BLASTX nr result
ID: Zingiber23_contig00027946
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00027946
(744 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III s... 305 8e-81
gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japo... 304 2e-80
ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g... 304 2e-80
ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III s... 299 6e-79
tpg|DAA37177.1| TPA: putative DNA-directed RNA polymerase family... 298 1e-78
ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [S... 298 1e-78
gb|EMT01541.1| DNA-directed RNA polymerase III subunit RPC1 [Aeg... 296 5e-78
gb|EMS65169.1| DNA-directed RNA polymerase III subunit rpc1 [Tri... 296 5e-78
emb|CBI16226.3| unnamed protein product [Vitis vinifera] 292 9e-77
ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s... 292 9e-77
ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III s... 284 2e-74
gb|EMT10482.1| DNA-directed RNA polymerase III subunit RPC1 [Aeg... 280 4e-73
gb|EMS65535.1| DNA-directed RNA polymerase III subunit RPC1 [Tri... 280 5e-73
ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [A... 275 9e-72
ref|XP_001757221.1| predicted protein [Physcomitrella patens] gi... 273 4e-71
ref|XP_002985715.1| hypothetical protein SELMODRAFT_446351 [Sela... 272 7e-71
ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III s... 269 8e-70
gb|EXB53229.1| DNA-directed RNA polymerase III subunit RPC1 [Mor... 266 5e-69
ref|XP_003570766.1| PREDICTED: DNA-directed RNA polymerase III s... 265 1e-68
ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III s... 265 2e-68
>ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Oryza
brachyantha]
Length = 1389
Score = 305 bits (782), Expect = 8e-81
Identities = 153/211 (72%), Positives = 178/211 (84%)
Frame = +3
Query: 9 KSKIYTPEVDRRKLLSELHNLKSMLPKVVVKAIPSVERAIIXXXXXXXXXXXXYSLLVEG 188
K ++Y +D+ KLL ELHNLKSMLPKV+VK IP+VERA+I YSLLVEG
Sbjct: 1184 KLRVYPTAIDKSKLLYELHNLKSMLPKVIVKGIPTVERAVISQTGDK------YSLLVEG 1237
Query: 189 TNLLGVMGTQGIDGRKTTSNHVIEVQQTLGIEAARKCIVNEIQYTMRSHGMSIDLRHMML 368
TNLL VMGT G+D KT SNH++EV +TLGIEAAR+ I++EIQYTM SHGM+ID RHMML
Sbjct: 1238 TNLLAVMGTPGVDAMKTKSNHIMEVNRTLGIEAARRSIIDEIQYTMTSHGMNIDSRHMML 1297
Query: 369 LADLMTYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNASYAGRDDRIEGVSECIIM 548
LADLMTYKGE+LGITR+GI+KMK SVLMLASFEKTAEHLFNASY+GR+D+IEGVSECIIM
Sbjct: 1298 LADLMTYKGEILGITRYGIAKMKSSVLMLASFEKTAEHLFNASYSGREDQIEGVSECIIM 1357
Query: 549 GIPMQLGTGILKLRQRVEKLPELKYASDPII 641
GIPMQLGTGILK+RQR++ LPE KY DPI+
Sbjct: 1358 GIPMQLGTGILKVRQRLDHLPEFKYQPDPIL 1388
>gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japonica Group]
Length = 1321
Score = 304 bits (778), Expect = 2e-80
Identities = 155/214 (72%), Positives = 180/214 (84%), Gaps = 2/214 (0%)
