BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00026330
         (619 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_008854626.1| RNA polymerase alpha subunit [Curcuma roscoe...   392   e-107
ref|YP_007475736.1| RNA polymerase alpha subunit [Zingiber spect...   385   e-105
gb|AGE93401.1| RNA polymerase alpha subunit [Alpinia zerumbet]        363   3e-98
ref|YP_007475651.1| RNA polymerase alpha subunit [Heliconia coll...   342   6e-92
gb|ABU85470.1| RNA polymerase alpha subunit [Musa acuminata] gi|...   342   6e-92
ref|YP_008854457.1| RNA polymerase alpha subunit [Musa textilis]...   338   5e-91
gb|AHA12956.1| RNA polymerase alpha subunit [Monocostus uniflorus]    335   5e-90
gb|AHA12870.1| RNA polymerase alpha subunit [Maranta leuconeura]      335   6e-90
gb|AHA12787.1| RNA polymerase alpha subunit [Canna indica]            329   4e-88
gb|AHA13042.1| RNA polymerase alpha subunit [Costus pulverulentus]    328   7e-88
ref|YP_008854542.1| RNA polymerase alpha subunit [Ravenala madag...   326   3e-87
gb|AEZ01456.1| RNA polymerase alpha subunit (chloroplast) [Japon...   326   4e-87
gb|AHA13214.1| RNA polymerase alpha subunit [Thaumatococcus dani...   325   5e-87
gb|AHH24305.1| RNA polymerase subunit A (chloroplast) [Japonolir...   325   6e-87
ref|YP_007476079.1| RNA polymerase alpha subunit [Dasypogon brom...   323   2e-86
gb|AEZ49437.1| RNA polymerase alpha subunit, partial [Brocchinia...   321   9e-86
ref|YP_003434007.1| RNA polymerase alpha subunit [Typha latifoli...   319   3e-85
gb|AEZ49460.1| RNA polymerase alpha subunit, partial [Pitcairnia...   319   3e-85
gb|AEZ49455.1| RNA polymerase alpha subunit, partial [Neoastelia...   318   8e-85
gb|AEX94373.1| RNA polymerase alpha subunit (chloroplast) [Anema...   318   8e-85

>ref|YP_008854626.1| RNA polymerase alpha subunit [Curcuma roscoeana]
           gi|557637533|gb|AHA13128.1| RNA polymerase alpha subunit
           [Curcuma roscoeana]
          Length = 343

 Score =  392 bits (1007), Expect = e-107
 Identities = 193/206 (93%), Positives = 193/206 (93%)
 Frame = +2

Query: 2   ANLTEPIDLCIGLQIRRDRGYCTKPTINSQDGSYPIDAVFMPVRNANHSIHSYGNGKEKE 181
           ANLTEPIDLCIGLQIRRDRGYCTKPTINSQDGSYPIDAV MPVRNANHSIHSYGNGKEKE
Sbjct: 137 ANLTEPIDLCIGLQIRRDRGYCTKPTINSQDGSYPIDAVSMPVRNANHSIHSYGNGKEKE 196

Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHGEEEDINFKLKENKNRFILPIFTFQ 361
           EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHGEEEDINFKLKENKNRFILPIFTFQ
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHGEEEDINFKLKENKNRFILPIFTFQ 256

Query: 362 DRLTNLKKNKKEIPLKCIFIDQLELPYRTYNCLKRSNIHTXXXXXXXXXXDLMRIGIEDV 541
           DRLTNLKKNKKEIPLKCIFIDQ ELPYRTYNCLKRSNIHT          DLMRIGIEDV
Sbjct: 257 DRLTNLKKNKKEIPLKCIFIDQSELPYRTYNCLKRSNIHTLLELLSKSKEDLMRIGIEDV 316

Query: 542 KEISDTLRKHF*IDLPKNKFSFFLNP 619
           KEISDTLRKHF IDLPKNKFSFFLNP
Sbjct: 317 KEISDTLRKHFEIDLPKNKFSFFLNP 342


>ref|YP_007475736.1| RNA polymerase alpha subunit [Zingiber spectabile]
           gi|449326215|gb|AGE92800.1| RNA polymerase alpha subunit
           [Zingiber spectabile]
          Length = 339

 Score =  385 bits (990), Expect = e-105
 Identities = 190/203 (93%), Positives = 190/203 (93%)
 Frame = +2

