BLASTX nr result
ID: Zingiber23_contig00027947
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00027947
(798 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III s... 320 3e-85
tpg|DAA37177.1| TPA: putative DNA-directed RNA polymerase family... 316 7e-84
ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III s... 313 6e-83
gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japo... 313 6e-83
ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g... 313 6e-83
ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [S... 311 2e-82
gb|EMT01541.1| DNA-directed RNA polymerase III subunit RPC1 [Aeg... 304 3e-80
gb|EMS65169.1| DNA-directed RNA polymerase III subunit rpc1 [Tri... 304 3e-80
ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III s... 293 5e-77
gb|EMT10482.1| DNA-directed RNA polymerase III subunit RPC1 [Aeg... 286 4e-75
gb|EMS65535.1| DNA-directed RNA polymerase III subunit RPC1 [Tri... 286 8e-75
ref|XP_002985715.1| hypothetical protein SELMODRAFT_446351 [Sela... 286 8e-75
ref|XP_001757221.1| predicted protein [Physcomitrella patens] gi... 281 2e-73
emb|CBI16226.3| unnamed protein product [Vitis vinifera] 279 7e-73
ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s... 279 7e-73
ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [A... 274 2e-71
gb|EXB53229.1| DNA-directed RNA polymerase III subunit RPC1 [Mor... 269 1e-69
ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III s... 268 1e-69
ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III s... 264 3e-68
ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citr... 264 3e-68
>ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Oryza
brachyantha]
Length = 1389
Score = 320 bits (821), Expect = 3e-85
Identities = 156/218 (71%), Positives = 188/218 (86%)
Frame = +1
Query: 1 LKEQHVHSVGHDRLKIFPPEVDRIKFQSALHNLKSMLPKVVVKGFPSVDRAIIREVKNVH 180
LK +HV + +L+++P +D+ K LHNLKSMLPKV+VKG P+V+RA+I + + +
Sbjct: 1172 LKSEHVRVIDKAKLRVYPTAIDKSKLLYELHNLKSMLPKVIVKGIPTVERAVISQTGDKY 1231
Query: 181 SLVVEGTNLLGVMGTLGIDGRKTTSNHVMEVVRTLGIEASRTSIINEIKFTMNSHGMSID 360
SL+VEGTNLL VMGT G+D KT SNH+MEV RTLGIEA+R SII+EI++TM SHGM+ID
Sbjct: 1232 SLLVEGTNLLAVMGTPGVDAMKTKSNHIMEVNRTLGIEAARRSIIDEIQYTMTSHGMNID 1291
Query: 361 LRHMMLLADLMTYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNASYAGRDDQIEGV 540
RHMMLLADLMTYKGE+LGITR+GI+KMK SVLMLASFEKTAEHLFNASY+GR+DQIEGV
Sbjct: 1292 SRHMMLLADLMTYKGEILGITRYGIAKMKSSVLMLASFEKTAEHLFNASYSGREDQIEGV 1351
Query: 541 SECIIMGIPMQLGTGILRVRQRVDNLPELKYAPDPILS 654
SECIIMGIPMQLGTGIL+VRQR+D+LPE KY PDPIL+
Sbjct: 1352 SECIIMGIPMQLGTGILKVRQRLDHLPEFKYQPDPILA 1389
>tpg|DAA37177.1| TPA: putative DNA-directed RNA polymerase family protein [Zea mays]
Length = 336
Score = 316 bits (809), Expect = 7e-84
Identities = 157/223 (70%), Positives = 187/223 (83%), Gaps = 5/223 (2%)
Frame = +1
Query: 1 LKEQHVHSVGHDRLKIFPPEVDRIKFQSALHNLKSMLPKVVVKGFPSVDRAIIREVK--- 171
