BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00022428
         (838 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EMJ04424.1| hypothetical protein PRUPE_ppa000868mg [Prunus pe...   236   8e-60
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   235   2e-59
ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   234   2e-59
ref|XP_006453567.1| hypothetical protein CICLE_v10007333mg [Citr...   234   4e-59
ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citr...   234   4e-59
ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   233   5e-59
ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   231   2e-58
ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   231   3e-58
ref|XP_002528405.1| DNA-directed RNA polymerase 3B, chloroplast ...   229   1e-57
sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras...   228   3e-57
ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   228   3e-57
sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymeras...   227   5e-57
ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   226   8e-57
gb|EOY31498.1| DNA/RNA polymerases superfamily protein isoform 3...   223   9e-56
gb|EOY31496.1| DNA/RNA polymerases superfamily protein isoform 1...   223   9e-56
ref|XP_003563329.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   218   2e-54
gb|EOY31497.1| DNA/RNA polymerases superfamily protein isoform 2...   217   5e-54
ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Popu...   217   5e-54
gb|AAB01085.2| single-subunit RNA polymerase C [Triticum aestivum]    215   1e-53
ref|XP_002325119.1| DNA-directed RNA polymerase family protein [...   214   2e-53

>gb|EMJ04424.1| hypothetical protein PRUPE_ppa000868mg [Prunus persica]
          Length = 976

 Score =  236 bits (602), Expect = 8e-60
 Identities = 141/278 (50%), Positives = 177/278 (63%), Gaps = 1/278 (0%)
 Frame = -2

Query: 831 NGANFRSPWRGPGLGLDYPTEELKMVFFEEPIWVSPKYSIE-FDAARKIKRLDSLREERR 655
           N  NF+ P       L  P E    +F ++P W++  +    +  A +  +L+S   ERR
Sbjct: 80  NSMNFQIPMSE--FHLITPQESAPRIFIQDPPWIASLFLKGIYKRANQELKLESKEIERR 137

Query: 654 KYNSLRRRQIKAETEVWERAVQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIER 475
            YN LRRRQIKAETE WER V EYK LEKVM EKKLAP+LPYV++LFLGWFEPLR+AI R
Sbjct: 138 NYNVLRRRQIKAETEAWERMVDEYKDLEKVMREKKLAPNLPYVKALFLGWFEPLREAIAR 197

Query: 474 DQRLQKTKRQKAAYAEHIGLLPADKMAVIVMHKMMGLLMXXXXXXXXXXXXQAAVQIGEA 295
           +Q+ Q+TK+ KAA+A HI LLPADKMA+IVMHKMMGL+M            QAAV IG A
Sbjct: 198 EQKTQQTKKHKAAFAPHIDLLPADKMALIVMHKMMGLVM-VGNQDGCVQVVQAAVHIGMA 256

Query: 294 IEQEFKIQAYLAKSKRPGRRNIGNDRNAILEKHEEIXXXXXXXXXXXXXLIEVKKLLKNE 115
           IEQE +I ++L K+K   ++  G      L K +EI             L EV+KLL  E
Sbjct: 257 IEQEVRIHSFLEKTKNLQKKKTGVADEDGLSKEKEILRKRVNGLIRRKRLNEVQKLLIKE 316

Query: 114 LEIESWGRDGQAKLGCRLIELLLESAFVQVGSDRLEDT 1
            E++ WGRD QAKLG RLIELL E+A+VQ    +L D+
Sbjct: 317 -EMKPWGRDKQAKLGSRLIELLTETAYVQPPLSQLADS 353


>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
           vinifera]
          Length = 979

 Score =  235 bits (599), Expect = 2e-59
 Identities = 136/263 (51%), Positives = 177/263 (67%), Gaps = 7/263 (2%)
 Frame = -2

Query: 771 EELKMVFFEEPIWVSPKYSIEFDAARKIKR------LDSLREERRKYNSLRRRQIKAETE 610
           E +  +F ++P W+S    +  D   + +R      L+    ERR Y  LRRRQ+KAETE
Sbjct: 99  ESIPRIFVQDPPWISS--FLFHDWCERNRRTGQNVKLEFRETERRNYGLLRRRQVKAETE 156

Query: 609 VWERAVQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYA 430
            WER V+EY+++E+ M EKKLAP+LPYV++LFLGWFEPLR+AI+++QR Q+TK+QKAAYA
Sbjct: 157 AWERMVEEYREIEREMCEKKLAPNLPYVKALFLGWFEPLREAIDKEQRAQRTKKQKAAYA 216

Query: 429 EHIGLLPADKMAVIVMHKMMGLLMXXXXXXXXXXXXQAAVQIGEAIEQEFKIQAYLAKSK 250
            HI LLPADKMAVIVMHKMMGL+M            QAAVQIG AIEQE +I ++L K+K
Sbjct: 217 PHIELLPADKMAVIVMHKMMGLVM-MGHEEGCVRVVQAAVQIGMAIEQEVRIHSFLEKTK 275

Query: 249 RPGR-RNIGNDRNAILEKHEEIXXXXXXXXXXXXXLIEVKKLLKNELEIESWGRDGQAKL 73
              R + +G+ +  + EK  EI             +IEV+KL+KNE EI  WGRD QAKL
Sbjct: 276 NFERHKTVGHSQEGLREK--EILRKRVKSFIRKKKIIEVQKLVKNE-EITPWGRDTQAKL 332