Query: 2   ANLTEPIDLCIGLQIRRDRGYCTKPTINSQDGSYPIDAVFMPVRNANHSIHSYGNGKEKE 181
           ANLTEPIDLCIGLQIRRDRGYCTKPTINSQDGSYPIDAV MPVRNANHSIHSYGNGKEKE
Sbjct: 137 ANLTEPIDLCIGLQIRRDRGYCTKPTINSQDGSYPIDAVSMPVRNANHSIHSYGNGKEKE 196

Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHGEEEDINFKLKENKNRFILPIFTFQ 361
           EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHGEEEDINFKLKENKNRFILPIFTFQ
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHGEEEDINFKLKENKNRFILPIFTFQ 256

Query: 362 DRLTNLKKNKKEIPLKCIFIDQLELPYRTYNCLKRSNIHTXXXXXXXXXXDLMRIGIEDV 541
           DRLTNLKKNKKEIPLKCIFIDQ ELPYRTYNCLKRSNIHT          DLMRIGIEDV
Sbjct: 257 DRLTNLKKNKKEIPLKCIFIDQSELPYRTYNCLKRSNIHTLLELLSKSKEDLMRIGIEDV 316

Query: 542 KEISDTLRKHF*IDLPKNKFSFF 610
           KEISDTLRKHF IDLPKNKFSFF
Sbjct: 317 KEISDTLRKHFEIDLPKNKFSFF 339


>gb|AGE93401.1| RNA polymerase alpha subunit [Alpinia zerumbet]
          Length = 342

 Score =  363 bits (931), Expect = 3e-98
 Identities = 184/206 (89%), Positives = 185/206 (89%), Gaps = 3/206 (1%)
 Frame = +2

Query: 2   ANLTEPIDLCIGLQIRRDRGYCTKPTINSQDGSYPIDAVFMPVRNANHSIHSYGNGKEKE 181
           ANLTEPIDLCIGLQIRRDRGY TK TINSQDGSYPIDAV MPVRNANHSIHS+GNGKEKE
Sbjct: 137 ANLTEPIDLCIGLQIRRDRGYRTKLTINSQDGSYPIDAVSMPVRNANHSIHSFGNGKEKE 196

Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHGEEEDINFKLKENKNRFILPIFTFQ 361
           EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHGEEEDIN KLKENKNRF LPIFTFQ
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHGEEEDINLKLKENKNRFTLPIFTFQ 256

Query: 362 DRLTNLKKNKKEIPLKCIFIDQLELPYRTYNCLKRSNIHTXXXXXXXXXXDLMRI---GI 532
           DRLTNLKKNKKEIPLKCIFIDQ ELPYRTYNCLKRSNIHT          DLMRI    I
Sbjct: 257 DRLTNLKKNKKEIPLKCIFIDQSELPYRTYNCLKRSNIHTLLELLSKSQEDLMRIEYFRI 316

Query: 533 EDVKEISDTLRKHF*IDLPKNKFSFF 610
           EDVKEISDTLRKHF IDLPKNKFSFF
Sbjct: 317 EDVKEISDTLRKHFEIDLPKNKFSFF 342


>ref|YP_007475651.1| RNA polymerase alpha subunit [Heliconia collinsiana]
           gi|449326129|gb|AGE92715.1| RNA polymerase alpha subunit
           [Heliconia collinsiana]
          Length = 339

 Score =  342 bits (876), Expect = 6e-92
 Identities = 175/205 (85%), Positives = 178/205 (86%), Gaps = 3/205 (1%)
 Frame = +2

Query: 2   ANLTEPIDLCIGLQIRRDRGYCTKPTINSQDGSYPIDAVFMPVRNANHSIHSYGNGKEKE 181
           ANLTEPIDLCIGLQIRRDRGY TK T NSQDG YPIDAV MPVRNANHSIHSYGNG EK+
Sbjct: 137 ANLTEPIDLCIGLQIRRDRGYRTKSTTNSQDGCYPIDAVSMPVRNANHSIHSYGNGNEKQ 196

Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHGEEEDINFKLKENKNRFILPIFTFQ 361
           EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLH EEEDINF  KENKNRF LP+FTFQ
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINF--KENKNRFTLPLFTFQ 254

Query: 362 DRLTNLKKNKKEIPLKCIFIDQLELPYRTYNCLKRSNIHTXXXXXXXXXXDLMRI---GI 532
           DRLTNLKKNKKEIPLKCIFIDQ ELP RTYNCLKRSNIHT          DLMRI    I
Sbjct: 255 DRLTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIHTLLDLLGKSQEDLMRIEYFRI 314