LK +HV + +L+I+P D++K Q LHNLKS+LPKV+VKG P+V+R +I EVK
Sbjct: 114 LKSEHVRVIDRAKLRIYPAGTDKLKLQLELHNLKSILPKVIVKGIPTVERVVIDEVKVNN 173
Query: 172 --NVHSLVVEGTNLLGVMGTLGIDGRKTTSNHVMEVVRTLGIEASRTSIINEIKFTMNSH 345
+ L+VEGTNLL VMGT G+D RKT SNH+ME +TLGIEA+R SII+EI++TM SH
Sbjct: 174 ATERYQLLVEGTNLLAVMGTPGVDARKTKSNHIMETNQTLGIEAARRSIIDEIQYTMKSH 233
Query: 346 GMSIDLRHMMLLADLMTYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNASYAGRDD 525
GM+ID RHMMLLADLMTYKGE+LGITR+GI+KMK SVLMLASFEKTAEHLFNASY+GR D
Sbjct: 234 GMNIDRRHMMLLADLMTYKGEILGITRYGIAKMKSSVLMLASFEKTAEHLFNASYSGRQD 293
Query: 526 QIEGVSECIIMGIPMQLGTGILRVRQRVDNLPELKYAPDPILS 654
QIEGVSECIIMGIPMQLGTGIL+VRQR+D++PE KY PDPILS
Sbjct: 294 QIEGVSECIIMGIPMQLGTGILKVRQRLDHVPEFKYQPDPILS 336
>ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Setaria
italica]
Length = 1397
Score = 313 bits (801), Expect = 6e-83
Identities = 156/223 (69%), Positives = 188/223 (84%), Gaps = 5/223 (2%)
Frame = +1
Query: 1 LKEQHVHSVGHDRLKIFPPEVDRIKFQSALHNLKSMLPKVVVKGFPSVDRAIIREVKNV- 177
LK +HV + +L+I+P D+ K Q LHNLK+MLPKV+VKG P+V+R +I E K
Sbjct: 1175 LKSEHVRVIDRAKLRIYPAGTDKSKLQLELHNLKAMLPKVIVKGIPTVERVVIDERKKEG 1234
Query: 178 ----HSLVVEGTNLLGVMGTLGIDGRKTTSNHVMEVVRTLGIEASRTSIINEIKFTMNSH 345
++L+VEGTNLL VMGT G+D R T SNH+ME+ TLGIEA+R SII+EI++TM SH
Sbjct: 1235 KLEKYNLLVEGTNLLAVMGTPGVDARNTKSNHIMEMNSTLGIEAARRSIIDEIQYTMKSH 1294
Query: 346 GMSIDLRHMMLLADLMTYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNASYAGRDD 525
GM+ID+RHMMLLADLMTYKGEVLGITR+GI+KMK SVLMLASFEKT+EHLFNASY+GR+D
Sbjct: 1295 GMNIDVRHMMLLADLMTYKGEVLGITRYGIAKMKTSVLMLASFEKTSEHLFNASYSGRED 1354
Query: 526 QIEGVSECIIMGIPMQLGTGILRVRQRVDNLPELKYAPDPILS 654
+IEGVSECIIMGIPMQLGTGIL+VRQR+D+LPELKY PDPILS
Sbjct: 1355 EIEGVSECIIMGIPMQLGTGILKVRQRLDHLPELKYQPDPILS 1397
>gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japonica Group]
Length = 1321
Score = 313 bits (801), Expect = 6e-83
Identities = 156/222 (70%), Positives = 186/222 (83%), Gaps = 4/222 (1%)
Frame = +1
Query: 1 LKEQHVHSVGHDRLKIFPPEVDRIKFQSALHNLKSMLPKVVVKGFPSVDRAIIREVKNV- 177
LK +HV + +L+I+P +D+ K LH+LKSMLPKV+VKG P+V+RA+I E
Sbjct: 1100 LKSEHVRVIDKSKLRIYPAGIDKSKLLYELHHLKSMLPKVIVKGIPTVERAVISETGEEN 1159
Query: 178 ---HSLVVEGTNLLGVMGTLGIDGRKTTSNHVMEVVRTLGIEASRTSIINEIKFTMNSHG 348
+ L+VEGTNLL VMGT G+D KT SNH+MEV RTLGIEA+R SII+EI++TM SHG
Sbjct: 1160 DKRYKLLVEGTNLLAVMGTPGVDAMKTKSNHIMEVNRTLGIEAARRSIIDEIQYTMKSHG 1219
Query: 349 MSIDLRHMMLLADLMTYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNASYAGRDDQ 528
M+ID RHMMLLADLMTYKGE+LGITR+GI+KMK SVLMLASFEKTAEHLFNASY+GR+DQ
Sbjct: 1220 MNIDSRHMMLLADLMTYKGEILGITRYGIAKMKSSVLMLASFEKTAEHLFNASYSGREDQ 1279
Query: 529 IEGVSECIIMGIPMQLGTGILRVRQRVDNLPELKYAPDPILS 654
IEGVSECIIMGIPMQLGTGIL+VRQR+D+LPE KY PDPIL+
Sbjct: 1280 IEGVSECIIMGIPMQLGTGILKVRQRLDHLPEFKYQPDPILA 1321
>ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa
Japonica Group] gi|38347455|emb|CAD41360.2|