Query: 72  GCRLIELLLESAFVQVGSDRLED 4
           G RLIELL E+A+VQ   ++  D
Sbjct: 333 GSRLIELLTETAYVQTPVNQSAD 355


>ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Citrus sinensis]
          Length = 1009

 Score =  234 bits (598), Expect = 2e-59
 Identities = 130/249 (52%), Positives = 170/249 (68%), Gaps = 1/249 (0%)
 Frame = -2

Query: 771 EELKMVFFEEPIWVSPKYSIEFDAARKIKRLDSLRE-ERRKYNSLRRRQIKAETEVWERA 595
           E  + +F ++P W S   SI      K  +L   RE ++RK+N LRRRQ+K ETE WER 
Sbjct: 134 EPRRRIFVQDPPWFS---SIFLKGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERM 190

Query: 594 VQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYAEHIGL 415
           V EYK+LE  M+EK+LAP+LP+++ LFLGWF PLR+AIER+Q++Q+TK+QKAAYA HI L
Sbjct: 191 VDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLREAIEREQKMQRTKKQKAAYAPHIEL 250

Query: 414 LPADKMAVIVMHKMMGLLMXXXXXXXXXXXXQAAVQIGEAIEQEFKIQAYLAKSKRPGRR 235
           LPADK+AVIVMHKMMGL+M            QAAV IG AIEQE +I ++L K+K   R+
Sbjct: 251 LPADKVAVIVMHKMMGLVM-AGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRK 309

Query: 234 NIGNDRNAILEKHEEIXXXXXXXXXXXXXLIEVKKLLKNELEIESWGRDGQAKLGCRLIE 55
            I  D   +L K +E+             ++E +KLLKNE E + WGRD QAKLG RL+E
Sbjct: 310 KIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNE-ETKPWGRDTQAKLGSRLVE 368

Query: 54  LLLESAFVQ 28
           LL+E+A+VQ
Sbjct: 369 LLIETAYVQ 377


>ref|XP_006453567.1| hypothetical protein CICLE_v10007333mg [Citrus clementina]
           gi|557556793|gb|ESR66807.1| hypothetical protein
           CICLE_v10007333mg [Citrus clementina]
          Length = 986

 Score =  234 bits (596), Expect = 4e-59
 Identities = 130/249 (52%), Positives = 169/249 (67%), Gaps = 1/249 (0%)
 Frame = -2

Query: 771 EELKMVFFEEPIWVSPKYSIEFDAARKIKRLDSLRE-ERRKYNSLRRRQIKAETEVWERA 595
           E  + +F ++P W S   SI      K  +L   RE ++RK+N LRRRQ+K ETE WER 
Sbjct: 137 EPRRRIFVQDPPWFS---SIFLKGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERM 193

Query: 594 VQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYAEHIGL 415
           V EYK+LE  M+EK+LAP+LP+++ LFLGWF PL +AIER+Q++Q+TK+QKAAYA HI L
Sbjct: 194 VDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIEL 253

Query: 414 LPADKMAVIVMHKMMGLLMXXXXXXXXXXXXQAAVQIGEAIEQEFKIQAYLAKSKRPGRR 235
           LPADKMAVIVMHKMMGL+M            QAAV IG AIEQE +I ++L K+K   R+
Sbjct: 254 LPADKMAVIVMHKMMGLVM-AGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRK 312

Query: 234 NIGNDRNAILEKHEEIXXXXXXXXXXXXXLIEVKKLLKNELEIESWGRDGQAKLGCRLIE 55
            I  D   +L K +E+             ++E +KLLKNE E + WGRD QAKLG RL+E
Sbjct: 313 KIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNE-ETKPWGRDTQAKLGSRLVE 371

Query: 54  LLLESAFVQ 28
           LL+E+A+VQ
Sbjct: 372 LLIETAYVQ 380


>ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citrus clementina]
           gi|557556792|gb|ESR66806.1| hypothetical protein
           CICLE_v10007333mg [Citrus clementina]
          Length = 1012

 Score =  234 bits (596), Expect = 4e-59
 Identities = 130/249 (52%), Positives = 169/249 (67%), Gaps = 1/249 (0%)
 Frame = -2

Query: 771 EELKMVFFEEPIWVSPKYSIEFDAARKIKRLDSLRE-ERRKYNSLRRRQIKAETEVWERA 595
           E  + +F ++P W S   SI      K  +L   RE ++RK+N LRRRQ+K ETE WER 
Sbjct: 137 EPRRRIFVQDPPWFS---SIFLKGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERM 193

Query: 594 VQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYAEHIGL 415
           V EYK+LE  M+EK+LAP+LP+++ LFLGWF PL +AIER+Q++Q+TK+QKAAYA HI L
Sbjct: 194 VDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIEL 253

Query: 414 LPADKMAVIVMHKMMGLLMXXXXXXXXXXXXQAAVQIGEAIEQEFKIQAYLAKSKRPGRR 235
           LPADKMAVIVMHKMMGL+M            QAAV IG AIEQE +I ++L K+K   R+
Sbjct: 254 LPADKMAVIVMHKMMGLVM-AGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRK 312