Query: 533 EDVKEISDTLRKHF*IDLPKNKFSF 607
           EDVKEISDTL+KHF IDLPKNKFSF
Sbjct: 315 EDVKEISDTLQKHFAIDLPKNKFSF 339


>gb|ABU85470.1| RNA polymerase alpha subunit [Musa acuminata]
           gi|525312490|emb|CCW72408.1| rpoA (chloroplast) [Musa
           acuminata subsp. malaccensis]
          Length = 339

 Score =  342 bits (876), Expect = 6e-92
 Identities = 175/205 (85%), Positives = 179/205 (87%), Gaps = 3/205 (1%)
 Frame = +2

Query: 2   ANLTEPIDLCIGLQIRRDRGYCTKPTINSQDGSYPIDAVFMPVRNANHSIHSYGNGKEKE 181
           ANLTEPIDLCIGLQIRRDRGY TKPT NSQ+GSYPIDAV MPVRNANHSIHSYGNG EK+
Sbjct: 137 ANLTEPIDLCIGLQIRRDRGYRTKPTTNSQNGSYPIDAVSMPVRNANHSIHSYGNGNEKQ 196

Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHGEEEDINFKLKENKNRFILPIFTFQ 361
           EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLH EEEDINF  KENKNRF LPIFTFQ
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINF--KENKNRFTLPIFTFQ 254

Query: 362 DRLTNLKKNKKEIPLKCIFIDQLELPYRTYNCLKRSNIHTXXXXXXXXXXDLMRI---GI 532
           DRLTNLKKNKKEIPLKCIFIDQ ELP RTYNCLKRSNIHT          DLMRI    I
Sbjct: 255 DRLTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIHTLLDLLNKSQEDLMRIEYFRI 314

Query: 533 EDVKEISDTLRKHF*IDLPKNKFSF 607
           EDVKEISDTL+KHF IDLPKN+F F
Sbjct: 315 EDVKEISDTLQKHFAIDLPKNQFLF 339


>ref|YP_008854457.1| RNA polymerase alpha subunit [Musa textilis]
           gi|557636944|gb|AHA12546.1| RNA polymerase alpha subunit
           [Musa textilis]
          Length = 337

 Score =  338 bits (868), Expect = 5e-91
 Identities = 173/203 (85%), Positives = 178/203 (87%), Gaps = 3/203 (1%)
 Frame = +2

Query: 2   ANLTEPIDLCIGLQIRRDRGYCTKPTINSQDGSYPIDAVFMPVRNANHSIHSYGNGKEKE 181
           ANLTEPIDLCIGLQIRRDRGY TKPT NS++GSYPIDAV MPVRNANHSIHSYGNG EK+
Sbjct: 137 ANLTEPIDLCIGLQIRRDRGYRTKPTTNSKNGSYPIDAVSMPVRNANHSIHSYGNGNEKQ 196

Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHGEEEDINFKLKENKNRFILPIFTFQ 361
           EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLH EEEDINF  KENKNRF LPIFTFQ
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINF--KENKNRFTLPIFTFQ 254

Query: 362 DRLTNLKKNKKEIPLKCIFIDQLELPYRTYNCLKRSNIHTXXXXXXXXXXDLMRI---GI 532
           DRLTNLKKNKKEIPLKCIFIDQ ELP RTYNCLKRSNIHT          DLMRI    I
Sbjct: 255 DRLTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIHTLLDLLNKSQEDLMRIEYFRI 314

Query: 533 EDVKEISDTLRKHF*IDLPKNKF 601
           EDVKEISDTL+KHF IDLPKN+F
Sbjct: 315 EDVKEISDTLQKHFAIDLPKNQF 337


>gb|AHA12956.1| RNA polymerase alpha subunit [Monocostus uniflorus]
          Length = 341

 Score =  335 bits (860), Expect = 5e-90
 Identities = 173/207 (83%), Positives = 180/207 (86%), Gaps = 5/207 (2%)
 Frame = +2

Query: 2   ANLTEPIDLCIGLQIRRDRGYCT--KPTINSQDGSYPIDAVFMPVRNANHSIHSYGNGKE 175
           ANLTEPIDLCIGLQIRR+RGY T  KPT+NSQDGSYPIDAV MPVRN NHSIHSYGNG E
Sbjct: 137 ANLTEPIDLCIGLQIRRNRGYRTNTKPTMNSQDGSYPIDAVSMPVRNTNHSIHSYGNGNE 196

Query: 176 KEEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHGEEEDINFKLKENKNRFILPIFT 355
           K+EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLH EEE+INF  KEN+NRF LP+FT
Sbjct: 197 KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENINF--KENQNRFTLPLFT 254

