BLASTX nr result
ID: Zingiber23_contig00026006
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00026006
(383 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II su... 65 9e-09
ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 ... 65 9e-09
gb|ESW20162.1| hypothetical protein PHAVU_006G185800g [Phaseolus... 64 3e-08
ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago trunca... 62 6e-08
ref|XP_004499217.1| PREDICTED: DNA-directed RNA polymerase II su... 62 1e-07
ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II su... 62 1e-07
gb|AAY89347.1| RNA polymerase II second largest subunit [Petunia... 62 1e-07
gb|EMJ15758.1| hypothetical protein PRUPE_ppa000425mg [Prunus pe... 61 2e-07
ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, puta... 61 2e-07
gb|AAZ08467.1| RNA polymerase II second largest subunit [Linanth... 60 2e-07
ref|XP_002305136.2| hypothetical protein POPTR_0004s04320g [Popu... 60 3e-07
ref|XP_006859038.1| hypothetical protein AMTR_s00068p00181410 [A... 60 3e-07
gb|ADE76913.1| unknown [Picea sitchensis] 60 3e-07
ref|XP_002305137.1| predicted protein [Populus trichocarpa] 60 3e-07
gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhodode... 60 3e-07
ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II su... 60 4e-07
gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japo... 60 4e-07
ref|NP_001050770.1| Os03g0646800 [Oryza sativa Japonica Group] g... 60 4e-07
gb|ABF97884.1| DNA-directed RNA polymerase II 135 kDa polypeptid... 60 4e-07
ref|XP_004982317.1| PREDICTED: DNA-directed RNA polymerase II su... 59 7e-07
>ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Solanum
tuberosum]
Length = 1191
Score = 65.1 bits (157), Expect = 9e-09
Identities = 31/34 (91%), Positives = 33/34 (97%)
Frame = -3
Query: 381 PYACKLLFQELMAMAIAPRMLTKEQQLAKDQKKK 280
PYACKLLFQELMAMAIAPRMLTK+ +LAKDQKKK
Sbjct: 1156 PYACKLLFQELMAMAIAPRMLTKDVKLAKDQKKK 1189
>ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName:
Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2; AltName: Full=DNA-directed RNA polymerase
II 135 kDa polypeptide gi|1049068|gb|AAC49273.1| RNA
polymerase II subunit 2 [Solanum lycopersicum]
Length = 1191
Score = 65.1 bits (157), Expect = 9e-09
Identities = 31/34 (91%), Positives = 33/34 (97%)
Frame = -3
Query: 381 PYACKLLFQELMAMAIAPRMLTKEQQLAKDQKKK 280
PYACKLLFQELMAMAIAPRMLTK+ +LAKDQKKK
Sbjct: 1156 PYACKLLFQELMAMAIAPRMLTKDVKLAKDQKKK 1189
>gb|ESW20162.1| hypothetical protein PHAVU_006G185800g [Phaseolus vulgaris]
Length = 1194
Score = 63.5 bits (153), Expect = 3e-08
Identities = 31/34 (91%), Positives = 32/34 (94%)
Frame = -3
Query: 381 PYACKLLFQELMAMAIAPRMLTKEQQLAKDQKKK 280
PYACKLLFQELMAMAIAPRMLTKE + AKDQKKK
Sbjct: 1159 PYACKLLFQELMAMAIAPRMLTKEIKSAKDQKKK 1192
>ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355478420|gb|AES59623.1| DNA-directed RNA polymerase
[Medicago truncatula]
Length = 1213
Score = 62.4 bits (150), Expect = 6e-08
Identities = 30/34 (88%), Positives = 31/34 (91%)
Frame = -3