Query: 234 NIGNDRNAILEKHEEIXXXXXXXXXXXXXLIEVKKLLKNELEIESWGRDGQAKLGCRLIE 55
            I  D   +L K +E+             ++E +KLLKNE E + WGRD QAKLG RL+E
Sbjct: 313 KIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNE-ETKPWGRDTQAKLGSRLVE 371

Query: 54  LLLESAFVQ 28
           LL+E+A+VQ
Sbjct: 372 LLIETAYVQ 380


>ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Cucumis sativus]
          Length = 975

 Score =  233 bits (595), Expect = 5e-59
 Identities = 132/249 (53%), Positives = 171/249 (68%), Gaps = 1/249 (0%)
 Frame = -2

Query: 771 EELKMVFFEEPIWVSPKYSIE-FDAARKIKRLDSLREERRKYNSLRRRQIKAETEVWERA 595
           E  K +F ++P W++  +    +   +K  +L+ +  E+RKYN LRRRQIKAETE WE+ 
Sbjct: 99  ESSKRIFIQDPPWIASLFLKGLYKCVQKEVKLEFMEIEKRKYNLLRRRQIKAETEAWEKM 158

Query: 594 VQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYAEHIGL 415
           V+EYK+LE+ M EKKLAP+LPYV+ LFLGWFEPL++AIE +Q+ Q++K+QKAA+A HI L
Sbjct: 159 VEEYKELEREMCEKKLAPNLPYVKKLFLGWFEPLKNAIEEEQKTQRSKKQKAAFAPHIEL 218

Query: 414 LPADKMAVIVMHKMMGLLMXXXXXXXXXXXXQAAVQIGEAIEQEFKIQAYLAKSKRPGRR 235
           L ADKMAVIVM+KMMGLLM            QAAVQIG AIEQE +IQ+ L K++   R 
Sbjct: 219 LSADKMAVIVMYKMMGLLM-MAAQDGCVQVVQAAVQIGGAIEQEVRIQSILEKARSNQRT 277

Query: 234 NIGNDRNAILEKHEEIXXXXXXXXXXXXXLIEVKKLLKNELEIESWGRDGQAKLGCRLIE 55
            +  D    L K +E+             L EV+KLLK E E ++WGRD QAKLG RLIE
Sbjct: 278 KVRADTEC-LTKEKEVLRKQVNGLIRRRKLKEVQKLLKKE-EFKAWGRDTQAKLGSRLIE 335

Query: 54  LLLESAFVQ 28
           LL+ESAF+Q
Sbjct: 336 LLIESAFIQ 344


>ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Fragaria vesca subsp. vesca]
          Length = 973

 Score =  231 bits (590), Expect = 2e-58
 Identities = 131/252 (51%), Positives = 169/252 (67%), Gaps = 1/252 (0%)
 Frame = -2

Query: 756 VFFEEPIWVSPKY-SIEFDAARKIKRLDSLREERRKYNSLRRRQIKAETEVWERAVQEYK 580
           +F ++P W++  +    F    K  +++S   +RRKYN LRRRQIKAETE WE+ V++YK
Sbjct: 100 IFIQDPPWIASLFLKGMFKKVNKELKVESKEIDRRKYNLLRRRQIKAETEAWEKMVEDYK 159

Query: 579 QLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYAEHIGLLPADK 400
            LE+VM EKKLAPSLPYV++LFLGWFEPLR+AI ++Q+ Q+TK+ K A+A HI LLPADK
Sbjct: 160 DLERVMREKKLAPSLPYVKALFLGWFEPLREAIAKEQKAQQTKKHKQAFAPHIDLLPADK 219

Query: 399 MAVIVMHKMMGLLMXXXXXXXXXXXXQAAVQIGEAIEQEFKIQAYLAKSKRPGRRNIGND 220
           MA+IVMHK+MGL+M            QAAV IG AIEQE +I ++L KSK   R+     
Sbjct: 220 MALIVMHKLMGLVM-MGNQDGCVQVVQAAVHIGMAIEQEVRIHSFLEKSKSLQRKKTSVA 278

Query: 219 RNAILEKHEEIXXXXXXXXXXXXXLIEVKKLLKNELEIESWGRDGQAKLGCRLIELLLES 40
               L K +EI             L+EV+KLLK E +++ WGRD QAKLG RLIELL E+
Sbjct: 279 DEDGLSKEKEILRKRVNGLIRRKRLVEVQKLLKKE-DMKPWGRDTQAKLGSRLIELLTET 337

Query: 39  AFVQVGSDRLED 4
           A VQ   D+L D
Sbjct: 338 AHVQPPLDQLAD 349


>ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Cucumis sativus]
          Length = 975

 Score =  231 bits (588), Expect = 3e-58
 Identities = 131/249 (52%), Positives = 170/249 (68%), Gaps = 1/249 (0%)
 Frame = -2

Query: 771 EELKMVFFEEPIWVSPKYSIE-FDAARKIKRLDSLREERRKYNSLRRRQIKAETEVWERA 595
           E  K +F ++P W++  +    +   +K  +L+ +  E+RKYN LRRRQIKAETE WE+ 
Sbjct: 99  ESSKRIFIQDPPWIASLFLKGLYKCVQKEVKLEFMEIEKRKYNLLRRRQIKAETEAWEKM 158

Query: 594 VQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYAEHIGL 415
           V+EYK+LE+ M EKKLAP+LPYV+ LFLGWFEPL++AIE +Q+ Q++K+QKAA+A HI L
Sbjct: 159 VEEYKELEREMCEKKLAPNLPYVKKLFLGWFEPLKNAIEEEQKTQRSKKQKAAFAPHIEL 218

