BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00022380
         (830 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004296451.1| PREDICTED: pentatricopeptide repeat-containi...   187   3e-45
gb|EMJ16134.1| hypothetical protein PRUPE_ppa001374mg [Prunus pe...   178   2e-42
gb|EOY31850.1| Tetratricopeptide repeat (TPR)-like superfamily p...   171   3e-40
ref|XP_002533731.1| pentatricopeptide repeat-containing protein,...   168   2e-39
ref|XP_006453335.1| hypothetical protein CICLE_v10007460mg [Citr...   166   9e-39
gb|EXC05166.1| hypothetical protein L484_003973 [Morus notabilis]     166   1e-38
ref|XP_002329666.1| predicted protein [Populus trichocarpa] gi|5...   164   4e-38
ref|XP_003546411.1| PREDICTED: pentatricopeptide repeat-containi...   164   5e-38
ref|XP_006344540.1| PREDICTED: pentatricopeptide repeat-containi...   163   6e-38
gb|ESW10803.1| hypothetical protein PHAVU_009G239200g [Phaseolus...   163   8e-38
ref|XP_004242906.1| PREDICTED: pentatricopeptide repeat-containi...   162   2e-37
ref|XP_002884184.1| pentatricopeptide repeat-containing protein ...   160   5e-37
ref|NP_179484.1| pentatricopeptide repeat-containing protein [Ar...   158   2e-36
ref|XP_003533718.1| PREDICTED: pentatricopeptide repeat-containi...   158   3e-36
ref|XP_002267263.1| PREDICTED: pentatricopeptide repeat-containi...   156   1e-35
emb|CAN75494.1| hypothetical protein VITISV_030525 [Vitis vinifera]   156   1e-35
ref|XP_006409097.1| hypothetical protein EUTSA_v10022551mg [Eutr...   155   1e-35
ref|XP_006296987.1| hypothetical protein CARUB_v10012981mg [Caps...   154   4e-35
ref|XP_004487947.1| PREDICTED: pentatricopeptide repeat-containi...   153   6e-35
ref|XP_003594946.1| Pentatricopeptide repeat-containing protein ...   153   8e-35

>ref|XP_004296451.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Fragaria vesca subsp. vesca]
          Length = 846

 Score =  187 bits (476), Expect = 3e-45
 Identities = 107/275 (38%), Positives = 155/275 (56%), Gaps = 12/275 (4%)
 Frame = +2

Query: 41  MEGAPFPIRPALPNQ-------SPKIVIQXXXXXXXXXXXXXXXXXXXXXXXQHLAKEAR 199
           MEG  FP RP LP Q       SP +                           +++    
Sbjct: 1   MEGTLFPSRPVLPIQTNRPIQPSPPVKFNATTLPPLPQNPSSFPIDSLLHHLLNISSPPN 60

Query: 200 T--TFRP--PPTSKNPSFPSLRLASTSSPREKSSPAPHARLA-GVKDGARVLRDPRLGFL 364
           T    +P  PP   N +FPSL +++ S+P++     P + L    +D AR   D  + FL
Sbjct: 61  TPHNLKPLNPPHQTNDTFPSLHISADSTPKQHQFKKPTSVLVPSFEDKART-EDGLIDFL 119

Query: 365 SAAGQSLLRSIIQCPLVDVISLLEARKDEIFGTDWIGLLKALQVLGNWEKALTLFXXXXX 544
           +  G+ +  SI++ PL  V  L ++ K E+   D I LLKAL + GNWE+AL +F     
Sbjct: 120 TIKGKMMFNSIVESPLDCVNELCDSAKFELLEVDLISLLKALDLSGNWERALLVFEWILL 179

Query: 545 XXXXXXXRLDAPAIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLLHSYSRAG 724
                  +LD   IE+M+R+LG+ SQH++A+KLFD IP+EE+ LD+RAYTT++H+YSR G
Sbjct: 180 NLNAESLKLDKQIIELMVRILGRQSQHTIASKLFDVIPIEEYSLDVRAYTTVIHAYSRTG 239

