BLASTX nr result
ID: Zingiber23_contig00025497
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00025497
(397 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004296978.1| PREDICTED: DNA topoisomerase 3-beta-1-like [... 90 4e-16
ref|XP_006358794.1| PREDICTED: DNA topoisomerase 3-beta-1-like i... 89 6e-16
ref|XP_006358793.1| PREDICTED: DNA topoisomerase 3-beta-1-like i... 89 6e-16
gb|EEE69993.1| hypothetical protein OsJ_29901 [Oryza sativa Japo... 88 1e-15
gb|EEC84829.1| hypothetical protein OsI_31918 [Oryza sativa Indi... 88 1e-15
ref|NP_001063578.1| Os09g0500600 [Oryza sativa Japonica Group] g... 88 1e-15
ref|XP_004248022.1| PREDICTED: DNA topoisomerase 3-beta-1-like [... 87 2e-15
ref|XP_006661399.1| PREDICTED: DNA topoisomerase 3-beta-1-like [... 87 2e-15
gb|ESW35784.1| hypothetical protein PHAVU_001G264300g [Phaseolus... 87 2e-15
ref|XP_003538536.1| PREDICTED: DNA topoisomerase 3-beta-1-like [... 87 3e-15
ref|NP_180760.2| DNA topoisomerase, type IA, core [Arabidopsis t... 86 4e-15
ref|NP_001031463.1| DNA topoisomerase, type IA, core [Arabidopsi... 86 4e-15
dbj|BAD95240.1| putative DNA topoisomerase III beta [Arabidopsis... 86 4e-15
gb|AAD15404.1| putative DNA topoisomerase III beta [Arabidopsis ... 86 4e-15
gb|EOY05077.1| DNA topoisomerase, type IA, core [Theobroma cacao] 86 5e-15
ref|XP_003578369.1| PREDICTED: DNA topoisomerase 3-beta-1-like [... 85 9e-15
ref|XP_002881210.1| DNA topoisomerase family protein [Arabidopsi... 85 9e-15
ref|XP_004957260.1| PREDICTED: DNA topoisomerase 3-beta-1-like [... 85 1e-14
ref|XP_002460479.1| hypothetical protein SORBIDRAFT_02g029000 [S... 85 1e-14
ref|NP_001169181.1| uncharacterized protein LOC100383032 [Zea ma... 85 1e-14
>ref|XP_004296978.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Fragaria vesca subsp.
vesca]
Length = 862
Score = 89.7 bits (221), Expect = 4e-16
Identities = 47/78 (60%), Positives = 49/78 (62%)
Frame = -2
Query: 396 STIIEVDFNKKTTPLADGATLHEGCILCDELLHSLVEMKHXXXXXXXXXXXXXXXXXXXX 217
STIIEVDFNKKTTPL DGATL+ GCILCDELLHSLVEMK+
Sbjct: 785 STIIEVDFNKKTTPLEDGATLYSGCILCDELLHSLVEMKYGKSFFRGSRGRGRGSRRGRG 844
Query: 216 XXXXGAKNVDPKMSFRDF 163
K VDPKMSFRDF
Sbjct: 845 RGRGTGKMVDPKMSFRDF 862
>ref|XP_006358794.1| PREDICTED: DNA topoisomerase 3-beta-1-like isoform X2 [Solanum
tuberosum]
Length = 801
Score = 89.0 bits (219), Expect = 6e-16
Identities = 48/78 (61%), Positives = 49/78 (62%)
Frame = -2
Query: 396 STIIEVDFNKKTTPLADGATLHEGCILCDELLHSLVEMKHXXXXXXXXXXXXXXXXXXXX 217