OSJNBa0076N16.24 [Oryza sativa Japonica Group]
gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa
Japonica Group] gi|116310339|emb|CAH67354.1|
OSIGBa0130B08.14 [Oryza sativa Indica Group]
gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa
Indica Group] gi|215768005|dbj|BAH00234.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|218195112|gb|EEC77539.1| hypothetical protein
OsI_16437 [Oryza sativa Indica Group]
Length = 1383
Score = 313 bits (801), Expect = 6e-83
Identities = 156/222 (70%), Positives = 186/222 (83%), Gaps = 4/222 (1%)
Frame = +1
Query: 1 LKEQHVHSVGHDRLKIFPPEVDRIKFQSALHNLKSMLPKVVVKGFPSVDRAIIREVKNV- 177
LK +HV + +L+I+P +D+ K LH+LKSMLPKV+VKG P+V+RA+I E
Sbjct: 1162 LKSEHVRVIDKSKLRIYPAGIDKSKLLYELHHLKSMLPKVIVKGIPTVERAVISETGEEN 1221
Query: 178 ---HSLVVEGTNLLGVMGTLGIDGRKTTSNHVMEVVRTLGIEASRTSIINEIKFTMNSHG 348
+ L+VEGTNLL VMGT G+D KT SNH+MEV RTLGIEA+R SII+EI++TM SHG
Sbjct: 1222 DKRYKLLVEGTNLLAVMGTPGVDAMKTKSNHIMEVNRTLGIEAARRSIIDEIQYTMKSHG 1281
Query: 349 MSIDLRHMMLLADLMTYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNASYAGRDDQ 528
M+ID RHMMLLADLMTYKGE+LGITR+GI+KMK SVLMLASFEKTAEHLFNASY+GR+DQ
Sbjct: 1282 MNIDSRHMMLLADLMTYKGEILGITRYGIAKMKSSVLMLASFEKTAEHLFNASYSGREDQ 1341
Query: 529 IEGVSECIIMGIPMQLGTGILRVRQRVDNLPELKYAPDPILS 654
IEGVSECIIMGIPMQLGTGIL+VRQR+D+LPE KY PDPIL+
Sbjct: 1342 IEGVSECIIMGIPMQLGTGILKVRQRLDHLPEFKYQPDPILA 1383
>ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
gi|241937900|gb|EES11045.1| hypothetical protein
SORBIDRAFT_06g021120 [Sorghum bicolor]
Length = 1391
Score = 311 bits (797), Expect = 2e-82
Identities = 155/223 (69%), Positives = 186/223 (83%), Gaps = 5/223 (2%)
Frame = +1
Query: 1 LKEQHVHSVGHDRLKIFPPEVDRIKFQSALHNLKSMLPKVVVKGFPSVDRAIIREVK--- 171
LK +HV + +L+I+P D+ K Q LHNLKS+LPKV+VKG P+V+R +I EVK
Sbjct: 1169 LKSEHVRVIDRAKLRIYPAGTDKRKLQLELHNLKSILPKVIVKGIPTVERVVIDEVKVKN 1228
Query: 172 --NVHSLVVEGTNLLGVMGTLGIDGRKTTSNHVMEVVRTLGIEASRTSIINEIKFTMNSH 345
+ L+VEGTNLL VMGT G+D KT SNH+ME +TLGIEA+R SII+EI++TM SH
Sbjct: 1229 ETERYQLLVEGTNLLAVMGTPGVDATKTKSNHIMETNQTLGIEAARRSIIDEIQYTMKSH 1288
Query: 346 GMSIDLRHMMLLADLMTYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNASYAGRDD 525
GM+ID RHMMLLADLMTYKGE+LGITR+GI+KMK SVLMLASFEKT+EHLFNASY+GR+D
Sbjct: 1289 GMNIDRRHMMLLADLMTYKGEILGITRYGIAKMKSSVLMLASFEKTSEHLFNASYSGRED 1348
Query: 526 QIEGVSECIIMGIPMQLGTGILRVRQRVDNLPELKYAPDPILS 654
QIEGVSECIIMGIPMQLGTGIL+VRQR+D++PE KY PDPILS
Sbjct: 1349 QIEGVSECIIMGIPMQLGTGILKVRQRLDHVPEFKYQPDPILS 1391
>gb|EMT01541.1| DNA-directed RNA polymerase III subunit RPC1 [Aegilops tauschii]
Length = 1117
Score = 304 bits (778), Expect = 3e-80
Identities = 153/224 (68%), Positives = 184/224 (82%), Gaps = 6/224 (2%)
Frame = +1
Query: 1 LKEQHVHSVGHDRLKIFPPEVDRIKFQSALHNLKSMLPKVVVKGFPSVDRAIIREVKNV- 177
LK QHV + +L+I+P DR K Q LHNLKSMLPKV+VKG P+V+RA++ VK
Sbjct: 893 LKSQHVRVIDEAKLRIYPDGTDRSKLQFELHNLKSMLPKVIVKGIPTVERAVVNPVKGRD 952