Frame = +3
Query: 6 DKSK--IYTPEVDRRKLLSELHNLKSMLPKVVVKAIPSVERAIIXXXXXXXXXXXXYSLL 179
DKSK IY +D+ KLL ELH+LKSMLPKV+VK IP+VERA+I Y LL
Sbjct: 1109 DKSKLRIYPAGIDKSKLLYELHHLKSMLPKVIVKGIPTVERAVISETGEENDKR--YKLL 1166
Query: 180 VEGTNLLGVMGTQGIDGRKTTSNHVIEVQQTLGIEAARKCIVNEIQYTMRSHGMSIDLRH 359
VEGTNLL VMGT G+D KT SNH++EV +TLGIEAAR+ I++EIQYTM+SHGM+ID RH
Sbjct: 1167 VEGTNLLAVMGTPGVDAMKTKSNHIMEVNRTLGIEAARRSIIDEIQYTMKSHGMNIDSRH 1226
Query: 360 MMLLADLMTYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNASYAGRDDRIEGVSEC 539
MMLLADLMTYKGE+LGITR+GI+KMK SVLMLASFEKTAEHLFNASY+GR+D+IEGVSEC
Sbjct: 1227 MMLLADLMTYKGEILGITRYGIAKMKSSVLMLASFEKTAEHLFNASYSGREDQIEGVSEC 1286
Query: 540 IIMGIPMQLGTGILKLRQRVEKLPELKYASDPII 641
IIMGIPMQLGTGILK+RQR++ LPE KY DPI+
Sbjct: 1287 IIMGIPMQLGTGILKVRQRLDHLPEFKYQPDPIL 1320
>ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa
Japonica Group] gi|38347455|emb|CAD41360.2|
OSJNBa0076N16.24 [Oryza sativa Japonica Group]
gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa
Japonica Group] gi|116310339|emb|CAH67354.1|
OSIGBa0130B08.14 [Oryza sativa Indica Group]
gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa
Indica Group] gi|215768005|dbj|BAH00234.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|218195112|gb|EEC77539.1| hypothetical protein
OsI_16437 [Oryza sativa Indica Group]
Length = 1383
Score = 304 bits (778), Expect = 2e-80
Identities = 155/214 (72%), Positives = 180/214 (84%), Gaps = 2/214 (0%)
Frame = +3
Query: 6 DKSK--IYTPEVDRRKLLSELHNLKSMLPKVVVKAIPSVERAIIXXXXXXXXXXXXYSLL 179
DKSK IY +D+ KLL ELH+LKSMLPKV+VK IP+VERA+I Y LL
Sbjct: 1171 DKSKLRIYPAGIDKSKLLYELHHLKSMLPKVIVKGIPTVERAVISETGEENDKR--YKLL 1228
Query: 180 VEGTNLLGVMGTQGIDGRKTTSNHVIEVQQTLGIEAARKCIVNEIQYTMRSHGMSIDLRH 359
VEGTNLL VMGT G+D KT SNH++EV +TLGIEAAR+ I++EIQYTM+SHGM+ID RH
Sbjct: 1229 VEGTNLLAVMGTPGVDAMKTKSNHIMEVNRTLGIEAARRSIIDEIQYTMKSHGMNIDSRH 1288
Query: 360 MMLLADLMTYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNASYAGRDDRIEGVSEC 539
MMLLADLMTYKGE+LGITR+GI+KMK SVLMLASFEKTAEHLFNASY+GR+D+IEGVSEC
Sbjct: 1289 MMLLADLMTYKGEILGITRYGIAKMKSSVLMLASFEKTAEHLFNASYSGREDQIEGVSEC 1348
Query: 540 IIMGIPMQLGTGILKLRQRVEKLPELKYASDPII 641
IIMGIPMQLGTGILK+RQR++ LPE KY DPI+
Sbjct: 1349 IIMGIPMQLGTGILKVRQRLDHLPEFKYQPDPIL 1382
>ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Setaria
italica]
Length = 1397
Score = 299 bits (766), Expect = 6e-79
Identities = 150/211 (71%), Positives = 176/211 (83%)
Frame = +3
Query: 9 KSKIYTPEVDRRKLLSELHNLKSMLPKVVVKAIPSVERAIIXXXXXXXXXXXXYSLLVEG 188
K +IY D+ KL ELHNLK+MLPKV+VK IP+VER +I Y+LLVEG
Sbjct: 1187 KLRIYPAGTDKSKLQLELHNLKAMLPKVIVKGIPTVERVVIDERKKEGKLEK-YNLLVEG 1245
Query: 189 TNLLGVMGTQGIDGRKTTSNHVIEVQQTLGIEAARKCIVNEIQYTMRSHGMSIDLRHMML 368
TNLL VMGT G+D R T SNH++E+ TLGIEAAR+ I++EIQYTM+SHGM+ID+RHMML
Sbjct: 1246 TNLLAVMGTPGVDARNTKSNHIMEMNSTLGIEAARRSIIDEIQYTMKSHGMNIDVRHMML 1305
Query: 369 LADLMTYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNASYAGRDDRIEGVSECIIM 548
LADLMTYKGEVLGITR+GI+KMK SVLMLASFEKT+EHLFNASY+GR+D IEGVSECIIM
Sbjct: 1306 LADLMTYKGEVLGITRYGIAKMKTSVLMLASFEKTSEHLFNASYSGREDEIEGVSECIIM 1365
Query: 549 GIPMQLGTGILKLRQRVEKLPELKYASDPII 641
GIPMQLGTGILK+RQR++ LPELKY DPI+
Sbjct: 1366 GIPMQLGTGILKVRQRLDHLPELKYQPDPIL 1396
>tpg|DAA37177.1| TPA: putative DNA-directed RNA polymerase family protein [Zea mays]
Length = 336
Score = 298 bits (764), Expect = 1e-78
Identities = 150/211 (71%), Positives = 174/211 (82%)
Frame = +3
Query: 9 KSKIYTPEVDRRKLLSELHNLKSMLPKVVVKAIPSVERAIIXXXXXXXXXXXXYSLLVEG 188
K +IY D+ KL ELHNLKS+LPKV+VK IP+VER +I Y LLVEG
Sbjct: 126 KLRIYPAGTDKLKLQLELHNLKSILPKVIVKGIPTVERVVIDEVKVNNATER-YQLLVEG 184
Query: 189 TNLLGVMGTQGIDGRKTTSNHVIEVQQTLGIEAARKCIVNEIQYTMRSHGMSIDLRHMML 368
TNLL VMGT G+D RKT SNH++E QTLGIEAAR+ I++EIQYTM+SHGM+ID RHMML
Sbjct: 185 TNLLAVMGTPGVDARKTKSNHIMETNQTLGIEAARRSIIDEIQYTMKSHGMNIDRRHMML 244
Query: 369 LADLMTYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNASYAGRDDRIEGVSECIIM 548
LADLMTYKGE+LGITR+GI+KMK SVLMLASFEKTAEHLFNASY+GR D+IEGVSECIIM
Sbjct: 245 LADLMTYKGEILGITRYGIAKMKSSVLMLASFEKTAEHLFNASYSGRQDQIEGVSECIIM 304
Query: 549 GIPMQLGTGILKLRQRVEKLPELKYASDPII 641
GIPMQLGTGILK+RQR++ +PE KY DPI+
Sbjct: 305 GIPMQLGTGILKVRQRLDHVPEFKYQPDPIL 335
>ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
gi|241937900|gb|EES11045.1| hypothetical protein
SORBIDRAFT_06g021120 [Sorghum bicolor]
Length = 1391
Score = 298 bits (764), Expect = 1e-78
Identities = 149/211 (70%), Positives = 175/211 (82%)
Frame = +3
Query: 9 KSKIYTPEVDRRKLLSELHNLKSMLPKVVVKAIPSVERAIIXXXXXXXXXXXXYSLLVEG 188
K +IY D+RKL ELHNLKS+LPKV+VK IP+VER +I Y LLVEG
Sbjct: 1181 KLRIYPAGTDKRKLQLELHNLKSILPKVIVKGIPTVERVVIDEVKVKNETER-YQLLVEG 1239
Query: 189 TNLLGVMGTQGIDGRKTTSNHVIEVQQTLGIEAARKCIVNEIQYTMRSHGMSIDLRHMML 368
TNLL VMGT G+D KT SNH++E QTLGIEAAR+ I++EIQYTM+SHGM+ID RHMML
Sbjct: 1240 TNLLAVMGTPGVDATKTKSNHIMETNQTLGIEAARRSIIDEIQYTMKSHGMNIDRRHMML 1299
Query: 369 LADLMTYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNASYAGRDDRIEGVSECIIM 548
LADLMTYKGE+LGITR+GI+KMK SVLMLASFEKT+EHLFNASY+GR+D+IEGVSECIIM
Sbjct: 1300 LADLMTYKGEILGITRYGIAKMKSSVLMLASFEKTSEHLFNASYSGREDQIEGVSECIIM 1359
Query: 549 GIPMQLGTGILKLRQRVEKLPELKYASDPII 641
GIPMQLGTGILK+RQR++ +PE KY DPI+
Sbjct: 1360 GIPMQLGTGILKVRQRLDHVPEFKYQPDPIL 1390
>gb|EMT01541.1| DNA-directed RNA polymerase III subunit RPC1 [Aegilops tauschii]
Length = 1117
Score = 296 bits (758), Expect = 5e-78
Identities = 149/211 (70%), Positives = 172/211 (81%)
Frame = +3
Query: 9 KSKIYTPEVDRRKLLSELHNLKSMLPKVVVKAIPSVERAIIXXXXXXXXXXXXYSLLVEG 188
K +IY DR KL ELHNLKSMLPKV+VK IP+VERA++ Y+LLVEG
Sbjct: 905 KLRIYPDGTDRSKLQFELHNLKSMLPKVIVKGIPTVERAVVNPVKGRDKTIERYNLLVEG 964
Query: 189 TNLLGVMGTQGIDGRKTTSNHVIEVQQTLGIEAARKCIVNEIQYTMRSHGMSIDLRHMML 368
TNLL V+G G+D KT SNH++EV QTLGIEAAR+ I++EIQYT S+ M IDLRHMML
Sbjct: 965 TNLLAVLGAPGVDAMKTKSNHIMEVNQTLGIEAARRSIIDEIQYTFESNNMIIDLRHMML 1024
Query: 369 LADLMTYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNASYAGRDDRIEGVSECIIM 548
LADLMTYKGEVLGITR+GI+KMK SVLMLASFEKT+EHLFNASYAGR+D+I+GVSECIIM
Sbjct: 1025 LADLMTYKGEVLGITRYGIAKMKSSVLMLASFEKTSEHLFNASYAGREDQIDGVSECIIM 1084
Query: 549 GIPMQLGTGILKLRQRVEKLPELKYASDPII 641
GIPMQLGTGILK+RQR+E LPE KY PI+
Sbjct: 1085 GIPMQLGTGILKVRQRLESLPEFKYQPAPIM 1115
>gb|EMS65169.1| DNA-directed RNA polymerase III subunit rpc1 [Triticum urartu]
Length = 1248
Score = 296 bits (758), Expect = 5e-78
Identities = 149/211 (70%), Positives = 172/211 (81%)
Frame = +3
Query: 9 KSKIYTPEVDRRKLLSELHNLKSMLPKVVVKAIPSVERAIIXXXXXXXXXXXXYSLLVEG 188
K +IY DR KL ELHNLKSMLPKV+VK IP+VERA++ Y+LLVEG
Sbjct: 1036 KLRIYPDGTDRSKLQFELHNLKSMLPKVIVKGIPTVERAVVNPVKGRDKTIERYNLLVEG 1095
Query: 189 TNLLGVMGTQGIDGRKTTSNHVIEVQQTLGIEAARKCIVNEIQYTMRSHGMSIDLRHMML 368
TNLL V+G G+D KT SNH++EV QTLGIEAAR+ I++EIQYT S+ M IDLRHMML
Sbjct: 1096 TNLLAVLGAPGVDAMKTKSNHIMEVNQTLGIEAARRSIIDEIQYTFESNNMIIDLRHMML 1155
Query: 369 LADLMTYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNASYAGRDDRIEGVSECIIM 548
LADLMTYKGEVLGITR+GI+KMK SVLMLASFEKT+EHLFNASYAGR+D+I+GVSECIIM
Sbjct: 1156 LADLMTYKGEVLGITRYGIAKMKSSVLMLASFEKTSEHLFNASYAGREDQIDGVSECIIM 1215
Query: 549 GIPMQLGTGILKLRQRVEKLPELKYASDPII 641
GIPMQLGTGILK+RQR+E LPE KY PI+
Sbjct: 1216 GIPMQLGTGILKVRQRLESLPEFKYQPAPIM 1246
>emb|CBI16226.3| unnamed protein product [Vitis vinifera]
Length = 1819
Score = 292 bits (747), Expect = 9e-77
Identities = 149/205 (72%), Positives = 173/205 (84%)
Frame = +3
Query: 27 PEVDRRKLLSELHNLKSMLPKVVVKAIPSVERAIIXXXXXXXXXXXXYSLLVEGTNLLGV 206
P+ DR + ELH LK++LP VVVK I +VERA+I Y+LLVEGT L V
Sbjct: 1619 PQGDRSTIHFELHALKNLLPTVVVKGIETVERAVINKDNKVK-----YNLLVEGTGLQTV 1673
Query: 207 MGTQGIDGRKTTSNHVIEVQQTLGIEAARKCIVNEIQYTMRSHGMSIDLRHMMLLADLMT 386
MGT+G+ GR+TTSNH+IEVQQTLGIEAARKCI+NEIQYTM SHGMSID+RHMMLLADLMT
Sbjct: 1674 MGTEGVIGRETTSNHIIEVQQTLGIEAARKCIINEIQYTMASHGMSIDIRHMMLLADLMT 1733
Query: 387 YKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNASYAGRDDRIEGVSECIIMGIPMQL 566
++GEVLGITRFGI KM +SVLMLASFEKTA+HLFNAS +GRDD+IEGVSECIIMGIPMQL
Sbjct: 1734 FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVSGRDDKIEGVSECIIMGIPMQL 1793
Query: 567 GTGILKLRQRVEKLPELKYASDPII 641
GTGILK+RQR++++PEL Y DPII
Sbjct: 1794 GTGILKVRQRLQQVPELSYGLDPII 1818
>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
vinifera]
Length = 1383
Score = 292 bits (747), Expect = 9e-77
Identities = 149/205 (72%), Positives = 173/205 (84%)
Frame = +3
Query: 27 PEVDRRKLLSELHNLKSMLPKVVVKAIPSVERAIIXXXXXXXXXXXXYSLLVEGTNLLGV 206
P+ DR + ELH LK++LP VVVK I +VERA+I Y+LLVEGT L V
Sbjct: 1183 PQGDRSTIHFELHALKNLLPTVVVKGIETVERAVINKDNKVK-----YNLLVEGTGLQTV 1237
Query: 207 MGTQGIDGRKTTSNHVIEVQQTLGIEAARKCIVNEIQYTMRSHGMSIDLRHMMLLADLMT 386
MGT+G+ GR+TTSNH+IEVQQTLGIEAARKCI+NEIQYTM SHGMSID+RHMMLLADLMT
Sbjct: 1238 MGTEGVIGRETTSNHIIEVQQTLGIEAARKCIINEIQYTMASHGMSIDIRHMMLLADLMT 1297
Query: 387 YKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNASYAGRDDRIEGVSECIIMGIPMQL 566
++GEVLGITRFGI KM +SVLMLASFEKTA+HLFNAS +GRDD+IEGVSECIIMGIPMQL
Sbjct: 1298 FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVSGRDDKIEGVSECIIMGIPMQL 1357
Query: 567 GTGILKLRQRVEKLPELKYASDPII 641
GTGILK+RQR++++PEL Y DPII
Sbjct: 1358 GTGILKVRQRLQQVPELSYGLDPII 1382
>ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Brachypodium distachyon]
Length = 1392
Score = 284 bits (726), Expect = 2e-74
Identities = 144/211 (68%), Positives = 167/211 (79%)
Frame = +3
Query: 9 KSKIYTPEVDRRKLLSELHNLKSMLPKVVVKAIPSVERAIIXXXXXXXXXXXXYSLLVEG 188
K +IY D+ KL ELH LKSMLPKV+VK IP+VERA++ Y+LLVEG
Sbjct: 1181 KLRIYPTGTDKSKLQLELHTLKSMLPKVIVKGIPTVERAVVNPVKRPDKTLDRYNLLVEG 1240
Query: 189 TNLLGVMGTQGIDGRKTTSNHVIEVQQTLGIEAARKCIVNEIQYTMRSHGMSIDLRHMML 368
TNLL V+GT G+D +KT SNH++EV QTLGIEAAR+ I++EI+YT S+ M ID RHMML
Sbjct: 1241 TNLLKVLGTPGVDAKKTKSNHIMEVNQTLGIEAARRSIIDEIRYTFESNNMIIDQRHMML 1300
Query: 369 LADLMTYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNASYAGRDDRIEGVSECIIM 548
LADLMTYKGEVLGITRFGI KMK SVLMLASFEKT EHLFNASY+GR+D IEGVSECIIM
Sbjct: 1301 LADLMTYKGEVLGITRFGIVKMKSSVLMLASFEKTLEHLFNASYSGREDEIEGVSECIIM 1360
Query: 549 GIPMQLGTGILKLRQRVEKLPELKYASDPII 641
GIPM LG+GILK+RQR++ LPE Y D II
Sbjct: 1361 GIPMTLGSGILKVRQRLDHLPEFNYQPDAII 1391
>gb|EMT10482.1| DNA-directed RNA polymerase III subunit RPC1 [Aegilops tauschii]
Length = 832
Score = 280 bits (716), Expect = 4e-73
Identities = 138/211 (65%), Positives = 170/211 (80%)
Frame = +3
Query: 9 KSKIYTPEVDRRKLLSELHNLKSMLPKVVVKAIPSVERAIIXXXXXXXXXXXXYSLLVEG 188
K +IY D+ KL ELHNLKSMLPK++VK I +VERA++ Y+LLVEG
Sbjct: 621 KLRIYPTGTDKSKLQLELHNLKSMLPKLIVKGISTVERAVVNPVLRRDGTFDRYNLLVEG 680
Query: 189 TNLLGVMGTQGIDGRKTTSNHVIEVQQTLGIEAARKCIVNEIQYTMRSHGMSIDLRHMML 368
TNLL V+GT G+D ++T SNH++EV +TLGIEAAR+ I++EI+YT ++ M IDLRHMML
Sbjct: 681 TNLLKVLGTPGVDAKRTKSNHILEVNKTLGIEAARRSIIDEIRYTFENNNMMIDLRHMML 740
Query: 369 LADLMTYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNASYAGRDDRIEGVSECIIM 548
LADLMTYKGE+LGIT GI+KMK SVLML+SFE+ +EHLFNASYAGR+D+IEGVSECIIM
Sbjct: 741 LADLMTYKGEILGITAGGIAKMKSSVLMLSSFERASEHLFNASYAGREDQIEGVSECIIM 800
Query: 549 GIPMQLGTGILKLRQRVEKLPELKYASDPII 641
GIP QLGTGILK+RQR++ LPE KY DPI+
Sbjct: 801 GIPKQLGTGILKVRQRLQDLPEFKYQPDPIL 831
>gb|EMS65535.1| DNA-directed RNA polymerase III subunit RPC1 [Triticum urartu]
Length = 689
Score = 280 bits (715), Expect = 5e-73
Identities = 138/211 (65%), Positives = 170/211 (80%)
Frame = +3
Query: 9 KSKIYTPEVDRRKLLSELHNLKSMLPKVVVKAIPSVERAIIXXXXXXXXXXXXYSLLVEG 188
K +IY D+ KL ELHNLKSMLPK++VK I SVERA++ Y+LLVEG
Sbjct: 478 KLRIYPTGKDKSKLQLELHNLKSMLPKLIVKGISSVERAVVNPVLRRDGTFDRYNLLVEG 537
Query: 189 TNLLGVMGTQGIDGRKTTSNHVIEVQQTLGIEAARKCIVNEIQYTMRSHGMSIDLRHMML 368
TNL+ V+GT G+D ++T SNH++EV +TLGIEAAR+ I++EI+YT ++ M IDLRHMML
Sbjct: 538 TNLMKVLGTPGVDAKRTKSNHILEVNKTLGIEAARRSIIDEIRYTFENNNMMIDLRHMML 597
Query: 369 LADLMTYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNASYAGRDDRIEGVSECIIM 548
LADLMTYKGE+LGIT GI+KMK SVLML+SFE+ +EHLFNA YAGR+D+IEGVSECIIM
Sbjct: 598 LADLMTYKGEILGITAGGIAKMKSSVLMLSSFERASEHLFNALYAGREDQIEGVSECIIM 657
Query: 549 GIPMQLGTGILKLRQRVEKLPELKYASDPII 641
GIPMQLGTGILK+RQR++ LPE KY DPI+
Sbjct: 658 GIPMQLGTGILKVRQRLQDLPEFKYQPDPIL 688
>ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [Amborella trichopoda]
gi|548832896|gb|ERM95665.1| hypothetical protein
AMTR_s00023p00196820 [Amborella trichopoda]
Length = 1383
Score = 275 bits (704), Expect = 9e-72
Identities = 141/212 (66%), Positives = 172/212 (81%)
Frame = +3
Query: 6 DKSKIYTPEVDRRKLLSELHNLKSMLPKVVVKAIPSVERAIIXXXXXXXXXXXXYSLLVE 185
DK KI PE+ R+++L LH L+S+LPK++VK IP+VERA+I +LLVE
Sbjct: 1177 DKLKILLPEIGRKEVLYSLHLLQSLLPKIIVKGIPTVERAVINNVKGKL------NLLVE 1230
Query: 186 GTNLLGVMGTQGIDGRKTTSNHVIEVQQTLGIEAARKCIVNEIQYTMRSHGMSIDLRHMM 365
GTNLL VMGT G+DGR TTSNH++EV+ TLGIEAARK I++EIQYTM+SHGMSIDLRHMM
Sbjct: 1231 GTNLLAVMGTPGVDGRNTTSNHIVEVEGTLGIEAARKSIIDEIQYTMKSHGMSIDLRHMM 1290
Query: 366 LLADLMTYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNASYAGRDDRIEGVSECII 545
LLADLMT++G VLGI RFGI+KMKESVLMLASFE+TA+ LF+A+ GR D I GVSECII
Sbjct: 1291 LLADLMTFRGLVLGIQRFGITKMKESVLMLASFERTADILFDATTRGRVDTIAGVSECII 1350
Query: 546 MGIPMQLGTGILKLRQRVEKLPELKYASDPII 641
MG+PMQ+GTGIL ++QR E+L +L Y DPII
Sbjct: 1351 MGVPMQIGTGILSVQQRPEQLAKLTYGPDPII 1382
>ref|XP_001757221.1| predicted protein [Physcomitrella patens] gi|162691719|gb|EDQ78080.1|
predicted protein [Physcomitrella patens]
Length = 1397
Score = 273 bits (698), Expect = 4e-71
Identities = 139/212 (65%), Positives = 168/212 (79%)
Frame = +3
Query: 6 DKSKIYTPEVDRRKLLSELHNLKSMLPKVVVKAIPSVERAIIXXXXXXXXXXXXYSLLVE 185
DK + P+ D+ KL LH+L +MLPKV+VK IPSVERA+I Y+LLVE
Sbjct: 1191 DKLIVIPPDQDKGKLYFYLHSLCNMLPKVIVKGIPSVERAVINKEKGV------YNLLVE 1244
Query: 186 GTNLLGVMGTQGIDGRKTTSNHVIEVQQTLGIEAARKCIVNEIQYTMRSHGMSIDLRHMM 365
GTNL VMG G++G+ T SNHVIE +QTLGIEAAR I++EIQYTM SHGM+ID RHMM