Query: 381 PYACKLLFQELMAMAIAPRMLTKEQQLAKDQKKK 280
PYACKLLFQELMAMAIAPRMLTKE + KDQKKK
Sbjct: 1178 PYACKLLFQELMAMAIAPRMLTKEVKAIKDQKKK 1211
>ref|XP_004499217.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cicer
arietinum]
Length = 1194
Score = 61.6 bits (148), Expect = 1e-07
Identities = 30/34 (88%), Positives = 31/34 (91%)
Frame = -3
Query: 381 PYACKLLFQELMAMAIAPRMLTKEQQLAKDQKKK 280
PYACKLLFQELMAMAIAPRMLTKE + KDQKKK
Sbjct: 1159 PYACKLLFQELMAMAIAPRMLTKEIKSIKDQKKK 1192
>ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
vinifera] gi|147841183|emb|CAN72948.1| hypothetical
protein VITISV_033708 [Vitis vinifera]
gi|302143287|emb|CBI21848.3| unnamed protein product
[Vitis vinifera]
Length = 1193
Score = 61.6 bits (148), Expect = 1e-07
Identities = 30/34 (88%), Positives = 31/34 (91%)
Frame = -3
Query: 381 PYACKLLFQELMAMAIAPRMLTKEQQLAKDQKKK 280
PYACKLLFQELMAMAIAPRMLTKE + KDQKKK
Sbjct: 1158 PYACKLLFQELMAMAIAPRMLTKEVKPPKDQKKK 1191
>gb|AAY89347.1| RNA polymerase II second largest subunit [Petunia x hybrida]
Length = 1195
Score = 61.6 bits (148), Expect = 1e-07
Identities = 29/34 (85%), Positives = 32/34 (94%)
Frame = -3
Query: 381 PYACKLLFQELMAMAIAPRMLTKEQQLAKDQKKK 280
PYACKLLFQELMAMAIAPRMLTK+ + A+DQKKK
Sbjct: 1160 PYACKLLFQELMAMAIAPRMLTKDVKQARDQKKK 1193
>gb|EMJ15758.1| hypothetical protein PRUPE_ppa000425mg [Prunus persica]
Length = 1192
Score = 60.8 bits (146), Expect = 2e-07
Identities = 29/34 (85%), Positives = 32/34 (94%)
Frame = -3
Query: 381 PYACKLLFQELMAMAIAPRMLTKEQQLAKDQKKK 280
PYACKLLFQELM+MAIAPRMLTK+ + AKDQKKK
Sbjct: 1157 PYACKLLFQELMSMAIAPRMLTKDIKPAKDQKKK 1190
>ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase
II subunit, putative [Ricinus communis]
Length = 1194
Score = 60.8 bits (146), Expect = 2e-07
Identities = 29/34 (85%), Positives = 31/34 (91%)
Frame = -3
Query: 381 PYACKLLFQELMAMAIAPRMLTKEQQLAKDQKKK 280
PYACKLLFQELMAMAIAPRMLTK+ + KDQKKK
Sbjct: 1159 PYACKLLFQELMAMAIAPRMLTKDVKPTKDQKKK 1192
>gb|AAZ08467.1| RNA polymerase II second largest subunit [Linanthus californicus]
Length = 733
Score = 60.5 bits (145), Expect = 2e-07
Identities = 28/34 (82%), Positives = 32/34 (94%)
Frame = -3
Query: 381 PYACKLLFQELMAMAIAPRMLTKEQQLAKDQKKK 280
PYACKLLFQELM+MAIAPRM+TK+ + AKDQKKK
Sbjct: 700 PYACKLLFQELMSMAIAPRMMTKDIKQAKDQKKK 733
>ref|XP_002305136.2| hypothetical protein POPTR_0004s04320g [Populus trichocarpa]
gi|550340301|gb|EEE85647.2| hypothetical protein
POPTR_0004s04320g [Populus trichocarpa]
Length = 1215
Score = 60.1 bits (144), Expect = 3e-07
Identities = 29/34 (85%), Positives = 31/34 (91%)
Frame = -3
Query: 381 PYACKLLFQELMAMAIAPRMLTKEQQLAKDQKKK 280
PYACKLLFQELMAMAIAPRMLTK+ + AK QKKK
Sbjct: 1180 PYACKLLFQELMAMAIAPRMLTKDIKQAKSQKKK 1213
>ref|XP_006859038.1| hypothetical protein AMTR_s00068p00181410 [Amborella trichopoda]
gi|548863150|gb|ERN20505.1| hypothetical protein
AMTR_s00068p00181410 [Amborella trichopoda]
Length = 1190
Score = 60.1 bits (144), Expect = 3e-07
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = -3