Query: 178 -----HSLVVEGTNLLGVMGTLGIDGRKTTSNHVMEVVRTLGIEASRTSIINEIKFTMNS 342
++L+VEGTNLL V+G G+D KT SNH+MEV +TLGIEA+R SII+EI++T S
Sbjct: 953 KTIERYNLLVEGTNLLAVLGAPGVDAMKTKSNHIMEVNQTLGIEAARRSIIDEIQYTFES 1012
Query: 343 HGMSIDLRHMMLLADLMTYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNASYAGRD 522
+ M IDLRHMMLLADLMTYKGEVLGITR+GI+KMK SVLMLASFEKT+EHLFNASYAGR+
Sbjct: 1013 NNMIIDLRHMMLLADLMTYKGEVLGITRYGIAKMKSSVLMLASFEKTSEHLFNASYAGRE 1072
Query: 523 DQIEGVSECIIMGIPMQLGTGILRVRQRVDNLPELKYAPDPILS 654
DQI+GVSECIIMGIPMQLGTGIL+VRQR+++LPE KY P PI+S
Sbjct: 1073 DQIDGVSECIIMGIPMQLGTGILKVRQRLESLPEFKYQPAPIMS 1116
>gb|EMS65169.1| DNA-directed RNA polymerase III subunit rpc1 [Triticum urartu]
Length = 1248
Score = 304 bits (778), Expect = 3e-80
Identities = 153/224 (68%), Positives = 184/224 (82%), Gaps = 6/224 (2%)
Frame = +1
Query: 1 LKEQHVHSVGHDRLKIFPPEVDRIKFQSALHNLKSMLPKVVVKGFPSVDRAIIREVKNV- 177
LK QHV + +L+I+P DR K Q LHNLKSMLPKV+VKG P+V+RA++ VK
Sbjct: 1024 LKSQHVRVIDEAKLRIYPDGTDRSKLQFELHNLKSMLPKVIVKGIPTVERAVVNPVKGRD 1083
Query: 178 -----HSLVVEGTNLLGVMGTLGIDGRKTTSNHVMEVVRTLGIEASRTSIINEIKFTMNS 342
++L+VEGTNLL V+G G+D KT SNH+MEV +TLGIEA+R SII+EI++T S
Sbjct: 1084 KTIERYNLLVEGTNLLAVLGAPGVDAMKTKSNHIMEVNQTLGIEAARRSIIDEIQYTFES 1143
Query: 343 HGMSIDLRHMMLLADLMTYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNASYAGRD 522
+ M IDLRHMMLLADLMTYKGEVLGITR+GI+KMK SVLMLASFEKT+EHLFNASYAGR+
Sbjct: 1144 NNMIIDLRHMMLLADLMTYKGEVLGITRYGIAKMKSSVLMLASFEKTSEHLFNASYAGRE 1203
Query: 523 DQIEGVSECIIMGIPMQLGTGILRVRQRVDNLPELKYAPDPILS 654
DQI+GVSECIIMGIPMQLGTGIL+VRQR+++LPE KY P PI+S
Sbjct: 1204 DQIDGVSECIIMGIPMQLGTGILKVRQRLESLPEFKYQPAPIMS 1247
>ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Brachypodium distachyon]
Length = 1392
Score = 293 bits (750), Expect = 5e-77
Identities = 148/224 (66%), Positives = 180/224 (80%), Gaps = 6/224 (2%)
Frame = +1
Query: 1 LKEQHVHSVGHDRLKIFPPEVDRIKFQSALHNLKSMLPKVVVKGFPSVDRAIIREVKNV- 177
LK +HV + +L+I+P D+ K Q LH LKSMLPKV+VKG P+V+RA++ VK
Sbjct: 1169 LKSEHVRVIDGAKLRIYPTGTDKSKLQLELHTLKSMLPKVIVKGIPTVERAVVNPVKRPD 1228
Query: 178 -----HSLVVEGTNLLGVMGTLGIDGRKTTSNHVMEVVRTLGIEASRTSIINEIKFTMNS 342
++L+VEGTNLL V+GT G+D +KT SNH+MEV +TLGIEA+R SII+EI++T S
Sbjct: 1229 KTLDRYNLLVEGTNLLKVLGTPGVDAKKTKSNHIMEVNQTLGIEAARRSIIDEIRYTFES 1288
Query: 343 HGMSIDLRHMMLLADLMTYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNASYAGRD 522
+ M ID RHMMLLADLMTYKGEVLGITRFGI KMK SVLMLASFEKT EHLFNASY+GR+
Sbjct: 1289 NNMIIDQRHMMLLADLMTYKGEVLGITRFGIVKMKSSVLMLASFEKTLEHLFNASYSGRE 1348
Query: 523 DQIEGVSECIIMGIPMQLGTGILRVRQRVDNLPELKYAPDPILS 654
D+IEGVSECIIMGIPM LG+GIL+VRQR+D+LPE Y PD I+S
Sbjct: 1349 DEIEGVSECIIMGIPMTLGSGILKVRQRLDHLPEFNYQPDAIIS 1392
>gb|EMT10482.1| DNA-directed RNA polymerase III subunit RPC1 [Aegilops tauschii]
Length = 832
Score = 286 bits (733), Expect = 4e-75
Identities = 142/223 (63%), Positives = 180/223 (80%), Gaps = 6/223 (2%)