Query: 356 FQDRLTNLKKNKKEIPLKCIFIDQLELPYRTYNCLKRSNIHTXXXXXXXXXXDLMRI--- 526
           FQDRLTNLKKNKKEIPLKCIFIDQ ELP RTYNCLKRSNIHT          DLMRI   
Sbjct: 255 FQDRLTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIHTLLDLLSKSQEDLMRIEYF 314

Query: 527 GIEDVKEISDTLRKHF*IDLPKNKFSF 607
            IEDVKEISDTL+KHF IDLPKNKFSF
Sbjct: 315 RIEDVKEISDTLQKHFAIDLPKNKFSF 341


>gb|AHA12870.1| RNA polymerase alpha subunit [Maranta leuconeura]
          Length = 339

 Score =  335 bits (859), Expect = 6e-90
 Identities = 172/205 (83%), Positives = 177/205 (86%), Gaps = 3/205 (1%)
 Frame = +2

Query: 2   ANLTEPIDLCIGLQIRRDRGYCTKPTINSQDGSYPIDAVFMPVRNANHSIHSYGNGKEKE 181
           ANLTEP DLCIGLQI RD GY TKPTINSQDGSYPIDAV MPVRNANHSIHSYGNG EK+
Sbjct: 137 ANLTEPTDLCIGLQIGRDCGYRTKPTINSQDGSYPIDAVSMPVRNANHSIHSYGNGDEKQ 196

Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHGEEEDINFKLKENKNRFILPIFTFQ 361
           EILFLEIWTNGSLTPKEALYEASRNLIDL IPFLH EEEDINF  KENKN+F LP+FTFQ
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLLIPFLHAEEEDINF--KENKNKFTLPLFTFQ 254

Query: 362 DRLTNLKKNKKEIPLKCIFIDQLELPYRTYNCLKRSNIHTXXXXXXXXXXDLMRI---GI 532
           +RLTNLKKNKKEIPLKCIFIDQ ELP RTYNCLKRSNIHT          DLMRI    I
Sbjct: 255 NRLTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIHTLLDLLSKSREDLMRIEYFRI 314

Query: 533 EDVKEISDTLRKHF*IDLPKNKFSF 607
           EDVKEISDTL+KHF IDLPKNKFSF
Sbjct: 315 EDVKEISDTLQKHFAIDLPKNKFSF 339


>gb|AHA12787.1| RNA polymerase alpha subunit [Canna indica]
          Length = 339

 Score =  329 bits (843), Expect = 4e-88
 Identities = 170/205 (82%), Positives = 173/205 (84%), Gaps = 3/205 (1%)
 Frame = +2

Query: 2   ANLTEPIDLCIGLQIRRDRGYCTKPTINSQDGSYPIDAVFMPVRNANHSIHSYGNGKEKE 181
           ANLTEPID CI LQIRRDRGY TKPT NSQDGSYPIDAV MPVRN NHSIHSYGNG EK 
Sbjct: 137 ANLTEPIDFCIELQIRRDRGYRTKPTTNSQDGSYPIDAVSMPVRNTNHSIHSYGNGDEKR 196

Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHGEEEDINFKLKENKNRFILPIFTFQ 361
           EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLH EEEDINF  KENKN+F LP FTFQ
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINF--KENKNKFTLPPFTFQ 254

Query: 362 DRLTNLKKNKKEIPLKCIFIDQLELPYRTYNCLKRSNIHTXXXXXXXXXXDLMRI---GI 532
           DRLTNLKKNKKEI LKCIFIDQ ELP RTYNCLKRSNIHT          DLMRI    +
Sbjct: 255 DRLTNLKKNKKEILLKCIFIDQSELPSRTYNCLKRSNIHTLLDLLSKSQEDLMRIEYFRM 314

Query: 533 EDVKEISDTLRKHF*IDLPKNKFSF 607
           EDVKEISDTL+KHF IDLPKNKF F
Sbjct: 315 EDVKEISDTLQKHFAIDLPKNKFFF 339


>gb|AHA13042.1| RNA polymerase alpha subunit [Costus pulverulentus]
          Length = 341

 Score =  328 bits (841), Expect = 7e-88
 Identities = 170/207 (82%), Positives = 179/207 (86%), Gaps = 5/207 (2%)
 Frame = +2

Query: 2   ANLTEPIDLCIGLQIRRDRGYCT--KPTINSQDGSYPIDAVFMPVRNANHSIHSYGNGKE 175
           ANLTEPIDLCIGLQIR++RGY T  KPT+NSQDGSYPIDAV MPVRN NHSI+SYGNG E
Sbjct: 137 ANLTEPIDLCIGLQIRKNRGYRTNTKPTMNSQDGSYPIDAVSMPVRNMNHSIYSYGNGNE 196