Query: 414 LPADKMAVIVMHKMMGLLMXXXXXXXXXXXXQAAVQIGEAIEQEFKIQAYLAKSKRPGRR 235
           L ADKMA IVM+KMMGLLM            QAAVQIG AIEQE +IQ+ L K++   R 
Sbjct: 219 LSADKMAGIVMYKMMGLLM-MAAQDGCVQVVQAAVQIGGAIEQEVRIQSILEKARSNQRT 277

Query: 234 NIGNDRNAILEKHEEIXXXXXXXXXXXXXLIEVKKLLKNELEIESWGRDGQAKLGCRLIE 55
            +  D    L K +E+             L EV+KLLK E E ++WGRD QAKLG RLIE
Sbjct: 278 KVRADTEC-LTKEKEVLRKQVNGLIRRRKLKEVQKLLKKE-EFKAWGRDTQAKLGSRLIE 335

Query: 54  LLLESAFVQ 28
           LL+ESAF+Q
Sbjct: 336 LLIESAFIQ 344


>ref|XP_002528405.1| DNA-directed RNA polymerase 3B, chloroplast precursor, putative
           [Ricinus communis] gi|223532193|gb|EEF33998.1|
           DNA-directed RNA polymerase 3B, chloroplast precursor,
           putative [Ricinus communis]
          Length = 1000

 Score =  229 bits (583), Expect = 1e-57
 Identities = 132/251 (52%), Positives = 166/251 (66%), Gaps = 1/251 (0%)
 Frame = -2

Query: 777 PTEELKMVFFEEPIWVSPKYSIE-FDAARKIKRLDSLREERRKYNSLRRRQIKAETEVWE 601
           P E  + VF ++P W+S  +    +    K  +L+    E+RKYN LRRRQI+ ETE WE
Sbjct: 107 PEESSRRVFIQDPPWISALFFKGLYKIPNKEVKLEFKDIEKRKYNLLRRRQIREETEAWE 166

Query: 600 RAVQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYAEHI 421
           R V+EYK L K M E+KLAP+LPYV+ LFLGWFEPL++ I+ +Q LQ++K+ KAA+A HI
Sbjct: 167 RMVEEYKALVKEMCERKLAPNLPYVKGLFLGWFEPLKEGIKSEQNLQRSKKNKAAFAPHI 226

Query: 420 GLLPADKMAVIVMHKMMGLLMXXXXXXXXXXXXQAAVQIGEAIEQEFKIQAYLAKSKRPG 241
            LLPADKMAVIVMHKM+GLLM            QAAVQIG AIEQE +I  +L K+K   
Sbjct: 227 ELLPADKMAVIVMHKMVGLLM-VGHEDGCVPLVQAAVQIGMAIEQEVRIHNFLEKTKNYQ 285

Query: 240 RRNIGNDRNAILEKHEEIXXXXXXXXXXXXXLIEVKKLLKNELEIESWGRDGQAKLGCRL 61
           R+   +     L K +EI             LIEV+KL+KNE E++ WGRD QAKLG RL
Sbjct: 286 RKKTISGAQESLGKEKEILRKRVNSLIRRKKLIEVQKLVKNE-EMKPWGRDTQAKLGSRL 344

Query: 60  IELLLESAFVQ 28
           IELL E+AFVQ
Sbjct: 345 IELLTETAFVQ 355


>sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic;
           AltName: Full=NictaRpoT3-tom; AltName: Full=T7
           bacteriophage-type single subunit RNA polymerase 3B;
           Flags: Precursor gi|21425667|emb|CAC95021.2| chloroplast
           RNA polymerase [Nicotiana tabacum]
          Length = 977

 Score =  228 bits (580), Expect = 3e-57
 Identities = 127/261 (48%), Positives = 165/261 (63%), Gaps = 4/261 (1%)
 Frame = -2

Query: 771 EELKMVFFEEPIWVSPKYS----IEFDAARKIKRLDSLREERRKYNSLRRRQIKAETEVW 604
           E  K VF ++P WVS  +     +     + ++R     E RR+Y  LRRRQIKAETE W
Sbjct: 95  ESNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEAW 154

Query: 603 ERAVQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYAEH 424
           E+ V+EY++LE+ M EKKLAP+LPYV+ L LGWFEPLR AIE++Q  + T + +AA+A H
Sbjct: 155 EQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPH 214

Query: 423 IGLLPADKMAVIVMHKMMGLLMXXXXXXXXXXXXQAAVQIGEAIEQEFKIQAYLAKSKRP 244
           I  LPADKMAVIVMHK+MGLLM            QAAVQIG A+E E +I  +L K+K+ 
Sbjct: 215 IDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKL 274

Query: 243 GRRNIGNDRNAILEKHEEIXXXXXXXXXXXXXLIEVKKLLKNELEIESWGRDGQAKLGCR 64
            +   G      + K   I             ++EV+KL+K+E E ESWGRD QAKLGCR
Sbjct: 275 QKHMTGAQSQEDMSKETMILRKRVKSLIKRNRVVEVRKLMKSE-EPESWGRDTQAKLGCR 333