Frame = +1
Query: 1 LKEQHVHSVGHDRLKIFPPEVDRIKFQSALHNLKSMLPKVVVKGFPSVDRAIIREVK--- 171
LK +HV + +L+I+P D+ K Q LHNLKSMLPK++VKG +V+RA++ V
Sbjct: 609 LKSEHVRVIDETKLRIYPTGTDKSKLQLELHNLKSMLPKLIVKGISTVERAVVNPVLRRD 668
Query: 172 ---NVHSLVVEGTNLLGVMGTLGIDGRKTTSNHVMEVVRTLGIEASRTSIINEIKFTMNS 342
+ ++L+VEGTNLL V+GT G+D ++T SNH++EV +TLGIEA+R SII+EI++T +
Sbjct: 669 GTFDRYNLLVEGTNLLKVLGTPGVDAKRTKSNHILEVNKTLGIEAARRSIIDEIRYTFEN 728
Query: 343 HGMSIDLRHMMLLADLMTYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNASYAGRD 522
+ M IDLRHMMLLADLMTYKGE+LGIT GI+KMK SVLML+SFE+ +EHLFNASYAGR+
Sbjct: 729 NNMMIDLRHMMLLADLMTYKGEILGITAGGIAKMKSSVLMLSSFERASEHLFNASYAGRE 788
Query: 523 DQIEGVSECIIMGIPMQLGTGILRVRQRVDNLPELKYAPDPIL 651
DQIEGVSECIIMGIP QLGTGIL+VRQR+ +LPE KY PDPIL
Sbjct: 789 DQIEGVSECIIMGIPKQLGTGILKVRQRLQDLPEFKYQPDPIL 831
>gb|EMS65535.1| DNA-directed RNA polymerase III subunit RPC1 [Triticum urartu]
Length = 689
Score = 286 bits (731), Expect = 8e-75
Identities = 142/223 (63%), Positives = 180/223 (80%), Gaps = 6/223 (2%)
Frame = +1
Query: 1 LKEQHVHSVGHDRLKIFPPEVDRIKFQSALHNLKSMLPKVVVKGFPSVDRAIIREVK--- 171
LK +HV + +L+I+P D+ K Q LHNLKSMLPK++VKG SV+RA++ V
Sbjct: 466 LKSEHVRVIDEAKLRIYPTGKDKSKLQLELHNLKSMLPKLIVKGISSVERAVVNPVLRRD 525
Query: 172 ---NVHSLVVEGTNLLGVMGTLGIDGRKTTSNHVMEVVRTLGIEASRTSIINEIKFTMNS 342
+ ++L+VEGTNL+ V+GT G+D ++T SNH++EV +TLGIEA+R SII+EI++T +
Sbjct: 526 GTFDRYNLLVEGTNLMKVLGTPGVDAKRTKSNHILEVNKTLGIEAARRSIIDEIRYTFEN 585
Query: 343 HGMSIDLRHMMLLADLMTYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNASYAGRD 522
+ M IDLRHMMLLADLMTYKGE+LGIT GI+KMK SVLML+SFE+ +EHLFNA YAGR+
Sbjct: 586 NNMMIDLRHMMLLADLMTYKGEILGITAGGIAKMKSSVLMLSSFERASEHLFNALYAGRE 645
Query: 523 DQIEGVSECIIMGIPMQLGTGILRVRQRVDNLPELKYAPDPIL 651
DQIEGVSECIIMGIPMQLGTGIL+VRQR+ +LPE KY PDPIL
Sbjct: 646 DQIEGVSECIIMGIPMQLGTGILKVRQRLQDLPEFKYQPDPIL 688
>ref|XP_002985715.1| hypothetical protein SELMODRAFT_446351 [Selaginella moellendorffii]
gi|300146624|gb|EFJ13293.1| hypothetical protein
SELMODRAFT_446351 [Selaginella moellendorffii]
Length = 1393
Score = 286 bits (731), Expect = 8e-75
Identities = 144/219 (65%), Positives = 176/219 (80%), Gaps = 1/219 (0%)
Frame = +1
Query: 1 LKEQHVHSVGHDR-LKIFPPEVDRIKFQSALHNLKSMLPKVVVKGFPSVDRAIIREVKNV 177
LKEQHV V DR + + PE DR K ALH+L++MLPKV+VKG P+V+RA+I + K
Sbjct: 1176 LKEQHV-KVNDDRSISLTTPESDRKKMLFALHSLQNMLPKVIVKGIPTVERAVINQEKGK 1234
Query: 178 HSLVVEGTNLLGVMGTLGIDGRKTTSNHVMEVVRTLGIEASRTSIINEIKFTMNSHGMSI 357
++L+VEGTNL VMGT G+DGR+TTSNH+ E V LGIEA+R II EI++TM SHGMSI
Sbjct: 1235 YNLLVEGTNLKAVMGTEGVDGRETTSNHIFETVEVLGIEAARNGIIKEIQYTMGSHGMSI 1294
Query: 358 DLRHMMLLADLMTYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNASYAGRDDQIEG 537
D RHMMLLAD+MTY+GE+LGITRFG++KMK+SVLMLASFEKT +HLF AS GR DQIEG
Sbjct: 1295 DQRHMMLLADVMTYRGEILGITRFGMAKMKDSVLMLASFEKTTDHLFAASVHGRTDQIEG 1354
Query: 538 VSECIIMGIPMQLGTGILRVRQRVDNLPELKYAPDPILS 654