Query: 176 KEEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHGEEEDINFKLKENKNRFILPIFT 355
           K+EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLH EEE+INF  KENKNRF  P+FT
Sbjct: 197 KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENINF--KENKNRFTPPLFT 254

Query: 356 FQDRLTNLKKNKKEIPLKCIFIDQLELPYRTYNCLKRSNIHTXXXXXXXXXXDLMRI--- 526
           FQDRLTNLKKNKKEIPLKCIFIDQ ELP RTYNCLKRSNI+T          DLMRI   
Sbjct: 255 FQDRLTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIYTLLDLLSKSQEDLMRIEYF 314

Query: 527 GIEDVKEISDTLRKHF*IDLPKNKFSF 607
            IEDVKEISDTL+KHF IDLPKNKFSF
Sbjct: 315 RIEDVKEISDTLQKHFAIDLPKNKFSF 341


>ref|YP_008854542.1| RNA polymerase alpha subunit [Ravenala madagascariensis]
           gi|557637030|gb|AHA12631.1| RNA polymerase alpha subunit
           [Ravenala madagascariensis]
          Length = 340

 Score =  326 bits (836), Expect = 3e-87
 Identities = 171/208 (82%), Positives = 177/208 (85%), Gaps = 6/208 (2%)
 Frame = +2

Query: 2   ANLTEPIDLCIGLQIRRDRGYCTKPTINSQDGSYPIDAVFMPVRNANHSIHSYGNGKEKE 181
           ANLTEPIDLCIGLQIRRDRGY TKPT NSQDGSYPI+AVFMPVRN NHSIHS GN  EK+
Sbjct: 137 ANLTEPIDLCIGLQIRRDRGYRTKPTTNSQDGSYPINAVFMPVRNVNHSIHSSGN--EKQ 194

Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHGEEEDINFKLKENKNRFILPIFTFQ 361
           EILFLEIWTNGSLTPKEALYEASRN IDLFIPFLH EEEDINF  KENKNRF  P+FTFQ
Sbjct: 195 EILFLEIWTNGSLTPKEALYEASRNFIDLFIPFLHAEEEDINF--KENKNRFTPPLFTFQ 252

Query: 362 DRLT---NLKKNKKEIPLKCIFIDQLELPYRTYNCLKRSNIHTXXXXXXXXXXDLMRI-- 526
           DRLT   NLK+NKKEIPLKCIFIDQ ELP+RTYNCLKRSNIHT          DLMRI  
Sbjct: 253 DRLTNLKNLKENKKEIPLKCIFIDQSELPFRTYNCLKRSNIHTLLDLLSKSQEDLMRIEY 312

Query: 527 -GIEDVKEISDTLRKHF*IDLPKNKFSF 607
             IEDVKEISDTL+KHF IDLPKNKFSF
Sbjct: 313 FRIEDVKEISDTLQKHFAIDLPKNKFSF 340


>gb|AEZ01456.1| RNA polymerase alpha subunit (chloroplast) [Japonolirion osense]
          Length = 339

 Score =  326 bits (835), Expect = 4e-87
 Identities = 168/205 (81%), Positives = 173/205 (84%), Gaps = 3/205 (1%)
 Frame = +2

Query: 2   ANLTEPIDLCIGLQIRRDRGYCTKPTINSQDGSYPIDAVFMPVRNANHSIHSYGNGKEKE 181
           ANLTEPIDLCIGLQI+RDRGY  KPT NSQDGSYPIDAV MPVRNANHSIHSYGNG EK+
Sbjct: 137 ANLTEPIDLCIGLQIKRDRGYRMKPTNNSQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQ 196

Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHGEEEDINFKLKENKNRFILPIFTFQ 361
           EILFLEIWTNGSLTPKEAL+EASRNLI LFIPFLH EEEDINF  +ENKNRF LP FTFQ
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLIYLFIPFLHAEEEDINF--EENKNRFTLPFFTFQ 254

Query: 362 DRLTNLKKNKKEIPLKCIFIDQLELPYRTYNCLKRSNIHTXXXXXXXXXXDLMRI---GI 532
           D LTNLKKNKK IP KCIFIDQ ELP RTYNCLKRSNIHT          DLMRI    I
Sbjct: 255 DGLTNLKKNKKGIPFKCIFIDQSELPSRTYNCLKRSNIHTLLDLLSNSQEDLMRIEYFRI 314

