BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00028731
         (3289 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274267.1| PREDICTED: DNA topoisomerase 2-like [Vitis v...  1288   0.0  
gb|EOY18138.1| DNA topoisomerase 2 isoform 2 [Theobroma cacao]       1276   0.0  
gb|EOY18137.1| DNA topoisomerase 2 isoform 1 [Theobroma cacao]       1275   0.0  
ref|XP_006838283.1| hypothetical protein AMTR_s00103p00101630 [A...  1246   0.0  
emb|CBI24922.3| unnamed protein product [Vitis vinifera]             1232   0.0  
gb|EOY18139.1| Topoisomerase II isoform 3 [Theobroma cacao]          1216   0.0  
ref|XP_006647737.1| PREDICTED: DNA topoisomerase 2-like [Oryza b...  1208   0.0  
ref|XP_006345427.1| PREDICTED: DNA topoisomerase 2-like [Solanum...  1208   0.0  
gb|AAN85207.1| DNA topoisomerase II [Nicotiana tabacum] gi|26984...  1205   0.0  
ref|XP_004229644.1| PREDICTED: DNA topoisomerase 2-like [Solanum...  1203   0.0  
ref|XP_006482851.1| PREDICTED: DNA topoisomerase 2-like [Citrus ...  1198   0.0  
ref|XP_006439079.1| hypothetical protein CICLE_v10030505mg [Citr...  1198   0.0  
ref|XP_006439078.1| hypothetical protein CICLE_v10030505mg [Citr...  1194   0.0  
ref|XP_004308680.1| PREDICTED: DNA topoisomerase 2-like [Fragari...  1191   0.0  
ref|XP_002314046.2| DNA topoisomerase family protein [Populus tr...  1190   0.0  
dbj|BAD07880.1| putative DNA topoisomerase II [Oryza sativa Japo...  1189   0.0  
ref|XP_002298421.2| DNA topoisomerase family protein [Populus tr...  1185   0.0  
gb|EMJ21781.1| hypothetical protein PRUPE_ppa000202mg [Prunus pe...  1183   0.0  
ref|XP_004953539.1| PREDICTED: DNA topoisomerase 2-like [Setaria...  1157   0.0  
ref|XP_003570162.1| PREDICTED: DNA topoisomerase 2-like [Brachyp...  1157   0.0  

>ref|XP_002274267.1| PREDICTED: DNA topoisomerase 2-like [Vitis vinifera]
          Length = 1489

 Score = 1288 bits (3334), Expect = 0.0
 Identities = 678/1099 (61%), Positives = 799/1099 (72%), Gaps = 63/1099 (5%)
 Frame = +2

Query: 2    LTTRQGSLGSKCELSQDFLKKVAKSGVVNTLLTWADFKQSKELKKTDGAKRQRITGIPKL 181
            LT RQ S GSKCELSQ+FLKKV+KSGVV +LL+WAD+KQ+K+LKKTDG KRQR+TGI KL
Sbjct: 377  LTIRQSSFGSKCELSQEFLKKVSKSGVVESLLSWADYKQNKDLKKTDGTKRQRLTGITKL 436

Query: 182  EDANDAGGRNSDKCTLILTEGDSAKALAMSGISVVGRNYYGVFPLRGKLLNVREANHKQI 361
            EDANDAGGRNS+KCTLILTEGDSAKALAM+GISVVGRN+YGVFPLRGKLLNVR+A  KQI
Sbjct: 437  EDANDAGGRNSEKCTLILTEGDSAKALAMAGISVVGRNHYGVFPLRGKLLNVRDAQKKQI 496

Query: 362  MDNAEIQNIKQILGLQHGKEYDSAKGLRYGHLMIMTDQDHDGSHIKGLLINFIHTFWPSL 541
            ++NAEIQNIKQILGLQ GKEYDS K LRYGHLMIMTDQDHDGSHIKGLLINFIH+FWPSL
Sbjct: 497  LENAEIQNIKQILGLQQGKEYDSIKSLRYGHLMIMTDQDHDGSHIKGLLINFIHSFWPSL 556

Query: 542  LKVPSFMVEFITPLLKATNNRTKTVLSFYSMPEFEAWKESLGGNSNGWSIKYYKGLGTSK 721
            LK+PSF+VEFITP++KAT+ R   VLSFYSMPE+E+WKESLGGN++GWSIKYYKGLGTS 
Sbjct: 557  LKIPSFLVEFITPIVKATH-RNGRVLSFYSMPEYESWKESLGGNASGWSIKYYKGLGTST 615

Query: 722  SEEGKEYFRNIGMHKKEFVWMDAQDGESIELAFSKKKIEARKNWLRQFEPENYLDQSETL 901
            S+EGKEYF+++G HKK+F+W+D +DG++IELAFSKKKIE RKNWLRQF+P  YLDQ E L
Sbjct: 616  SKEGKEYFKDLGKHKKDFMWVDEKDGDAIELAFSKKKIEERKNWLRQFQPGTYLDQKEKL 675

Query: 902  IKYSDFINKELILFSRADLQRSIPSMVDGLKPGQRKILFCAFKRNFVKQAKVAQFIGYVS 1081
            IKYSDF+NKELILFS ADLQRSIPSMVDGLKPGQRKILFC+FKRNF+K+AK+AQF GYVS
Sbjct: 676  IKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKIAQFSGYVS 735

Query: 1082 ENSAYHHGEQSLATTIIAMAQDFVGSNNINLLQPEGQFGTRHQGGKDHASARYIFTCLAP 1261
            E+SAYHHGEQSLA+TII MAQDFVGSNNINLL P GQFGTRHQGGKDHASARYI+T L+P
Sbjct: 736  EHSAYHHGEQSLASTIIGMAQDFVGSNNINLLLPNGQFGTRHQGGKDHASARYIYTRLSP 795

Query: 1262 ITRFLFPKDDDILLDYLNEDGQSIEPSWYMPIIPLVLVNGSEGIGTGWSSYIPNYNPKDI 1441
            ITRFLFPKDDDILLDYLNEDGQSIEP+WY+P IP+VLVNGSEGIGTGWSS IPNYNP+DI
Sbjct: 796  ITRFLFPKDDDILLDYLNEDGQSIEPTWYVPTIPMVLVNGSEGIGTGWSSSIPNYNPRDI 855

Query: 1442 VANVKRLLNNEPMQPMDPWYRGFKGRIEKS-ATKEGGLTYTITGLIEEIDSTTLRVTELP 1618
            +ANV+RLLN E M+PMDPWYRGF+G IEK+  TK+  + YT+ G+IEE++ TTLR++ELP
Sbjct: 856  IANVRRLLNGEMMEPMDPWYRGFRGTIEKTDPTKQESVGYTVKGIIEEVNETTLRISELP 915

Query: 1619 VRRWTQDYKEFLESSMTGNDKIKEPFIKDYREHNDDKTVHFEVSVTEENMNIARQEGLEK 1798
            VR+WTQDYKEFLES MTGNDKIK+PFIKDY+EHNDD TVHFEV ++EEN+ +A+QEGL +
Sbjct: 916  VRKWTQDYKEFLESIMTGNDKIKDPFIKDYKEHNDDTTVHFEVIMSEENLLMAKQEGLLQ 975

Query: 1799 KFKLTTTISTTNMHLFDSKSVIKKYDSPEQILEEFFALRFVYYEKRXXXXXXXXXXXXXX 1978
            KFKLTT IST+NMHLFDS   IKKY++PEQILEEFF LR  +YEKR              
Sbjct: 976  KFKLTTKISTSNMHLFDSNGTIKKYETPEQILEEFFHLRLEFYEKRKRVLLDNLELELLK 1035

Query: 1979 XXXXXRFILGVVRDEIVVNKRKRADLFLELQQKGFTPFPKKTKGIDAAVAGASEEDGEQE 2158
                 RFILGVVR EI+V+ RKRADLF EL QKGFTPFPKK+K ++ AVAGA+++  E E
Sbjct: 1036 LENKVRFILGVVRGEIIVSNRKRADLFHELHQKGFTPFPKKSKSVEIAVAGATDDTEEAE 1095

Query: 2159 ESPQP-GKGGALASDYDYLMSMRIDSLTEEKVQELCAQKEKLEAEVDELRRTSPQTXXXX 2335
            E+     KGG  A+DY+YL+SM I +LT EKVQELCA ++KL   VD+L++ +P+     
Sbjct: 1096 ENTDAVSKGGVRATDYEYLLSMAIGTLTLEKVQELCADRDKLNKGVDDLKKATPKALWIT 1155

Query: 2336 XXXXXXXXXXXXXXXXXXAEGARKEM--RMNHIAGVAPSKQGAKKPRKNT--ANKLSVSA 2503
                              AE  RK++  R+   AG+  S+Q  K PRKN   AN    +A
Sbjct: 1156 DLDALERELDEQDKNDARAEETRKQLKSRVMSEAGMKVSRQAPKNPRKNNKKANNAEPAA 1215

Query: 2504 TTTD---------------------AGGQXXXXXXXXXXQTVEESDEDEEILALKDRLAA 2620
             T D                     A  +           +V + ++D+E+  LK+RLAA
Sbjct: 1216 ETMDVSASSAMEMESVPEVVKPKGRAAPRKAPAKKKEMPTSVLKDEDDDEVHELKERLAA 1275

Query: 2621 YNLDSSPDNGAMETDTVVSDQGKAKKQPSRNAAAKKA-----TYALSSDEDDEPEQQQRL 2785
            YNL+SSPD  A     V       KK+PSR AAA+K      T     DEDDE  + + +
Sbjct: 1276 YNLESSPDGSAAMEAEVPQVPAARKKEPSRRAAAQKKPLASFTEISDDDEDDEDFEVEEV 1335

Query: 2786 MPTIXXXXXXXXXXXXXXXXGRKPKNETAK----ATRKRGPAQASKATTT---------- 2923
              +                   KP    AK    A  K+ P    +   T          
Sbjct: 1336 SASDVKKKGGRKPAANAKAAAAKPAAAAAKNKRGAANKQQPQLLGQTLLTEIFKPAETLG 1395

Query: 2924 ---SQKVRKMRASPFNKKSGSVLSKPRNED--------------XXXXXXXXXXXXXXXR 3052
                +KVRKMRASPFNKKSGSVL     ED                             R
Sbjct: 1396 ISPEKKVRKMRASPFNKKSGSVLGSTGEEDETAETEENSGSASTSNSSGGESNEVVMPAR 1455

Query: 3053 TRPKRESRTKAAVYVESDS 3109
            TRP+RE+R +   YV SDS
Sbjct: 1456 TRPQRENRVQTR-YVVSDS 1473


>gb|EOY18138.1| DNA topoisomerase 2 isoform 2 [Theobroma cacao]
          Length = 1285

 Score = 1276 bits (3301), Expect = 0.0
 Identities = 687/1094 (62%), Positives = 797/1094 (72%), Gaps = 58/1094 (5%)
 Frame = +2

Query: 2    LTTRQGSLGSKCELSQDFLKKVAKSGVVNTLLTWADFKQSKELKKTDGAKRQRITGIPKL 181
            LT RQ S GSKCELS+DFLKKVAK GVV+ LL+WA+FK SK+LKKTDGAK   I GIPKL
Sbjct: 185  LTLRQSSFGSKCELSEDFLKKVAKCGVVDNLLSWAEFKHSKDLKKTDGAKTGSIRGIPKL 244

Query: 182  EDANDAGGRNSDKCTLILTEGDSAKALAMSGISVVGRNYYGVFPLRGKLLNVREANHKQI 361
            +DAN+AGGRNSDKCTLILTEGDSAKALA++G++VVGRN+YGVFPLRGKLLNVREA+HKQ+
Sbjct: 245  DDANEAGGRNSDKCTLILTEGDSAKALAVAGLAVVGRNHYGVFPLRGKLLNVREASHKQL 304

Query: 362  MDNAEIQNIKQILGLQHGKEYDSAKGLRYGHLMIMTDQDHDGSHIKGLLINFIHTFWPSL 541
            MDNAEIQN+K+ILGLQ GKEY + K LRYGHLMIMTDQDHDGSHIKGLLINFIH+FWPSL
Sbjct: 305  MDNAEIQNLKRILGLQQGKEYSNVKSLRYGHLMIMTDQDHDGSHIKGLLINFIHSFWPSL 364

Query: 542  LKVPSFMVEFITPLLKATNNRTKTVLSFYSMPEFEAWKESLGGNSNGWSIKYYKGLGTSK 721
            LKVPSFMVEFITP++KAT+ +TK VLSFYSMPE+E WKESLGGN+ GWSIKYYKGLGTS 
Sbjct: 365  LKVPSFMVEFITPIVKATH-KTKGVLSFYSMPEYEFWKESLGGNAKGWSIKYYKGLGTST 423

Query: 722  SEEGKEYFRNIGMHKKEFVWMDAQDGESIELAFSKKKIEARKNWLRQFEPENYLDQSETL 901
            S+EGK+YF+N+  H+KEFVW D QDGE+IELAFSKKKIEARKNWLRQFEP  +LDQS+ L
Sbjct: 424  SKEGKDYFKNLDKHRKEFVWQDEQDGEAIELAFSKKKIEARKNWLRQFEPGTHLDQSQKL 483

Query: 902  IKYSDFINKELILFSRADLQRSIPSMVDGLKPGQRKILFCAFKRNFVKQAKVAQFIGYVS 1081
            IKYS+FINKELILFS ADLQRSIPSM+DGLKPGQRKILFC+FKRNFVK+AKVAQF GYVS
Sbjct: 484  IKYSEFINKELILFSMADLQRSIPSMIDGLKPGQRKILFCSFKRNFVKEAKVAQFSGYVS 543

Query: 1082 ENSAYHHGEQSLATTIIAMAQDFVGSNNINLLQPEGQFGTRHQGGKDHASARYIFTCLAP 1261
            E+SAYHHGEQSLA+TI+ MAQDFVGSNNINLL P GQFGTR+QGGKD ASARYIFT L+P
Sbjct: 544  EHSAYHHGEQSLASTIVGMAQDFVGSNNINLLNPGGQFGTRNQGGKDAASARYIFTNLSP 603

Query: 1262 ITRFLFPKDDDILLDYLNEDGQSIEPSWYMPIIPLVLVNGSEGIGTGWSSYIPNYNPKDI 1441
            ITR+LFPKDDD LLDYLNEDGQSIEP WY+PIIP+VLVNGSEGIGTGWSSYIPNYNP+DI
Sbjct: 604  ITRYLFPKDDDGLLDYLNEDGQSIEPIWYVPIIPMVLVNGSEGIGTGWSSYIPNYNPRDI 663

Query: 1442 VANVKRLLNNEPMQPMDPWYRGFKGRIEKSATKEGGLTYTITGLIEEIDSTTLRVTELPV 1621
            VANV+RLLN E M+PM PWYRGFKG IEK+A+KE G+TYTITG+IEE+D TTLR+TELPV
Sbjct: 664  VANVRRLLNGEQMEPMHPWYRGFKGNIEKTASKEAGVTYTITGIIEEVDETTLRITELPV 723

Query: 1622 RRWTQDYKEFLESSMTGNDKIKEPFIKDYREHNDDKTVHFEVSVTEENMNIARQEGLEKK 1801
            RRWTQDY+EFLES +TGND    PFIK++R+++DD TV FEV +TEENM +A+QEGL KK
Sbjct: 724  RRWTQDYREFLESIITGND----PFIKEFRQYSDDTTVEFEVILTEENMMVAKQEGLLKK 779

Query: 1802 FKLTTTISTTNMHLFDSKSVIKKYDSPEQILEEFFALRFVYYEKRXXXXXXXXXXXXXXX 1981
            FKLTTTIST+NMHLFDSK +IKKYD+PEQILEEFF LRF +YEKR               
Sbjct: 780  FKLTTTISTSNMHLFDSKGMIKKYDTPEQILEEFFHLRFEFYEKRKKLLLDNLEMELLKM 839

Query: 1982 XXXXRFILGVVRDEIVVNKRKRADLFLELQQKGFTPFPKKTKGIDAAVAGASEEDGEQEE 2161
                RFILGVV+ EI+VN RKRADLFLELQ KGFTPFPKK K ++ AVAGA+++  E EE
Sbjct: 840  ENKVRFILGVVKGEIIVNNRKRADLFLELQTKGFTPFPKKAKTVEVAVAGATDDTEETEE 899

Query: 2162 SPQPGKGGALASDYDYLMSMRIDSLTEEKVQELCAQKEKLEAEVDELRRTSPQTXXXXXX 2341
            + +    G  ASDYDYL+SM I SLT EKVQELCA ++KL+ EV++LR+ +P++      
Sbjct: 900  NSEVSAKGLQASDYDYLLSMAIGSLTLEKVQELCADRDKLQQEVEDLRKATPKS-LWLKD 958

Query: 2342 XXXXXXXXXXXXXXXXAEGARKEMRMNHIAGVAPSKQGAKKPRK-NTANKLSVSAT-TTD 2515
                            AE A K ++    AG    +Q  K PRK N   K + + T TTD
Sbjct: 959  LDNLEIQLDEQDKAAQAEEAAKLVKGRGEAGKRAQRQAPKIPRKINKKEKNAETVTETTD 1018

Query: 2516 AGGQXXXXXXXXXXQTV-----------------EESDEDEEILALKDRLAAYNLDSSPD 2644
                            V                 ++ DED  I  L++RLA YNLDSSPD
Sbjct: 1019 ISSSSAMETAETAPAAVKPKGRGGSRKAKKDDSDDDDDEDFGIPDLRERLAKYNLDSSPD 1078

Query: 2645 -NGAMETDTVVSDQGKAKKQPSRNAAAKKATYALSSDEDDEPEQQQRLM-PTIXXXXXXX 2818
             + AMET+  V      KK+PS+ AAA +   A S  E  E   +  +    +       
Sbjct: 1079 HSAAMETE--VPQVPAGKKEPSKRAAAARKKPATSLSEISESIGEIDINDEDLEVVEVAA 1136

Query: 2819 XXXXXXXXXGRKP---KNETAK---ATRKRGPAQASKAT------------------TTS 2926
                     GRKP       AK   A +KRGPA A K +                  +  
Sbjct: 1137 AAAPAGKKGGRKPAANSKAAAKPPAAAKKRGPAAAGKKSQQQKLLTEMLKPAEDSGISPE 1196

Query: 2927 QKVRKMRASPFNKKSGSVLSKPRNE-------------DXXXXXXXXXXXXXXXRTRPKR 3067
            +KVRKMRASPFNKKSGSVL +   E                             R RP+R
Sbjct: 1197 KKVRKMRASPFNKKSGSVLGRVGKELESTTDSEETFGSSSMSADTEEVTEIVPARPRPQR 1256

Query: 3068 ESRTKAAVYVESDS 3109
             +R K   YV SDS
Sbjct: 1257 TNR-KQTTYVLSDS 1269


>gb|EOY18137.1| DNA topoisomerase 2 isoform 1 [Theobroma cacao]
          Length = 1473

 Score = 1275 bits (3299), Expect = 0.0
 Identities = 684/1093 (62%), Positives = 797/1093 (72%), Gaps = 57/1093 (5%)
 Frame = +2

Query: 2    LTTRQGSLGSKCELSQDFLKKVAKSGVVNTLLTWADFKQSKELKKTDGAKRQRITGIPKL 181
            LT RQ S GSKCELS+DFLKKVAK GVV+ LL+WA+FK SK+LKKTDGAK   I GIPKL
Sbjct: 374  LTLRQSSFGSKCELSEDFLKKVAKCGVVDNLLSWAEFKHSKDLKKTDGAKTGSIRGIPKL 433

Query: 182  EDANDAGGRNSDKCTLILTEGDSAKALAMSGISVVGRNYYGVFPLRGKLLNVREANHKQI 361
            +DAN+AGGRNSDKCTLILTEGDSAKALA++G++VVGRN+YGVFPLRGKLLNVREA+HKQ+
Sbjct: 434  DDANEAGGRNSDKCTLILTEGDSAKALAVAGLAVVGRNHYGVFPLRGKLLNVREASHKQL 493

Query: 362  MDNAEIQNIKQILGLQHGKEYDSAKGLRYGHLMIMTDQDHDGSHIKGLLINFIHTFWPSL 541
            MDNAEIQN+K+ILGLQ GKEY + K LRYGHLMIMTDQDHDGSHIKGLLINFIH+FWPSL
Sbjct: 494  MDNAEIQNLKRILGLQQGKEYSNVKSLRYGHLMIMTDQDHDGSHIKGLLINFIHSFWPSL 553

Query: 542  LKVPSFMVEFITPLLKATNNRTKTVLSFYSMPEFEAWKESLGGNSNGWSIKYYKGLGTSK 721
            LKVPSFMVEFITP++KAT+ +TK VLSFYSMPE+E WKESLGGN+ GWSIKYYKGLGTS 
Sbjct: 554  LKVPSFMVEFITPIVKATH-KTKGVLSFYSMPEYEFWKESLGGNAKGWSIKYYKGLGTST 612

Query: 722  SEEGKEYFRNIGMHKKEFVWMDAQDGESIELAFSKKKIEARKNWLRQFEPENYLDQSETL 901
            S+EGK+YF+N+  H+KEFVW D QDGE+IELAFSKKKIEARKNWLRQFEP  +LDQS+ L
Sbjct: 613  SKEGKDYFKNLDKHRKEFVWQDEQDGEAIELAFSKKKIEARKNWLRQFEPGTHLDQSQKL 672

Query: 902  IKYSDFINKELILFSRADLQRSIPSMVDGLKPGQRKILFCAFKRNFVKQAKVAQFIGYVS 1081
            IKYS+FINKELILFS ADLQRSIPSM+DGLKPGQRKILFC+FKRNFVK+AKVAQF GYVS
Sbjct: 673  IKYSEFINKELILFSMADLQRSIPSMIDGLKPGQRKILFCSFKRNFVKEAKVAQFSGYVS 732

Query: 1082 ENSAYHHGEQSLATTIIAMAQDFVGSNNINLLQPEGQFGTRHQGGKDHASARYIFTCLAP 1261
            E+SAYHHGEQSLA+TI+ MAQDFVGSNNINLL P GQFGTR+QGGKD ASARYIFT L+P
Sbjct: 733  EHSAYHHGEQSLASTIVGMAQDFVGSNNINLLNPGGQFGTRNQGGKDAASARYIFTNLSP 792

Query: 1262 ITRFLFPKDDDILLDYLNEDGQSIEPSWYMPIIPLVLVNGSEGIGTGWSSYIPNYNPKDI 1441
            ITR+LFPKDDD LLDYLNEDGQSIEP WY+PIIP+VLVNGSEGIGTGWSSYIPNYNP+DI
Sbjct: 793  ITRYLFPKDDDGLLDYLNEDGQSIEPIWYVPIIPMVLVNGSEGIGTGWSSYIPNYNPRDI 852

Query: 1442 VANVKRLLNNEPMQPMDPWYRGFKGRIEKSATKEGGLTYTITGLIEEIDSTTLRVTELPV 1621
            VANV+RLLN E M+PM PWYRGFKG IEK+A+KE G+TYTITG+IEE+D TTLR+TELPV
Sbjct: 853  VANVRRLLNGEQMEPMHPWYRGFKGNIEKTASKEAGVTYTITGIIEEVDETTLRITELPV 912

Query: 1622 RRWTQDYKEFLESSMTGNDKIKEPFIKDYREHNDDKTVHFEVSVTEENMNIARQEGLEKK 1801
            RRWTQDY+EFLES +TGND    PFIK++R+++DD TV FEV +TEENM +A+QEGL KK
Sbjct: 913  RRWTQDYREFLESIITGND----PFIKEFRQYSDDTTVEFEVILTEENMMVAKQEGLLKK 968

Query: 1802 FKLTTTISTTNMHLFDSKSVIKKYDSPEQILEEFFALRFVYYEKRXXXXXXXXXXXXXXX 1981
            FKLTTTIST+NMHLFDSK +IKKYD+PEQILEEFF LRF +YEKR               
Sbjct: 969  FKLTTTISTSNMHLFDSKGMIKKYDTPEQILEEFFHLRFEFYEKRKKLLLDNLEMELLKM 1028

Query: 1982 XXXXRFILGVVRDEIVVNKRKRADLFLELQQKGFTPFPKKTKGIDAAVAGASEEDGEQEE 2161
                RFILGVV+ EI+VN RKRADLFLELQ KGFTPFPKK K ++ AVAGA+++  E EE
Sbjct: 1029 ENKVRFILGVVKGEIIVNNRKRADLFLELQTKGFTPFPKKAKTVEVAVAGATDDTEETEE 1088

Query: 2162 SPQPGKGGALASDYDYLMSMRIDSLTEEKVQELCAQKEKLEAEVDELRRTSPQTXXXXXX 2341
            + +    G  ASDYDYL+SM I SLT EKVQELCA ++KL+ EV++LR+ +P++      
Sbjct: 1089 NSEVSAKGLQASDYDYLLSMAIGSLTLEKVQELCADRDKLQQEVEDLRKATPKS-LWLKD 1147

Query: 2342 XXXXXXXXXXXXXXXXAEGARKEMRMNHIAGVAPSKQGAKKPRK------------NTAN 2485
                            AE A K ++    AG    +Q  K PRK             T +
Sbjct: 1148 LDNLEIQLDEQDKAAQAEEAAKLVKGRGEAGKRAQRQAPKIPRKINKKEKNAETVTETTD 1207

Query: 2486 KLSVSATTTDAGGQXXXXXXXXXXQTVEESDEDEE------ILALKDRLAAYNLDSSPD- 2644
              S SA  T+              +  ++ D D++      I  L++RLA YNLDSSPD 
Sbjct: 1208 ISSSSAMETETAPAAVKPKGRGGSRKAKKDDSDDDDDEDFGIPDLRERLAKYNLDSSPDH 1267

Query: 2645 NGAMETDTVVSDQGKAKKQPSRNAAAKKATYALSSDEDDEPEQQQRLM-PTIXXXXXXXX 2821
            + AMET+  V      KK+PS+ AAA +   A S  E  E   +  +    +        
Sbjct: 1268 SAAMETE--VPQVPAGKKEPSKRAAAARKKPATSLSEISESIGEIDINDEDLEVVEVAAA 1325

Query: 2822 XXXXXXXXGRKP---KNETAK---ATRKRGPAQASKAT------------------TTSQ 2929
                    GRKP       AK   A +KRGPA A K +                  +  +
Sbjct: 1326 AAPAGKKGGRKPAANSKAAAKPPAAAKKRGPAAAGKKSQQQKLLTEMLKPAEDSGISPEK 1385

Query: 2930 KVRKMRASPFNKKSGSVLSKPRNE-------------DXXXXXXXXXXXXXXXRTRPKRE 3070
            KVRKMRASPFNKKSGSVL +   E                             R RP+R 
Sbjct: 1386 KVRKMRASPFNKKSGSVLGRVGKELESTTDSEETFGSSSMSADTEEVTEIVPARPRPQRT 1445

Query: 3071 SRTKAAVYVESDS 3109
            +R K   YV SDS
Sbjct: 1446 NR-KQTTYVLSDS 1457


>ref|XP_006838283.1| hypothetical protein AMTR_s00103p00101630 [Amborella trichopoda]
            gi|548840751|gb|ERN00852.1| hypothetical protein
            AMTR_s00103p00101630 [Amborella trichopoda]
          Length = 1505

 Score = 1246 bits (3223), Expect = 0.0
 Identities = 656/1075 (61%), Positives = 766/1075 (71%), Gaps = 75/1075 (6%)
 Frame = +2

Query: 2    LTTRQGSLGSKCELSQDFLKKVAKSGVVNTLLTWADFKQSKELKKTDGAKRQRITGIPKL 181
            LTTRQGS GSKCELS++FLKK A SG+V +LL+WADFKQSK+LKKTDG K QRITG+PKL
Sbjct: 386  LTTRQGSFGSKCELSEEFLKKAANSGIVESLLSWADFKQSKDLKKTDGTKCQRITGLPKL 445

Query: 182  EDANDAGGRNSDKCTLILTEGDSAKALAMSGISVVGRNYYGVFPLRGKLLNVREANHKQI 361
            EDAN AGGRNS+KCTLILTEGDSAKALAM+GISVVGR+++GVFPLRGKLLNVREA   QI
Sbjct: 446  EDANQAGGRNSEKCTLILTEGDSAKALAMAGISVVGRDHFGVFPLRGKLLNVREATKTQI 505

Query: 362  MDNAEIQNIKQILGLQHGKEYDSAKGLRYGHLMIMTDQDHDGSHIKGLLINFIHTFWPSL 541
             DN EIQNIKQILGLQHGK YDS K LRYGHLMIMTDQDHDGSHIKGLLINFIH+FWPSL
Sbjct: 506  KDNKEIQNIKQILGLQHGKVYDSVKSLRYGHLMIMTDQDHDGSHIKGLLINFIHSFWPSL 565

Query: 542  LKVPSFMVEFITPLLKATNNRTKTVLSFYSMPEFEAWKESLGGNSNGWSIKYYKGLGTSK 721
            LKVPSF+VEFITP++KA N   K VLSFY++PE+E+WKESLGGN+ GW+IKYYKGLGTS 
Sbjct: 566  LKVPSFLVEFITPIVKARNKNGK-VLSFYTLPEYESWKESLGGNARGWTIKYYKGLGTST 624

Query: 722  SEEGKEYFRNIGMHKKEFVWMDAQDGESIELAFSKKKIEARKNWLRQFEPENYLDQSETL 901
            S+EGKEYF+ I  HKK+F+W+D QDG++IELAFSKKKIEARKNWLR FEP  YLDQ E L
Sbjct: 625  SQEGKEYFKEINKHKKDFIWVDDQDGDAIELAFSKKKIEARKNWLRHFEPGTYLDQKEKL 684

Query: 902  IKYSDFINKELILFSRADLQRSIPSMVDGLKPGQRKILFCAFKRNFVKQAKVAQFIGYVS 1081
            IKYSDF+NKELILFS ADLQRSIPSMVDGLKPGQRKILFC+FKRNFV QAKV QF GYVS
Sbjct: 685  IKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFVSQAKVVQFSGYVS 744

Query: 1082 ENSAYHHGEQSLATTIIAMAQDFVGSNNINLLQPEGQFGTRHQGGKDHASARYIFTCLAP 1261
            E+SAYHHGEQSLA TI+ MAQDFVG+NNINLLQP GQFGTR++GGKD ASARYIFTCL+P
Sbjct: 745  EHSAYHHGEQSLAATIVGMAQDFVGTNNINLLQPLGQFGTRNRGGKDAASARYIFTCLSP 804

Query: 1262 ITRFLFPKDDDILLDYLNEDGQSIEPSWYMPIIPLVLVNGSEGIGTGWSSYIPNYNPKDI 1441
            ITRFLFPKDDD+LLDY NEDGQ IEP+WYMPIIPLVL+NGSEGIGTGWSSY+PNYNP+D+
Sbjct: 805  ITRFLFPKDDDVLLDYQNEDGQCIEPNWYMPIIPLVLINGSEGIGTGWSSYVPNYNPRDV 864

Query: 1442 VANVKRLLNNEPMQPMDPWYRGFKGRIEKSATKEGGLTYTITGLIEEIDSTTLRVTELPV 1621
             ANVKRLLN E M PM+PWY+GFKG IEKSATKEGG+ YT++G++EEI+ TTLR+TELP+
Sbjct: 865  AANVKRLLNGESMLPMEPWYKGFKGTIEKSATKEGGVGYTVSGIVEEINETTLRITELPI 924

Query: 1622 RRWTQDYKEFLESSMTGNDKIKEPFIKDYREHNDDKTVHFEVSVTEENMNIARQEGLEKK 1801
            RRWT+DYK +LES  TG++K KEPFI DY+EHN D  VHF+V + EENM I++QEGL K 
Sbjct: 925  RRWTEDYKVYLESLRTGSEKTKEPFIVDYKEHNTDTRVHFDVLLPEENMKISQQEGLMKM 984

Query: 1802 FKLTTTISTTNMHLFDSKSVIKKYDSPEQILEEFFALRFVYYEKRXXXXXXXXXXXXXXX 1981
            FKLTTTIST+NMHLF++K VIKKYD+PEQILEEFF LR  YY KR               
Sbjct: 985  FKLTTTISTSNMHLFNAKGVIKKYDTPEQILEEFFHLRLDYYGKRKKVLLDNLELELLKL 1044

Query: 1982 XXXXRFILGVVRDEIVVNKRKRADLFLELQQKGFTPFPKKTKGIDAAVAGASEEDGEQEE 2161
                RFILGVV  EIVV+KRKRADL LEL+ KGFTPFPKK+K ++AA+AGA+  D E EE
Sbjct: 1045 DNKARFILGVVNGEIVVSKRKRADLVLELRDKGFTPFPKKSKNVEAALAGATPVDEEGEE 1104

Query: 2162 SPQPGKGGALASDYDYLMSMRIDSLTEEKVQELCAQKEKLEAEVDELRRTSPQTXXXXXX 2341
            SP+    G  ASDYDYL+SM I +LT EKVQELCA+K+KLE +V ELR  +P+       
Sbjct: 1105 SPEVDDRGINASDYDYLLSMAIGTLTIEKVQELCAEKDKLEHDVKELRGLTPKA----LW 1160

Query: 2342 XXXXXXXXXXXXXXXXAEGARKEMRMNHIAGVAPS--KQGAKKPRKNTANKLSVSATTTD 2515
                             E    E  +N++   A    +Q  K PRKNT          TD
Sbjct: 1161 IKDLDAFLAQLDAEAVQEAKDDEYELNNMVSDAAKIFRQVGKNPRKNTKKPAPAEHVDTD 1220

Query: 2516 AGGQXXXXXXXXXXQTVE-----------ESDEDEEILALKDRLAAYNLDSSPDNGAMET 2662
            A             +              E  ED+ +L L  RLA YN++SSP++  MET
Sbjct: 1221 ASDTTTTEVAAKPKKRAPKKAPTKKKVDVEDMEDDLLLDLNARLAKYNIESSPEHADMET 1280

Query: 2663 DTVVSDQGKAKKQPSRNAAAK-KATYALSSD---------EDDEPEQQQRLMPT------ 2794
            D         +++PS+ A +K +  YA  SD         E+++ E+Q+   P       
Sbjct: 1281 DL------PERREPSKRAVSKPQQVYADISDDESEHLEEIEEEKEEEQEDEDPKPAKGKK 1334

Query: 2795 --------------------IXXXXXXXXXXXXXXXXGRKPKNETAK-----------AT 2881
                                +                  KPK    K           A 
Sbjct: 1335 KQAPKPKEKKKMDGSSDEEFVISDEDLSVFDIETEDAPPKPKGRAKKPLSNKPKAPTGAA 1394

Query: 2882 RKRGPAQASK---------------ATTTSQKVRKMRASPFNKKSGSVLSKPRNE 3001
            +KRG A + +                 +  +KVRKMRASPFNKKSGSVL +   E
Sbjct: 1395 KKRGAASSKQPILNQKLITEVLKPVGVSPEKKVRKMRASPFNKKSGSVLGRIERE 1449


>emb|CBI24922.3| unnamed protein product [Vitis vinifera]
          Length = 1452

 Score = 1232 bits (3188), Expect = 0.0
 Identities = 658/1098 (59%), Positives = 772/1098 (70%), Gaps = 62/1098 (5%)
 Frame = +2

Query: 2    LTTRQGSLGSKCELSQDFLKKVAKSGVVNTLLTWADFKQSKELKKTDGAKRQRITGIPKL 181
            LT RQ S GSKCELSQ+FLKKV+KSGVV +LL+WAD+KQ+K+LKKTDG KRQR+TGI KL
Sbjct: 377  LTIRQSSFGSKCELSQEFLKKVSKSGVVESLLSWADYKQNKDLKKTDGTKRQRLTGITKL 436

Query: 182  EDANDAGGRNSDKCTLILTEGDSAKALAMSGISVVGRNYYGVFPLRGKLLNVREANHKQI 361
            EDANDAGGRNS+KCTLILTEGDSAKALAM+GISVVGRN+YGVFPLRGKLLNVR+A  KQI
Sbjct: 437  EDANDAGGRNSEKCTLILTEGDSAKALAMAGISVVGRNHYGVFPLRGKLLNVRDAQKKQI 496

Query: 362  MDNAEIQNIKQILGLQHGKEYDSAKGLRYGHLMIMTDQDHDGSHIKGLLINFIHTFWPSL 541
            ++NAEIQNIKQILGLQ GKEYDS K LRYGHLMIMTDQDHDGSHIKGLLINFIH+FWPSL
Sbjct: 497  LENAEIQNIKQILGLQQGKEYDSIKSLRYGHLMIMTDQDHDGSHIKGLLINFIHSFWPSL 556

Query: 542  LKVPSFMVEFITPLLKATNNRTKTVLSFYSMPEFEAWKESLGGNSNGWSIKYYKGLGTSK 721
            LK+PSF+VEFITP++KAT+ R   VLSFYSMPE+E+WKESLGGN++GWSIKYYKGLGTS 
Sbjct: 557  LKIPSFLVEFITPIVKATH-RNGRVLSFYSMPEYESWKESLGGNASGWSIKYYKGLGTST 615

Query: 722  SEEGKEYFRNIGMHKKEFVWMDAQDGESIELAFSKKKIEARKNWLRQFEPENYLDQSETL 901
            S+EGKEYF+++G HKK+F+W+D +DG++IELAFSKKKIE RKNWLRQF+P  YLDQ E L
Sbjct: 616  SKEGKEYFKDLGKHKKDFMWVDEKDGDAIELAFSKKKIEERKNWLRQFQPGTYLDQKEKL 675

Query: 902  IKYSDFINKELILFSRADLQRSIPSMVDGLKPGQRKILFCAFKRNFVKQAKVAQFIGYVS 1081
            IKYSDF+NKELILFS ADLQRSIPSMVDGLKPGQRKILFC+FKRNF+K+AK+AQF GYVS
Sbjct: 676  IKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKIAQFSGYVS 735

Query: 1082 ENSAYHHGEQSLATTIIAMAQDFVGSNNINLLQPEGQFGTRHQGGKDHASARYIFTCLAP 1261
            E+SAYHHGEQSLA+TII MAQDFVGSNNINLL P GQFGTRHQGGKDHASARYI+T L+P
Sbjct: 736  EHSAYHHGEQSLASTIIGMAQDFVGSNNINLLLPNGQFGTRHQGGKDHASARYIYTRLSP 795

Query: 1262 ITRFLFPKDDDILLDYLNEDGQSIEPSWYMPIIPLVLVNGSEGIGTGWSSYIPNYNPKDI 1441
            ITRFLFPKDDDILLDYLNEDGQSIEP+WY+P IP+VLVNGSEGIGTGWSS IPNYNP+DI
Sbjct: 796  ITRFLFPKDDDILLDYLNEDGQSIEPTWYVPTIPMVLVNGSEGIGTGWSSSIPNYNPRDI 855

Query: 1442 VANVKRLLNNEPMQPMDPWYRGFKGRIEKS-ATKEGGLTYTITGLIEEIDSTTLRVTELP 1618
            +ANV+RLLN E M+PMDPWYRGF+G IEK+  TK+  + YT+ G+IEE++ TTLR++ELP
Sbjct: 856  IANVRRLLNGEMMEPMDPWYRGFRGTIEKTDPTKQESVGYTVKGIIEEVNETTLRISELP 915

Query: 1619 VRRWTQDYKEFLESSMTGNDKIKEPFIKDYREHNDDKTVHFEVSVTEENMNIARQEGLEK 1798
            VR+WTQDYKEFLES MTGNDKIK+PFIKDY+EHNDD TVHFEV ++EEN+ +A+QEGL +
Sbjct: 916  VRKWTQDYKEFLESIMTGNDKIKDPFIKDYKEHNDDTTVHFEVIMSEENLLMAKQEGLLQ 975

Query: 1799 KFKLTTTISTTNMHLFDSKSVIKKYDSPEQILEEFFALRFVYYEKRXXXXXXXXXXXXXX 1978
            KFKLTT IST+NMHLFDS   IKKY++PEQILEEFF LR  +YEKR              
Sbjct: 976  KFKLTTKISTSNMHLFDSNGTIKKYETPEQILEEFFHLRLEFYEKRKRVLLDNLELELLK 1035