VSECIIMGIPM LGTG+ +VRQ+V +P+L Y P P+ S
Sbjct: 1355 VSECIIMGIPMPLGTGLFKVRQKVGRIPKLIYGPPPLFS 1393
>ref|XP_001757221.1| predicted protein [Physcomitrella patens] gi|162691719|gb|EDQ78080.1|
predicted protein [Physcomitrella patens]
Length = 1397
Score = 281 bits (719), Expect = 2e-73
Identities = 137/218 (62%), Positives = 177/218 (81%)
Frame = +1
Query: 1 LKEQHVHSVGHDRLKIFPPEVDRIKFQSALHNLKSMLPKVVVKGFPSVDRAIIREVKNVH 180
LK ++ V D+L + PP+ D+ K LH+L +MLPKV+VKG PSV+RA+I + K V+
Sbjct: 1180 LKHVNIRIVDRDKLIVIPPDQDKGKLYFYLHSLCNMLPKVIVKGIPSVERAVINKEKGVY 1239
Query: 181 SLVVEGTNLLGVMGTLGIDGRKTTSNHVMEVVRTLGIEASRTSIINEIKFTMNSHGMSID 360
+L+VEGTNL VMG G++G+ T SNHV+E +TLGIEA+R II+EI++TM SHGM+ID
Sbjct: 1240 NLLVEGTNLKAVMGISGVNGKLTKSNHVIEAEQTLGIEAARNVIIDEIQYTMGSHGMTID 1299
Query: 361 LRHMMLLADLMTYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNASYAGRDDQIEGV 540
RHMMLLAD+MTYKGEVLGITRFGI+KMK+SVLMLASFEKT +HLF+A+ GR D+IEGV
Sbjct: 1300 ARHMMLLADVMTYKGEVLGITRFGIAKMKDSVLMLASFEKTTDHLFDAAIHGRVDKIEGV 1359
Query: 541 SECIIMGIPMQLGTGILRVRQRVDNLPELKYAPDPILS 654
SECIIMGIPM +GTG+ ++RQ+V+ LP+L Y P P+LS
Sbjct: 1360 SECIIMGIPMPIGTGLFKIRQKVEKLPKLSYGPTPLLS 1397
>emb|CBI16226.3| unnamed protein product [Vitis vinifera]
Length = 1819
Score = 279 bits (714), Expect = 7e-73
Identities = 144/219 (65%), Positives = 179/219 (81%), Gaps = 1/219 (0%)
Frame = +1
Query: 1 LKEQHVHSVGHDRLKIFPPEVDRIKFQSALHNLKSMLPKVVVKGFPSVDRAIIREVKNV- 177
LK+QH+ + +L++ P + DR LH LK++LP VVVKG +V+RA+I + V
Sbjct: 1602 LKQQHIKVLDAGKLEVHP-QGDRSTIHFELHALKNLLPTVVVKGIETVERAVINKDNKVK 1660
Query: 178 HSLVVEGTNLLGVMGTLGIDGRKTTSNHVMEVVRTLGIEASRTSIINEIKFTMNSHGMSI 357
++L+VEGT L VMGT G+ GR+TTSNH++EV +TLGIEA+R IINEI++TM SHGMSI
Sbjct: 1661 YNLLVEGTGLQTVMGTEGVIGRETTSNHIIEVQQTLGIEAARKCIINEIQYTMASHGMSI 1720
Query: 358 DLRHMMLLADLMTYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNASYAGRDDQIEG 537
D+RHMMLLADLMT++GEVLGITRFGI KM +SVLMLASFEKTA+HLFNAS +GRDD+IEG
Sbjct: 1721 DIRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVSGRDDKIEG 1780
Query: 538 VSECIIMGIPMQLGTGILRVRQRVDNLPELKYAPDPILS 654
VSECIIMGIPMQLGTGIL+VRQR+ +PEL Y DPI+S
Sbjct: 1781 VSECIIMGIPMQLGTGILKVRQRLQQVPELSYGLDPIIS 1819
>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
vinifera]
Length = 1383
Score = 279 bits (714), Expect = 7e-73
Identities = 144/219 (65%), Positives = 179/219 (81%), Gaps = 1/219 (0%)
Frame = +1
Query: 1 LKEQHVHSVGHDRLKIFPPEVDRIKFQSALHNLKSMLPKVVVKGFPSVDRAIIREVKNV- 177
LK+QH+ + +L++ P + DR LH LK++LP VVVKG +V+RA+I + V
Sbjct: 1166 LKQQHIKVLDAGKLEVHP-QGDRSTIHFELHALKNLLPTVVVKGIETVERAVINKDNKVK 1224
Query: 178 HSLVVEGTNLLGVMGTLGIDGRKTTSNHVMEVVRTLGIEASRTSIINEIKFTMNSHGMSI 357
++L+VEGT L VMGT G+ GR+TTSNH++EV +TLGIEA+R IINEI++TM SHGMSI
Sbjct: 1225 YNLLVEGTGLQTVMGTEGVIGRETTSNHIIEVQQTLGIEAARKCIINEIQYTMASHGMSI 1284
Query: 358 DLRHMMLLADLMTYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNASYAGRDDQIEG 537