Query: 533 EDVKEISDTLRKHF*IDLPKNKFSF 607
           EDVK+I DTLRKHF IDLPKNKFSF
Sbjct: 315 EDVKQILDTLRKHFAIDLPKNKFSF 339


>gb|AHA13214.1| RNA polymerase alpha subunit [Thaumatococcus daniellii]
          Length = 337

 Score =  325 bits (834), Expect = 5e-87
 Identities = 169/203 (83%), Positives = 172/203 (84%), Gaps = 3/203 (1%)
 Frame = +2

Query: 2   ANLTEPIDLCIGLQIRRDRGYCTKPTINSQDGSYPIDAVFMPVRNANHSIHSYGNGKEKE 181
           ANLTEP+DLCIGLQIRRD GY TKPT NSQD SYPIDAV MPV NANHSIHSYGNG EK 
Sbjct: 137 ANLTEPMDLCIGLQIRRDCGYHTKPTTNSQDESYPIDAVSMPVLNANHSIHSYGNGDEKL 196

Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHGEEEDINFKLKENKNRFILPIFTFQ 361
           EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLH EEEDINF  KENKNRF  P+FTFQ
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINF--KENKNRFTPPLFTFQ 254

Query: 362 DRLTNLKKNKKEIPLKCIFIDQLELPYRTYNCLKRSNIHTXXXXXXXXXXDLMRI---GI 532
           DRLTNLKKNKKEIPLKCIFIDQ ELP RTYNCLKRSNIHT          DLMRI    I
Sbjct: 255 DRLTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIHTLLHLLSKSQEDLMRIEYFRI 314

Query: 533 EDVKEISDTLRKHF*IDLPKNKF 601
           EDVKEISD L+KHF IDLPKNKF
Sbjct: 315 EDVKEISDILQKHFAIDLPKNKF 337


>gb|AHH24305.1| RNA polymerase subunit A (chloroplast) [Japonolirion osense]
          Length = 339

 Score =  325 bits (833), Expect = 6e-87
 Identities = 168/205 (81%), Positives = 173/205 (84%), Gaps = 3/205 (1%)
 Frame = +2

Query: 2   ANLTEPIDLCIGLQIRRDRGYCTKPTINSQDGSYPIDAVFMPVRNANHSIHSYGNGKEKE 181
           ANLTEPIDLCIGLQI+RDRGY  KPT NSQDGSYPIDAV MPVRNANHSIHSYGNG EK+
Sbjct: 137 ANLTEPIDLCIGLQIKRDRGYRMKPTNNSQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQ 196

Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHGEEEDINFKLKENKNRFILPIFTFQ 361
           EILFLEIWTNGSLTPKEAL+EASRNLI LFIPFLH EEEDINF  +ENKNRF LP  TFQ
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLIYLFIPFLHAEEEDINF--EENKNRFTLPFLTFQ 254

Query: 362 DRLTNLKKNKKEIPLKCIFIDQLELPYRTYNCLKRSNIHTXXXXXXXXXXDLMRI---GI 532
           D LTNLKKNKK IPLKCIFIDQ ELP RTYNCLKRSNIHT          DLMRI    I
Sbjct: 255 DGLTNLKKNKKGIPLKCIFIDQSELPSRTYNCLKRSNIHTLLDLLSNSQEDLMRIEYFRI 314

Query: 533 EDVKEISDTLRKHF*IDLPKNKFSF 607
           EDVK+I DTLRKHF IDLPKNKFSF
Sbjct: 315 EDVKQILDTLRKHFAIDLPKNKFSF 339


>ref|YP_007476079.1| RNA polymerase alpha subunit [Dasypogon bromeliifolius]
           gi|374413132|gb|AEZ49442.1| RNA polymerase alpha subunit
           [Dasypogon bromeliifolius] gi|449326562|gb|AGE93143.1|
           RNA polymerase alpha subunit [Dasypogon bromeliifolius]
          Length = 339

 Score =  323 bits (828), Expect = 2e-86
 Identities = 165/205 (80%), Positives = 171/205 (83%), Gaps = 3/205 (1%)
 Frame = +2

Query: 2   ANLTEPIDLCIGLQIRRDRGYCTKPTINSQDGSYPIDAVFMPVRNANHSIHSYGNGKEKE 181
           ANLTEPIDLCI LQI+RDRGY  KPT NSQDGSYPID V MPVRNANHSIH YGNG EK+
Sbjct: 137 ANLTEPIDLCIELQIKRDRGYRIKPTNNSQDGSYPIDVVSMPVRNANHSIHCYGNGNEKQ 196

Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHGEEEDINFKLKENKNRFILPIFTFQ 361
           EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLH EEEDINF  +EN NRF LP +TFQ
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINF--EENNNRFTLPFYTFQ 254

Query: 362 DRLTNLKKNKKEIPLKCIFIDQLELPYRTYNCLKRSNIHTXXXXXXXXXXDLMRIG---I 532
           DRLTNLKKNKKEIPLKCIFIDQ ELP RTYNCLKRS IHT          DLMRI    I
Sbjct: 255 DRLTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSKIHTLLDLLSNSQEDLMRINYFRI 314

Query: 533 EDVKEISDTLRKHF*IDLPKNKFSF 607
           EDVK+I DTL+KHF IDLPK KFSF
Sbjct: 315 EDVKQILDTLQKHFAIDLPKKKFSF 339


>gb|AEZ49437.1| RNA polymerase alpha subunit, partial [Brocchinia micrantha]
          Length = 337

 Score =  321 bits (823), Expect = 9e-86
 Identities = 164/203 (80%), Positives = 172/203 (84%), Gaps = 3/203 (1%)
 Frame = +2

Query: 2   ANLTEPIDLCIGLQIRRDRGYCTKPTINSQDGSYPIDAVFMPVRNANHSIHSYGNGKEKE 181
           ANLTEPIDLCIGLQI+RDRGY  +P  +SQDGSYPIDAV MPVRNANHSIHSYGNG EK+
Sbjct: 137 ANLTEPIDLCIGLQIKRDRGYRMEPINDSQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQ 196

Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHGEEEDINFKLKENKNRFILPIFTFQ 361
           EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLH EEEDINF  +ENKNRF LP  TFQ
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINF--EENKNRFTLPFLTFQ 254

Query: 362 DRLTNLKKNKKEIPLKCIFIDQLELPYRTYNCLKRSNIHTXXXXXXXXXXDLMRI---GI 532
           DRLTNLKKNKK IPL CIFIDQLELP RTYNCLKRSNIHT          DLMRI    +
Sbjct: 255 DRLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRSNIHTLLDLLSNSQEDLMRIEYFRM 314

Query: 533 EDVKEISDTLRKHF*IDLPKNKF 601
           EDVK+I DTL+KHF IDLPKNKF
Sbjct: 315 EDVKQILDTLQKHFAIDLPKNKF 337


>ref|YP_003434007.1| RNA polymerase alpha subunit [Typha latifolia]
           gi|69215826|gb|AAZ03869.1| RNA polymerase alpha chain
           [Typha latifolia] gi|281371804|gb|ADA63731.1| RNA
           polymerase alpha subunit [Typha latifolia]
          Length = 339

 Score =  319 bits (818), Expect = 3e-85
 Identities = 165/205 (80%), Positives = 173/205 (84%), Gaps = 3/205 (1%)
 Frame = +2

Query: 2   ANLTEPIDLCIGLQIRRDRGYCTKPTINSQDGSYPIDAVFMPVRNANHSIHSYGNGKEKE 181
           ANLTEPIDL I LQI+RDRGY  +PT NSQDGSYPIDAV MPVRNANHSIHSYGNG EK+
Sbjct: 137 ANLTEPIDLYIELQIKRDRGYRMEPTNNSQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQ 196

Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHGEEEDINFKLKENKNRFILPIFTFQ 361
           EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLH EEEDINF  +ENKNRF LP  TFQ
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINF--EENKNRFTLPFLTFQ 254

Query: 362 DRLTNLKKNKKEIPLKCIFIDQLELPYRTYNCLKRSNIHTXXXXXXXXXXDLMRI---GI 532
           DRLTNLKKNKK IPL CIFIDQLELP RTYNCLKRSNIHT          DLMRI    +
Sbjct: 255 DRLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRSNIHTLLDLLSNGQEDLMRIEYLRM 314

Query: 533 EDVKEISDTLRKHF*IDLPKNKFSF 607
           EDVK+I DTL+K+F IDLPKNKFSF
Sbjct: 315 EDVKQILDTLQKNFAIDLPKNKFSF 339


>gb|AEZ49460.1| RNA polymerase alpha subunit, partial [Pitcairnia feliciana]
          Length = 337

 Score =  319 bits (818), Expect = 3e-85
 Identities = 164/203 (80%), Positives = 171/203 (84%), Gaps = 3/203 (1%)
 Frame = +2

Query: 2   ANLTEPIDLCIGLQIRRDRGYCTKPTINSQDGSYPIDAVFMPVRNANHSIHSYGNGKEKE 181
           ANLTEPIDLCIGLQI+RDRGY  +P  +SQD SYPIDAV MPVRNANHSIHSYGNG EK+
Sbjct: 137 ANLTEPIDLCIGLQIKRDRGYHMEPINDSQDVSYPIDAVSMPVRNANHSIHSYGNGNEKQ 196

Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHGEEEDINFKLKENKNRFILPIFTFQ 361
           EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLH EEEDINF  +ENKNRF LP  TFQ
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINF--EENKNRFTLPFLTFQ 254

Query: 362 DRLTNLKKNKKEIPLKCIFIDQLELPYRTYNCLKRSNIHTXXXXXXXXXXDLMRI---GI 532
           DRLTNLKKNKK IPL CIFIDQLELP RTYNCLKRSNIHT          DLMRI    +
Sbjct: 255 DRLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRSNIHTLLDLLSNSREDLMRIEYFRM 314

Query: 533 EDVKEISDTLRKHF*IDLPKNKF 601
           EDVK+I DTLRKHF IDLPKNKF
Sbjct: 315 EDVKQILDTLRKHFAIDLPKNKF 337


>gb|AEZ49455.1| RNA polymerase alpha subunit, partial [Neoastelia spectabilis]
          Length = 337

 Score =  318 bits (815), Expect = 8e-85
 Identities = 163/203 (80%), Positives = 169/203 (83%), Gaps = 3/203 (1%)
 Frame = +2

Query: 2   ANLTEPIDLCIGLQIRRDRGYCTKPTINSQDGSYPIDAVFMPVRNANHSIHSYGNGKEKE 181
           ANLTEPIDLCIGLQI+RDRGY  KPT NSQDGSYPIDAV MPVRNANHSIH YGNG EK+
Sbjct: 137 ANLTEPIDLCIGLQIKRDRGYRMKPTNNSQDGSYPIDAVSMPVRNANHSIHCYGNGNEKQ 196

Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHGEEEDINFKLKENKNRFILPIFTFQ 361
           EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLH EEEDINF  +ENKNRF LP+FTFQ
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINF--EENKNRFTLPLFTFQ 254

Query: 362 DRLTNLKKNKKEIPLKCIFIDQLELPYRTYNCLKRSNIHTXXXXXXXXXXDLMRI---GI 532
           DRLTNL K KK IP KCIFIDQ ELP RTYNCLKRSNIHT          DLMRI    I
Sbjct: 255 DRLTNLNKKKKGIPFKCIFIDQSELPSRTYNCLKRSNIHTLLDLLSNSQEDLMRIEYFRI 314

Query: 533 EDVKEISDTLRKHF*IDLPKNKF 601
           EDVK+I DTL+KH  I LPKNKF
Sbjct: 315 EDVKQILDTLQKHLAIHLPKNKF 337


>gb|AEX94373.1| RNA polymerase alpha subunit (chloroplast) [Anemarrhena
           asphodeloides]
          Length = 339

 Score =  318 bits (815), Expect = 8e-85
 Identities = 164/205 (80%), Positives = 173/205 (84%), Gaps = 3/205 (1%)
 Frame = +2

Query: 2   ANLTEPIDLCIGLQIRRDRGYCTKPTINSQDGSYPIDAVFMPVRNANHSIHSYGNGKEKE 181
           ANLTEPIDL IGLQI+RDRGY   PT NSQDGSYPIDAV MPVRNANHSIHSYGNG EK+
Sbjct: 137 ANLTEPIDLRIGLQIKRDRGYRINPTNNSQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQ 196

Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHGEEEDINFKLKENKNRFILPIFTFQ 361
           EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLH EE DI+F  +ENKN+F LP FTFQ
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEGDIHF--EENKNKFTLPFFTFQ 254

Query: 362 DRLTNLKKNKKEIPLKCIFIDQLELPYRTYNCLKRSNIHTXXXXXXXXXXDLMRI---GI 532
            RLTNLKKNKK IPLKCIFIDQLELP RTYNCLKRSNIHT          DLMRI    +
Sbjct: 255 KRLTNLKKNKKGIPLKCIFIDQLELPSRTYNCLKRSNIHTLLDLLSNSQEDLMRIEYFRM 314

Query: 533 EDVKEISDTLRKHF*IDLPKNKFSF 607
           EDVK+I DTL+KHF I+LPKNKFSF
Sbjct: 315 EDVKQILDTLQKHFSINLPKNKFSF 339