Query: 725 KYDKAIALFNQIKSKGILPTLVTYNVILDVYGRKG 829
           KY++AI +F ++   G+ PTLVTYNV+LDVYG+KG
Sbjct: 240 KYERAIDMFEKLMEMGLSPTLVTYNVMLDVYGKKG 274


>gb|EMJ16134.1| hypothetical protein PRUPE_ppa001374mg [Prunus persica]
          Length = 842

 Score =  178 bits (451), Expect = 2e-42
 Identities = 104/279 (37%), Positives = 155/279 (55%), Gaps = 16/279 (5%)
 Frame = +2

Query: 41  MEGAPFPIRPALPNQS-----PKIVIQXXXXXXXXXXXXXXXXXXXXXXXQHLAKEARTT 205
           MEG  FP RPA P  +     P   ++                       QHL   +   
Sbjct: 1   MEGTFFPSRPAYPLPTNRPIQPSPPVKFNSTTLPPPPQTPSPPFPIDSLLQHLLSLSSPP 60

Query: 206 FRPP-------PTSKNPSFPSLRLASTSSPRE--KSSPAPHARLAGVKDGARVLR--DPR 352
             PP       P   N +FPSL+++  S+P++  +   A    +   +D    ++  D  
Sbjct: 61  NTPPKLKPLNPPQQTNGNFPSLQISVDSTPKQHHQLKKAASILVPNFEDDKVEVKPEDGL 120

Query: 353 LGFLSAAGQSLLRSIIQCPLVDVISLLEARKDEIFGTDWIGLLKALQVLGNWEKALTLFX 532
           L FL+  G+ +  SI++ PL  +    ++ K E+F  D I LLKAL + GNWE+AL LF 
Sbjct: 121 LDFLTIKGKLMFSSIVEQPLHSLNDFFDSAKFELFEVDLISLLKALDLSGNWERALLLFE 180

Query: 533 XXXXXXXXXXXRLDAPAIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLLHSY 712
                      +L+ P IE+M+R+LG+ SQH++A+KLFD IP+E++ LD+RAYTT++H++
Sbjct: 181 WILSNLSSENLKLNNPMIELMVRILGRESQHTIASKLFDVIPIEKYSLDVRAYTTIIHAH 240

Query: 713 SRAGKYDKAIALFNQIKSKGILPTLVTYNVILDVYGRKG 829
           SR GKY++AI LFN++   G+ PTLVTYNV+LDVYG+ G
Sbjct: 241 SRTGKYERAIDLFNKMVELGLSPTLVTYNVMLDVYGKMG 279


>gb|EOY31850.1| Tetratricopeptide repeat (TPR)-like superfamily protein [Theobroma
           cacao]
          Length = 845

 Score =  171 bits (433), Expect = 3e-40
 Identities = 95/228 (41%), Positives = 137/228 (60%), Gaps = 11/228 (4%)
 Frame = +2

Query: 179 HLAKEARTTFRP----PPTSKNPSFPSLRLASTSSPR-------EKSSPAPHARLAGVKD 325
           HL+    T  +P    PP + N  +PSL ++S S+ +       +K + A   +    K+
Sbjct: 56  HLSSPPNTIHKPKTINPPKTNNSHYPSLHISSDSTQKLQQQVHPKKPTSASLLQFDNSKE 115

Query: 326 GARVLRDPRLGFLSAAGQSLLRSIIQCPLVDVISLLEARKDEIFGTDWIGLLKALQVLGN 505
            ++  RD  L FLS  G  +L SI + PL  +     + K E+   D   LLKAL + G+
Sbjct: 116 ESQS-RDGSLEFLSRKGMLMLNSIKEQPLNSLNDFFNSVKFELLQFDMFSLLKALDLSGD 174

Query: 506 WEKALTLFXXXXXXXXXXXXRLDAPAIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIR 685
           WE+AL LF            +LD   +E+M+RVLG+ SQH +A KLFD IP+EE  LD+R
Sbjct: 175 WERALLLFQWVVSDIGSDNFKLDNQVVELMVRVLGRESQHGIALKLFDLIPIEECSLDVR 234