D+RHMMLLADLMT++GEVLGITRFGI KM +SVLMLASFEKTA+HLFNAS +GRDD+IEG
Sbjct: 1285 DIRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVSGRDDKIEG 1344
Query: 538 VSECIIMGIPMQLGTGILRVRQRVDNLPELKYAPDPILS 654
VSECIIMGIPMQLGTGIL+VRQR+ +PEL Y DPI+S
Sbjct: 1345 VSECIIMGIPMQLGTGILKVRQRLQQVPELSYGLDPIIS 1383
>ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [Amborella trichopoda]
gi|548832896|gb|ERM95665.1| hypothetical protein
AMTR_s00023p00196820 [Amborella trichopoda]
Length = 1383
Score = 274 bits (701), Expect = 2e-71
Identities = 138/206 (66%), Positives = 171/206 (83%)
Frame = +1
Query: 34 DRLKIFPPEVDRIKFQSALHNLKSMLPKVVVKGFPSVDRAIIREVKNVHSLVVEGTNLLG 213
D+LKI PE+ R + +LH L+S+LPK++VKG P+V+RA+I VK +L+VEGTNLL
Sbjct: 1177 DKLKILLPEIGRKEVLYSLHLLQSLLPKIIVKGIPTVERAVINNVKGKLNLLVEGTNLLA 1236
Query: 214 VMGTLGIDGRKTTSNHVMEVVRTLGIEASRTSIINEIKFTMNSHGMSIDLRHMMLLADLM 393
VMGT G+DGR TTSNH++EV TLGIEA+R SII+EI++TM SHGMSIDLRHMMLLADLM
Sbjct: 1237 VMGTPGVDGRNTTSNHIVEVEGTLGIEAARKSIIDEIQYTMKSHGMSIDLRHMMLLADLM 1296
Query: 394 TYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNASYAGRDDQIEGVSECIIMGIPMQ 573
T++G VLGI RFGI+KMKESVLMLASFE+TA+ LF+A+ GR D I GVSECIIMG+PMQ
Sbjct: 1297 TFRGLVLGIQRFGITKMKESVLMLASFERTADILFDATTRGRVDTIAGVSECIIMGVPMQ 1356
Query: 574 LGTGILRVRQRVDNLPELKYAPDPIL 651
+GTGIL V+QR + L +L Y PDPI+
Sbjct: 1357 IGTGILSVQQRPEQLAKLTYGPDPII 1382
>gb|EXB53229.1| DNA-directed RNA polymerase III subunit RPC1 [Morus notabilis]
Length = 1179
Score = 269 bits (687), Expect = 1e-69
Identities = 138/225 (61%), Positives = 173/225 (76%), Gaps = 7/225 (3%)
Frame = +1
Query: 1 LKEQHVHSVGHDRLKIFPPEVDRIKFQSALHNLKSMLPKVVVKGFPSVDRAIIR------ 162
LK++H+ + +L+I P E +R K L L ML ++VKG +V+RA+I
Sbjct: 954 LKKEHIRVLDFKKLEILPYESNRSKLYHHLQFLAKMLQNILVKGIKTVERAVISSEKDKK 1013
Query: 163 -EVKNVHSLVVEGTNLLGVMGTLGIDGRKTTSNHVMEVVRTLGIEASRTSIINEIKFTMN 339
++ + L+VEGT LLGVMGT G+DGR T +NH++EV +TLGIEA+RT II+EI++TM
Sbjct: 1014 TDISKKYKLLVEGTGLLGVMGTEGVDGRNTKTNHIIEVQQTLGIEAARTCIIDEIEYTMK 1073
Query: 340 SHGMSIDLRHMMLLADLMTYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNASYAGR 519
SHGMSID RHMMLLAD+MT +GEVLGITRFGI KM +SVLMLASFEKTA+HLFNAS GR
Sbjct: 1074 SHGMSIDTRHMMLLADVMTSRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGR 1133
Query: 520 DDQIEGVSECIIMGIPMQLGTGILRVRQRVDNLPELKYAPDPILS 654
+D+IEGVSECIIMGIPMQ+GTG+++VRQRVD P L Y P PILS
Sbjct: 1134 EDKIEGVSECIIMGIPMQIGTGMIKVRQRVDVPPMLSYGPKPILS 1178
>ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Cucumis
sativus]
Length = 1400
Score = 268 bits (686), Expect = 1e-69
Identities = 140/224 (62%), Positives = 170/224 (75%), Gaps = 6/224 (2%)
Frame = +1
Query: 1 LKEQHVHSVGHDRLKIFPPEVDRIKFQSALHNLKSMLPKVVVKGFPSVDRAIIREVKNV- 177
LK +H++ + +L++ P + DR K LH LK+MLP VVVKG +V RA+I+E K+
Sbjct: 1177 LKHEHINVLDDRKLRVLPQDADRNKLHFNLHFLKNMLPGVVVKGIKTVGRAVIKEEKDKA 1236
Query: 178 -----HSLVVEGTNLLGVMGTLGIDGRKTTSNHVMEVVRTLGIEASRTSIINEIKFTMNS 342
