQV IVK QD+SKPWG D HAKVGSRLI+L++E
Sbjct: 323 GDSDIAKEQERLRKKVTDLMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIE 381
>ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group]
gi|30698494|dbj|BAC76604.1| RpoT1 [Oryza sativa Japonica
Group] gi|37360973|dbj|BAC98395.1| T7 bacteriophage-type
single subunit RNA polymerase [Oryza sativa Japonica
Group] gi|113630892|dbj|BAF24573.1| Os09g0246200 [Oryza
sativa Japonica Group]
Length = 1017
Score = 55.8 bits (133), Expect = 6e-06
Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Frame = -1
Query: 176 GDT-VTKDQQFXXXXXXXXXXXXXLRQVAQIVKDQDDSKPWGLDMHAKVGSRLIDLLLE 3
GD+ + K+Q+ +RQV IVK QD+SKPWG D HAKVGSRLI+L++E
Sbjct: 323 GDSDIAKEQERLRKKVTDLMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIE 381
>sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial; AltName:
Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
single subunit RNA polymerase 2B; Flags: Precursor
gi|21425665|emb|CAC95020.1| mitochondrial and
chloroplast RNA polymerase [Nicotiana tabacum]
Length = 1021
Score = 55.8 bits (133), Expect = 6e-06
Identities = 30/58 (51%), Positives = 37/58 (63%)
Frame = -1
Query: 176 GDTVTKDQQFXXXXXXXXXXXXXLRQVAQIVKDQDDSKPWGLDMHAKVGSRLIDLLLE 3
G+ VT++Q+ LR V QIV+ QDDSKPWG D AKVGSRLI+LLL+
Sbjct: 328 GEHVTQEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDAKAKVGSRLIELLLQ 385
>gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japonica Group]
Length = 983
Score = 55.8 bits (133), Expect = 6e-06
Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Frame = -1
Query: 176 GDT-VTKDQQFXXXXXXXXXXXXXLRQVAQIVKDQDDSKPWGLDMHAKVGSRLIDLLLE 3
GD+ + K+Q+ +RQV IVK QD+SKPWG D HAKVGSRLI+L++E
Sbjct: 289 GDSDIAKEQERLRKKVTDLMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIE 347
>emb|CAC95024.1| mitochondrial and plastid RNA polymerase [Nicotiana tabacum]
Length = 562
Score = 55.8 bits (133), Expect = 6e-06
Identities = 30/58 (51%), Positives = 37/58 (63%)
Frame = -1
Query: 176 GDTVTKDQQFXXXXXXXXXXXXXLRQVAQIVKDQDDSKPWGLDMHAKVGSRLIDLLLE 3
G+ VT++Q+ LR V QIV+ QDDSKPWG D AKVGSRLI+LLL+
Sbjct: 24 GEHVTQEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDAKAKVGSRLIELLLQ 81
>emb|CBL69149.1| RNA polymerase [Nuphar advena]
Length = 996
Score = 55.5 bits (132), Expect = 8e-06
Identities = 27/57 (47%), Positives = 38/57 (66%)
Frame = -1
Query: 173 DTVTKDQQFXXXXXXXXXXXXXLRQVAQIVKDQDDSKPWGLDMHAKVGSRLIDLLLE 3
+ VTK+++F LRQV +IVK +DDS+PWG + HAKVG RLI+LL++
Sbjct: 307 EAVTKEKEFLRKKVTSLIKKQKLRQVTKIVKGKDDSEPWGTEGHAKVGCRLIELLMK 363
>ref|XP_003577161.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like [Brachypodium
distachyon]
Length = 992
Score = 55.1 bits (131), Expect = 1e-05
Identities = 29/59 (49%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Frame = -1
Query: 176 GDT-VTKDQQFXXXXXXXXXXXXXLRQVAQIVKDQDDSKPWGLDMHAKVGSRLIDLLLE 3
GD+ + K+QQ +RQV IVK QD ++PWG D HAKVGSRLI+LL+E
Sbjct: 298 GDSDIAKEQQRLRKKVTDLMKKQKIRQVRNIVKKQDSTRPWGQDAHAKVGSRLIELLIE 356