Query: 63  LIELLLESAFVQVGSDRLEDT 1
           L+ELL E+A+VQ   D+  DT
Sbjct: 334 LLELLTETAYVQRPVDQSADT 354


>ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Solanum lycopersicum]
          Length = 1007

 Score =  228 bits (580), Expect = 3e-57
 Identities = 127/269 (47%), Positives = 167/269 (62%), Gaps = 4/269 (1%)
 Frame = -2

Query: 795 GLGLDYPTEELKMVFFEEPIWVSPKYS----IEFDAARKIKRLDSLREERRKYNSLRRRQ 628
           G  L    E  K VF ++P WVS  +     +     + ++R     E RR+Y  LRRRQ
Sbjct: 118 GYPLVLQKESNKRVFIQDPPWVSSLFMNNLFVRAKQVKGVRREFREIERRRRYAMLRRRQ 177

Query: 627 IKAETEVWERAVQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKR 448
           IKAETE WE+ V+EY++LE+ M EKKLAP+LPYV+ L LGWFEPLR AIER+Q  + T++
Sbjct: 178 IKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLMLGWFEPLRQAIEREQNAEMTQK 237

Query: 447 QKAAYAEHIGLLPADKMAVIVMHKMMGLLMXXXXXXXXXXXXQAAVQIGEAIEQEFKIQA 268
            + AYA HI  LPADKMAVIVMHK+MGLLM            QAAVQIG A+E E +I  
Sbjct: 238 HRTAYAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHN 297

Query: 267 YLAKSKRPGRRNIGNDRNAILEKHEEIXXXXXXXXXXXXXLIEVKKLLKNELEIESWGRD 88
           ++ K+K+  +   G      + +   I             ++EV+KL+++E E ESWGRD
Sbjct: 298 FMEKTKKHQKHMTGAQGQEDMSRETMILRKRVKSLIKRNRVVEVRKLMQSE-EPESWGRD 356

Query: 87  GQAKLGCRLIELLLESAFVQVGSDRLEDT 1
            QAKLGCRL+ELL E+A+VQ   D+  DT
Sbjct: 357 TQAKLGCRLLELLTETAYVQPPVDQSADT 385


>sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic;
           AltName: Full=NsRpoT-C; AltName: Full=T7
           bacteriophage-type single subunit RNA polymerase 3;
           Flags: Precursor gi|59800203|sp|P69243.1|RPO3A_TOBAC
           RecName: Full=DNA-directed RNA polymerase 3A,
           chloroplastic; AltName: Full=NictaRpoT3-syl; AltName:
           Full=T7 bacteriophage-type single subunit RNA polymerase
           3A; Flags: Precursor gi|21425641|emb|CAC82576.3|
           phage-type RNA polymerase [Nicotiana sylvestris]
           gi|21425679|emb|CAC95027.2| plastid RNA polymerase
           [Nicotiana tabacum] gi|24475541|dbj|BAC22693.1| T7
           bacteriophage-type single subunit RNA polymerase
           [Nicotiana sylvestris] gi|24475543|dbj|BAC22694.1| T7
           bacteriophage-type single subunit RNA polymerase
           [Nicotiana sylvestris]
          Length = 977

 Score =  227 bits (578), Expect = 5e-57
 Identities = 126/261 (48%), Positives = 165/261 (63%), Gaps = 4/261 (1%)
 Frame = -2

Query: 771 EELKMVFFEEPIWVSPKYS----IEFDAARKIKRLDSLREERRKYNSLRRRQIKAETEVW 604
           E  K VF ++P WVS  +     +     + ++R     E RR+Y  LRRRQIKAETE W
Sbjct: 96  ESNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEAW 155

Query: 603 ERAVQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYAEH 424
           E+ V+EY++LE+ M EKKLAP+LPYV+ L LGWFEPLR AIE++Q  + T + +AA+A H
Sbjct: 156 EQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPH 215

Query: 423 IGLLPADKMAVIVMHKMMGLLMXXXXXXXXXXXXQAAVQIGEAIEQEFKIQAYLAKSKRP 244
           I  LPADKMAVIVMHK+MGLLM            QAAVQIG A+E E +I  +L K+K+ 
Sbjct: 216 IDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKL 275

Query: 243 GRRNIGNDRNAILEKHEEIXXXXXXXXXXXXXLIEVKKLLKNELEIESWGRDGQAKLGCR 64
            +   G      + +   I             ++EV+KL+K+E E ESWGRD QAKLGCR
Sbjct: 276 QKHMTGAQSQEDMSRETMILRKRVKSLIKRNRVVEVRKLMKSE-EPESWGRDTQAKLGCR 334

Query: 63  LIELLLESAFVQVGSDRLEDT 1
           L+ELL E+A+VQ   D+  DT
Sbjct: 335 LLELLTETAYVQPPVDQSADT 355


>ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Solanum tuberosum]
          Length = 1015

 Score =  226 bits (576), Expect = 8e-57
 Identities = 126/269 (46%), Positives = 167/269 (62%), Gaps = 4/269 (1%)
 Frame = -2

Query: 795 GLGLDYPTEELKMVFFEEPIWVSPKYS----IEFDAARKIKRLDSLREERRKYNSLRRRQ 628
           G  L    E  K VF ++P WVS  +     +     + ++R     E RR+Y  LRRRQ
Sbjct: 126 GYPLVLQKESNKRVFIQDPPWVSSLFMNSLFVRAKQVKGVRREFREIERRRRYAMLRRRQ 185

Query: 627 IKAETEVWERAVQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKR 448
           IKAETE WE+ V+EY++LE+ M EKKLAP+LPYV+ L LGWFEPLR AIE++Q  + T++
Sbjct: 186 IKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAEMTQK 245

Query: 447 QKAAYAEHIGLLPADKMAVIVMHKMMGLLMXXXXXXXXXXXXQAAVQIGEAIEQEFKIQA 268
            + AYA HI  LPADKMAVIVMHK+MGLLM            QAAVQIG A+E E +I  
Sbjct: 246 HRTAYAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHN 305

Query: 267 YLAKSKRPGRRNIGNDRNAILEKHEEIXXXXXXXXXXXXXLIEVKKLLKNELEIESWGRD 88
           ++ K+K+  +   G      + +   I             ++EV+KL+++E E ESWGRD
Sbjct: 306 FMEKTKKHQKHMSGAQGQEDMSRETMILRKRVKSLIKRNRVVEVRKLMQSE-EPESWGRD 364

Query: 87  GQAKLGCRLIELLLESAFVQVGSDRLEDT 1
            QAKLGCRL+ELL E+A+VQ   D+  DT
Sbjct: 365 TQAKLGCRLLELLTETAYVQPPVDQSADT 393


>gb|EOY31498.1| DNA/RNA polymerases superfamily protein isoform 3 [Theobroma cacao]
          Length = 927

 Score =  223 bits (567), Expect = 9e-56
 Identities = 128/260 (49%), Positives = 171/260 (65%), Gaps = 3/260 (1%)
 Frame = -2

Query: 771 EELKMVFFEEPIWVSPKYSIE-FDAARKIKRLDSLREERRKYNSLRRRQIKAETEVWERA 595
           E    +F ++P W+S  +    +    +  +++    E+RKYN LRRRQ+K ETE WE+ 
Sbjct: 99  ESTPRLFIQDPPWISALFLKGLYKMTNQTVKIEHKEIEKRKYNLLRRRQVKEETEAWEKM 158

Query: 594 VQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQ--KTKRQKAAYAEHI 421
           V+EY++L++ M EKKLAP+LPYV+ LFLGWFEP+R+AI R+Q++Q  K+K+ +AAYA HI
Sbjct: 159 VEEYRELQREMCEKKLAPNLPYVKGLFLGWFEPMREAIAREQKVQKGKSKKLRAAYAPHI 218

Query: 420 GLLPADKMAVIVMHKMMGLLMXXXXXXXXXXXXQAAVQIGEAIEQEFKIQAYLAKSKRPG 241
            LLPADKMAVIVMHKMMGL+M            QAAV IG AIEQE +I  +L K+K   
Sbjct: 219 ELLPADKMAVIVMHKMMGLVM-GAQENGFVQVVQAAVHIGVAIEQEVRIHNFLEKTKNYQ 277

Query: 240 RRNIGNDRNAILEKHEEIXXXXXXXXXXXXXLIEVKKLLKNELEIESWGRDGQAKLGCRL 61
           R+    D    L K +EI             L+EV+KL+KNE EI+ WGRD QAKLG RL
Sbjct: 278 RKKT-TDEVQGLSKEKEILKKRVNSLIRRRRLVEVQKLVKNE-EIKPWGRDAQAKLGSRL 335

Query: 60  IELLLESAFVQVGSDRLEDT 1
           +ELL E+A+VQ   D+  D+
Sbjct: 336 LELLTETAYVQPPIDQSGDS 355


>gb|EOY31496.1| DNA/RNA polymerases superfamily protein isoform 1 [Theobroma cacao]
          Length = 978

 Score =  223 bits (567), Expect = 9e-56
 Identities = 128/260 (49%), Positives = 171/260 (65%), Gaps = 3/260 (1%)
 Frame = -2

Query: 771 EELKMVFFEEPIWVSPKYSIE-FDAARKIKRLDSLREERRKYNSLRRRQIKAETEVWERA 595
           E    +F ++P W+S  +    +    +  +++    E+RKYN LRRRQ+K ETE WE+ 
Sbjct: 99  ESTPRLFIQDPPWISALFLKGLYKMTNQTVKIEHKEIEKRKYNLLRRRQVKEETEAWEKM 158

Query: 594 VQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQ--KTKRQKAAYAEHI 421
           V+EY++L++ M EKKLAP+LPYV+ LFLGWFEP+R+AI R+Q++Q  K+K+ +AAYA HI
Sbjct: 159 VEEYRELQREMCEKKLAPNLPYVKGLFLGWFEPMREAIAREQKVQKGKSKKLRAAYAPHI 218

Query: 420 GLLPADKMAVIVMHKMMGLLMXXXXXXXXXXXXQAAVQIGEAIEQEFKIQAYLAKSKRPG 241
            LLPADKMAVIVMHKMMGL+M            QAAV IG AIEQE +I  +L K+K   
Sbjct: 219 ELLPADKMAVIVMHKMMGLVM-GAQENGFVQVVQAAVHIGVAIEQEVRIHNFLEKTKNYQ 277

Query: 240 RRNIGNDRNAILEKHEEIXXXXXXXXXXXXXLIEVKKLLKNELEIESWGRDGQAKLGCRL 61
           R+    D    L K +EI             L+EV+KL+KNE EI+ WGRD QAKLG RL
Sbjct: 278 RKKT-TDEVQGLSKEKEILKKRVNSLIRRRRLVEVQKLVKNE-EIKPWGRDAQAKLGSRL 335

Query: 60  IELLLESAFVQVGSDRLEDT 1
           +ELL E+A+VQ   D+  D+
Sbjct: 336 LELLTETAYVQPPIDQSGDS 355


>ref|XP_003563329.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Brachypodium distachyon]
          Length = 943

 Score =  218 bits (555), Expect = 2e-54
 Identities = 117/239 (48%), Positives = 161/239 (67%), Gaps = 1/239 (0%)
 Frame = -2

Query: 714 IEFDAARKIKRLDSLREERR-KYNSLRRRQIKAETEVWERAVQEYKQLEKVMLEKKLAPS 538
           +E +  R I+R  +    RR ++  LR+RQ+KAETE W RA +EY+QLE+ ML++ LAPS
Sbjct: 86  VEEELERGIEREKARERARRAEHRRLRQRQVKAETEAWARAAEEYRQLEREMLDRNLAPS 145

Query: 537 LPYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYAEHIGLLPADKMAVIVMHKMMGLLM 358
           LPYV+SLFLGWFEPLRDAI RDQ +Q+ KR K  YA+++ LLPA+K++VIVMHKMMGLLM
Sbjct: 146 LPYVKSLFLGWFEPLRDAIARDQEVQRRKRVKHVYAKYLLLLPAEKVSVIVMHKMMGLLM 205

Query: 357 XXXXXXXXXXXXQAAVQIGEAIEQEFKIQAYLAKSKRPGRRNIGNDRNAILEKHEEIXXX 178
                       QAA  IGEA+E+EFK+QA+  K+++ G+     + +  L K +     
Sbjct: 206 SNKDGCGSVRVVQAAHSIGEAVEREFKVQAFFQKTRKKGK---NGENDPALGKEQAKCRK 262

Query: 177 XXXXXXXXXXLIEVKKLLKNELEIESWGRDGQAKLGCRLIELLLESAFVQVGSDRLEDT 1
                     L E +KL++ E+E+E WG + Q KLG RLIELLL+SAFVQ  +D++ D+
Sbjct: 263 LVKSLVKRRKLTEAQKLVQQEIELEEWGTEAQVKLGTRLIELLLDSAFVQSPADQIPDS 321


>gb|EOY31497.1| DNA/RNA polymerases superfamily protein isoform 2 [Theobroma cacao]
          Length = 857

 Score =  217 bits (552), Expect = 5e-54
 Identities = 123/223 (55%), Positives = 156/223 (69%), Gaps = 2/223 (0%)
 Frame = -2

Query: 663 ERRKYNSLRRRQIKAETEVWERAVQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDA 484
           E+RKYN LRRRQ+K ETE WE+ V+EY++L++ M EKKLAP+LPYV+ LFLGWFEP+R+A
Sbjct: 14  EKRKYNLLRRRQVKEETEAWEKMVEEYRELQREMCEKKLAPNLPYVKGLFLGWFEPMREA 73

Query: 483 IERDQRLQ--KTKRQKAAYAEHIGLLPADKMAVIVMHKMMGLLMXXXXXXXXXXXXQAAV 310
           I R+Q++Q  K+K+ +AAYA HI LLPADKMAVIVMHKMMGL+M            QAAV
Sbjct: 74  IAREQKVQKGKSKKLRAAYAPHIELLPADKMAVIVMHKMMGLVM-GAQENGFVQVVQAAV 132

Query: 309 QIGEAIEQEFKIQAYLAKSKRPGRRNIGNDRNAILEKHEEIXXXXXXXXXXXXXLIEVKK 130
            IG AIEQE +I  +L K+K   R+    D    L K +EI             L+EV+K
Sbjct: 133 HIGVAIEQEVRIHNFLEKTKNYQRKKT-TDEVQGLSKEKEILKKRVNSLIRRRRLVEVQK 191

Query: 129 LLKNELEIESWGRDGQAKLGCRLIELLLESAFVQVGSDRLEDT 1
           L+KNE EI+ WGRD QAKLG RL+ELL E+A+VQ   D+  D+
Sbjct: 192 LVKNE-EIKPWGRDAQAKLGSRLLELLTETAYVQPPIDQSGDS 233


>ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Populus trichocarpa]
           gi|222854390|gb|EEE91937.1| hypothetical protein
           POPTR_0006s19490g [Populus trichocarpa]
          Length = 982

 Score =  217 bits (552), Expect = 5e-54
 Identities = 127/256 (49%), Positives = 166/256 (64%), Gaps = 1/256 (0%)
 Frame = -2

Query: 771 EELKMVFFEEPIWVSPKY-SIEFDAARKIKRLDSLREERRKYNSLRRRQIKAETEVWERA 595
           E  K VF  +  W+S  Y       A K  +L+    E+RKYN LRRRQI+ ETE WER 
Sbjct: 104 ESSKRVFIRDSPWISALYWKGTHKIANKKVKLELKDIEKRKYNLLRRRQIREETEAWERM 163

Query: 594 VQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYAEHIGL 415
            +EY  L K M E+KLAP+LPYV+SLFLGWFEPL++AIER+Q+L+K+K+QK+A++ +I L
Sbjct: 164 AEEYTGLVKEMCERKLAPNLPYVKSLFLGWFEPLKEAIEREQKLEKSKKQKSAFSPNIEL 223

Query: 414 LPADKMAVIVMHKMMGLLMXXXXXXXXXXXXQAAVQIGEAIEQEFKIQAYLAKSKRPGRR 235
           LPADKMAVIVMHKMMGL+M            QAAVQIG AIEQE +I  +L K+K   R+
Sbjct: 224 LPADKMAVIVMHKMMGLVM-VGHEDGCVRVVQAAVQIGIAIEQEVRIHNFLEKTKNHQRK 282

Query: 234 NIGNDRNAILEKHEEIXXXXXXXXXXXXXLIEVKKLLKNELEIESWGRDGQAKLGCRLIE 55
              +D    ++K +E+             L+EV+ L+  + E + W RD QAKLG RLIE
Sbjct: 283 KTMHDVQESMDKEKEMLRKRVNSLIRRKRLMEVQNLVIQD-ETKPWNRDKQAKLGSRLIE 341

Query: 54  LLLESAFVQVGSDRLE 7
           LL E+A+VQ   D+ E
Sbjct: 342 LLTETAYVQPPVDQSE 357


>gb|AAB01085.2| single-subunit RNA polymerase C [Triticum aestivum]
          Length = 949

 Score =  215 bits (548), Expect = 1e-53
 Identities = 112/226 (49%), Positives = 150/226 (66%)
 Frame = -2

Query: 678 DSLREERRKYNSLRRRQIKAETEVWERAVQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFE 499
           D  R  R  +  LR+RQ+KAETE W RA +EY+QLE  ML++ LAP LPYV+SLFLGWFE
Sbjct: 102 DRERARRADHRRLRQRQVKAETEAWARAAEEYRQLEGEMLDRHLAPQLPYVKSLFLGWFE 161

Query: 498 PLRDAIERDQRLQKTKRQKAAYAEHIGLLPADKMAVIVMHKMMGLLMXXXXXXXXXXXXQ 319
           PLRDA+ RDQ +Q+ KR K  YA+++ LLPA+K+AVIVMHKMMGLLM            Q
Sbjct: 162 PLRDAVARDQDVQRRKRVKHVYAKYLLLLPAEKVAVIVMHKMMGLLMSSKDGCGSVRVVQ 221

Query: 318 AAVQIGEAIEQEFKIQAYLAKSKRPGRRNIGNDRNAILEKHEEIXXXXXXXXXXXXXLIE 139
           AA  IGEA+E+E+K+QA+  K++R  R    ++ +  L+K +                 E
Sbjct: 222 AAHSIGEAVEREYKVQAFFQKTRRKTRSKTESENDPGLDKEQAKCRKLVKSLVRRRKSTE 281

Query: 138 VKKLLKNELEIESWGRDGQAKLGCRLIELLLESAFVQVGSDRLEDT 1
            +KL++ E+E+E WG + Q KLG RLIELLL+SAFVQ  +D+  D+
Sbjct: 282 AQKLVQQEIELEEWGTEAQVKLGTRLIELLLDSAFVQSPADQTPDS 327


>ref|XP_002325119.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
           gi|222866553|gb|EEF03684.1| DNA-directed RNA polymerase
           family protein [Populus trichocarpa]
          Length = 882

 Score =  214 bits (546), Expect = 2e-53
 Identities = 121/257 (47%), Positives = 168/257 (65%), Gaps = 1/257 (0%)
 Frame = -2

Query: 771 EELKMVFFEEPIWVSPKY-SIEFDAARKIKRLDSLREERRKYNSLRRRQIKAETEVWERA 595
           E  K VF ++P W+S  +    +  A K  +++    E+RKYN LRRRQI+ ETE WER 
Sbjct: 4   ESSKKVFIQDPPWISAHFWKGMYKLANKKVKVEFKDIEKRKYNLLRRRQIREETEAWERM 63

Query: 594 VQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYAEHIGL 415
             EY+ L + M E+KLAP+LPYV+ L LGWFEPL++AIE++Q+++K+K+QK+A++ +I L
Sbjct: 64  ADEYRGLVREMCERKLAPNLPYVKGLLLGWFEPLKEAIEKEQKMEKSKKQKSAFSPNIEL 123

Query: 414 LPADKMAVIVMHKMMGLLMXXXXXXXXXXXXQAAVQIGEAIEQEFKIQAYLAKSKRPGRR 235
           LPADKMAVIVMHKMMGLLM            QAAVQIG AIEQE +I  +L K+K   R+
Sbjct: 124 LPADKMAVIVMHKMMGLLM-VGHEDGCVRVVQAAVQIGMAIEQEVRIHNFLEKTKNYQRK 182

Query: 234 NIGNDRNAILEKHEEIXXXXXXXXXXXXXLIEVKKLLKNELEIESWGRDGQAKLGCRLIE 55
              ++    ++K +E+             L+EV+ L+K + E + W R  QAKLG RLIE
Sbjct: 183 KTMHEVQETMDKEKEVLRKRVNSLIRRKRLMEVQNLVKQD-ETKPWSRGTQAKLGSRLIE 241

Query: 54  LLLESAFVQVGSDRLED 4
           LL E+A+VQ   ++ ED
Sbjct: 242 LLTETAYVQPPVNQSED 258