SL+VEGT L VMGT G+DG T SNH++EV + LGIEA+R II EIK+TM S
Sbjct: 1237 RNAKKFSLLVEGTGLQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMES 1296
Query: 343 HGMSIDLRHMMLLADLMTYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNASYAGRD 522
HGMSID+RHMMLL DLMT++GEVLGITRFGI KM +SVLMLASFEKTA+HLFNAS GRD
Sbjct: 1297 HGMSIDIRHMMLLGDLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRD 1356
Query: 523 DQIEGVSECIIMGIPMQLGTGILRVRQRVDNLPELKYAPDPILS 654
D+IEGVSEC+IMGIPM LGTG+L+VRQRV +L Y P ILS
Sbjct: 1357 DKIEGVSECVIMGIPMPLGTGMLKVRQRVSVPQQLPYGPPAILS 1400
>ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
X1 [Citrus sinensis] gi|568870034|ref|XP_006488217.1|
PREDICTED: DNA-directed RNA polymerase III subunit
rpc1-like isoform X2 [Citrus sinensis]
Length = 1404
Score = 264 bits (674), Expect = 3e-68
Identities = 144/231 (62%), Positives = 173/231 (74%), Gaps = 13/231 (5%)
Frame = +1
Query: 1 LKEQHVHSVGHDRLKIFPPEVDRIKFQSALHNLKSMLPKVVVKGFPSVDRAIIREV---- 168
LK+QH+ + +L+IFPP VD+ K L++LK++LP V+VKG +V+R +I E
Sbjct: 1175 LKQQHIKVLDFRKLEIFPP-VDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEK 1233
Query: 169 --------KNVHSLVVEGTNLLGVMGTLGIDGRKTTSNHVMEVVRTLGIEASRTSIINEI 324
K + L+VEGT L VMG GIDG KT SNH+ EV +TLGIEA+R II+EI
Sbjct: 1234 RKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEI 1293
Query: 325 KFTMNSHGMSIDLRHMMLLADLMTYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNA 504
TM +HGMSID RHMMLLADLMT++GEVLGITRFGI KM +SVLMLASFEKTA+HLFNA
Sbjct: 1294 NETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNA 1353
Query: 505 SYAGRDDQIEGVSECIIMGIPMQLGTGILRVRQRVDNLPELKY-APDPILS 654
S GRDD+IEGVSECIIMGIPM LGTGIL++RQR P LKY APDPI+S
Sbjct: 1354 SVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQRDAVPPMLKYGAPDPIMS 1404
>ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citrus clementina]
gi|557526635|gb|ESR37941.1| hypothetical protein
CICLE_v10027681mg [Citrus clementina]
Length = 1397
Score = 264 bits (674), Expect = 3e-68
Identities = 144/231 (62%), Positives = 173/231 (74%), Gaps = 13/231 (5%)
Frame = +1
Query: 1 LKEQHVHSVGHDRLKIFPPEVDRIKFQSALHNLKSMLPKVVVKGFPSVDRAIIREV---- 168
LK+QH+ + +L+IFPP VD+ K L++LK++LP V+VKG +V+R +I E
Sbjct: 1168 LKQQHIKVLDFRKLEIFPP-VDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEK 1226
Query: 169 --------KNVHSLVVEGTNLLGVMGTLGIDGRKTTSNHVMEVVRTLGIEASRTSIINEI 324
K + L+VEGT L VMG GIDG KT SNH+ EV +TLGIEA+R II+EI
Sbjct: 1227 RKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEI 1286
Query: 325 KFTMNSHGMSIDLRHMMLLADLMTYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNA 504
TM +HGMSID RHMMLLADLMT++GEVLGITRFGI KM +SVLMLASFEKTA+HLFNA
Sbjct: 1287 NETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNA 1346
Query: 505 SYAGRDDQIEGVSECIIMGIPMQLGTGILRVRQRVDNLPELKY-APDPILS 654
S GRDD+IEGVSECIIMGIPM LGTGIL++RQR P LKY APDPI+S
Sbjct: 1347 SVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQRDAVPPMLKYGAPDPIMS 1397