BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00026007
         (438 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II su...    58   1e-06
ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 ...    58   1e-06
gb|ESW20162.1| hypothetical protein PHAVU_006G185800g [Phaseolus...    57   3e-06
ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago trunca...    55   7e-06

>ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Solanum
            tuberosum]
          Length = 1191

 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 28/31 (90%), Positives = 29/31 (93%)
 Frame = -3

Query: 436  PYACKLLFQELMAMAIAPRMLTKEQLLAKDQ 344
            PYACKLLFQELMAMAIAPRMLTK+  LAKDQ
Sbjct: 1156 PYACKLLFQELMAMAIAPRMLTKDVKLAKDQ 1186


>ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
            gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName:
            Full=DNA-directed RNA polymerase II subunit RPB2;
            Short=RNA polymerase II subunit 2; Short=RNA polymerase
            II subunit B2; AltName: Full=DNA-directed RNA polymerase
            II 135 kDa polypeptide gi|1049068|gb|AAC49273.1| RNA
            polymerase II subunit 2 [Solanum lycopersicum]
          Length = 1191

 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 28/31 (90%), Positives = 29/31 (93%)
 Frame = -3

Query: 436  PYACKLLFQELMAMAIAPRMLTKEQLLAKDQ 344
            PYACKLLFQELMAMAIAPRMLTK+  LAKDQ
Sbjct: 1156 PYACKLLFQELMAMAIAPRMLTKDVKLAKDQ 1186


>gb|ESW20162.1| hypothetical protein PHAVU_006G185800g [Phaseolus vulgaris]
          Length = 1194

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 28/31 (90%), Positives = 28/31 (90%)
 Frame = -3

Query: 436  PYACKLLFQELMAMAIAPRMLTKEQLLAKDQ 344
            PYACKLLFQELMAMAIAPRMLTKE   AKDQ
Sbjct: 1159 PYACKLLFQELMAMAIAPRMLTKEIKSAKDQ 1189


>ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago truncatula]
            gi|355478420|gb|AES59623.1| DNA-directed RNA polymerase
            [Medicago truncatula]
          Length = 1213

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 27/31 (87%), Positives = 27/31 (87%)
 Frame = -3

Query: 436  PYACKLLFQELMAMAIAPRMLTKEQLLAKDQ 344
            PYACKLLFQELMAMAIAPRMLTKE    KDQ
Sbjct: 1178 PYACKLLFQELMAMAIAPRMLTKEVKAIKDQ 1208