STIIEVDFNKKTTPL DGATLH+GCILCDELLHSLVEMKH
Sbjct: 725 STIIEVDFNKKTTPLKDGATLHKGCILCDELLHSLVEMKH-GRSFSRHGRRGRGRGRGRG 783
Query: 216 XXXXGAKNVDPKMSFRDF 163
K DPKMSFRDF
Sbjct: 784 RGRGSTKQQDPKMSFRDF 801
>ref|XP_006358793.1| PREDICTED: DNA topoisomerase 3-beta-1-like isoform X1 [Solanum
tuberosum]
Length = 860
Score = 89.0 bits (219), Expect = 6e-16
Identities = 48/78 (61%), Positives = 49/78 (62%)
Frame = -2
Query: 396 STIIEVDFNKKTTPLADGATLHEGCILCDELLHSLVEMKHXXXXXXXXXXXXXXXXXXXX 217
STIIEVDFNKKTTPL DGATLH+GCILCDELLHSLVEMKH
Sbjct: 784 STIIEVDFNKKTTPLKDGATLHKGCILCDELLHSLVEMKH-GRSFSRHGRRGRGRGRGRG 842
Query: 216 XXXXGAKNVDPKMSFRDF 163
K DPKMSFRDF
Sbjct: 843 RGRGSTKQQDPKMSFRDF 860
>gb|EEE69993.1| hypothetical protein OsJ_29901 [Oryza sativa Japonica Group]
Length = 729
Score = 87.8 bits (216), Expect = 1e-15
Identities = 47/82 (57%), Positives = 51/82 (62%), Gaps = 4/82 (4%)
Frame = -2
Query: 396 STIIEVDFNKKTTPLADGATLHEGCILCDELLHSLVEMKH----XXXXXXXXXXXXXXXX 229
STIIEVDFNKKTTPL DGATLHEGCILCDELLHSL+EMKH
Sbjct: 648 STIIEVDFNKKTTPLKDGATLHEGCILCDELLHSLIEMKHGKSFFMRRGRGRGRGRGRGR 707
Query: 228 XXXXXXXXGAKNVDPKMSFRDF 163
+++ DPKMSFRDF
Sbjct: 708 GSSRGRRGSSRHDDPKMSFRDF 729
>gb|EEC84829.1| hypothetical protein OsI_31918 [Oryza sativa Indica Group]
Length = 866
Score = 87.8 bits (216), Expect = 1e-15
Identities = 47/82 (57%), Positives = 51/82 (62%), Gaps = 4/82 (4%)
Frame = -2
Query: 396 STIIEVDFNKKTTPLADGATLHEGCILCDELLHSLVEMKH----XXXXXXXXXXXXXXXX 229
STIIEVDFNKKTTPL DGATLHEGCILCDELLHSL+EMKH
Sbjct: 785 STIIEVDFNKKTTPLKDGATLHEGCILCDELLHSLIEMKHGKSFFMRRGRGRGRGRGRGR 844
Query: 228 XXXXXXXXGAKNVDPKMSFRDF 163
+++ DPKMSFRDF
Sbjct: 845 GSSRGRRGSSRHDDPKMSFRDF 866
>ref|NP_001063578.1| Os09g0500600 [Oryza sativa Japonica Group]
gi|113631811|dbj|BAF25492.1| Os09g0500600 [Oryza sativa
Japonica Group] gi|215695029|dbj|BAG90220.1| unnamed
protein product [Oryza sativa Japonica Group]
Length = 866
Score = 87.8 bits (216), Expect = 1e-15
Identities = 47/82 (57%), Positives = 51/82 (62%), Gaps = 4/82 (4%)
Frame = -2
Query: 396 STIIEVDFNKKTTPLADGATLHEGCILCDELLHSLVEMKH----XXXXXXXXXXXXXXXX 229
STIIEVDFNKKTTPL DGATLHEGCILCDELLHSL+EMKH
Sbjct: 785 STIIEVDFNKKTTPLKDGATLHEGCILCDELLHSLIEMKHGKSFFMRRGRGRGRGRGRGR 844
Query: 228 XXXXXXXXGAKNVDPKMSFRDF 163
+++ DPKMSFRDF
Sbjct: 845 GSSRGRRGSSRHDDPKMSFRDF 866
>ref|XP_004248022.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Solanum lycopersicum]
Length = 864
Score = 87.4 bits (215), Expect = 2e-15
Identities = 49/81 (60%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Frame = -2
Query: 396 STIIEVDFNKKTTPLADGATLHEGCILCDELLHSLVEMKHXXXXXXXXXXXXXXXXXXXX 217
STIIEVDFNKKTTPL DGATLH+GCILCDELLHSLVEMKH
Sbjct: 784 STIIEVDFNKKTTPLKDGATLHKGCILCDELLHSLVEMKHGRSFSRHGRRGRGRGRGRGG 843
Query: 216 XXXXGA---KNVDPKMSFRDF 163
G K DPKMSFRDF
Sbjct: 844 YRGRGRGSNKQQDPKMSFRDF 864
>ref|XP_006661399.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Oryza brachyantha]
Length = 983
Score = 87.0 bits (214), Expect = 2e-15
Identities = 47/84 (55%), Positives = 51/84 (60%), Gaps = 6/84 (7%)
Frame = -2
Query: 396 STIIEVDFNKKTTPLADGATLHEGCILCDELLHSLVEMKH------XXXXXXXXXXXXXX 235
STIIEVDFNKKTTPL DGATLHEGCILCDELLHSL+EMKH
Sbjct: 900 STIIEVDFNKKTTPLKDGATLHEGCILCDELLHSLIEMKHGKSFFMRRGRGRGRGRGRGR 959
Query: 234 XXXXXXXXXXGAKNVDPKMSFRDF 163
+++ DPKMSFRDF
Sbjct: 960 GSSHGRGRRGNSRHDDPKMSFRDF 983
>gb|ESW35784.1| hypothetical protein PHAVU_001G264300g [Phaseolus vulgaris]
Length = 862
Score = 87.0 bits (214), Expect = 2e-15
Identities = 48/79 (60%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Frame = -2
Query: 396 STIIEVDFNKKTTPLADGATLHEGCILCDELLHSLVEMKH-XXXXXXXXXXXXXXXXXXX 220
S+IIEVDFNKKTTPL DGATLH GCILCDELLHSLVEMKH
Sbjct: 784 SSIIEVDFNKKTTPLEDGATLHRGCILCDELLHSLVEMKHGRSFRHMGSRGRGRGRKGGR 843
Query: 219 XXXXXGAKNVDPKMSFRDF 163
G K +DPKMSFRDF
Sbjct: 844 GRGRGGGKMMDPKMSFRDF 862
>ref|XP_003538536.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Glycine max]
Length = 863
Score = 86.7 bits (213), Expect = 3e-15
Identities = 48/80 (60%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Frame = -2
Query: 396 STIIEVDFNKKTTPLADGATLHEGCILCDELLHSLVEMKH--XXXXXXXXXXXXXXXXXX 223
S+IIEVDFNKKTTPL DGATLH GCILCDELLHSLVEMKH
Sbjct: 784 SSIIEVDFNKKTTPLEDGATLHHGCILCDELLHSLVEMKHGRSFRHMSSRGRGRGARKGG 843
Query: 222 XXXXXXGAKNVDPKMSFRDF 163
G K +DPKMSFRDF
Sbjct: 844 RGRGRGGGKMMDPKMSFRDF 863
>ref|NP_180760.2| DNA topoisomerase, type IA, core [Arabidopsis thaliana]
gi|330253525|gb|AEC08619.1| DNA topoisomerase, type IA,
core [Arabidopsis thaliana]
Length = 865
Score = 86.3 bits (212), Expect = 4e-15
Identities = 44/78 (56%), Positives = 51/78 (65%)
Frame = -2
Query: 396 STIIEVDFNKKTTPLADGATLHEGCILCDELLHSLVEMKHXXXXXXXXXXXXXXXXXXXX 217
S IIE+DFNKKTTPL +GATLH+GC+LCDELL SLVE+KH
Sbjct: 788 SAIIEIDFNKKTTPLENGATLHQGCVLCDELLLSLVEVKHGRSFVRRGGRGRGRGRGRGR 847
Query: 216 XXXXGAKNVDPKMSFRDF 163
G+K+VDPKMSFRDF
Sbjct: 848 GGRRGSKSVDPKMSFRDF 865
>ref|NP_001031463.1| DNA topoisomerase, type IA, core [Arabidopsis thaliana]
gi|51969720|dbj|BAD43552.1| putative DNA topoisomerase
III beta [Arabidopsis thaliana]
gi|51969988|dbj|BAD43686.1| putative DNA topoisomerase
III beta [Arabidopsis thaliana]
gi|330253526|gb|AEC08620.1| DNA topoisomerase, type IA,
core [Arabidopsis thaliana]
Length = 838
Score = 86.3 bits (212), Expect = 4e-15
Identities = 44/78 (56%), Positives = 51/78 (65%)
Frame = -2
Query: 396 STIIEVDFNKKTTPLADGATLHEGCILCDELLHSLVEMKHXXXXXXXXXXXXXXXXXXXX 217
S IIE+DFNKKTTPL +GATLH+GC+LCDELL SLVE+KH
Sbjct: 761 SAIIEIDFNKKTTPLENGATLHQGCVLCDELLLSLVEVKHGRSFVRRGGRGRGRGRGRGR 820
Query: 216 XXXXGAKNVDPKMSFRDF 163
G+K+VDPKMSFRDF
Sbjct: 821 GGRRGSKSVDPKMSFRDF 838
>dbj|BAD95240.1| putative DNA topoisomerase III beta [Arabidopsis thaliana]
Length = 865
Score = 86.3 bits (212), Expect = 4e-15
Identities = 44/78 (56%), Positives = 51/78 (65%)
Frame = -2
Query: 396 STIIEVDFNKKTTPLADGATLHEGCILCDELLHSLVEMKHXXXXXXXXXXXXXXXXXXXX 217
S IIE+DFNKKTTPL +GATLH+GC+LCDELL SLVE+KH
Sbjct: 788 SAIIEIDFNKKTTPLENGATLHQGCVLCDELLLSLVEVKHGRSFVRRGGRGRGRGRGRGR 847
Query: 216 XXXXGAKNVDPKMSFRDF 163
G+K+VDPKMSFRDF
Sbjct: 848 GGRRGSKSVDPKMSFRDF 865
>gb|AAD15404.1| putative DNA topoisomerase III beta [Arabidopsis thaliana]
Length = 836
Score = 86.3 bits (212), Expect = 4e-15
Identities = 44/78 (56%), Positives = 51/78 (65%)
Frame = -2
Query: 396 STIIEVDFNKKTTPLADGATLHEGCILCDELLHSLVEMKHXXXXXXXXXXXXXXXXXXXX 217
S IIE+DFNKKTTPL +GATLH+GC+LCDELL SLVE+KH
Sbjct: 759 SAIIEIDFNKKTTPLENGATLHQGCVLCDELLLSLVEVKHGRSFVRRGGRGRGRGRGRGR 818
Query: 216 XXXXGAKNVDPKMSFRDF 163
G+K+VDPKMSFRDF
Sbjct: 819 GGRRGSKSVDPKMSFRDF 836
>gb|EOY05077.1| DNA topoisomerase, type IA, core [Theobroma cacao]
Length = 868
Score = 85.9 bits (211), Expect = 5e-15
Identities = 47/82 (57%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Frame = -2
Query: 396 STIIEVDFNKKTTPLADGATLHEGCILCDELLHSLVEMKH----XXXXXXXXXXXXXXXX 229
STIIEVDFNKKTTPL DGATLH GCILCDELLHS VE+KH
Sbjct: 787 STIIEVDFNKKTTPLEDGATLHTGCILCDELLHSFVEVKHGKSFSRGLGGRGRGRGTRRG 846
Query: 228 XXXXXXXXGAKNVDPKMSFRDF 163
K VDPKMSFRDF
Sbjct: 847 GYRGRGRAAGKQVDPKMSFRDF 868
>ref|XP_003578369.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Brachypodium distachyon]
Length = 868
Score = 85.1 bits (209), Expect = 9e-15
Identities = 46/84 (54%), Positives = 50/84 (59%), Gaps = 6/84 (7%)
Frame = -2
Query: 396 STIIEVDFNKKTTPLADGATLHEGCILCDELLHSLVEMKH------XXXXXXXXXXXXXX 235
STIIEVDFNKK TPL DGATLHEGCILCDELLHSL+EMKH
Sbjct: 785 STIIEVDFNKKATPLEDGATLHEGCILCDELLHSLIEMKHGKSFFMRRGRGRGRGRARGR 844
Query: 234 XXXXXXXXXXGAKNVDPKMSFRDF 163
+++ DPKMSFRDF
Sbjct: 845 GGSRGRGRRGNSRHDDPKMSFRDF 868
>ref|XP_002881210.1| DNA topoisomerase family protein [Arabidopsis lyrata subsp. lyrata]
gi|297327049|gb|EFH57469.1| DNA topoisomerase family
protein [Arabidopsis lyrata subsp. lyrata]
Length = 865
Score = 85.1 bits (209), Expect = 9e-15
Identities = 44/78 (56%), Positives = 50/78 (64%)
Frame = -2
Query: 396 STIIEVDFNKKTTPLADGATLHEGCILCDELLHSLVEMKHXXXXXXXXXXXXXXXXXXXX 217
S IIE+DFNKKTTPL +GATLH+GC+LCDELL SLVE+KH
Sbjct: 788 SAIIEIDFNKKTTPLENGATLHQGCVLCDELLLSLVEVKHGRSFVRRGGRGRGRGRGRGR 847
Query: 216 XXXXGAKNVDPKMSFRDF 163
G+K VDPKMSFRDF
Sbjct: 848 GGRRGSKAVDPKMSFRDF 865
>ref|XP_004957260.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Setaria italica]
Length = 868
Score = 84.7 bits (208), Expect = 1e-14
Identities = 46/84 (54%), Positives = 50/84 (59%), Gaps = 6/84 (7%)
Frame = -2
Query: 396 STIIEVDFNKKTTPLADGATLHEGCILCDELLHSLVEMKH------XXXXXXXXXXXXXX 235
STIIEVDFNKKTTPL DGATLHEGCILCD+LLHSL+EMKH
Sbjct: 785 STIIEVDFNKKTTPLQDGATLHEGCILCDDLLHSLIEMKHGKSFFMRRGRGRGRGRGRGR 844
Query: 234 XXXXXXXXXXGAKNVDPKMSFRDF 163
++ DPKMSFRDF
Sbjct: 845 GSSRGRGRRGNSRYDDPKMSFRDF 868
>ref|XP_002460479.1| hypothetical protein SORBIDRAFT_02g029000 [Sorghum bicolor]
gi|241923856|gb|EER97000.1| hypothetical protein
SORBIDRAFT_02g029000 [Sorghum bicolor]
Length = 866
Score = 84.7 bits (208), Expect = 1e-14
Identities = 46/84 (54%), Positives = 50/84 (59%), Gaps = 6/84 (7%)
Frame = -2
Query: 396 STIIEVDFNKKTTPLADGATLHEGCILCDELLHSLVEMKH------XXXXXXXXXXXXXX 235
STIIEVDFNKKTTPL DGATLHEGCILCD+LLHSL+EMKH
Sbjct: 783 STIIEVDFNKKTTPLQDGATLHEGCILCDDLLHSLIEMKHGKSFFMRRGRGRGRGRGRGR 842
Query: 234 XXXXXXXXXXGAKNVDPKMSFRDF 163
++ DPKMSFRDF
Sbjct: 843 GSSRGRGRLGNSRYDDPKMSFRDF 866
>ref|NP_001169181.1| uncharacterized protein LOC100383032 [Zea mays]
gi|223975359|gb|ACN31867.1| unknown [Zea mays]
Length = 246
Score = 84.7 bits (208), Expect = 1e-14
Identities = 46/84 (54%), Positives = 50/84 (59%), Gaps = 6/84 (7%)
Frame = -2
Query: 396 STIIEVDFNKKTTPLADGATLHEGCILCDELLHSLVEMKH------XXXXXXXXXXXXXX 235
STIIEVDFNKKTTPL DGATLHEGCILCD+LLHSL+EMKH
Sbjct: 163 STIIEVDFNKKTTPLQDGATLHEGCILCDDLLHSLIEMKHGKSFFIRRGRGRGRGRGRGR 222
Query: 234 XXXXXXXXXXGAKNVDPKMSFRDF 163
++ DPKMSFRDF
Sbjct: 223 GSSRGRGRRGNSRYDDPKMSFRDF 246