Query: 686 AYTTLLHSYSRAGKYDKAIALFNQIKSKGILPTLVTYNVILDVYGRKG 829
           A+TT+LH+YSR GKY +AI++F ++K+ G+ PTLVTYNV+LDVYG+ G
Sbjct: 235 AHTTILHAYSRTGKYKRAISMFEKMKATGLSPTLVTYNVMLDVYGKMG 282


>ref|XP_002533731.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223526356|gb|EEF28650.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 835

 Score =  168 bits (426), Expect = 2e-39
 Identities = 92/212 (43%), Positives = 133/212 (62%), Gaps = 7/212 (3%)
 Frame = +2

Query: 215 PPTSKNPSFPSLRLASTSSPREKSSPAPHARLAGV-------KDGARVLRDPRLGFLSAA 373
           PP+  N   PSL+++   + +++  PAPH +           ++   V     L +LS  
Sbjct: 63  PPS--NTRLPSLQISGDLT-KKQLQPAPHRKPNSFLEFEVDKEEDKDVSDSGFLEYLSRK 119

Query: 374 GQSLLRSIIQCPLVDVISLLEARKDEIFGTDWIGLLKALQVLGNWEKALTLFXXXXXXXX 553
           G+ +L SII+ PL  + S  ++ K E+   D I LLKAL   GNWEKAL LF        
Sbjct: 120 GKLILGSIIEQPLHSLASFFDSSKYELLQVDLISLLKALDYSGNWEKALLLFEWSVLNLG 179

Query: 554 XXXXRLDAPAIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLLHSYSRAGKYD 733
               ++D  AIE+M+R+LG+ SQH+VA+KLFD IPL+++ LD+RAYTT+LH+YSR GKY 
Sbjct: 180 IANEKIDRHAIELMVRILGRESQHTVASKLFDVIPLDDYVLDVRAYTTILHAYSRTGKYH 239

Query: 734 KAIALFNQIKSKGILPTLVTYNVILDVYGRKG 829
           +AI +F ++   G+ P+LVTYNV+LDVYG+ G
Sbjct: 240 RAIEIFERMNESGLSPSLVTYNVMLDVYGKMG 271


>ref|XP_006453335.1| hypothetical protein CICLE_v10007460mg [Citrus clementina]
           gi|567922660|ref|XP_006453336.1| hypothetical protein
           CICLE_v10007460mg [Citrus clementina]
           gi|568840495|ref|XP_006474202.1| PREDICTED:
           pentatricopeptide repeat-containing protein At2g18940,
           chloroplastic-like [Citrus sinensis]
           gi|557556561|gb|ESR66575.1| hypothetical protein
           CICLE_v10007460mg [Citrus clementina]
           gi|557556562|gb|ESR66576.1| hypothetical protein
           CICLE_v10007460mg [Citrus clementina]
          Length = 824

 Score =  166 bits (420), Expect = 9e-39
 Identities = 86/203 (42%), Positives = 127/203 (62%)
 Frame = +2

Query: 221 TSKNPSFPSLRLASTSSPREKSSPAPHARLAGVKDGARVLRDPRLGFLSAAGQSLLRSII 400
           +S + S P    A++++ +  +S  P +   G  D   V  D    FLS  G+ +  SI+
Sbjct: 59  SSSSSSSPLHIAAASTAAKRANSEKPTSVFDGKDDKGSVSNDGSFEFLSKRGELIFNSIV 118

Query: 401 QCPLVDVISLLEARKDEIFGTDWIGLLKALQVLGNWEKALTLFXXXXXXXXXXXXRLDAP 580
             PL  +    +  + E+ G D + +LKAL V G  E+AL LF            +LD  
Sbjct: 119 GYPLNSLNEFFDNSQHELLGIDLVTVLKALDVSGYRERALLLFEWLAVNSSFENGKLDKE 178

Query: 581 AIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLLHSYSRAGKYDKAIALFNQI 760
            I++M+R+LGK S+HS+A+KL D IPLE++ LD+RAYT++LH+YS+AGKY+KAI+LF ++
Sbjct: 179 VIQLMVRILGKESRHSIASKLLDLIPLEKYSLDVRAYTSILHAYSKAGKYEKAISLFEKV 238

Query: 761 KSKGILPTLVTYNVILDVYGRKG 829
           K  G+ PTLVTYNV+LDVYG+ G
Sbjct: 239 KEMGLSPTLVTYNVMLDVYGKMG 261



 Score = 58.2 bits (139), Expect = 4e-06
 Identities = 27/65 (41%), Positives = 40/65 (61%)
 Frame = +2

Query: 635 AKLFDCIPLEEFRLDIRAYTTLLHSYSRAGKYDKAIALFNQIKSKGILPTLVTYNVILDV 814
           A L D +  +    +   YTTL+ +Y RAGK +KA+ LFN++K  G  P + TYN +L +
Sbjct: 373 AALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLFNKMKESGCAPNVCTYNAVLGM 432

Query: 815 YGRKG 829
            G+KG
Sbjct: 433 LGKKG 437


>gb|EXC05166.1| hypothetical protein L484_003973 [Morus notabilis]
          Length = 807

 Score =  166 bits (419), Expect = 1e-38
 Identities = 90/211 (42%), Positives = 129/211 (61%), Gaps = 1/211 (0%)
 Frame = +2

Query: 200 TTFRPPPTSKNPSFPSLRLASTSSPREK-SSPAPHARLAGVKDGARVLRDPRLGFLSAAG 376
           T   PPP+S  P    L   S++ P+   SS     +   +        D  L FL+  G
Sbjct: 34  TPLPPPPSSSFPIDSLLHHLSSNLPKPHYSSLQISLKPTSIFVPHFQSDDGLLEFLTTKG 93

Query: 377 QSLLRSIIQCPLVDVISLLEARKDEIFGTDWIGLLKALQVLGNWEKALTLFXXXXXXXXX 556
           + +  SII   L D+    ++ ++++   D I LLKAL + GNWEK+L LF         
Sbjct: 94  KMIFNSIIDLSLHDLNGFFDSVRNDLVEIDLISLLKALDLSGNWEKSLLLFEWVLVNLCP 153

Query: 557 XXXRLDAPAIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLLHSYSRAGKYDK 736
              +L++  IE+M+R+LG+ SQH++A KLFD IP+EEF LD+RAYTT++H+YSR GKY +
Sbjct: 154 DYVKLNSQVIELMVRILGRESQHTIACKLFDEIPVEEFSLDVRAYTTIIHAYSRTGKYGR 213

Query: 737 AIALFNQIKSKGILPTLVTYNVILDVYGRKG 829
           AIA+F ++K  G+ PTLVTYNV+LDVYG+ G
Sbjct: 214 AIAIFERMKESGLSPTLVTYNVMLDVYGKMG 244



 Score = 58.5 bits (140), Expect = 3e-06
 Identities = 27/85 (31%), Positives = 49/85 (57%)
 Frame = +2

Query: 572 DAPAIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLLHSYSRAGKYDKAIALF 751
           D+     ++    ++  +   A + D +  +  + +   YTT++++Y +AGK DKA+ LF
Sbjct: 335 DSVTYNELVAAYVRAGFYEEGAAVIDTMAQKGVKPNAVTYTTVINAYGKAGKEDKALRLF 394

Query: 752 NQIKSKGILPTLVTYNVILDVYGRK 826
           NQ+K  G +P + TYN IL + G+K
Sbjct: 395 NQMKETGCVPNVCTYNAILGMLGKK 419


>ref|XP_002329666.1| predicted protein [Populus trichocarpa]
           gi|566176851|ref|XP_006381785.1| pentatricopeptide
           repeat-containing family protein [Populus trichocarpa]
           gi|550336541|gb|ERP59582.1| pentatricopeptide
           repeat-containing family protein [Populus trichocarpa]
          Length = 821

 Score =  164 bits (415), Expect = 4e-38
 Identities = 91/207 (43%), Positives = 128/207 (61%), Gaps = 2/207 (0%)
 Frame = +2

Query: 215 PPTSK--NPSFPSLRLASTSSPREKSSPAPHARLAGVKDGARVLRDPRLGFLSAAGQSLL 388
           PP  K     FPSL++++ SS               V+    +  +  L FLS  G+ LL
Sbjct: 60  PPNHKLNKTQFPSLQISNDSSISVLEFE--------VEKEEGLSENESLEFLSKRGKLLL 111

Query: 389 RSIIQCPLVDVISLLEARKDEIFGTDWIGLLKALQVLGNWEKALTLFXXXXXXXXXXXXR 568
            SI + PL  +    E+ K E+F  D IG+LKAL + G+ E+A+ LF             
Sbjct: 112 NSIKEQPLGGLNDFFESCKFELFQVDLIGVLKALDLSGDCERAILLFEWLVLNLGTGNVN 171

Query: 569 LDAPAIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLLHSYSRAGKYDKAIAL 748
           LD  A+E+M R+LG+ SQHS+A+KLFD IPL+++ LD+RAYTT+LHSYSR GKY++A+A+
Sbjct: 172 LDNQAVELMARILGRESQHSIASKLFDVIPLDDYSLDVRAYTTILHSYSRCGKYERAVAI 231

Query: 749 FNQIKSKGILPTLVTYNVILDVYGRKG 829
           F ++   G+ PTLVTYNV+LDVYG+ G
Sbjct: 232 FEKMNESGLSPTLVTYNVMLDVYGKMG 258


>ref|XP_003546411.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940,
           chloroplastic-like [Glycine max]
          Length = 829

 Score =  164 bits (414), Expect = 5e-38
 Identities = 103/269 (38%), Positives = 143/269 (53%), Gaps = 6/269 (2%)
 Frame = +2

Query: 41  MEGAPFPIRPALPNQSPKIVIQXXXXXXXXXXXXXXXXXXXXXXXQHLAKEARTTFRPPP 220
           MEG  FP RP LP  S K   Q                         L +  +     P 
Sbjct: 1   MEGTLFPNRPVLPAPSHKPTQQPLKFKPTFLPPQSPPPPPPSFQLDSLLQHLQHLSSVPI 60

Query: 221 TSKNPSFPSLRLASTSSPREKS-SPAPHARLAGVKDGARV----LRDPRLGFLSAAGQSL 385
           T+      +L L   S    K  + + H++   +  G+ +      D + GFLS  G+ L
Sbjct: 61  TTH-----TLTLVPPSHDNTKDFNNSVHSKHPTLGSGSIIDEDKFDDAKFGFLSDKGKLL 115

Query: 386 LRSIIQCPLVDVISLLEARKDEIFGTDWIGLLKALQVLGNWEKALTLFXXXXXXXXXXXX 565
             SI+  PL ++     + K E+   D+  LLKAL + GNWE+AL LF            
Sbjct: 116 FSSIVGSPLHELNDFFNSVKFELLEADFPSLLKALDLSGNWERALLLFEWGWLHFGSDQN 175

Query: 566 -RLDAPAIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLLHSYSRAGKYDKAI 742
            RLD   +E+M+R+LG+ SQHS+A+KLFD IP+E++ LD+RAYTT+LHSY+R GKY +AI
Sbjct: 176 LRLDNQVVELMVRILGRESQHSIASKLFDLIPVEKYSLDVRAYTTILHSYARTGKYKRAI 235

Query: 743 ALFNQIKSKGILPTLVTYNVILDVYGRKG 829
            LF ++K  G+ PTLVTYNV+LDVYG+ G
Sbjct: 236 DLFGKMKEIGLDPTLVTYNVMLDVYGKMG 264


>ref|XP_006344540.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940,
           chloroplastic-like [Solanum tuberosum]
          Length = 842

 Score =  163 bits (413), Expect = 6e-38
 Identities = 111/299 (37%), Positives = 150/299 (50%), Gaps = 36/299 (12%)
 Frame = +2