Query: 1979 XXXXXRFILGVVRDEIVVNKRKRADLFLELQQKGFTPFPKKTKGIDAAVAGASEEDGEQE 2158
                 RFILGVVR EI+V+ RKRADLF EL QK                           
Sbjct: 1036 LENKVRFILGVVRGEIIVSNRKRADLFHELHQK--------------------------- 1068

Query: 2159 ESPQPGKGGALASDYDYLMSMRIDSLTEEKVQELCAQKEKLEAEVDELRRTSPQTXXXXX 2338
                       A+DY+YL+SM I +LT EKVQELCA ++KL   VD+L++ +P+      
Sbjct: 1069 ---------VRATDYEYLLSMAIGTLTLEKVQELCADRDKLNKGVDDLKKATPKALWITD 1119

Query: 2339 XXXXXXXXXXXXXXXXXAEGARKEM--RMNHIAGVAPSKQGAKKPRKNT--ANKLSVSAT 2506
                             AE  RK++  R+   AG+  S+Q  K PRKN   AN    +A 
Sbjct: 1120 LDALERELDEQDKNDARAEETRKQLKSRVMSEAGMKVSRQAPKNPRKNNKKANNAEPAAE 1179

Query: 2507 TTD---------------------AGGQXXXXXXXXXXQTVEESDEDEEILALKDRLAAY 2623
            T D                     A  +           +V + ++D+E+  LK+RLAAY
Sbjct: 1180 TMDVSASSAMEMESVPEVVKPKGRAAPRKAPAKKKEMPTSVLKDEDDDEVHELKERLAAY 1239

Query: 2624 NLDSSPDNGAMETDTVVSDQGKAKKQPSRNAAAKKA-----TYALSSDEDDEPEQQQRLM 2788
            NL+SSPD  A     V       KK+PSR AAA+K      T     DEDDE  + + + 
Sbjct: 1240 NLESSPDGSAAMEAEVPQVPAARKKEPSRRAAAQKKPLASFTEISDDDEDDEDFEVEEVS 1299

Query: 2789 PTIXXXXXXXXXXXXXXXXGRKPKNETAK----ATRKRGPAQASKATTT----------- 2923
             +                   KP    AK    A  K+ P    +   T           
Sbjct: 1300 ASDVKKKGGRKPAANAKAAAAKPAAAAAKNKRGAANKQQPQLLGQTLLTEIFKPAETLGI 1359

Query: 2924 --SQKVRKMRASPFNKKSGSVLSKPRNED--------------XXXXXXXXXXXXXXXRT 3055
               +KVRKMRASPFNKKSGSVL     ED                             RT
Sbjct: 1360 SPEKKVRKMRASPFNKKSGSVLGSTGEEDETAETEENSGSASTSNSSGGESNEVVMPART 1419

Query: 3056 RPKRESRTKAAVYVESDS 3109
            RP+RE+R +   YV SDS
Sbjct: 1420 RPQRENRVQTR-YVVSDS 1436


>gb|EOY18139.1| Topoisomerase II isoform 3 [Theobroma cacao]
          Length = 1244

 Score = 1216 bits (3146), Expect = 0.0
 Identities = 608/838 (72%), Positives = 699/838 (83%), Gaps = 1/838 (0%)
 Frame = +2

Query: 2    LTTRQGSLGSKCELSQDFLKKVAKSGVVNTLLTWADFKQSKELKKTDGAKRQRITGIPKL 181
            LT RQ S GSKCELS+DFLKKVAK GVV+ LL+WA+FK SK+LKKTDGAK   I GIPKL
Sbjct: 374  LTLRQSSFGSKCELSEDFLKKVAKCGVVDNLLSWAEFKHSKDLKKTDGAKTGSIRGIPKL 433

Query: 182  EDANDAGGRNSDKCTLILTEGDSAKALAMSGISVVGRNYYGVFPLRGKLLNVREANHKQI 361
            +DAN+AGGRNSDKCTLILTEGDSAKALA++G++VVGRN+YGVFPLRGKLLNVREA+HKQ+
Sbjct: 434  DDANEAGGRNSDKCTLILTEGDSAKALAVAGLAVVGRNHYGVFPLRGKLLNVREASHKQL 493

Query: 362  MDNAEIQNIKQILGLQHGKEYDSAKGLRYGHLMIMTDQDHDGSHIKGLLINFIHTFWPSL 541
            MDNAEIQN+K+ILGLQ GKEY + K LRYGHLMIMTDQDHDGSHIKGLLINFIH+FWPSL
Sbjct: 494  MDNAEIQNLKRILGLQQGKEYSNVKSLRYGHLMIMTDQDHDGSHIKGLLINFIHSFWPSL 553

Query: 542  LKVPSFMVEFITPLLKATNNRTKTVLSFYSMPEFEAWKESLGGNSNGWSIKYYKGLGTSK 721
            LKVPSFMVEFITP++KAT+ +TK VLSFYSMPE+E WKESLGGN+ GWSIKYYKGLGTS 
Sbjct: 554  LKVPSFMVEFITPIVKATH-KTKGVLSFYSMPEYEFWKESLGGNAKGWSIKYYKGLGTST 612

Query: 722  SEEGKEYFRNIGMHKKEFVWMDAQDGESIELAFSKKKIEARKNWLRQFEPENYLDQSETL 901
            S+EGK+YF+N+  H+KEFVW D QDGE+IELAFSKKKIEARKNWLRQFEP  +LDQS+ L
Sbjct: 613  SKEGKDYFKNLDKHRKEFVWQDEQDGEAIELAFSKKKIEARKNWLRQFEPGTHLDQSQKL 672

Query: 902  IKYSDFINKELILFSRADLQRSIPSMVDGLKPGQRKILFCAFKRNFVKQAKVAQFIGYVS 1081
            IKYS+FINKELILFS ADLQRSIPSM+DGLKPGQRKILFC+FKRNFVK+AKVAQF GYVS
Sbjct: 673  IKYSEFINKELILFSMADLQRSIPSMIDGLKPGQRKILFCSFKRNFVKEAKVAQFSGYVS 732

Query: 1082 ENSAYHHGEQSLATTIIAMAQDFVGSNNINLLQPEGQFGTRHQGGKDHASARYIFTCLAP 1261
            E+SAYHHGEQSLA+TI+ MAQDFVGSNNINLL P GQFGTR+QGGKD ASARYIFT L+P
Sbjct: 733  EHSAYHHGEQSLASTIVGMAQDFVGSNNINLLNPGGQFGTRNQGGKDAASARYIFTNLSP 792

Query: 1262 ITRFLFPKDDDILLDYLNEDGQSIEPSWYMPIIPLVLVNGSEGIGTGWSSYIPNYNPKDI 1441
            ITR+LFPKDDD LLDYLNEDGQSIEP WY+PIIP+VLVNGSEGIGTGWSSYIPNYNP+DI
Sbjct: 793  ITRYLFPKDDDGLLDYLNEDGQSIEPIWYVPIIPMVLVNGSEGIGTGWSSYIPNYNPRDI 852

Query: 1442 VANVKRLLNNEPMQPMDPWYRGFKGRIEKSATKEGGLTYTITGLIEEIDSTTLRVTELPV 1621
            VANV+RLLN E M+PM PWYRGFKG IEK+A+KE G+TYTITG+IEE+D TTLR+TELPV
Sbjct: 853  VANVRRLLNGEQMEPMHPWYRGFKGNIEKTASKEAGVTYTITGIIEEVDETTLRITELPV 912

Query: 1622 RRWTQDYKEFLESSMTGNDKIKEPFIKDYREHNDDKTVHFEVSVTEENMNIARQEGLEKK 1801
            RRWTQDY+EFLES +TGND    PFIK++R+++DD TV FEV +TEENM +A+QEGL KK
Sbjct: 913  RRWTQDYREFLESIITGND----PFIKEFRQYSDDTTVEFEVILTEENMMVAKQEGLLKK 968

Query: 1802 FKLTTTISTTNMHLFDSKSVIKKYDSPEQILEEFFALRFVYYEKRXXXXXXXXXXXXXXX 1981
            FKLTTTIST+NMHLFDSK +IKKYD+PEQILEEFF LRF +YEKR               
Sbjct: 969  FKLTTTISTSNMHLFDSKGMIKKYDTPEQILEEFFHLRFEFYEKRKKLLLDNLEMELLKM 1028

Query: 1982 XXXXRFILGVVRDEIVVNKRKRADLFLELQQKGFTPFPKKTKGIDAAVAGASEEDGEQEE 2161
                RFILGVV+ EI+VN RKRADLFLELQ KGFTPFPKK K ++ AVAGA+++  E EE
Sbjct: 1029 ENKVRFILGVVKGEIIVNNRKRADLFLELQTKGFTPFPKKAKTVEVAVAGATDDTEETEE 1088

Query: 2162 SPQPGKGGALASDYDYLMSMRIDSLTEEKVQELCAQKEKLEAEVDELRRTSPQTXXXXXX 2341
            + +    G  ASDYDYL+SM I SLT EKVQELCA ++KL+ EV++LR+ +P++      
Sbjct: 1089 NSEVSAKGLQASDYDYLLSMAIGSLTLEKVQELCADRDKLQQEVEDLRKATPKS-LWLKD 1147

Query: 2342 XXXXXXXXXXXXXXXXAEGARKEMRMNHIAGVAPSKQGAKKPRK-NTANKLSVSATTT 2512
                            AE A K ++    AG    +Q  K PRK N   K + + T T
Sbjct: 1148 LDNLEIQLDEQDKAAQAEEAAKLVKGRGEAGKRAQRQAPKIPRKINKKEKNAETVTET 1205


>ref|XP_006647737.1| PREDICTED: DNA topoisomerase 2-like [Oryza brachyantha]
          Length = 1506

 Score = 1208 bits (3125), Expect = 0.0
 Identities = 635/1057 (60%), Positives = 760/1057 (71%), Gaps = 61/1057 (5%)
 Frame = +2

Query: 2    LTTRQGSLGSKCELSQDFLKKVAKSGVVNTLLTWADFKQSKELKKTDGAKRQRITGIPKL 181
            LTTRQGS GS+C+LS+DFLKKV  S +V  LL+WADFK SKEL+KTDG+KR R+TGIPKL
Sbjct: 384  LTTRQGSFGSECKLSEDFLKKVGSSAIVTNLLSWADFKLSKELQKTDGSKRSRLTGIPKL 443

Query: 182  EDANDAGGRNSDKCTLILTEGDSAKALAMSGISVVGRNYYGVFPLRGKLLNVREANHKQI 361
            EDAN AGG++S  CTLILTEGDSAKALAM+GI+VVGR+ YGVFPLRGKLLNVREA+HKQI
Sbjct: 444  EDANGAGGKDSQMCTLILTEGDSAKALAMAGIAVVGRDRYGVFPLRGKLLNVREASHKQI 503

Query: 362  MDNAEIQNIKQILGLQHGKEYDSAKGLRYGHLMIMTDQDHDGSHIKGLLINFIHTFWPSL 541
            M+NAEIQNIKQILGLQHGK+YDS KGLRYGHLMIMTDQDHDGSHIKGLLINFIH+FWPSL
Sbjct: 504  MENAEIQNIKQILGLQHGKQYDSTKGLRYGHLMIMTDQDHDGSHIKGLLINFIHSFWPSL 563

Query: 542  LKVPSFMVEFITPLLKATNNRTK-TVLSFYSMPEFEAWKESLGGNSNGWSIKYYKGLGTS 718
            +K+PSF+VEFITP++KATN R K  VL FYSMPE+E WKESLGGN+ GWSIKYYKGLGTS
Sbjct: 564  IKIPSFLVEFITPIIKATNKRDKKNVLPFYSMPEYEQWKESLGGNARGWSIKYYKGLGTS 623

Query: 719  KSEEGKEYFRNIGMHKKEFVWMDAQDGESIELAFSKKKIEARKNWLRQFEPENYLDQSET 898
             S EG++YF++I  HKK+FVW + QD ++IELAFSKK+I  RK+WL  F+P  YLDQ + 
Sbjct: 624  TSTEGRQYFQDIAKHKKDFVWANDQDDDNIELAFSKKRITDRKDWLSNFQPGTYLDQHDK 683

Query: 899  LIKYSDFINKELILFSRADLQRSIPSMVDGLKPGQRKILFCAFKRNFVKQAKVAQFIGYV 1078
             IKYSDFINKELI FS ADL RSIPSMVDGLKPGQRKILFC+FKRN VK+ KVAQF GYV
Sbjct: 684  YIKYSDFINKELIQFSMADLLRSIPSMVDGLKPGQRKILFCSFKRNLVKETKVAQFSGYV 743

Query: 1079 SENSAYHHGEQSLATTIIAMAQDFVGSNNINLLQPEGQFGTRHQGGKDHASARYIFTCLA 1258
            SE+SAYHHGEQSLA+TI  MAQDFVGSNNINLL P GQFGTR QGGKD ASARYI+T LA
Sbjct: 744  SEHSAYHHGEQSLASTITGMAQDFVGSNNINLLLPLGQFGTRDQGGKDAASARYIYTQLA 803

Query: 1259 PITRFLFPKDDDILLDYLNEDGQSIEPSWYMPIIPLVLVNGSEGIGTGWSSYIPNYNPKD 1438
            PITR +FPKDDDILL+YL+EDGQSIEP+WY+PI+P+VLVNGSEGIGTGWS++IPNYNP+D
Sbjct: 804  PITRSIFPKDDDILLNYLDEDGQSIEPTWYVPILPMVLVNGSEGIGTGWSTFIPNYNPRD 863

Query: 1439 IVANVKRLLNNEPMQPMDPWYRGFKGRIEKSATKEGGLTYTITGLIEEIDSTTLRVTELP 1618
            IVAN++RLLNNEP++PMDPWYRGFKG I+K++TK GG++YT+TG+IE +D TTLR+TELP
Sbjct: 864  IVANLRRLLNNEPVEPMDPWYRGFKGSIQKTSTKAGGVSYTVTGIIEVLDDTTLRITELP 923

Query: 1619 VRRWTQDYKEFLESSMTGNDKIK--------------------EPFIKDYREHNDDKTVH 1738
            +RRW+QDYKEFL  S+ G DK K                    EPFI+ +  H+DDK V 
Sbjct: 924  IRRWSQDYKEFL-ISIGGMDKSKDKDKGKGKGKEKEKDKDKDIEPFIEVFDTHSDDKNVE 982

Query: 1739 FEVSVTEENMNIARQEGLEKKFKLTTTISTTNMHLFDSKSVIKKYDSPEQILEEFFALRF 1918
            F +++++ENM IA+QEGLEKKFKLTTTI TTNMHLFDS   I+KYD+PE IL+EFF LR 
Sbjct: 983  FLITLSKENMAIAKQEGLEKKFKLTTTIGTTNMHLFDSNGKIRKYDTPEDILQEFFGLRL 1042

Query: 1919 VYYEKRXXXXXXXXXXXXXXXXXXXRFILGVVRDEIVVNKRKRADLFLELQQKGFTPFPK 2098
             +YEKR                   RFIL VV  +I+VN RKRADLF+EL+QKGF PFPK
Sbjct: 1043 EFYEKRKRVLLENIELELKKLSNKVRFILAVVEGDIIVNNRKRADLFVELRQKGFDPFPK 1102

Query: 2099 KTKGIDAAVAGASEEDGEQEESPQPGKGGALASDYDYLMSMRIDSLTEEKVQELCAQKEK 2278
            K +  + A  GASEED E EESP+  K G  +SDY+YL+SM I +LT EKVQEL A+K +
Sbjct: 1103 KIQSTEPAAVGASEEDEENEESPETVK-GVSSSDYEYLLSMSIGTLTLEKVQELIAEKGR 1161

Query: 2279 LEAEVDELRRTSPQ-TXXXXXXXXXXXXXXXXXXXXXXAEGARKEMRMNHIAGVAPSKQG 2455
            LE  V EL+ T+P+                        AE  R    + H  GVAP    
Sbjct: 1162 LENGVAELKGTTPKLLWMRDLDEFEKQLDVLDEEDRINAEERRSTRNVGH--GVAPKAAA 1219

Query: 2456 AKKPRKNTANKLSV-----------------SATTTDAGGQXXXXXXXXXXQTVEESDED 2584
             ++P+K   N  +                  +A T                  +   DE+
Sbjct: 1220 RRRPKKTATNSEAAEITDGNVAAAAAVVRKPTAVTAIPKPAAQKKQPVKKASIISSDDEE 1279

Query: 2585 EEILALKDRLAAYNLDSSPDNGAMETDTV--VSDQGKAKKQPSRNAAAKKATYALSSDED 2758
            +E+LALKDRLAAY LD + ++ AMET+T    +   K KK+PS+  AAKKA  +L+   D
Sbjct: 1280 DEVLALKDRLAAYKLDDNSEDTAMETETAEEQTKTKKGKKEPSKRGAAKKALSSLAELSD 1339

Query: 2759 DEPEQQQRLMPTIXXXXXXXXXXXXXXXXGRKPKNETAK-ATRKRGPAQ----------- 2902
            D+ +  + +                    GRKP  E  K ATRKR PAQ           
Sbjct: 1340 DDEDATEPI--DKEDEEDFAMEVQVKKGRGRKPAAEKPKAATRKRAPAQGKSMRQKVMEE 1397

Query: 2903 --------ASKATTTSQKVRKMRASPFNKKSGSVLSK 2989
                    ++ A +  +KVRKMR SPF+KKSGSVL +
Sbjct: 1398 IFKPTEDSSTSAPSPEKKVRKMRVSPFHKKSGSVLQR 1434


>ref|XP_006345427.1| PREDICTED: DNA topoisomerase 2-like [Solanum tuberosum]
          Length = 1485

 Score = 1208 bits (3125), Expect = 0.0
 Identities = 641/1099 (58%), Positives = 782/1099 (71%), Gaps = 63/1099 (5%)
 Frame = +2

Query: 2    LTTRQGSLGSKCELSQDFLKKVAKS-GVVNTLLTWADFKQSKELKKTDGAKRQRITGIPK 178
            LT RQ S GSKCEL  DFLKKV K+ G+V++LL+WADFK SK+LKKTDG K  ++  + K
Sbjct: 374  LTLRQSSFGSKCELQPDFLKKVEKNIGIVDSLLSWADFKNSKDLKKTDGKKSDKVK-VEK 432

Query: 179  LEDANDAGGRNSDKCTLILTEGDSAKALAMSGISVVGRNYYGVFPLRGKLLNVREANHKQ 358
            LEDANDAGGRNSDKCTLILTEGDSAKALAM+GISVVGR++YGVFPLRGKLLNVREA+HKQ
Sbjct: 433  LEDANDAGGRNSDKCTLILTEGDSAKALAMAGISVVGRDHYGVFPLRGKLLNVREASHKQ 492

Query: 359  IMDNAEIQNIKQILGLQHGKEYDSAKGLRYGHLMIMTDQDHDGSHIKGLLINFIHTFWPS 538
            + +N EI++IK+ILGLQ GKEY+S K LRYGHLMIMTDQDHDGSHIKGLLINFIHTFWPS
Sbjct: 493  VSENKEIESIKKILGLQTGKEYESVKSLRYGHLMIMTDQDHDGSHIKGLLINFIHTFWPS 552

Query: 539  LLKVPSFMVEFITPLLKATNNRTKTVLSFYSMPEFEAWKESLGGNSNGWSIKYYKGLGTS 718
            LLKVPSF+VEFITP++KAT+ ++  +L+FY+MPE+EAW+ SLG  S+GWSIKYYKGLGTS
Sbjct: 553  LLKVPSFLVEFITPIVKATH-KSGRILAFYTMPEYEAWRRSLGATSSGWSIKYYKGLGTS 611

Query: 719  KSEEGKEYFRNIGMHKKEFVWMDAQDGESIELAFSKKKIEARKNWLRQFEPENYLDQSET 898
             S+EGKEYF+++  H+K+F+W D QDGESIELAFSKKKIEARKNWLRQFEP  +LDQ E 
Sbjct: 612  TSKEGKEYFQDLQKHRKDFIWADNQDGESIELAFSKKKIEARKNWLRQFEPGTHLDQKEK 671

Query: 899  LIKYSDFINKELILFSRADLQRSIPSMVDGLKPGQRKILFCAFKRNFVKQAKVAQFIGYV 1078
             I Y++F+NKELILFS ADLQRSIPSM+DGLKPGQRKILFCAFKRNFVK+AKV+QF GYV
Sbjct: 672  YISYTEFVNKELILFSMADLQRSIPSMLDGLKPGQRKILFCAFKRNFVKEAKVSQFSGYV 731

Query: 1079 SENSAYHHGEQSLATTIIAMAQDFVGSNNINLLQPEGQFGTRHQGGKDHASARYIFTCLA 1258
            SE+SAYHHGEQSL++TII MAQD+VGSNN+NLLQP GQFGTR+ GGKDHAS+RYI+T L+
Sbjct: 732  SEHSAYHHGEQSLSSTIIGMAQDYVGSNNVNLLQPNGQFGTRNMGGKDHASSRYIYTRLS 791

Query: 1259 PITRFLFPKDDDILLDYLNEDGQSIEPSWYMPIIPLVLVNGSEGIGTGWSSYIPNYNPKD 1438
            PI RFLFPKDDD +LDYLNEDGQSIEP+WY+PIIP+VLVNGSEGIGTGWSSY+PNYNP+D
Sbjct: 792  PIARFLFPKDDDTVLDYLNEDGQSIEPTWYIPIIPMVLVNGSEGIGTGWSSYVPNYNPRD 851

Query: 1439 IVANVKRLLNNEPMQPMDPWYRGFKGRIEKSATKEGGLTYTITGLIEEIDSTTLRVTELP 1618
            +VANV+RLLN+E M+PMDPWY+GFKG IEK+ATKE G TYT+TG+IEE   TTLR++ELP
Sbjct: 852  LVANVRRLLNDELMEPMDPWYKGFKGTIEKTATKETGATYTVTGIIEEFSETTLRISELP 911

Query: 1619 VRRWTQDYKEFLESSMTGNDKIKEPFIKDYREHNDDKTVHFEVSVTEENMNIARQEGLEK 1798
            VRRWT+DYK+FLES     DK K+ FIK+ R + D+ +V FEV ++EEN+ +A+QEGL K
Sbjct: 912  VRRWTEDYKQFLESMTVSTDKSKDAFIKEVRAYGDENSVCFEVIMSEENLLLAQQEGLLK 971

Query: 1799 KFKLTTTISTTNMHLFDSKSVIKKYDSPEQILEEFFALRFVYYEKRXXXXXXXXXXXXXX 1978
            KFKLTTTIST+NMHLFDSK  IKKYD+PE+ILEEF+ +R  YYEKR              
Sbjct: 972  KFKLTTTISTSNMHLFDSKGKIKKYDAPEEILEEFYHVRLEYYEKRKKTLLEILELELLR 1031

Query: 1979 XXXXXRFILGVVRDEIVVNKRKRADLFLELQQKGFTPFPKKTKGIDAAVAGASEEDGEQE 2158
                 RFILGVV+ EI+VN RKRADL LEL+ KGFTPFPKK K ++A VA ++++  + E
Sbjct: 1032 IENKVRFILGVVKGEIIVNNRKRADLLLELKNKGFTPFPKK-KPVEAVVADSTDDAEDSE 1090

Query: 2159 ESPQPGKGGALASDYDYLMSMRIDSLTEEKVQELCAQKEKLEAEVDELRRTSPQTXXXXX 2338
            ESP+    G  ASDYDYL+SM I +LT EKVQELCA ++KL AEV+++R  +P+      
Sbjct: 1091 ESPEESNKGVRASDYDYLLSMAIGTLTLEKVQELCADRDKLNAEVEDMRNATPKDLWMKD 1150

Query: 2339 XXXXXXXXXXXXXXXXXAEGARKEM--RMNHIAGVAPSKQGAKKPRK-----NTANKLSV 2497
                              E AR+++  ++ + AG AP  +  K  +K     +TA  + V
Sbjct: 1151 LDVLDKQLDEQDKLDIQTEEAREKLKKKVMNAAGKAPKPKPRKTTKKAAVVESTAEPMDV 1210

Query: 2498 S-------ATTTDA------GGQXXXXXXXXXXQTVEESDEDEEILALKDRLAAYNLDSS 2638
            S       A  T+       GG             VE+ +E++E+LALKDRLAAYNL+SS
Sbjct: 1211 SVGSMAETANVTEVAKPKGRGGGSKKAPAKAKPVVVEDEEEEDEVLALKDRLAAYNLNSS 1270

Query: 2639 PDNGAMETDTVVSDQGKAKKQPSRNAAAKK----ATYALSSDEDD-EPEQQQRLMPTIXX 2803
            PD   +        Q KA   P++ AAA+K    +T  +S  ED+ E        P +  
Sbjct: 1271 PDRSEVTETEAPKAQTKA---PAKRAAAQKKALPSTPDVSEGEDEIEISDDNEFAPEV-- 1325

Query: 2804 XXXXXXXXXXXXXXGRKPKNETA----KATRKRGPAQASK------------------AT 2917
                          GRKP    A    K  +KR PA                        
Sbjct: 1326 ------AVGGKKKGGRKPAAAKAAAAPKPPKKRAPANKQSQSVGQRLITQVLKPAEDAGV 1379

Query: 2918 TTSQKVRKMRASPFNKKSGSVLSK---------------PRNEDXXXXXXXXXXXXXXXR 3052
            +  +KVRKMR SPFNKKSG+V+ +               P                   +
Sbjct: 1380 SPDRKVRKMRESPFNKKSGAVMGRNTSSSSSTSHESEVSPPIPSLGSLEEEVSEVVVAPK 1439

Query: 3053 TRPKRESRTKAAVYVESDS 3109
             RP+R +RTK   YV SDS
Sbjct: 1440 ARPQRANRTK-TTYVISDS 1457


>gb|AAN85207.1| DNA topoisomerase II [Nicotiana tabacum] gi|26984168|gb|AAN85208.1|
            DNA topoisomerase II [Nicotiana tabacum]
          Length = 1482

 Score = 1205 bits (3118), Expect = 0.0
 Identities = 645/1113 (57%), Positives = 785/1113 (70%), Gaps = 77/1113 (6%)
 Frame = +2

Query: 2    LTTRQGSLGSKCELSQDFLKKVAKS-GVVNTLLTWADFKQSKELKKTDGAKRQRITGIPK 178
            LT RQ S GSKCEL  DFLKKV K+ G+V TLL+WADFK SK+LKKTDG K +++  + K
Sbjct: 373  LTLRQSSFGSKCELQPDFLKKVEKNIGIVETLLSWADFKNSKDLKKTDGKKSEKVK-VEK 431

Query: 179  LEDANDAGGRNSDKCTLILTEGDSAKALAMSGISVVGRNYYGVFPLRGKLLNVREANHKQ 358
            LEDANDAGGRNS+KCTLILTEGDSAKALAM+GISVVGR++YGVFPLRGKLLNVREA+HKQ
Sbjct: 432  LEDANDAGGRNSEKCTLILTEGDSAKALAMAGISVVGRDHYGVFPLRGKLLNVREASHKQ 491

Query: 359  IMDNAEIQNIKQILGLQHGKEYDSAKGLRYGHLMIMTDQDHDGSHIKGLLINFIHTFWPS 538
            + +N EI+ IK+ILGLQ GKEYDS K LRYGHLMIMTDQDHDGSHIKGLLINFIHTFWPS
Sbjct: 492  VSENKEIEAIKKILGLQTGKEYDSVKSLRYGHLMIMTDQDHDGSHIKGLLINFIHTFWPS 551

Query: 539  LLKVPSFMVEFITPLLKATNNRTKTVLSFYSMPEFEAWKESLGGNSNGWSIKYYKGLGTS 718
            LLKVPSF++EFITP++KAT+   K +LSFY+MPE+E+W++SLG NS+GWSIKYYKGLGTS
Sbjct: 552  LLKVPSFLIEFITPIVKATHKSGK-ILSFYTMPEYESWRKSLGANSSGWSIKYYKGLGTS 610

Query: 719  KSEEGKEYFRNIGMHKKEFVWMDAQDGESIELAFSKKKIEARKNWLRQFEPENYLDQSET 898
             S+EGKEYF+++  H+K+F+W D QDGESIELAFSKKKIEARKNWLRQFEP  +LDQ E 
Sbjct: 611  TSKEGKEYFQDLQKHRKDFIWADNQDGESIELAFSKKKIEARKNWLRQFEPGTHLDQKEK 670

Query: 899  LIKYSDFINKELILFSRADLQRSIPSMVDGLKPGQRKILFCAFKRNFVKQAKVAQFIGYV 1078
             I Y++F+NKELILFS ADLQRSIPSM+DGLKPGQRKILFCAFKRNFVK+AKV+QF GYV
Sbjct: 671  YISYTEFVNKELILFSMADLQRSIPSMLDGLKPGQRKILFCAFKRNFVKEAKVSQFSGYV 730

Query: 1079 SENSAYHHGEQSLATTIIAMAQDFVGSNNINLLQPEGQFGTRHQGGKDHASARYIFTCLA 1258
            SE+SAYHHGEQSL++TII MAQD+VGSNN+NLLQP GQFGTR+ GGKDHAS+RYI+T L+
Sbjct: 731  SEHSAYHHGEQSLSSTIIGMAQDYVGSNNVNLLQPNGQFGTRNMGGKDHASSRYIYTRLS 790

Query: 1259 PITRFLFPKDDDILLDYLNEDGQSIEPSWYMPIIPLVLVNGSEGIGTGWSSYIPNYNPKD 1438
            PI RFLFPK+DD + DYLNEDGQ IEP+WY+PI+P+VL+NGSEGIGTGWSSY+PNYNP+D
Sbjct: 791  PIARFLFPKEDDTIHDYLNEDGQYIEPTWYVPIVPMVLINGSEGIGTGWSSYVPNYNPRD 850

Query: 1439 IVANVKRLLNNEPMQPMDPWYRGFKGRIEKSATKEGGLTYTITGLIEEIDSTTLRVTELP 1618
            +VANV+RLLN+EPM+PMDPWY+GFKG IEK+ATKE G TYT+TG+IEE++ TTLR++ELP
Sbjct: 851  LVANVRRLLNDEPMEPMDPWYKGFKGTIEKTATKEAGATYTVTGIIEEVNETTLRISELP 910

Query: 1619 VRRWTQDYKEFLESSMTGNDKIKEPFIKDYREHNDDKTVHFEVSVTEENMNIARQEGLEK 1798
            VRRWT+DYK+FLES    NDK K+PFIK+ R + D+ +V FEV ++EEN+ +A+QEGL K
Sbjct: 911  VRRWTEDYKQFLESMTVSNDKAKDPFIKEVRAYGDENSVCFEVIMSEENLILAQQEGLLK 970

Query: 1799 KFKLTTTISTTNMHLFDSKSVIKKYDSPEQILEEFFALRFVYYEKRXXXXXXXXXXXXXX 1978
            KFKL TTIST+NMHLFDS   IKKYD+PE ILEEF+ +R  YYEKR              
Sbjct: 971  KFKLATTISTSNMHLFDSNGKIKKYDNPEDILEEFYHVRLEYYEKRKKALLEILELELLR 1030

Query: 1979 XXXXXRFILGVVRDEIVVNKRKRADLFLELQQKGFTPFPKKTKGIDAAVAGASEEDGEQE 2158
                 +FILGVV+ EI+VN RKRADL LEL++KGFTPFPKK K ++A VA  S+   + E
Sbjct: 1031 IENKVKFILGVVKVEIIVNNRKRADLLLELKEKGFTPFPKK-KAVEAVVADTSD---DAE 1086

Query: 2159 ESPQPGKGGALASDYDYLMSMRIDSLTEEKVQELCAQKEKLEAEVDELRRTSPQTXXXXX 2338
            +S +    G  A DYDYL+SM I +LT EKVQELCA++++L  EV+++R  +P+      
Sbjct: 1087 DSEEELNRGVRAGDYDYLLSMPIGTLTLEKVQELCAERDQLNGEVEDMRNATPKLLWLKD 1146

Query: 2339 XXXXXXXXXXXXXXXXXAEGARKEMRMNHIAGVAPSKQGAKKPRKNTANKLSVSATTTD- 2515
                             AE AR++++   +   A  K    KPRKN   K SV  +T + 
Sbjct: 1147 LDVLEKQLDEQDKIDIQAEEAREKIK-KKVMNAAGLKAPKPKPRKN-VKKASVVESTAEP 1204

Query: 2516 ------------------------AGGQXXXXXXXXXXQTVEESDEDEEILALKDRLAAY 2623
                                     G +             EE +ED+E+LALKDRLAAY
Sbjct: 1205 MDRVSCFNSGNRSNVTEVVKPKARGGSKKAPAKAKPIAVEDEEEEEDDEVLALKDRLAAY 1264

Query: 2624 NLDSSPDNG--AMETDTVVSDQGKAKKQPSRNAAAKKAT-------------YALSSDED 2758
            NL+SSPD+   AMET+   +     KK P+R AAAKK T               +S D++
Sbjct: 1265 NLNSSPDHSAEAMETEAPKAQ----KKAPTRKAAAKKKTLPSIADVSEGEDEIEISDDDE 1320

Query: 2759 DEPEQQQRLMPTIXXXXXXXXXXXXXXXXGRKPKNETAKAT--------RKRG------- 2893
             EPE                         GRKP   TAKA         +KRG       
Sbjct: 1321 SEPE----------------VAVGGKKKGGRKP--ATAKAAPAAAKQPPKKRGPANKQAV 1362

Query: 2894 ------------PAQASKATTTSQKVRKMRASPFNKKSGSVLSKPR------NEDXXXXX 3019
                        PA+ +  ++  +KVRKMRASPFN+KSG+VL K +      NED     
Sbjct: 1363 GIGQKLITSILKPAENTDNSSPEKKVRKMRASPFNEKSGAVLGKNKGSTLQENEDASPVS 1422

Query: 3020 XXXXXXXXXXR--TRPK-RESRTKAAVYVESDS 3109
                           PK R +R K   YV SDS
Sbjct: 1423 SLGSLEDEVNEAVVAPKARVTRGKKTTYVISDS 1455


>ref|XP_004229644.1| PREDICTED: DNA topoisomerase 2-like [Solanum lycopersicum]
          Length = 1477

 Score = 1203 bits (3113), Expect = 0.0
 Identities = 627/1037 (60%), Positives = 764/1037 (73%), Gaps = 41/1037 (3%)
 Frame = +2

Query: 2    LTTRQGSLGSKCELSQDFLKKVAKS-GVVNTLLTWADFKQSKELKKTDGAKRQRITGIPK 178
            LT RQ S GSKCEL  DFLKKV K+ G+V++LL+WADFK SK+LKKTDG K  ++  + K
Sbjct: 374  LTLRQSSFGSKCELQPDFLKKVEKNIGIVDSLLSWADFKLSKDLKKTDGKKSDKVK-VEK 432

Query: 179  LEDANDAGGRNSDKCTLILTEGDSAKALAMSGISVVGRNYYGVFPLRGKLLNVREANHKQ 358
            LEDANDAGGRNSDKCTLILTEGDSAKALAM+GISVVGR++YGVFPLRGKLLNVREA+HKQ
Sbjct: 433  LEDANDAGGRNSDKCTLILTEGDSAKALAMAGISVVGRDHYGVFPLRGKLLNVREASHKQ 492

Query: 359  IMDNAEIQNIKQILGLQHGKEYDSAKGLRYGHLMIMTDQDHDGSHIKGLLINFIHTFWPS 538
            + +N EI++IK+ILGLQ GKEYDS K LRYGHLMIMTDQDHDGSHIKGLLINFIHTFWPS
Sbjct: 493  VSENKEIESIKKILGLQTGKEYDSVKSLRYGHLMIMTDQDHDGSHIKGLLINFIHTFWPS 552

Query: 539  LLKVPSFMVEFITPLLKATNNRTKTVLSFYSMPEFEAWKESLGGNSNGWSIKYYKGLGTS 718
            LLKVPSF+VEFITP++KAT+ ++  +L+FY+MPE+EAW+ SLG  S+GWSIKYYKGLGTS
Sbjct: 553  LLKVPSFLVEFITPIVKATH-KSGRILAFYTMPEYEAWRRSLGATSSGWSIKYYKGLGTS 611

Query: 719  KSEEGKEYFRNIGMHKKEFVWMDAQDGESIELAFSKKKIEARKNWLRQFEPENYLDQSET 898
             S+EGKEYF+++  H+K+FVW D QDGESIELAFSKKKIEARKNWLRQFEP  +LDQ E 
Sbjct: 612  TSKEGKEYFQDLQKHRKDFVWADNQDGESIELAFSKKKIEARKNWLRQFEPGTHLDQKEK 671

Query: 899  LIKYSDFINKELILFSRADLQRSIPSMVDGLKPGQRKILFCAFKRNFVKQAKVAQFIGYV 1078
             I Y++F+NKELILFS ADLQRSIPSM+DGLKPGQRKILFCAFKRNFVK+AKV+QF GYV
Sbjct: 672  YISYTEFVNKELILFSMADLQRSIPSMLDGLKPGQRKILFCAFKRNFVKEAKVSQFSGYV 731

Query: 1079 SENSAYHHGEQSLATTIIAMAQDFVGSNNINLLQPEGQFGTRHQGGKDHASARYIFTCLA 1258
            SE+SAYHHGEQSL++TII MAQD+VGSNN+NLLQP GQFGTR+ GGKDHAS+RYI+T L+
Sbjct: 732  SEHSAYHHGEQSLSSTIIGMAQDYVGSNNVNLLQPNGQFGTRNMGGKDHASSRYIYTRLS 791

Query: 1259 PITRFLFPKDDDILLDYLNEDGQSIEPSWYMPIIPLVLVNGSEGIGTGWSSYIPNYNPKD 1438
            PI RFLFPKDDD +LDYLNEDGQSIEP+WY+P+IP VLVNGSEGIGTGWSSY+PNYNP+D
Sbjct: 792  PIARFLFPKDDDTILDYLNEDGQSIEPTWYVPVIPTVLVNGSEGIGTGWSSYVPNYNPRD 851

Query: 1439 IVANVKRLLNNEPMQPMDPWYRGFKGRIEKSATKEGGLTYTITGLIEEIDSTTLRVTELP 1618
            +VANV+RLLN+E M+PMDPWY+GFKG+IEK+ATKE G TYT+TG+IEE+  TTLR++ELP
Sbjct: 852  LVANVRRLLNDELMEPMDPWYKGFKGKIEKTATKETGATYTVTGIIEEVSETTLRISELP 911

Query: 1619 VRRWTQDYKEFLESSMTGNDKIKEPFIKDYREHNDDKTVHFEVSVTEENMNIARQEGLEK 1798
            VRRWT+DYK+FLES     DK K+ FIK+ R + D+ +V FEV ++E+N+ +A+QEGL K
Sbjct: 912  VRRWTEDYKQFLESMTVSTDKAKDSFIKEVRAYGDENSVCFEVIMSEDNLLLAQQEGLLK 971

Query: 1799 KFKLTTTISTTNMHLFDSKSVIKKYDSPEQILEEFFALRFVYYEKRXXXXXXXXXXXXXX 1978
            KFKLTTTIST+NMHLFDSK  IKKYD+PE+ILEEF+ +R  YYEKR              
Sbjct: 972  KFKLTTTISTSNMHLFDSKGKIKKYDAPEEILEEFYHVRLEYYEKRKKALLEILELELLR 1031

Query: 1979 XXXXXRFILGVVRDEIVVNKRKRADLFLELQQKGFTPFPKKTKGIDAAVAGASEEDGEQE 2158
                 +FILGVV+ EI+VN RKRA+L LEL+ KGFTPFPKK K ++A VA ++++  + E
Sbjct: 1032 IENKVKFILGVVKGEIIVNNRKRAELLLELKNKGFTPFPKK-KPVEAVVADSTDDADDSE 1090

Query: 2159 ESPQPGKGGALASDYDYLMSMRIDSLTEEKVQELCAQKEKLEAEVDELRRTSPQTXXXXX 2338
            ESP+    G  ASDYDYL+SM I +LT EKVQELCA ++KL AEV+++R  +P+      
Sbjct: 1091 ESPEESSRGVRASDYDYLLSMAIGTLTLEKVQELCADRDKLNAEVEDMRNATPKHLWMKD 1150

Query: 2339 XXXXXXXXXXXXXXXXXAEGARKEMR---MNHIAGVAPSKQGAK--KPRKNTANKLSVS- 2500
                              E AR++++   MN     AP  +  K  K  ++TA  + VS 
Sbjct: 1151 LDVLDKQLDEQDKIDIQTEEAREKLKKKVMNAAGKAAPKPKPRKTNKKAESTAESMDVSF 1210

Query: 2501 ATTTDAGGQXXXXXXXXXXQ-------TVEESDEDEEILALKDRLAAYNLDSSPDNGAME 2659
             +T +              +        VE+ +E++E+LALKDRLAAYNL+SSPD   + 
Sbjct: 1211 GSTAETANVSEVVKPKGRGRPAKAKPIVVEDEEEEDEVLALKDRLAAYNLNSSPDRSEVT 1270

Query: 2660 TDTVVSDQGKAKKQPSRNAAAKK----ATYALSSDEDDEPEQQQRLMPTIXXXXXXXXXX 2827
               V   Q KA   P++ AAA+K    +T  +S  ED          P            
Sbjct: 1271 ETEVPKAQTKA---PAKRAAAQKKALPSTPDVSDGEDAIEIDDDEFEPA--------AAV 1319

Query: 2828 XXXXXXGRKPKNETAKATRKRGPAQASKATTTSQ-----------------------KVR 2938
                  GRKP    A A  K  P + + A   SQ                       KVR
Sbjct: 1320 GGKKKGGRKPAAAKAAAAPK-PPGKKAPANNQSQSVGQRLITQVLKPAEDAGVSPDRKVR 1378

Query: 2939 KMRASPFNKKSGSVLSK 2989
            KMRASPFNKKSG+V+ K
Sbjct: 1379 KMRASPFNKKSGAVMGK 1395


>ref|XP_006482851.1| PREDICTED: DNA topoisomerase 2-like [Citrus sinensis]
          Length = 1456

 Score = 1198 bits (3100), Expect = 0.0
 Identities = 648/1084 (59%), Positives = 778/1084 (71%), Gaps = 48/1084 (4%)
 Frame = +2

Query: 2    LTTRQGSLGSKCELSQDFLKKV-AKSGVVNTLLTWADFKQSKELKKTDGAKRQRITGIPK 178
            LT RQ S GSKCELS++FLKKV AKSG+V TLL+WA+FKQSK+LKK DG K + + GI K
Sbjct: 372  LTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDLKKNDGTKTEDVRGISK 431

Query: 179  LEDANDAGGRNSDKCTLILTEGDSAKALAMSGISVVGRNYYGVFPLRGKLLNVREANHKQ 358
            L+DAN AGGRNS++CTLILTEGDSAKALAM+G+SVVGR+ +GVFPLRGKLLNVREA+  Q
Sbjct: 432  LDDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQ 491

Query: 359  IMDNAEIQNIKQILGLQHGKEYDSAKGLRYGHLMIMTDQDHDGSHIKGLLINFIHTFWPS 538
            +++N+EI NIK+ILGL+ G EY++ K LRYGHLMIMTDQDHDGSHIKGLLINFIH+FWPS
Sbjct: 492  VLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQDHDGSHIKGLLINFIHSFWPS 551

Query: 539  LLKVPSFMVEFITPLLKATNNRTKTVLSFYSMPEFEAWKESLGGNSNGWSIKYYKGLGTS 718
            LLK+PSF+VEFITP++KATN   K VLSFYSMP++EAWKESLGGN++ WSIKYYKGLGTS
Sbjct: 552  LLKIPSFLVEFITPIVKATNKNGK-VLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTS 610

Query: 719  KSEEGKEYFRNIGMHKKEFVWMDAQDGESIELAFSKKKIEARKNWLRQFEPENYLDQSET 898
             S+EGKEYF+NI +HKK+FVW D QDGE+IELAFSKKKIEARK WL QFEP N+LDQ E 
Sbjct: 611  TSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSKKKIEARKKWLLQFEPGNHLDQKEK 670

Query: 899  LIKYSDFINKELILFSRADLQRSIPSMVDGLKPGQRKILFCAFKRNFVKQAKVAQFIGYV 1078
             IKYSDF+NKELILFS ADLQRSIPSMVDGLKPGQRKILFC+FKRNF+K+AKVAQF GYV
Sbjct: 671  YIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYV 730

Query: 1079 SENSAYHHGEQSLATTIIAMAQDFVGSNNINLLQPEGQFGTRHQGGKDHASARYIFTCLA 1258
            SE+SAYHHGEQSLA+TI+ MAQDFVGSNNINLLQP GQFGTR+QGGKD ASARYIFT L+
Sbjct: 731  SEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLS 790

Query: 1259 PITRFLFPKDDDILLDYLNEDGQSIEPSWYMPIIPLVLVNGSEGIGTGWSSYIPNYNPKD 1438
            PITRFLFPKDDD LLDYLNEDGQ IEP+WYMPIIP VLVNGSEGIGTGWSSYIPNYNP+D
Sbjct: 791  PITRFLFPKDDDKLLDYLNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRD 850

Query: 1439 IVANVKRLLNNEPMQPMDPWYRGFKGRIEKSATKEGGLTYTITGLIEEIDSTTLRVTELP 1618
            IVANV+RLLN E M+PM PWYRGF+G IEK+A+KE G+TYT+TG+IEE++ TTLR+ ELP
Sbjct: 851  IVANVRRLLNGEMMEPMHPWYRGFRGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELP 910

Query: 1619 VRRWTQDYKEFLESSMTGNDKIKEPFIKDYREHNDDKTVHFEVSVTEENMNIARQEGLEK 1798
            +RRWTQDY+EFLES +  ND     FI+ +R+++DD TV FEV ++EE+M   +QEGL K
Sbjct: 911  IRRWTQDYREFLESIIDQNDS----FIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLK 966

Query: 1799 KFKLTTTISTTNMHLFDSKSVIKKYDSPEQILEEFFALRFVYYEKRXXXXXXXXXXXXXX 1978
            KFKLTTTIST+NMHLFDSK VIKKYD+PEQILEEFF +R  +YEKR              
Sbjct: 967  KFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQLENLELELLK 1026

Query: 1979 XXXXXRFILGVVRDEIVVNKRKRADLFLELQQKGFTPFPKKTKGIDAAVAGASEEDGEQE 2158
                 RFILGVV  EIVVN RKR DL LEL+QKGFTPFPK +K I+A VAGA++E  E E
Sbjct: 1027 LENKVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPFPKNSKSIEAVVAGATDETEESE 1086

Query: 2159 ESPQPGKGGALASDYDYLMSMRIDSLTEEKVQELCAQKEKLEAEVDELRRTSPQTXXXXX 2338
            E+P+    G  + DYDYL+SM I +LT EKVQ L A ++KL  EVD+LR+ +P++     
Sbjct: 1087 ENPEV-VNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKD 1145

Query: 2339 XXXXXXXXXXXXXXXXXAEGARKEMRMNHIAGVAP---SKQGAKKPRKNTANKLSVSATT 2509
                             AE  R +++ N  +   P   +K+  K  RKN  +K S +A  
Sbjct: 1146 LDALDMQLDELDKSDARAEEERMKIKGNGNSDAGPKIVAKRAPKNARKN--DKKSNNARA 1203

Query: 2510 TDAGGQ-----------XXXXXXXXXXQTVEESDEDE------EILALKDRLAAYNLDSS 2638
            T+A G+                     + +++ +EDE       +  L ++LA+  L+ S
Sbjct: 1204 TEAMGEMDNVTKVVKPKGRAGLKKAPAEKLDDEEEDEVPDLKQRLAKLNEQLASTKLEPS 1263

Query: 2639 PD-NGAMETDTVVSDQGKAKKQPSRNAAAKKATYALSSDEDDEPEQQQRLMPTIXXXXXX 2815
            PD +G MET+  V    K K+   R AA KKA    +SD +DE       +         
Sbjct: 1264 PDQSGVMETEK-VQVPAKKKEPSKRTAAQKKAVTVETSDSEDE-------IIIDDDEAFE 1315

Query: 2816 XXXXXXXXXXGRKPKNET-----AKATRKRGPAQAS---------------KATTTS--Q 2929
                      GRK    T     A  T+KRGPA+                 K T +S  +
Sbjct: 1316 IAAPEAGKKGGRKAAGNTKAAKPAAETKKRGPAKKQQPEASLGQRLLTEMLKPTESSPEK 1375

Query: 2930 KVRKMRASPFNKKSGSVLSK----PRNEDXXXXXXXXXXXXXXXRTRPKRESRTKAAVYV 3097
            KVRKMRASPFNKKSGS+L +                        + RP+R +R +A  YV
Sbjct: 1376 KVRKMRASPFNKKSGSMLGRAGTIEEPSGSSPSTSEEVAEVLPPKARPQRANRRQAR-YV 1434

Query: 3098 ESDS 3109
             SDS
Sbjct: 1435 LSDS 1438


>ref|XP_006439079.1| hypothetical protein CICLE_v10030505mg [Citrus clementina]
            gi|557541275|gb|ESR52319.1| hypothetical protein
            CICLE_v10030505mg [Citrus clementina]
          Length = 1456

 Score = 1198 bits (3100), Expect = 0.0
 Identities = 648/1084 (59%), Positives = 778/1084 (71%), Gaps = 48/1084 (4%)
 Frame = +2

Query: 2    LTTRQGSLGSKCELSQDFLKKV-AKSGVVNTLLTWADFKQSKELKKTDGAKRQRITGIPK 178
            LT RQ S GSKCELS++FLKKV AKSG+V TLL+WA+FKQSK+LKK DG K + + GI K
Sbjct: 372  LTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDLKKNDGTKTEDVRGISK 431

Query: 179  LEDANDAGGRNSDKCTLILTEGDSAKALAMSGISVVGRNYYGVFPLRGKLLNVREANHKQ 358
            L+DAN AGGRNS++CTLILTEGDSAKALAM+G+SVVGR+ +GVFPLRGKLLNVREA+  Q
Sbjct: 432  LDDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQ 491

Query: 359  IMDNAEIQNIKQILGLQHGKEYDSAKGLRYGHLMIMTDQDHDGSHIKGLLINFIHTFWPS 538
            +++N+EI NIK+ILGL+ G EY++ K LRYGHLMIMTDQDHDGSHIKGLLINFIH+FWPS
Sbjct: 492  VLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQDHDGSHIKGLLINFIHSFWPS 551

Query: 539  LLKVPSFMVEFITPLLKATNNRTKTVLSFYSMPEFEAWKESLGGNSNGWSIKYYKGLGTS 718
            LLK+PSF+VEFITP++KATN   K VLSFYSMP++EAWKESLGGN++ WSIKYYKGLGTS
Sbjct: 552  LLKIPSFLVEFITPIVKATNKNGK-VLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTS 610

Query: 719  KSEEGKEYFRNIGMHKKEFVWMDAQDGESIELAFSKKKIEARKNWLRQFEPENYLDQSET 898
             S+EGKEYF+NI +HKK+FVW D QDGE+IELAFSKKKIEARK WL QFEP N+LDQ E 
Sbjct: 611  TSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSKKKIEARKKWLLQFEPGNHLDQKEK 670

Query: 899  LIKYSDFINKELILFSRADLQRSIPSMVDGLKPGQRKILFCAFKRNFVKQAKVAQFIGYV 1078
             IKYSDF+NKELILFS ADLQRSIPSMVDGLKPGQRKILFC+FKRNF+K+AKVAQF GYV
Sbjct: 671  YIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYV 730

Query: 1079 SENSAYHHGEQSLATTIIAMAQDFVGSNNINLLQPEGQFGTRHQGGKDHASARYIFTCLA 1258
            SE+SAYHHGEQSLA+TI+ MAQDFVGSNNINLLQP GQFGTR+QGGKD ASARYIFT L+
Sbjct: 731  SEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLS 790

Query: 1259 PITRFLFPKDDDILLDYLNEDGQSIEPSWYMPIIPLVLVNGSEGIGTGWSSYIPNYNPKD 1438
            PITRFLFPKDDD LLDYLNEDGQ IEP+WYMPIIP VLVNGSEGIGTGWSSYIPNYNP+D
Sbjct: 791  PITRFLFPKDDDKLLDYLNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRD 850

Query: 1439 IVANVKRLLNNEPMQPMDPWYRGFKGRIEKSATKEGGLTYTITGLIEEIDSTTLRVTELP 1618
            IVANV+RLLN E M+PM PWYRGF+G IEK+A+KE G+TYT+TG+IEE++ TTLR+ ELP
Sbjct: 851  IVANVRRLLNGEMMEPMHPWYRGFRGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELP 910

Query: 1619 VRRWTQDYKEFLESSMTGNDKIKEPFIKDYREHNDDKTVHFEVSVTEENMNIARQEGLEK 1798
            +RRWTQDY+EFLES +  ND     FI+ +R+++DD TV FEV ++EE+M   +QEGL K
Sbjct: 911  IRRWTQDYREFLESIIDQNDS----FIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLK 966

Query: 1799 KFKLTTTISTTNMHLFDSKSVIKKYDSPEQILEEFFALRFVYYEKRXXXXXXXXXXXXXX 1978
            KFKLTTTIST+NMHLFDSK VIKKYD+PEQILEEFF +R  +YEKR              
Sbjct: 967  KFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQLENLELELLK 1026

Query: 1979 XXXXXRFILGVVRDEIVVNKRKRADLFLELQQKGFTPFPKKTKGIDAAVAGASEEDGEQE 2158
                 RFILGVV  EIVVN RKR DL LEL+QKGFTPFPK +K I+A VAGA++E  E E
Sbjct: 1027 LENKVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPFPKNSKSIEAVVAGATDETEESE 1086

Query: 2159 ESPQPGKGGALASDYDYLMSMRIDSLTEEKVQELCAQKEKLEAEVDELRRTSPQTXXXXX 2338
            E+P+    G  + DYDYL+SM I +LT EKVQ L A ++KL  EVD+LR+ +P++     
Sbjct: 1087 ENPEV-VNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKD 1145

Query: 2339 XXXXXXXXXXXXXXXXXAEGARKEMRMNHIAGVAP---SKQGAKKPRKNTANKLSVSATT 2509
                             AE  R +++ N  +   P   +K+  K  RKN  +K S +A  
Sbjct: 1146 LDALDMQLDELDKSDARAEEERMKIKGNGNSDAGPKIVAKRAPKNARKN--DKKSNNARA 1203

Query: 2510 TDAGGQ-----------XXXXXXXXXXQTVEESDEDE------EILALKDRLAAYNLDSS 2638
            T+A G+                     + +++ +EDE       +  L ++LA+  L+ S
Sbjct: 1204 TEAMGEMDNVTKVVKPKGRAGLKKAPAEKLDDEEEDEVPDLKQRLAKLNEQLASTKLEPS 1263

Query: 2639 PD-NGAMETDTVVSDQGKAKKQPSRNAAAKKATYALSSDEDDEPEQQQRLMPTIXXXXXX 2815
            PD +G MET+  V    K K+   R AA KKA    +SD +DE       +         
Sbjct: 1264 PDQSGVMETEK-VQVPAKKKEPSKRTAAQKKAVTVETSDSEDE-------IIIDDDEAFE 1315

Query: 2816 XXXXXXXXXXGRKPKNETAKA-----TRKRGPAQAS---------------KATTTS--Q 2929
                      GRK    T  A     T+KRGPA+                 K T +S  +
Sbjct: 1316 IAAPEAGKKGGRKAAGNTKAAKPAVETKKRGPAKKQQPEASLGQRLLTEMLKPTESSPEK 1375

Query: 2930 KVRKMRASPFNKKSGSVLSK----PRNEDXXXXXXXXXXXXXXXRTRPKRESRTKAAVYV 3097
            KVRKMRASPFNKKSGS+L +                        + RP+R +R +A  YV
Sbjct: 1376 KVRKMRASPFNKKSGSMLGRAGTIEEPSGSSPSTSEEVAEVLPPKARPQRANRRQAR-YV 1434

Query: 3098 ESDS 3109
             SDS
Sbjct: 1435 LSDS 1438


>ref|XP_006439078.1| hypothetical protein CICLE_v10030505mg [Citrus clementina]
            gi|557541274|gb|ESR52318.1| hypothetical protein
            CICLE_v10030505mg [Citrus clementina]
          Length = 1455

 Score = 1194 bits (3089), Expect = 0.0
 Identities = 648/1084 (59%), Positives = 778/1084 (71%), Gaps = 48/1084 (4%)
 Frame = +2

Query: 2    LTTRQGSLGSKCELSQDFLKKV-AKSGVVNTLLTWADFKQSKELKKTDGAKRQRITGIPK 178
            LT RQ S GSKCELS++FLKKV AKSG+V TLL+WA+FKQSK+LKK DG K + + GI K
Sbjct: 372  LTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDLKKNDGTKTEDVRGISK 431

Query: 179  LEDANDAGGRNSDKCTLILTEGDSAKALAMSGISVVGRNYYGVFPLRGKLLNVREANHKQ 358
            L+DAN AGGRNS++CTLILTEGDSAKALAM+G+SVVGR+ +GVFPLRGKLLNVREA+  Q
Sbjct: 432  LDDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQ 491

Query: 359  IMDNAEIQNIKQILGLQHGKEYDSAKGLRYGHLMIMTDQDHDGSHIKGLLINFIHTFWPS 538
            +++N+EI NIK+ILGL+ G EY++ K LRYGHLMIMTDQDHDGSHIKGLLINFIH+FWPS
Sbjct: 492  VLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQDHDGSHIKGLLINFIHSFWPS 551

Query: 539  LLKVPSFMVEFITPLLKATNNRTKTVLSFYSMPEFEAWKESLGGNSNGWSIKYYKGLGTS 718
            LLK+PSF+VEFITP++KATN   K VLSFYSMP++EAWKESLGGN++ WSIKYYKGLGTS
Sbjct: 552  LLKIPSFLVEFITPIVKATNKNGK-VLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTS 610

Query: 719  KSEEGKEYFRNIGMHKKEFVWMDAQDGESIELAFSKKKIEARKNWLRQFEPENYLDQSET 898
             S+EGKEYF+NI +HKK+FVW D QDGE+IELAFSKKKIEARK WL QFEP N+LDQ E 
Sbjct: 611  TSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSKKKIEARKKWLLQFEPGNHLDQKEK 670

Query: 899  LIKYSDFINKELILFSRADLQRSIPSMVDGLKPGQRKILFCAFKRNFVKQAKVAQFIGYV 1078
             IKYSDF+NKELILFS ADLQRSIPSMVDGLKPGQRKILFC+FKRNF+K+AKVAQF GYV
Sbjct: 671  YIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYV 730

Query: 1079 SENSAYHHGEQSLATTIIAMAQDFVGSNNINLLQPEGQFGTRHQGGKDHASARYIFTCLA 1258
            SE+SAYHHGEQSLA+TI+ MAQDFVGSNNINLLQP GQFGTR+QGGKD ASARYIFT L+
Sbjct: 731  SEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLS 790

Query: 1259 PITRFLFPKDDDILLDYLNEDGQSIEPSWYMPIIPLVLVNGSEGIGTGWSSYIPNYNPKD 1438
            PITRFLFPKDDD LLDYLNEDGQ IEP+WYMPIIP VLVNGSEGIGTGWSSYIPNYNP+D
Sbjct: 791  PITRFLFPKDDDKLLDYLNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRD 850

Query: 1439 IVANVKRLLNNEPMQPMDPWYRGFKGRIEKSATKEGGLTYTITGLIEEIDSTTLRVTELP 1618
            IVANV+RLLN E M+PM PWYRGF+G IEK+A+KE G+TYT+TG+IEE++ TTLR+ ELP
Sbjct: 851  IVANVRRLLNGEMMEPMHPWYRGFRGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELP 910

Query: 1619 VRRWTQDYKEFLESSMTGNDKIKEPFIKDYREHNDDKTVHFEVSVTEENMNIARQEGLEK 1798
            +RRWTQDY+EFLES +  ND     FI+ +R+++DD TV FEV ++EE+M   +QEGL K
Sbjct: 911  IRRWTQDYREFLESIIDQNDS----FIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLK 966

Query: 1799 KFKLTTTISTTNMHLFDSKSVIKKYDSPEQILEEFFALRFVYYEKRXXXXXXXXXXXXXX 1978
            KFKLTTTIST+NMHLFDSK VIKKYD+PEQILEEFF +R  +YEKR              
Sbjct: 967  KFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQLENLELELLK 1026

Query: 1979 XXXXXRFILGVVRDEIVVNKRKRADLFLELQQKGFTPFPKKTKGIDAAVAGASEEDGEQE 2158
                 RFILGVV  EIVVN RKR DL LEL+QKGFTPFPK +K I+A VAGA++E  E E
Sbjct: 1027 LENKVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPFPKNSKSIEAVVAGATDETEESE 1086

Query: 2159 ESPQPGKGGALASDYDYLMSMRIDSLTEEKVQELCAQKEKLEAEVDELRRTSPQTXXXXX 2338
            E+P+    G  + DYDYL+SM I +LT EKVQ L A ++KL  EVD+LR+ +P++     
Sbjct: 1087 ENPEV-VNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPES-LWVK 1144

Query: 2339 XXXXXXXXXXXXXXXXXAEGARKEMRMNHIAGVAP---SKQGAKKPRKNTANKLSVSATT 2509
                             AE  R +++ N  +   P   +K+  K  RKN  +K S +A  
Sbjct: 1145 DLDALDMQLDLDKSDARAEEERMKIKGNGNSDAGPKIVAKRAPKNARKN--DKKSNNARA 1202

Query: 2510 TDAGGQ-----------XXXXXXXXXXQTVEESDEDE------EILALKDRLAAYNLDSS 2638
            T+A G+                     + +++ +EDE       +  L ++LA+  L+ S
Sbjct: 1203 TEAMGEMDNVTKVVKPKGRAGLKKAPAEKLDDEEEDEVPDLKQRLAKLNEQLASTKLEPS 1262

Query: 2639 PD-NGAMETDTVVSDQGKAKKQPSRNAAAKKATYALSSDEDDEPEQQQRLMPTIXXXXXX 2815
            PD +G MET+  V    K K+   R AA KKA    +SD +DE       +         
Sbjct: 1263 PDQSGVMETEK-VQVPAKKKEPSKRTAAQKKAVTVETSDSEDE-------IIIDDDEAFE 1314

Query: 2816 XXXXXXXXXXGRKPKNETAKA-----TRKRGPAQAS---------------KATTTS--Q 2929
                      GRK    T  A     T+KRGPA+                 K T +S  +
Sbjct: 1315 IAAPEAGKKGGRKAAGNTKAAKPAVETKKRGPAKKQQPEASLGQRLLTEMLKPTESSPEK 1374

Query: 2930 KVRKMRASPFNKKSGSVLSK----PRNEDXXXXXXXXXXXXXXXRTRPKRESRTKAAVYV 3097
            KVRKMRASPFNKKSGS+L +                        + RP+R +R +A  YV
Sbjct: 1375 KVRKMRASPFNKKSGSMLGRAGTIEEPSGSSPSTSEEVAEVLPPKARPQRANRRQAR-YV 1433

Query: 3098 ESDS 3109
             SDS
Sbjct: 1434 LSDS 1437


>ref|XP_004308680.1| PREDICTED: DNA topoisomerase 2-like [Fragaria vesca subsp. vesca]
          Length = 1469

 Score = 1191 bits (3082), Expect = 0.0
 Identities = 637/1087 (58%), Positives = 762/1087 (70%), Gaps = 51/1087 (4%)
 Frame = +2

Query: 2    LTTRQGSLGSKCELSQDFLKKVAKSGVVNTLLTWADFKQSKELKKTDGAKRQRITGIPKL 181
            LT R  S GSKCEL Q+FLKKVAKSGVV +LL+WA+FK +K+LKKTDG K +R+  I KL
Sbjct: 377  LTIRPSSFGSKCELPQEFLKKVAKSGVVESLLSWANFKNNKDLKKTDGTKTERLHNINKL 436

Query: 182  EDANDAGGRNSDKCTLILTEGDSAKALAMSGISVVGRNYYGVFPLRGKLLNVREANHKQI 361
            EDAN AGGRNS+KCTLILTEGDSAKALAM+G++VVGR++YGVFPLRGKLLNVREA+  Q+
Sbjct: 437  EDANLAGGRNSEKCTLILTEGDSAKALAMAGLAVVGRDHYGVFPLRGKLLNVREASTTQL 496

Query: 362  MDNAEIQNIKQILGLQHGKEYDSAKGLRYGHLMIMTDQDHDGSHIKGLLINFIHTFWPSL 541
             DN EI+NIK+ILGLQ  KEY + K LRYGHLMIMTDQDHDGSHIKGLLINFIH+FWPSL
Sbjct: 497  RDNEEIKNIKKILGLQQDKEYTNIKSLRYGHLMIMTDQDHDGSHIKGLLINFIHSFWPSL 556

Query: 542  LKVPSFMVEFITPLLKATNNRTKTVLSFYSMPEFEAWKESLGGNSNGWSIKYYKGLGTSK 721
            LKVPSF+VEFITP++KAT+   K  L+FYSMPE+EAW+ESL GN++GW+IKYYKGLGTS 
Sbjct: 557  LKVPSFLVEFITPIVKATHKNGKE-LAFYSMPEYEAWRESLRGNASGWTIKYYKGLGTST 615

Query: 722  SEEGKEYFRNIGMHKKEFVWMDAQDGESIELAFSKKKIEARKNWLRQFEPENYLDQSETL 901
            S+EG++YF+N+ MHKK+FVW+D +DGE+IELAFSKKKIE RKNWLRQFEP  +LDQ E L
Sbjct: 616  SKEGRDYFQNLDMHKKDFVWIDERDGEAIELAFSKKKIEERKNWLRQFEPGTHLDQKEKL 675

Query: 902  IKYSDFINKELILFSRADLQRSIPSMVDGLKPGQRKILFCAFKRNFVKQAKVAQFIGYVS 1081
            +KYSDF++KELI FS ADLQRSIPSMVDGLKPGQRKILFC+FKRNF+K+AKVAQF GYVS
Sbjct: 676  VKYSDFVHKELIQFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVS 735

Query: 1082 ENSAYHHGEQSLATTIIAMAQDFVGSNNINLLQPEGQFGTRHQGGKDHASARYIFTCLAP 1261
            E+SAYHHGEQSLA+TII MAQD+VGSNNIN LQP GQFGTR+ GGKDHASARYI+T L+P
Sbjct: 736  EHSAYHHGEQSLASTIIGMAQDYVGSNNINFLQPNGQFGTRNLGGKDHASARYIYTRLSP 795

Query: 1262 ITRFLFPKDDDILLDYLNEDGQSIEPSWYMPIIPLVLVNGSEGIGTGWSSYIPNYNPKDI 1441
            ITRFLFPKDDD LLDYLNEDGQSIEP+WY+PIIP VLVNGSEGIGTGWSSYIPNYNP+DI
Sbjct: 796  ITRFLFPKDDDRLLDYLNEDGQSIEPTWYVPIIPTVLVNGSEGIGTGWSSYIPNYNPRDI 855

Query: 1442 VANVKRLLNNEPMQPMDPWYRGFKGRIEKSATKEGGLTYTITGLIEEIDSTTLRVTELPV 1621
            VANV+RLLN + M PMDPWYRGF G IEK+  KE G +YT  G+IEE++ TTLR++ELP+
Sbjct: 856  VANVRRLLNGDEMVPMDPWYRGFTGFIEKT-VKETGTSYTACGIIEEVNETTLRISELPI 914

Query: 1622 RRWTQDYKEFLESSMTGNDKIKEPFIKDYREHNDDKTVHFEVSVTEENMNIARQEGLEKK 1801
            RRWTQDYKEFLES   GNDK K+PFI+ + +H+D  TV   V + EEN+  AR+EGL KK
Sbjct: 915  RRWTQDYKEFLESISQGNDKAKDPFIEGFTQHSDHSTVEILVHLPEENLMAARKEGLLKK 974

Query: 1802 FKLTTTISTTNMHLFDSKSVIKKYDSPEQILEEFFALRFVYYEKRXXXXXXXXXXXXXXX 1981
            F+LTT+I+TTNMHLFD K VIKKYD+ EQILEEFF LR  +YEKR               
Sbjct: 975  FRLTTSIATTNMHLFDPKGVIKKYDTAEQILEEFFPLRLEFYEKRKKVLLDNLELELLKM 1034

Query: 1982 XXXXRFILGVVRDEIVVNKRKRADLFLELQQKGFTPFPKKTKGIDAAVAGASEEDGEQEE 2161
                RFILGVV  EI+V+ RKRADLFLELQQKGFTPFPKKTK ++  VAGA+E+  E EE
Sbjct: 1035 ENKVRFILGVVNGEIIVSNRKRADLFLELQQKGFTPFPKKTKSVEPEVAGATEDTEETEE 1094

Query: 2162 SPQPG-KGGALASDYDYLMSMRIDSLTEEKVQELCAQKEKLEAEVDELRRTSPQTXXXXX 2338
            + +     G   SDY+YL+SM I +LT E+V+ L A ++K+  +V++LR ++P++     
Sbjct: 1095 NSETVISNGVRISDYEYLISMAIGTLTIERVEALLADRDKVNEQVNDLRGSTPKSLWLKD 1154

Query: 2339 XXXXXXXXXXXXXXXXXAEGARKEMRMNHI--AGVAPSKQGAKKPRKNT-----ANKLSV 2497
                             A+ A+++ R N I  A V    + A KPRKNT     A  +  
Sbjct: 1155 LDVLEAELNELEKSEALADEAKRKSRNNQIKNAPVGKVSKQAPKPRKNTKKVNNAEAIPE 1214

Query: 2498 SATTTD------------------AGGQXXXXXXXXXXQTV--EESDEDEEILALKDRLA 2617
            S  T+                   A G            TV   + D+DEE+L LKDRLA
Sbjct: 1215 SRETSSSSAMEIEKPPEVMKRRGVAAGSKKAPAKKQVKSTVVLSDDDDDEEMLDLKDRLA 1274

Query: 2618 AYNLDSSPDNGAMETDTVVSDQGKAKKQPSRNAAAKKATYALSSDEDDEPEQQQRLMPTI 2797
            AYNLDSSPD      +T V  +   KK+ S+ A  K        D+DD+ E +    P  
Sbjct: 1275 AYNLDSSPDK-----ETEVPLKPAQKKEASKKATLKDD----EDDDDDDFEVEIAAAPAA 1325

Query: 2798 XXXXXXXXXXXXXXXXGRKPKNETAKATRKRG-----------------------PAQAS 2908
                              KP      A +KRG                       PA  S
Sbjct: 1326 VKKGGRKPAGAAKAAAAAKP----PVAAKKRGAAAKKDTQTSSSSGQKLLTDMLKPAAES 1381

Query: 2909 KATTTSQKVRKMRASPFNKKSGSVLSKPRNEDXXXXXXXXXXXXXXXRTRPKRESRTKAA 3088
               +   KVRKMR SPFNKKSGSVLS+   ED               R RP+R +     
Sbjct: 1382 SGVSPDPKVRKMRESPFNKKSGSVLSRVNLEDEMNVSEEKTEAPAAGRARPQRAAARNRK 1441

Query: 3089 VYVESDS 3109
            + + SDS
Sbjct: 1442 MILVSDS 1448


>ref|XP_002314046.2| DNA topoisomerase family protein [Populus trichocarpa]
            gi|550331162|gb|EEE88001.2| DNA topoisomerase family
            protein [Populus trichocarpa]
          Length = 1482

 Score = 1190 bits (3079), Expect = 0.0
 Identities = 642/1103 (58%), Positives = 768/1103 (69%), Gaps = 67/1103 (6%)
 Frame = +2

Query: 2    LTTRQGSLGSKCELSQDFLKKVAKSGVVNTLLTWADFKQSKELKKTDGAKRQRITGIPKL 181
            LT RQ S GSKCELS+DFLKKVAKS +V+ LL+WA FK++KELKKTDG K  ++  +PKL
Sbjct: 375  LTLRQSSFGSKCELSEDFLKKVAKSDIVDNLLSWAKFKENKELKKTDGTKTAKVN-VPKL 433

Query: 182  EDANDAGGRNSDKCTLILTEGDSAKALAMSGI---SVVGRNYYGVFPLRGKLLNVREANH 352
            EDAN+AGGR S+KCTLILTEGDSAKALA++G+   S + RN+YGVFPLRGKLLNVREA  
Sbjct: 434  EDANEAGGRYSEKCTLILTEGDSAKALAIAGVAGLSQMERNFYGVFPLRGKLLNVREATS 493

Query: 353  KQIMDNAEIQNIKQILGLQHGKEYDSAKGLRYGHLMIMTDQDHDGSHIKGLLINFIHTFW 532
            KQ+ +N EI++IK+ILGLQH K+Y + K LRYGHLMIMTDQDHDGSHIKGLLINFIH+FW
Sbjct: 494  KQLKENKEIESIKKILGLQHDKQYSNVKSLRYGHLMIMTDQDHDGSHIKGLLINFIHSFW 553

Query: 533  PSLLKVPSFMVEFITPLLKATNNRTKTVLSFYSMPEFEAWKESLGGNSNGWSIKYYKGLG 712
            PSLLKVPSF+VEFITP++KAT+ R  TVLSFYSMPE+E WKESL GN++GWSIKYYKGLG
Sbjct: 554  PSLLKVPSFLVEFITPIVKATH-RNGTVLSFYSMPEYEYWKESLSGNASGWSIKYYKGLG 612

Query: 713  TSKSEEGKEYFRNIGMHKKEFVWMDAQDGESIELAFSKKKIEARKNWLRQFEPENYLDQS 892
            TS S+EGK+YF+N+  HKK+F+WMD  DG++IELAFSKKKIEARKNWLRQ EP  +LD +
Sbjct: 613  TSTSKEGKDYFKNLHKHKKDFLWMDELDGDAIELAFSKKKIEARKNWLRQHEPGTHLDHN 672

Query: 893  ETLIKYSDFINKELILFSRADLQRSIPSMVDGLKPGQRKILFCAFKRNFVKQAKVAQFIG 1072
            + +IKYSDFINKELILFS ADLQRSIPSMVDGLKPGQRKILFC+FKRNFVK+AKV+QF G
Sbjct: 673  QKIIKYSDFINKELILFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFVKEAKVSQFSG 732

Query: 1073 YVSENSAYHHGEQSLATTIIAMAQDFVGSNNINLLQPEGQFGTRHQGGKDHASARYIFTC 1252
            YVSE+SAYHHGEQSLA TII MAQDFVGSNNINLLQP GQFGTR  GGKDHASARYI+T 
Sbjct: 733  YVSEHSAYHHGEQSLAGTIIGMAQDFVGSNNINLLQPNGQFGTRSVGGKDHASARYIYTQ 792

Query: 1253 LAPITRFLFPKDDDILLDYLNEDGQSIEPSWYMPIIPLVLVNGSEGIGTGWSSYIPNYNP 1432
            L+PITRFLFPKDDD LL+YL+EDGQ+IEP+WYMPIIP VLVNG EGIGTGWS++IPNYNP
Sbjct: 793  LSPITRFLFPKDDDGLLNYLDEDGQTIEPTWYMPIIPTVLVNGCEGIGTGWSTFIPNYNP 852

Query: 1433 KDIVANVKRLLNNEPMQPMDPWYRGFKGRIEKSATKEGGL-TYTITGLIEEIDSTTLRVT 1609
            +D+VAN++RLLN E M+PM+PWYRGFKG IEK A+KEGG  +YT+ G+I E++ TTLR+T
Sbjct: 853  RDVVANIRRLLNGEMMEPMNPWYRGFKGTIEKGASKEGGCSSYTVNGVINEVNETTLRIT 912

Query: 1610 ELPVRRWTQDYKEFLESSMTG-----NDKIKEPFIKDYREHNDDKTVHFEVSVTEENMNI 1774
            ELP+RRWT DYK FL S   G      +  K+PF+KD+R++ DD  VHFEV ++EENM +
Sbjct: 913  ELPIRRWTDDYKAFLNSVTEGTRDENGNLPKDPFVKDFRKYGDDAAVHFEVQLSEENMLV 972

Query: 1775 ARQEGLEKKFKLTTTISTTNMHLFDSKSVIKKYDSPEQILEEFFALRFVYYEKRXXXXXX 1954
            A+QEGL KKFKLTTTIST+NMHLFDS  VIKKYD+PEQILE FF LR  YYE R      
Sbjct: 973  AKQEGLLKKFKLTTTISTSNMHLFDSAGVIKKYDNPEQILENFFHLRLEYYETRKKVLLE 1032

Query: 1955 XXXXXXXXXXXXXRFILGVVRDEIVVNKRKRADLFLELQQKGFTPFPKKTKGIDAAVAGA 2134
                         RFILGVVR EI+VN RKRADL LEL QKGF   PKK+K   A VAGA
Sbjct: 1033 NLEFELLKLENKVRFILGVVRGEIIVNNRKRADLLLELHQKGFNAIPKKSK---AVVAGA 1089

Query: 2135 SEEDGEQEESPQPGKGGALASDYDYLMSMRIDSLTEEKVQELCAQKEKLEAEVDELRRTS 2314
            +++  E E+SP     G  ASDYDYL+SM I +LT E+VQ+LCA ++KL  EVD LR+T+
Sbjct: 1090 TDDTEEAEDSPD--VSGVRASDYDYLLSMAIGTLTLERVQQLCADRDKLNGEVDSLRKTT 1147

Query: 2315 PQTXXXXXXXXXXXXXXXXXXXXXXAEGARKEMR---MNHIAGVAPSKQGAKKPRKNTAN 2485
            P+                       AE AR++++       AG   SKQ  K PRKNT  
Sbjct: 1148 PKVLWVKDLEALEMQLDMLDEYDAEAEEARRKLKGGGAKGEAGFKVSKQAPKYPRKNTKK 1207

Query: 2486 KLS--VSATTTD------------------------AGGQXXXXXXXXXXQTVEESDEDE 2587
             ++  VS  TT                         AG +            +++ DED+
Sbjct: 1208 AINEEVSVETTGTSSSFAIETASSENAAAVVKPKGRAGSKKAPAKMEKLSPVLDDFDEDD 1267

Query: 2588 EILALKDRLAAYNLDSSPDNGA-METDTVVSDQGKAKKQPSRNAAAKK---ATYALSSDE 2755
            EI +LKDRL AY LDSSP+  A METD +        + P+R  AA+K   A  ++ SD 
Sbjct: 1268 EIESLKDRLNAYRLDSSPEQSADMETDVL--------QVPARRGAARKKPLANVSVISDS 1319

Query: 2756 DDEPEQQQRLMPTIXXXXXXXXXXXXXXXXGRKPKNETAKATRKRGPAQASK-------- 2911
            +DEP         +                      +   AT++RGPA            
Sbjct: 1320 EDEPNLDDDADVEVKALPETKKKGGRKAAAANDKAAKPPAATKRRGPASQQSQGLGQKLL 1379

Query: 2912 ----------ATTTSQKVRKMRASPFNKKSGSVLSKPRNED-------XXXXXXXXXXXX 3040
                        +  +KVRK+RASPFNKKSGSVL +   ED                   
Sbjct: 1380 TEMLKPAEGAGISPEKKVRKVRASPFNKKSGSVLGRIHKEDDTGSEPMSASSSENTDVID 1439

Query: 3041 XXXRTRPKRESRTKAAVYVESDS 3109
               R RP+R +R K   YV SDS
Sbjct: 1440 VPARARPQRANR-KQTRYVLSDS 1461


>dbj|BAD07880.1| putative DNA topoisomerase II [Oryza sativa Japonica Group]
          Length = 1525

 Score = 1189 bits (3077), Expect = 0.0
 Identities = 641/1119 (57%), Positives = 771/1119 (68%), Gaps = 86/1119 (7%)
 Frame = +2

Query: 2    LTTRQGSLGSKCELSQDFLKKVAKSGVVNTLLTWADFKQSKELKKTDGAKRQRITGIPKL 181
            LTTRQ S GSKCELS DFLKKV  S +V  LL+WA+FK SKEL+KTDG+KR R+TGIPKL
Sbjct: 381  LTTRQASFGSKCELSDDFLKKVGSSAIVLNLLSWAEFKLSKELQKTDGSKRSRLTGIPKL 440

Query: 182  EDANDAGGRNSDKCTLILTEGDSAKALAMSGISVVGRNYYGVFPLRGKLLNVREANHKQI 361
            EDAN AGG++S+ CTLILTEGDSAKALAM+GISVVGR+YYGVFPLRGKLLNVREA+HKQI
Sbjct: 441  EDANGAGGKDSNNCTLILTEGDSAKALAMAGISVVGRDYYGVFPLRGKLLNVREASHKQI 500

Query: 362  MDNAEIQNIKQILGLQHGKEYDSAKGLRYGHLMIMTDQDHDGSHIKGLLINFIHTFWPSL 541
            M+NAEIQNIKQILGLQHGK+YDS KGLRYGHLMIMTDQDHDGSHIKGLLINFIH+FWPSL
Sbjct: 501  MENAEIQNIKQILGLQHGKQYDSTKGLRYGHLMIMTDQDHDGSHIKGLLINFIHSFWPSL 560

Query: 542  LKVPSFMVEFITPLLKATNNRTKT-VLSFYSMPEFEAWKESLGGNSNGWSIKYYKGLGTS 718
            +K+PSF+VEFITP++KATN R K  VL FYSMPE+E WKESLGGN++GWSIKYYKGLGTS
Sbjct: 561  IKIPSFLVEFITPIIKATNKRDKKIVLPFYSMPEYEQWKESLGGNASGWSIKYYKGLGTS 620

Query: 719  KSEEGKEYFRNIGMHKKEFVWMDAQDGESIELAFSKKKIEARKNWLRQFEPENYLDQSET 898
             S EG++YF++I  HKK+FVW + QD   IELAFSKK+I  RK WL  F+   +LD    
Sbjct: 621  TSSEGRQYFQDIAKHKKDFVWKNDQDDNDIELAFSKKRITDRKEWLTNFQSGTHLDTEGK 680

Query: 899  LIKYSDFINKELILFSRADLQRSIPSMVDGLKPGQRKILFCAFKRNFVKQAKVAQFIGYV 1078
             IKYSDFINKELI FS ADL RSIPSMVDGLKPGQRKILFC+FKRN VK+ KVAQF GYV
Sbjct: 681  YIKYSDFINKELIQFSMADLLRSIPSMVDGLKPGQRKILFCSFKRNLVKEIKVAQFSGYV 740

Query: 1079 SENSAYHHGEQSLATTIIAMAQDFVGSNNINLLQPEGQFGTRHQGGKDHASARYIFTCLA 1258
            SE+SAYHHGEQSLA+TI  MAQDFVGSNNINLLQP GQFGTR QGGKD ASARYIFT L+
Sbjct: 741  SEHSAYHHGEQSLASTITGMAQDFVGSNNINLLQPNGQFGTRDQGGKDAASARYIFTLLS 800

Query: 1259 PITRFLFPKDDDILLDYLNEDGQSIEPSWYMPIIPLVLVNGSEGIGTGWSSYIPNYNPKD 1438
            PITR +FPKDDDILL+YL+EDGQSIEP+WY+PI+P+VLVNGSEGIGTGWS++IPNYNP+D
Sbjct: 801  PITRSIFPKDDDILLNYLDEDGQSIEPTWYVPILPMVLVNGSEGIGTGWSTFIPNYNPRD 860

Query: 1439 IVANVKRLLNNEPMQPMDPWYRGFKGRIEKSATKEGGLTYTITGLIEEIDSTTLRVTELP 1618
            IVAN++RLLN+EP++PMDPWYRGFKG I+K+ TK GG++YT+TG+IE +D TTLR+TELP
Sbjct: 861  IVANLRRLLNDEPVEPMDPWYRGFKGSIQKTGTKAGGVSYTVTGIIEVVDDTTLRITELP 920

Query: 1619 VRRWTQDYKEFLESSMTGNDKIK-----------------------EPFIKDYREHNDDK 1729
            +RRW+QDYKEFL  S+ G DK K                       EPFI+ +  ++DDK
Sbjct: 921  IRRWSQDYKEFL-ISIGGTDKSKDKDKDKGKGKGKVKEKEKKEKDIEPFIEAFDTYSDDK 979

Query: 1730 TVHFEVSVTEENMNIARQEGLEKKFKLTTTISTTNMHLFDSKSVIKKYDSPEQILEEFFA 1909
             V F +++++ENM IA QEGLEKKFKLTTTI TTNMHLFDS   I+KYD+PE IL+EFF 
Sbjct: 980  NVEFLITLSKENMAIALQEGLEKKFKLTTTIGTTNMHLFDSNGKIRKYDTPEDILKEFFG 1039

Query: 1910 LRFVYYEKRXXXXXXXXXXXXXXXXXXXRFILGVVRDEIVVNKRKRADLFLELQQKGFTP 2089
            LR  +YEKR                   RFIL VV  +I+VN RKRA+LF+EL+QKGF P
Sbjct: 1040 LRLEFYEKRKRVLLENIELELKKLSNKVRFILAVVEGDIIVNNRKRAELFVELKQKGFDP 1099

Query: 2090 FPKKTKGIDAAVAGASEEDGEQEESPQPGKGGALASDYDYLMSMRIDSLTEEKVQELCAQ 2269
            FP+K +    +  GA EED E EESP+    G  +SDY+YL+SM I +LT E+VQ+L A+
Sbjct: 1100 FPRKKQRAGPSAVGAIEEDEENEESPEAANVG--SSDYEYLLSMAIGTLTLERVQQLIAE 1157

Query: 2270 KEKLEAEVDELRRTSPQTXXXXXXXXXXXXXXXXXXXXXXAEGARKEMRMNHIAGVAPSK 2449
            K ++E EV EL+RT P++                          R+  R N   G AP+K
Sbjct: 1158 KGRMENEVAELKRTRPKSLWMRDLDAFEKELDALDEKDSMDAEERRATR-NAGGGAAPNK 1216

Query: 2450 QGAKK-----------------------------PRKNTANKLSVSATTTDAGGQXXXXX 2542
               K+                             PRK  A K S++ +  +         
Sbjct: 1217 AAPKRRPRKTATNTQAAESSDGNAAAPAVPKPAAPRKKPAGKASLADSEDEDYIAAIPKP 1276

Query: 2543 XXXXXQTVEES------DEDEEILALKDRLAAYNLDSSPDNGAMETDTVVSDQGKAK--- 2695
                 Q  +++      DED+E+LALKDRLAAYNLD   ++ AMET+T   +Q K K   
Sbjct: 1277 AAQKKQPAKKASTQLSDDEDDEVLALKDRLAAYNLDDHSEDTAMETET-TEEQAKGKKGR 1335

Query: 2696 KQPSRNAAAKKATYALSSDEDDEPEQQQRLMPTIXXXXXXXXXXXXXXXXGRKPKNETAK 2875
            K+PS+  AAKKA  +L+   DDE E +   +                   G+KP  E  K
Sbjct: 1336 KEPSKRGAAKKAISSLAVISDDE-EDETVPIDEDDEDDFAMEEVPVKKGRGKKPAAEKPK 1394

Query: 2876 -ATRKRGPAQ-------------------ASKATTTSQKVRKMRASPFNKKSGSVLSK-- 2989
             ATRKR PAQ                   ++ A +  +KVRKMRASPF+KKSGSVL +  
Sbjct: 1395 AATRKRAPAQGKSMRQKVMEEMFKPTEDSSTSAPSPEKKVRKMRASPFHKKSGSVLQRAS 1454

Query: 2990 --PRNEDXXXXXXXXXXXXXXXRTRPKRESRTKAAVYVE 3100
                + +                 RPKR++R     Y E
Sbjct: 1455 TASTSTEETESSSPSGSSAEPVAARPKRQTRGNKKSYQE 1493


>ref|XP_002298421.2| DNA topoisomerase family protein [Populus trichocarpa]
            gi|550348289|gb|EEE83226.2| DNA topoisomerase family
            protein [Populus trichocarpa]
          Length = 1485

 Score = 1185 bits (3065), Expect = 0.0
 Identities = 649/1110 (58%), Positives = 769/1110 (69%), Gaps = 74/1110 (6%)
 Frame = +2

Query: 2    LTTRQGSLGSKCELSQDFLKKVAKSGVVNTLLTWADFKQSKELKKTDGAKRQRITGIPKL 181
            LT RQ S GSKCELS+DFLKKVAKS +V+ LL+WA FK+SKELKKTDG K  ++  +PKL
Sbjct: 376  LTLRQSSFGSKCELSEDFLKKVAKSDIVDNLLSWAKFKESKELKKTDGTKTAKVN-VPKL 434

Query: 182  EDANDAGGRNSDKCTLILTEGDSAKALAMSGISVVG---RNYYGVFPLRGKLLNVREANH 352
            EDAN+AGGR S+KCTLILTEGDSAKALA++G++ +    R++YGVFPLRGKLLNVREA  
Sbjct: 435  EDANEAGGRYSEKCTLILTEGDSAKALAVTGVAGLTQTERSFYGVFPLRGKLLNVREATP 494

Query: 353  KQIMDNAEIQNIKQILGLQHGKEYDSAKGLRYGHLMIMTDQ-------------DHDGSH 493
            KQ+ +N EI+ IK+ILGLQH K+Y + K LRYGHLMIMTDQ             DHDGSH
Sbjct: 495  KQLKENKEIECIKKILGLQHHKQYSNVKSLRYGHLMIMTDQAKERFANFLCFKQDHDGSH 554

Query: 494  IKGLLINFIHTFWPSLLKVPSFMVEFITPLLKATNNRTKTVLSFYSMPEFEAWKESLGGN 673
            IKGLLINF+H+FWPSLLKVPSF+VEFITP++KAT+ R  TVLSFYSMPE+E+WK SL GN
Sbjct: 555  IKGLLINFLHSFWPSLLKVPSFLVEFITPIVKATH-RNGTVLSFYSMPEYESWKGSLAGN 613

Query: 674  SNGWSIKYYKGLGTSKSEEGKEYFRNIGMHKKEFVWMDAQDGESIELAFSKKKIEARKNW 853
            ++GWSIKYYKGLGTS S+EGK YF+++  HKK+F+WMD QDG++IELAFSKKKIEARKNW
Sbjct: 614  ASGWSIKYYKGLGTSTSKEGKAYFQSLDKHKKDFIWMDEQDGDAIELAFSKKKIEARKNW 673

Query: 854  LRQFEPENYLDQSETLIKYSDFINKELILFSRADLQRSIPSMVDGLKPGQRKILFCAFKR 1033
            LRQ+EP  +LDQ++ LIKYSDFINKELILFS ADLQRSIPSMVDGLKPGQRKILFC+FKR
Sbjct: 674  LRQYEPGTHLDQNQKLIKYSDFINKELILFSMADLQRSIPSMVDGLKPGQRKILFCSFKR 733

Query: 1034 NFVKQAKVAQFIGYVSENSAYHHGEQSLATTIIAMAQDFVGSNNINLLQPEGQFGTRHQG 1213
            NFVK+AK++QF GYVSE+SAYHHGEQSLA+TII MAQDFVGSNNINLL P GQFGTR  G
Sbjct: 734  NFVKEAKISQFSGYVSEHSAYHHGEQSLASTIIGMAQDFVGSNNINLLLPNGQFGTRSVG 793

Query: 1214 GKDHASARYIFTCLAPITRFLFPKDDDILLDYLNEDGQSIEPSWYMPIIPLVLVNGSEGI 1393
            GKDHASARYI+T L+PITRFLFPKDDD LLDYL+EDGQ+IEP+WYMPIIP+VLVNG EGI
Sbjct: 794  GKDHASARYIYTQLSPITRFLFPKDDDGLLDYLDEDGQTIEPNWYMPIIPMVLVNGCEGI 853

Query: 1394 GTGWSSYIPNYNPKDIVANVKRLLNNEPMQPMDPWYRGFKGRIEKSATKEGGLTYTITGL 1573
            GTGWS++IPNYNP+DIVAN++RLLN E M+PM+PWYRGFKG IEK A+KE G +YT+ G+
Sbjct: 854  GTGWSTFIPNYNPRDIVANIRRLLNGEMMEPMNPWYRGFKGTIEKGASKEAGCSYTVNGV 913

Query: 1574 IEEIDSTTLRVTELPVRRWTQDYKEFLESSMTGN-----DKIKEPFIKDYREHNDDKTVH 1738
            I E++ TTLR+TELP+RRWT DYK FL S   GN     +  K+PFIKD+R++ DD TV 
Sbjct: 914  INEVNETTLRITELPIRRWTDDYKAFLNSVTEGNRDENGNLPKDPFIKDFRKYGDDATVV 973

Query: 1739 FEVSVTEENMNIARQEGLEKKFKLTTTISTTNMHLFDSKSVIKKYDSPEQILEEFFALRF 1918
            FEV ++EENM IA+QEGL KKFKLTTTIST+NMHLFDS  VIKKYD+PEQILEEFF LR 
Sbjct: 974  FEVLLSEENMMIAKQEGLLKKFKLTTTISTSNMHLFDSAGVIKKYDNPEQILEEFFHLRL 1033

Query: 1919 VYYEKRXXXXXXXXXXXXXXXXXXXRFILGVVRDEIVVNKRKRADLFLELQQKGFTPFPK 2098
             YYE+R                   RFILGVVR EI+VN RKRADLFLEL QKGFTP PK
Sbjct: 1034 EYYERRKKVLLENLEFELLKLENKVRFILGVVRGEIIVNNRKRADLFLELHQKGFTPIPK 1093

Query: 2099 KTKGIDAAVAGASEEDGEQEESPQPGKGGALASDYDYLMSMRIDSLTEEKVQELCAQKEK 2278
            K+K   A VAGA+++  E E+S +    G  ASDYDYL+SM I +LT EKVQ+LCA  +K
Sbjct: 1094 KSK---AVVAGATDDKDEAEDSLE--VSGVRASDYDYLLSMAIGTLTLEKVQQLCADHDK 1148

Query: 2279 LEAEVDELRRTSPQTXXXXXXXXXXXXXXXXXXXXXXAEGARKEMR--MNHIAGVAPSKQ 2452
            L  EVD LR+T+P                        AE ARK+++   N  AG   SKQ
Sbjct: 1149 LNGEVDNLRKTTPIVLWVKDLEALEMQLDVLDKYDAEAEEARKKLKGDANGEAGFKVSKQ 1208

Query: 2453 GAKKPRK------------NTANKLSVSATTTD-----------AGGQXXXXXXXXXXQT 2563
              K PRK             T  K S SA  T+           AG +            
Sbjct: 1209 APKNPRKYTKKAINEEVSVETMGKASSSAMETENAAEVVKPKGRAGSRKAPAKKQEKPSP 1268

Query: 2564 VEESDEDEEILALKDRLAAYNLDSSPDNGA-METDTVVSDQGKAKKQPSRNAAAKKATYA 2740
            +  SDED+EI +LKDRL AY LDSSP+  A MET+ +    G       R AA KK   A
Sbjct: 1269 I--SDEDDEIESLKDRLKAYRLDSSPEQSADMETEVLRVPAG-------RKAARKKPLAA 1319

Query: 2741 LS--SDEDDEPEQQQRLMPTIXXXXXXXXXXXXXXXXGRKPKNETAKATRKRGPAQ---- 2902
            +S  SD +DEP+        +                      +   AT++RGPA     
Sbjct: 1320 VSVISDSEDEPDLDDDFDVQVKAVPETKKKGGRKAAAANDKAAKPPAATKRRGPASKQSQ 1379

Query: 2903 --------------ASKATTTSQKVRKMRASPFNKKSGSVLSKPRNED-------XXXXX 3019
                               +  +KVRKMRASPFNKKSGS+L      D            
Sbjct: 1380 GLGQQLLTEMLKPAEESGISPEKKVRKMRASPFNKKSGSLLGGIHKGDDTGIETMPASTS 1439

Query: 3020 XXXXXXXXXXRTRPKRESRTKAAVYVESDS 3109
                      + RP+R +R K   YV SDS
Sbjct: 1440 ENADVIDVPAKARPQRANR-KQTTYVLSDS 1468


>gb|EMJ21781.1| hypothetical protein PRUPE_ppa000202mg [Prunus persica]
          Length = 1471

 Score = 1183 bits (3060), Expect = 0.0
 Identities = 627/1044 (60%), Positives = 756/1044 (72%), Gaps = 48/1044 (4%)
 Frame = +2

Query: 2    LTTRQGSLGSKCELSQDFLKKVAKSGVVNTLLTWADFKQSKELKKTDGAKRQRITGIPKL 181
            LT R  S GSKCEL+  FL KVAKSG+V++LL+WA+FKQ+K+LKKTDG K +R+  I KL
Sbjct: 380  LTIRPNSFGSKCELTPAFLTKVAKSGIVDSLLSWANFKQNKDLKKTDGTKTERVHNINKL 439

Query: 182  EDANDAGGRNSDKCTLILTEGDSAKALAMSGISVVGRNYYGVFPLRGKLLNVREANHKQI 361
            EDAN AGG+NS+KCTLILTEGDSAKALAM+G++VVGR++YGVFPLRGKLLNVREA+  Q+
Sbjct: 440  EDANLAGGKNSEKCTLILTEGDSAKALAMAGLAVVGRDHYGVFPLRGKLLNVREASAIQV 499

Query: 362  MDNAEIQNIKQILGLQHGKEYDSAKGLRYGHLMIMTDQDHDGSHIKGLLINFIHTFWPSL 541
             DN EI+NIK+ILGLQ  KEY S K LRYG LMIMTDQDHDGSHIKGLLINFIH+FWPSL
Sbjct: 500  RDNEEIKNIKRILGLQQDKEYTSLKSLRYGSLMIMTDQDHDGSHIKGLLINFIHSFWPSL 559

Query: 542  LKVPSFMVEFITPLLKATNNRTKTVLSFYSMPEFEAWKESLGGNSNGWSIKYYKGLGTSK 721
            LK+PSF+VEFITP++KAT+   K+ L+FYSMPE+EAWKESL GN++GWSIKYYKGLGTS 
Sbjct: 560  LKIPSFLVEFITPIVKATHKNGKS-LAFYSMPEYEAWKESLRGNASGWSIKYYKGLGTST 618

Query: 722  SEEGKEYFRNIGMHKKEFVWMDAQDGESIELAFSKKKIEARKNWLRQFEPENYLDQSETL 901
            S+EG++YF+N+ MHKK+F+W+D +DGE+IELAFSKKKIE RKNWLRQFEP  +LDQ E L
Sbjct: 619  SKEGRDYFQNLAMHKKDFIWIDERDGEAIELAFSKKKIEERKNWLRQFEPSVHLDQKEKL 678

Query: 902  IKYSDFINKELILFSRADLQRSIPSMVDGLKPGQRKILFCAFKRNFVKQAKVAQFIGYVS 1081
            IKYSDF++KELI FS ADLQRSIPSMVDGLKPGQRKILFC+FKRNFVK+AKVAQF GYVS
Sbjct: 679  IKYSDFVHKELIQFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFVKEAKVAQFSGYVS 738

Query: 1082 ENSAYHHGEQSLATTIIAMAQDFVGSNNINLLQPEGQFGTRHQGGKDHASARYIFTCLAP 1261
            E+SAYHHGEQSLA+TII MAQD+VGSNNINLLQP GQFGTR+ GGKDHASARYI+T L+P
Sbjct: 739  EHSAYHHGEQSLASTIIGMAQDYVGSNNINLLQPNGQFGTRNLGGKDHASARYIYTRLSP 798

Query: 1262 ITRFLFPKDDDILLDYLNEDGQSIEPSWYMPIIPLVLVNGSEGIGTGWSSYIPNYNPKDI 1441
            ITRFLFPKDDD LLDYLNEDGQSIEP+WY+PIIP VLVNGSEGIGTGWSSYIPNYN +DI
Sbjct: 799  ITRFLFPKDDDRLLDYLNEDGQSIEPTWYVPIIPTVLVNGSEGIGTGWSSYIPNYNTRDI 858

Query: 1442 VANVKRLLNNEPMQPMDPWYRGFKGRIEKSATKEGGLTYTITGLIEEIDSTTLRVTELPV 1621
            VANV+RLLN E M PMDPWYRGF G IEK+  KE G++YT+ G+IEE + TT+R++ELP+
Sbjct: 859  VANVRRLLNGEAMVPMDPWYRGFSGTIEKTV-KESGVSYTVCGVIEEGNETTVRISELPI 917

Query: 1622 RRWTQDYKEFLESSMTGNDKIKEPFIKDYREHNDDKTVHFEVSVTEENMNIARQEGLEKK 1801
            RRWTQDYKEFLES   GNDK K+PFI+ + +H+D  TV   V + EEN+  ARQEGL KK
Sbjct: 918  RRWTQDYKEFLESISQGNDKAKDPFIEGFTQHSDHSTVDIIVHLPEENLMAARQEGLLKK 977

Query: 1802 FKLTTTISTTNMHLFDSKSVIKKYDSPEQILEEFFALRFVYYEKRXXXXXXXXXXXXXXX 1981
            FKLTT+IST+NMHLFD K VIKKYD+PEQILEEFF LR  +YEKR               
Sbjct: 978  FKLTTSISTSNMHLFDPKGVIKKYDTPEQILEEFFHLRLEFYEKRKKVLLDNLEMELLKL 1037

Query: 1982 XXXXRFILGVVRDEIVVNKRKRADLFLELQQKGFTPFPKKTKGIDAAVAGASEEDGEQEE 2161
                RFIL VV  EI+V+ R+RADLFLELQQKGFTPFPKKTK  +  VAGA E+  E EE
Sbjct: 1038 ENKVRFILAVVNGEIIVSNRRRADLFLELQQKGFTPFPKKTKAQEPEVAGAIEDTEETEE 1097

Query: 2162 SPQPGKG-GALASDYDYLMSMRIDSLTEEKVQELCAQKEKLEAEVDELRRTSPQTXXXXX 2338
            + +   G GA  SDY+YL+SM I +LT E+VQ LCA ++K+  EV ELR ++P++     
Sbjct: 1098 NSESASGNGARISDYEYLISMAIGTLTIERVQALCADRDKVNNEVAELRNSTPRSLWLKD 1157

Query: 2339 XXXXXXXXXXXXXXXXXAEGARKEMR--MNHIAGVAPSKQGAKKPRKNT--ANKLSVSAT 2506
                             AE A+K+ R  + +      S+   K PRKN   AN    +A 
Sbjct: 1158 LDALEMELGELEKSEALAEEAKKKSRNQVKNAPAAKVSRPAPKNPRKNNKKANNAEAAAE 1217

Query: 2507 TTD---------------------AGGQXXXXXXXXXXQTVEESDEDEEILALKDRLAAY 2623
            + +                     A  +            V  SD+D+E+L LKDRLAAY
Sbjct: 1218 SRETSSSFVFEMEKAPEIVKRKVGAVAKKAPAGKKQAKSAVVLSDDDDEVLELKDRLAAY 1277

Query: 2624 NLDSSPDNGAMETDTVVSDQGKAKKQPSRNAAAKKATYALSSDEDDEPEQQQRLMPTIXX 2803
            NLDSSP+N A + +T V  +   +K+PS+         A+  D+D++ E +    P    
Sbjct: 1278 NLDSSPENSAGK-ETEVPQEPVQRKEPSKR--------AMQIDDDEDFEVEIAAAPA--- 1325

Query: 2804 XXXXXXXXXXXXXXGRKPKNETAKATRKRGPA--QASKATTTS----------------- 2926
                          G    ++   A +KRG A  + S+A+++S                 
Sbjct: 1326 ----AGKKGGRKAAGTTKASKPPAAAKKRGAAANKQSQASSSSGQKLLTDMLKPVETSGV 1381

Query: 2927 ---QKVRKMRASPFNKKSGSVLSK 2989
                KVRKMRASPFNKKS SV+ K
Sbjct: 1382 SPEPKVRKMRASPFNKKSSSVMGK 1405


>ref|XP_004953539.1| PREDICTED: DNA topoisomerase 2-like [Setaria italica]
          Length = 1480

 Score = 1157 bits (2994), Expect = 0.0
 Identities = 629/1048 (60%), Positives = 739/1048 (70%), Gaps = 52/1048 (4%)
 Frame = +2

Query: 2    LTTRQGSLGSKCELSQDFLKKVAKSGVVNTLLTWADFKQSKELKKTDGAKRQRITGIPKL 181
            LTTRQGS GSKCELS +FLK V KS +V+ +L+WADFK SKELKKTDG+K+ RI+GIPKL
Sbjct: 372  LTTRQGSFGSKCELSNEFLKGVEKSSIVSNVLSWADFKLSKELKKTDGSKKSRISGIPKL 431

Query: 182  EDANDAGGRNSDKCTLILTEGDSAKALAMSGISVVGRNYYGVFPLRGKLLNVREANHKQI 361
            EDAN+AGG++S+KCTLILTEGDSAKALAM+GI+VVGR++YGVFPLRGKLLNVREANHKQI
Sbjct: 432  EDANEAGGKDSNKCTLILTEGDSAKALAMAGIAVVGRDHYGVFPLRGKLLNVREANHKQI 491

Query: 362  MDNAEIQNIKQILGLQHGKEYDSAKGLRYGHLMIMTDQDHDGSHIKGLLINFIHTFWPSL 541
            +DN EIQNIKQILGLQHGK+YDS KGLRYGHLMIMTDQDHDGSHIKGLLINFIH+FWPSL
Sbjct: 492  LDNTEIQNIKQILGLQHGKQYDSTKGLRYGHLMIMTDQDHDGSHIKGLLINFIHSFWPSL 551

Query: 542  LKVPSFMVEFITPLLKATN-NRTKTVLSFYSMPEFEAWKESLGGNSNGWSIKYYKGLGTS 718
            LKVPSF+VEFITP++KAT  N TK   SFY+MPE+E WK +LG +++ W+IKYYKGLGTS
Sbjct: 552  LKVPSFLVEFITPIIKATKKNETK---SFYTMPEYEDWKRNLGASASSWTIKYYKGLGTS 608

Query: 719  KSEEGKEYFRNIGMHKKEFVWMDAQDGESIELAFSKKKIEARKNWLRQFEPENYLDQSET 898
             S+EGK+YF NI  HKK+FVW+D QDG  IELAFSKK+I  RK WL  F+P  YLDQ E 
Sbjct: 609  TSKEGKDYFTNIDQHKKDFVWVDDQDGNEIELAFSKKRIADRKEWLTNFQPGTYLDQREK 668

Query: 899  LIKYSDFINKELILFSRADLQRSIPSMVDGLKPGQRKILFCAFKRNFVKQAKVAQFIGYV 1078
             IKY DFINKELILFS ADLQRSIPSMVDG KPGQRKILFC+FKRN VK+ KVAQF GYV
Sbjct: 669  EIKYRDFINKELILFSLADLQRSIPSMVDGFKPGQRKILFCSFKRNLVKETKVAQFSGYV 728

Query: 1079 SENSAYHHGEQSLATTIIAMAQDFVGSNNINLLQPEGQFGTRHQGGKDHASARYIFTCLA 1258
            SE+SAYHHGEQSLA+TI+ MAQ FVGSNNINLL P GQFGTR QGGKD AS RYIFT L+
Sbjct: 729  SEHSAYHHGEQSLASTIVGMAQSFVGSNNINLLYPGGQFGTRSQGGKDAASPRYIFTKLS 788

Query: 1259 PITRFLFPKDDDILLDYLNEDGQSIEPSWYMPIIPLVLVNGSEGIGTGWSSYIPNYNPKD 1438
             ITR +FPKDDD LL+YLNEDGQ IEPSWY+PI+P+VLVNGSEGIGTGWS++IPNYNP+D
Sbjct: 789  HITRSIFPKDDDTLLNYLNEDGQLIEPSWYVPILPMVLVNGSEGIGTGWSTFIPNYNPRD 848

Query: 1439 IVANVKRLLNNEPMQPMDPWYRGFKGRIEK-SATKEGGLTYTITGLIEEIDSTTLRVTEL 1615
            I AN++RLLN+E   PM PWYRGFKG I+K +  +  G TYTITG+IE +DSTTLR+TEL
Sbjct: 849  IAANIRRLLNDEATVPMHPWYRGFKGSIQKANNARVDGATYTITGIIEAVDSTTLRITEL 908

Query: 1616 PVRRWTQDYKEFLESSMTG-NDKIKEPFIKDYREHNDDKTVHFEVSVTEENMNIARQEGL 1792
            PVRRWTQDYK+F++S      +K KE FI+D     D+  V+FE+ ++E+NMNIA++EGL
Sbjct: 909  PVRRWTQDYKDFIDSLRPDEKNKDKEAFIEDCTAQGDNDDVYFELKLSEKNMNIAKEEGL 968

Query: 1793 EKKFKLTTTISTTNMHLFDSKSVIKKYDSPEQILEEFFALRFVYYEKRXXXXXXXXXXXX 1972
             KKFKLTTTI TTNMHLFDS   I+KYD+PEQILEEFF LR  +Y KR            
Sbjct: 969  LKKFKLTTTIGTTNMHLFDSDGKIRKYDTPEQILEEFFKLRLQFYFKRKEVLLQNMKLDL 1028

Query: 1973 XXXXXXXRFILGVVRDEIVVNKRKRADLFLELQQKGFTPFPKKTKGIDAAVAGASEEDGE 2152
                   RFI  VV +EIVVN RKRADLFLEL+QK F PFPKK K  + A  GA+EE+ E
Sbjct: 1029 KKLENKARFIRCVVNNEIVVNNRKRADLFLELRQKNFDPFPKKKKRAEPAAVGATEEE-E 1087

Query: 2153 QEESPQPGKGGALASDYDYLMSMRIDSLTEEKVQELCAQKEKLEAEVDELRRTSPQTXXX 2332
             EESP+    G   SDY+YL+SM I +LT EK+QEL A+KEK+  EV+EL +T+ ++   
Sbjct: 1088 NEESPE-AANGVDPSDYEYLLSMAIGTLTLEKIQELNAEKEKVVNEVEELEKTTEKSLWL 1146

Query: 2333 XXXXXXXXXXXXXXXXXXXAEGARKEMRMNHIAGVAPSKQGAKKPRKNTANKLS--VSAT 2506
                                   RK +R +  A  A SK   KK RK  A K     S T
Sbjct: 1147 RDLDAFEKDLDVLDQMDLADAQERKRLR-DENAKKAGSKAAPKKQRKKPAAKQPKVESDT 1205

Query: 2507 TTDAGGQXXXXXXXXXXQTVEES--------------------------------DEDEE 2590
              DA             +  +E+                                DEDE+
Sbjct: 1206 EGDAAEPVVAKRGAQRKKPAKENGAGSDDEDYVAEKAKAEQQKKKQSKKASAPPVDEDED 1265

Query: 2591 IL-ALKDRLAAYNL-DSSPDNGAMETDTVVSD-QGKAKKQPSRNAAAKKATYALSSDEDD 2761
             L  LK+RLAA+NL DSSPDN AMET+T      GK KK  S+    KKA+ +L+   DD
Sbjct: 1266 DLPTLKERLAAFNLNDSSPDNSAMETETTEEQIGGKGKKGVSKRGGGKKASSSLAVIHDD 1325

Query: 2762 EPEQQQRLMPTIXXXXXXXXXXXXXXXXGRKPKNETAKATRKRGPAQA------------ 2905
            E E     +                     KPK   A ATRKR PAQ             
Sbjct: 1326 EDEDVDVSLEVPEEVQGPKKGRGRKPAAPVKPK---ATATRKRAPAQGKAMMLKPTEDSN 1382

Query: 2906 SKATTTSQKVRKMRASPFNKKSGSVLSK 2989
            + A +  +KVRKMR SPFNKKSGS+L +
Sbjct: 1383 TSAPSPEKKVRKMRESPFNKKSGSILQR 1410


>ref|XP_003570162.1| PREDICTED: DNA topoisomerase 2-like [Brachypodium distachyon]
          Length = 1494

 Score = 1157 bits (2993), Expect = 0.0
 Identities = 621/1097 (56%), Positives = 749/1097 (68%), Gaps = 61/1097 (5%)
 Frame = +2

Query: 2    LTTRQGSLGSKCELSQDFLKKVAKSGVVNTLLTWADFKQSKELKKTDGAKRQRITGIPKL 181
            LTTRQGS GSKC+LS DFLKKVA SGVV+ LL+WADFK SKELKKTDG+KR  + GIPKL
Sbjct: 378  LTTRQGSFGSKCDLSDDFLKKVADSGVVSNLLSWADFKLSKELKKTDGSKRSNVLGIPKL 437

Query: 182  EDANDAGGRNSDKCTLILTEGDSAKALAMSGISVVGRNYYGVFPLRGKLLNVREANHKQI 361
            EDANDAGGR+SDKCTLILTEGDSAKALAM+G  +VG ++YGVFPLRGKLLNVREA HKQ+
Sbjct: 438  EDANDAGGRDSDKCTLILTEGDSAKALAMAGRGIVGNDHYGVFPLRGKLLNVREATHKQM 497

Query: 362  MDNAEIQNIKQILGLQHGKEYDSAKGLRYGHLMIMTDQDHDGSHIKGLLINFIHTFWPSL 541
            M+NAEIQNIK+I+GLQHGKEY+S K LRYGHLMIMTDQDHDGSHIKGLLINFIH+ WPSL
Sbjct: 498  MENAEIQNIKKIIGLQHGKEYNSTKDLRYGHLMIMTDQDHDGSHIKGLLINFIHSSWPSL 557

Query: 542  LKVPSFMVEFITPLLKATNNRTKTVLSFYSMPEFEAWKESLGGNSNGWSIKYYKGLGTSK 721
            LKVPSF+VEFITP++KATN R+K+V+SFYSMP++EAWKE LG N++ WSIKYYKGLGTS 
Sbjct: 558  LKVPSFLVEFITPIIKATNKRSKSVISFYSMPDYEAWKERLGANASAWSIKYYKGLGTST 617

Query: 722  SEEGKEYFRNIGMHKKEFVWMDAQDGESIELAFSKKKIEARKNWLRQFEPENYLDQSETL 901
            ++EG+EYF  I  H+K+FVW D +DG++IELAFSKK+I  RK+WL  ++P   LDQ E  
Sbjct: 618  ADEGREYFEKIAHHRKDFVWADDKDGDAIELAFSKKRIADRKDWLSNYQPGTCLDQREKR 677

Query: 902  IKYSDFINKELILFSRADLQRSIPSMVDGLKPGQRKILFCAFKRNFVKQAKVAQFIGYVS 1081
            IKYSDFINKELILFS ADL+RSIPSMVDGLKPGQRKILF +FKRN VK+ KVAQFIGYVS
Sbjct: 678  IKYSDFINKELILFSMADLERSIPSMVDGLKPGQRKILFSSFKRNLVKEIKVAQFIGYVS 737

Query: 1082 ENSAYHHGEQSLATTIIAMAQDFVGSNNINLLQPEGQFGTRHQGGKDHASARYIFTCLAP 1261
            E+SAYHHGEQSLA+TI+ MAQD+VGSNNI+LL+P GQFGTR+ GGKD ASARYI+T L  
Sbjct: 738  EHSAYHHGEQSLASTILGMAQDYVGSNNISLLEPRGQFGTRNSGGKDAASARYIYTRLPS 797

Query: 1262 ITRFLFPKDDDILLDYLNEDGQSIEPSWYMPIIPLVLVNGSEGIGTGWSSYIPNYNPKDI 1441
            ITR +FPKDDD+LL+YLNEDGQSIEP+WYMPIIP+VLVNGSEGIGTGWS+Y PNYNP+DI
Sbjct: 798  ITRIIFPKDDDVLLNYLNEDGQSIEPTWYMPIIPMVLVNGSEGIGTGWSTYTPNYNPRDI 857

Query: 1442 VANVKRLLNNEPMQPMDPWYRGFKGRIEKSATKEGGLTYTITGLIEEIDSTTLRVTELPV 1621
            VAN+KRLLN++P+ PMDPWY+GFKG  EK+ TK  G+TYTI+G+IE  + T L ++ELPV
Sbjct: 858  VANLKRLLNDDPIVPMDPWYKGFKGSFEKTTTKAAGVTYTISGIIEAANDTKLIISELPV 917

Query: 1622 RRWTQDYKEFLESSMTGNDKIKE-------------------------PFIKDYREHNDD 1726
            RRWT DYKEFL S    + K KE                         PF++D R   DD
Sbjct: 918  RRWTLDYKEFLLSMCPQSVKEKEKEKDKNKNKSKDKDKDKDKNKEKEPPFLEDLRSQCDD 977

Query: 1727 KTVHFEVSVTEENMNIARQEGLEKKFKLTTTISTTNMHLFDSKSVIKKYDSPEQILEEFF 1906
             +V+FE++++E+NM IA QEGLEKKFKLT T+ TTNMHLFDS   I+KYD+PE+IL+EFF
Sbjct: 978  SSVYFELTLSEKNMAIAMQEGLEKKFKLTNTMGTTNMHLFDSNGKIRKYDTPEEILQEFF 1037

Query: 1907 ALRFVYYEKRXXXXXXXXXXXXXXXXXXXRFILGVVRDEIVVNKRKRADLFLELQQKGFT 2086
             LR  +Y +R                   RFI  V+  +I VN RKRA+LFLEL++K F 
Sbjct: 1038 TLRLEFYGRRKITMLKNMRVELLKLENRVRFIRSVISGDIKVNNRKRAELFLELKEKNFD 1097

Query: 2087 PFPKKTKGIDAAVAGASEEDGEQEESPQPGKGGALASDYDYLMSMRIDSLTEEKVQELCA 2266
             FPKK    +    GA EED E EESP     G L  DY+YL+SM I +LT EKV++L A
Sbjct: 1098 AFPKKKNKTEPVAVGAEEEDEENEESPAEDTDGVLGGDYEYLLSMAIGTLTLEKVKQLIA 1157

Query: 2267 QKEKLEAEVDELRRTSPQTXXXXXXXXXXXXXXXXXXXXXXAEGARKEMRMNHIAGVAPS 2446
            QK+ L  EV+ L +T P++                      AE  R+  R         S
Sbjct: 1158 QKDNLVNEVERLSKTDPKSLWVKDLDALEKELDVLDAELKAAEEKRRLAREKSTKDGKAS 1217

Query: 2447 KQGAKKPRKNTANKLSVSATTTDAGGQXXXXXXXXXXQ--------TVEESDEDEEILAL 2602
            K   K+  K TA K   +                   Q        + +  D ++EIL L
Sbjct: 1218 KAAPKRQPKKTAAKSQKANLAGSDDEDYVAAIPKPAAQKKKPAKKASAQVKDAEDEILEL 1277

Query: 2603 KDRLAAYNLDSSPDNGAMETDTVVSDQGKAKK---QPSRNAAAKKATYALSSDEDDEPEQ 2773
            KDRLAA NLDSSP++  MET+T    + K KK   +PS   AAKKA  +L +D  DE + 
Sbjct: 1278 KDRLAASNLDSSPEHIDMETETTEGPE-KGKKGVDEPSNRGAAKKAMSSL-ADWSDEEDL 1335

Query: 2774 QQRLMPTIXXXXXXXXXXXXXXXXGRKPKNETAK-ATRKRGPAQA--------------- 2905
               +  +                 GRKP  E +K A RKR PAQ+               
Sbjct: 1336 TAPIHESEDEGFAMEEVQVEKKTRGRKPAAEKSKPAVRKRAPAQSKGMRQKVMEEIFKPT 1395

Query: 2906 ----SKATTTSQKVRKMRASPFNKKSGSVLSK-----PRNEDXXXXXXXXXXXXXXXRTR 3058
                + A +  +KVRKMRASPFNKKSGSV  +        ED               R R
Sbjct: 1396 DDSTTSAPSPVKKVRKMRASPFNKKSGSVFQRVAGASTGTEDTDAPQSGSSAEPVAPR-R 1454

Query: 3059 PKRESRTKAAVYVESDS 3109
              RE + K A+Y++S S
Sbjct: 1455 TARERKAK-AIYIDSAS 1470