Sbjct: 1245 GTNLKAVMGISGVNGKLTKSNHVIEAEQTLGIEAARNVIIDEIQYTMGSHGMTIDARHMM 1304
Query: 366 LLADLMTYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNASYAGRDDRIEGVSECII 545
LLAD+MTYKGEVLGITRFGI+KMK+SVLMLASFEKT +HLF+A+ GR D+IEGVSECII
Sbjct: 1305 LLADVMTYKGEVLGITRFGIAKMKDSVLMLASFEKTTDHLFDAAIHGRVDKIEGVSECII 1364
Query: 546 MGIPMQLGTGILKLRQRVEKLPELKYASDPII 641
MGIPM +GTG+ K+RQ+VEKLP+L Y P++
Sbjct: 1365 MGIPMPIGTGLFKIRQKVEKLPKLSYGPTPLL 1396
>ref|XP_002985715.1| hypothetical protein SELMODRAFT_446351 [Selaginella moellendorffii]
gi|300146624|gb|EFJ13293.1| hypothetical protein
SELMODRAFT_446351 [Selaginella moellendorffii]
Length = 1393
Score = 272 bits (696), Expect = 7e-71
Identities = 136/205 (66%), Positives = 166/205 (80%)
Frame = +3
Query: 24 TPEVDRRKLLSELHNLKSMLPKVVVKAIPSVERAIIXXXXXXXXXXXXYSLLVEGTNLLG 203
TPE DR+K+L LH+L++MLPKV+VK IP+VERA+I Y+LLVEGTNL
Sbjct: 1193 TPESDRKKMLFALHSLQNMLPKVIVKGIPTVERAVINQEKGK------YNLLVEGTNLKA 1246
Query: 204 VMGTQGIDGRKTTSNHVIEVQQTLGIEAARKCIVNEIQYTMRSHGMSIDLRHMMLLADLM 383
VMGT+G+DGR+TTSNH+ E + LGIEAAR I+ EIQYTM SHGMSID RHMMLLAD+M
Sbjct: 1247 VMGTEGVDGRETTSNHIFETVEVLGIEAARNGIIKEIQYTMGSHGMSIDQRHMMLLADVM 1306
Query: 384 TYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNASYAGRDDRIEGVSECIIMGIPMQ 563
TY+GE+LGITRFG++KMK+SVLMLASFEKT +HLF AS GR D+IEGVSECIIMGIPM
Sbjct: 1307 TYRGEILGITRFGMAKMKDSVLMLASFEKTTDHLFAASVHGRTDQIEGVSECIIMGIPMP 1366
Query: 564 LGTGILKLRQRVEKLPELKYASDPI 638
LGTG+ K+RQ+V ++P+L Y P+
Sbjct: 1367 LGTGLFKVRQKVGRIPKLIYGPPPL 1391
>ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Cucumis
sativus]
Length = 1400
Score = 269 bits (687), Expect = 8e-70
Identities = 138/211 (65%), Positives = 161/211 (76%)
Frame = +3
Query: 9 KSKIYTPEVDRRKLLSELHNLKSMLPKVVVKAIPSVERAIIXXXXXXXXXXXXYSLLVEG 188
K ++ + DR KL LH LK+MLP VVVK I +V RA+I +SLLVEG
Sbjct: 1189 KLRVLPQDADRNKLHFNLHFLKNMLPGVVVKGIKTVGRAVIKEEKDKARNAKKFSLLVEG 1248
Query: 189 TNLLGVMGTQGIDGRKTTSNHVIEVQQTLGIEAARKCIVNEIQYTMRSHGMSIDLRHMML 368
T L VMGT+G+DG T SNH+IEVQQ LGIEAARKCI+ EI+YTM SHGMSID+RHMML
Sbjct: 1249 TGLQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMML 1308
Query: 369 LADLMTYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNASYAGRDDRIEGVSECIIM 548
L DLMT++GEVLGITRFGI KM +SVLMLASFEKTA+HLFNAS GRDD+IEGVSEC+IM
Sbjct: 1309 LGDLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIM 1368
Query: 549 GIPMQLGTGILKLRQRVEKLPELKYASDPII 641
GIPM LGTG+LK+RQRV +L Y I+
Sbjct: 1369 GIPMPLGTGMLKVRQRVSVPQQLPYGPPAIL 1399
>gb|EXB53229.1| DNA-directed RNA polymerase III subunit RPC1 [Morus notabilis]
Length = 1179
Score = 266 bits (680), Expect = 5e-69
Identities = 138/212 (65%), Positives = 164/212 (77%), Gaps = 1/212 (0%)
Frame = +3
Query: 9 KSKIYTPEVDRRKLLSELHNLKSMLPKVVVKAIPSVERAIIXXXXXXXXXXXX-YSLLVE 185
K +I E +R KL L L ML ++VK I +VERA+I Y LLVE
Sbjct: 966 KLEILPYESNRSKLYHHLQFLAKMLQNILVKGIKTVERAVISSEKDKKTDISKKYKLLVE 1025
Query: 186 GTNLLGVMGTQGIDGRKTTSNHVIEVQQTLGIEAARKCIVNEIQYTMRSHGMSIDLRHMM 365
GT LLGVMGT+G+DGR T +NH+IEVQQTLGIEAAR CI++EI+YTM+SHGMSID RHMM
Sbjct: 1026 GTGLLGVMGTEGVDGRNTKTNHIIEVQQTLGIEAARTCIIDEIEYTMKSHGMSIDTRHMM 1085
Query: 366 LLADLMTYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNASYAGRDDRIEGVSECII 545
LLAD+MT +GEVLGITRFGI KM +SVLMLASFEKTA+HLFNAS GR+D+IEGVSECII
Sbjct: 1086 LLADVMTSRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGREDKIEGVSECII 1145
Query: 546 MGIPMQLGTGILKLRQRVEKLPELKYASDPII 641
MGIPMQ+GTG++K+RQRV+ P L Y PI+
Sbjct: 1146 MGIPMQIGTGMIKVRQRVDVPPMLSYGPKPIL 1177
>ref|XP_003570766.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Brachypodium distachyon]
Length = 1400
Score = 265 bits (677), Expect = 1e-68
Identities = 132/211 (62%), Positives = 165/211 (78%)
Frame = +3
Query: 9 KSKIYTPEVDRRKLLSELHNLKSMLPKVVVKAIPSVERAIIXXXXXXXXXXXXYSLLVEG 188
K +I+ + LL ELHNLKSMLPKV+VK IP+VERA++ Y+LLVEG
Sbjct: 1188 KLRIHAAGKGKSGLLLELHNLKSMLPKVIVKGIPTVERAVVNPVFRHDKTFDRYNLLVEG 1247
Query: 189 TNLLGVMGTQGIDGRKTTSNHVIEVQQTLGIEAARKCIVNEIQYTMRSHGMSIDLRHMML 368
TNLL V+GT G+D +KT SNH++EV QTLGIEAAR+ I++EI+YT ++ M IDLRHMML
Sbjct: 1248 TNLLAVLGTPGVDAKKTKSNHIMEVSQTLGIEAARRSIIDEIRYTFENNNMMIDLRHMML 1307
Query: 369 LADLMTYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNASYAGRDDRIEGVSECIIM 548
LAD+MT KGEVL +T GI+KMK SVLMLASFE+T +HLFNASYAGR D IEGVSEC+IM
Sbjct: 1308 LADVMTSKGEVLPMTAHGIAKMKTSVLMLASFERTMDHLFNASYAGRVDEIEGVSECVIM 1367
Query: 549 GIPMQLGTGILKLRQRVEKLPELKYASDPII 641
G+PM+ GTGILK++QR+ LPE +Y DP++
Sbjct: 1368 GMPMKPGTGILKVKQRLPDLPEFQYQPDPLV 1398
>ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
X1 [Solanum tuberosum]
Length = 1394
Score = 265 bits (676), Expect = 2e-68
Identities = 138/209 (66%), Positives = 162/209 (77%), Gaps = 4/209 (1%)
Frame = +3
Query: 27 PEVDRRKLLSELHNLKSMLPKVVVKAIPSVERAIIXXXXXXXXXXXX----YSLLVEGTN 194
P+ ++ KL ELH LK+ LP VVVK I +V+RA++ Y LLVEGT
Sbjct: 1181 PQANKDKLHFELHRLKNKLPAVVVKGITTVQRAVVNKEQQKDRKNDVKGETYELLVEGTG 1240
Query: 195 LLGVMGTQGIDGRKTTSNHVIEVQQTLGIEAARKCIVNEIQYTMRSHGMSIDLRHMMLLA 374
LL VMG +G+DGR T SNH++EVQ TLGIEAAR I++EI YTM SHGM+IDLRHMMLLA
Sbjct: 1241 LLAVMGIEGVDGRYTKSNHIMEVQNTLGIEAARVSIIDEINYTMSSHGMTIDLRHMMLLA 1300
Query: 375 DLMTYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNASYAGRDDRIEGVSECIIMGI 554
DLMTYKGEVLGITR G+ KMK+SVLMLASFEKT +HLFNAS GRDD+IEGV+ECIIMGI
Sbjct: 1301 DLMTYKGEVLGITRHGVQKMKDSVLMLASFEKTTDHLFNASVNGRDDKIEGVTECIIMGI 1360
Query: 555 PMQLGTGILKLRQRVEKLPELKYASDPII 641
PM +GTG+ KLRQRVE++ EL Y DPII
Sbjct: 1361 PMTIGTGMFKLRQRVEQV-ELNYQPDPII 1388