Query: 381 PYACKLLFQELMAMAIAPRMLTKEQQLAKDQKKK 280
PYACKLLFQELMAMAIAPRM TKE++ KD KKK
Sbjct: 1151 PYACKLLFQELMAMAIAPRMFTKEEKKPKDHKKK 1184
>gb|ADE76913.1| unknown [Picea sitchensis]
Length = 135
Score = 60.1 bits (144), Expect = 3e-07
Identities = 29/34 (85%), Positives = 30/34 (88%)
Frame = -3
Query: 381 PYACKLLFQELMAMAIAPRMLTKEQQLAKDQKKK 280
PYACKLLFQELMAMAIAPRM TKE + KDQKKK
Sbjct: 99 PYACKLLFQELMAMAIAPRMFTKEVKELKDQKKK 132
>ref|XP_002305137.1| predicted protein [Populus trichocarpa]
Length = 421
Score = 60.1 bits (144), Expect = 3e-07
Identities = 29/34 (85%), Positives = 31/34 (91%)
Frame = -3
Query: 381 PYACKLLFQELMAMAIAPRMLTKEQQLAKDQKKK 280
PYACKLLFQELMAMAIAPRMLTK+ + AK QKKK
Sbjct: 386 PYACKLLFQELMAMAIAPRMLTKDIKQAKSQKKK 419
>gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
Length = 1191
Score = 60.1 bits (144), Expect = 3e-07
Identities = 28/34 (82%), Positives = 32/34 (94%)
Frame = -3
Query: 381 PYACKLLFQELMAMAIAPRMLTKEQQLAKDQKKK 280
PYACKLLFQELM+MAIAPRMLTK+ + AKD+KKK
Sbjct: 1156 PYACKLLFQELMSMAIAPRMLTKDVKQAKDKKKK 1189
>ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
sativus] gi|449479313|ref|XP_004155566.1| PREDICTED:
DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
sativus]
Length = 1199
Score = 59.7 bits (143), Expect = 4e-07
Identities = 29/34 (85%), Positives = 30/34 (88%)
Frame = -3
Query: 381 PYACKLLFQELMAMAIAPRMLTKEQQLAKDQKKK 280
PYACKLLFQELMAMAIAPRM TKE + KDQKKK
Sbjct: 1164 PYACKLLFQELMAMAIAPRMFTKEIKPLKDQKKK 1197
>gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japonica Group]
Length = 1218
Score = 59.7 bits (143), Expect = 4e-07
Identities = 27/34 (79%), Positives = 31/34 (91%)
Frame = -3
Query: 381 PYACKLLFQELMAMAIAPRMLTKEQQLAKDQKKK 280
PYACKLLFQELMAMAIAPRMLT++ + KDQKK+
Sbjct: 1185 PYACKLLFQELMAMAIAPRMLTQDNKTGKDQKKR 1218
>ref|NP_001050770.1| Os03g0646800 [Oryza sativa Japonica Group]
gi|113549241|dbj|BAF12684.1| Os03g0646800, partial
[Oryza sativa Japonica Group]
Length = 368
Score = 59.7 bits (143), Expect = 4e-07
Identities = 27/34 (79%), Positives = 31/34 (91%)
Frame = -3
Query: 381 PYACKLLFQELMAMAIAPRMLTKEQQLAKDQKKK 280
PYACKLLFQELMAMAIAPRMLT++ + KDQKK+
Sbjct: 335 PYACKLLFQELMAMAIAPRMLTQDNKTGKDQKKR 368
>gb|ABF97884.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative,
expressed [Oryza sativa Japonica Group]
gi|125545063|gb|EAY91202.1| hypothetical protein
OsI_12811 [Oryza sativa Indica Group]
Length = 1222
Score = 59.7 bits (143), Expect = 4e-07
Identities = 27/34 (79%), Positives = 31/34 (91%)
Frame = -3
Query: 381 PYACKLLFQELMAMAIAPRMLTKEQQLAKDQKKK 280
PYACKLLFQELMAMAIAPRMLT++ + KDQKK+
Sbjct: 1189 PYACKLLFQELMAMAIAPRMLTQDNKTGKDQKKR 1222
>ref|XP_004982317.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like isoform
X2 [Setaria italica]
Length = 1190
Score = 58.9 bits (141), Expect = 7e-07
Identities = 27/34 (79%), Positives = 30/34 (88%)
Frame = -3
Query: 381 PYACKLLFQELMAMAIAPRMLTKEQQLAKDQKKK 280
PYACKLLFQELMAMAIAPRMLT + + KDQKK+
Sbjct: 1157 PYACKLLFQELMAMAIAPRMLTHDMKTGKDQKKR 1190