Query: 41  MEGAPFPIRPALPNQSPKIVIQXXXXXXXXXXXXXXXXXXXXXXXQHLAKEARTTFRP-- 214
           MEG+ FP RP LP QS K                           Q L     TT  P  
Sbjct: 1   MEGSLFPNRPILPIQSTK--------------------PTPLPPTQRLKLNPTTTSSPLP 40

Query: 215 ---------PPTSKNPSFPS-------LRLASTSSPRE-KSSPAPHARLAGVK------- 322
                    P +S + SFP        L ++S++ PR  KSS   +  L+ +        
Sbjct: 41  PLKQQQQQTPSSSTSTSFPLDSLLQHLLHVSSSNPPRTVKSSRISNTHLSSLPVSLENDD 100

Query: 323 ---DGARV-------LRDPRLGFLSAAGQSLLRSIIQCPLVDVISLLEARKDEIFGTDWI 472
                 RV         D  L FL    + L+ SI++ PL  +    ++ K E+   D +
Sbjct: 101 TLFGNTRVTVPKMESFDDGSLEFLPLNCKLLIDSILERPLSHLTEFFDSVKFELLEVDLM 160

Query: 473 GLLKALQVLGNWEKALTLFXXXXXXXXXXXXRLDAPAIEVMIRVLGKSSQHSVAAKLFDC 652
            LLK L V+G W++A+ LF            +LD+  IE M++VLG+ SQH V +KLFD 
Sbjct: 161 SLLKGLDVIGKWDRAILLFEWVVLNIHVENEKLDSQVIEFMVKVLGRESQHLVTSKLFDV 220

Query: 653 IPLEEFRLDIRAYTTLLHSYSRAGKYDKAIALFNQIKSKGILPTLVTYNVILDVYGRKG 829
           IP E++ LD+RA+TT+LH+YSR GKYDKAIALF  +K KG+  TLVTYNV+LDVYG+KG
Sbjct: 221 IPFEDYSLDVRAWTTVLHAYSRIGKYDKAIALFEYVKEKGLSATLVTYNVMLDVYGKKG 279


>gb|ESW10803.1| hypothetical protein PHAVU_009G239200g [Phaseolus vulgaris]
          Length = 831

 Score =  163 bits (412), Expect = 8e-38
 Identities = 106/272 (38%), Positives = 145/272 (53%), Gaps = 9/272 (3%)
 Frame = +2

Query: 41  MEGAPFPIRPALPNQSP--KIVIQXXXXXXXXXXXXXXXXXXXXXXXQHLAKEARTTFRP 214
           MEG  FP RP LP  +P  K   Q                         L +  +     
Sbjct: 1   MEGTLFPNRPVLPAPAPAPKSTQQPSKFKPTFLPPQSPPPPPPSFQLDSLLQHLQHLSSV 60

Query: 215 PPTSKNPSFPSLRLASTSSPRE----KSSPAPHARLAG--VKDGARVLRDPRLGFLSAAG 376
           P T+     P+L L   S         S  + H  LA   V D  RV  D + GFLS  G
Sbjct: 61  PITT-----PTLTLVPLSEDNSIHFNNSLHSKHPSLASGPVVDQDRV-HDAKFGFLSDKG 114

Query: 377 QSLLRSIIQCPLVDVISLLEARKDEIFGTDWIGLLKALQVLGNWEKALTLFXXXXXXXXX 556
           + LL SI+  PL ++     + + E+   D++ LLKAL + GNWE+AL LF         
Sbjct: 115 KLLLNSIVGSPLHELNGFFNSVEFELLEVDFLSLLKALDLSGNWERALLLFEWGWLHFGS 174

Query: 557 XXX-RLDAPAIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLLHSYSRAGKYD 733
               RLD   +E+MIR+LG+ SQH++A+KLFD IP+E++ LD+RAYTT+LH+Y+R GK+ 
Sbjct: 175 EQNLRLDNQVVELMIRILGRESQHTIASKLFDLIPVEQYSLDVRAYTTVLHAYARTGKHK 234

Query: 734 KAIALFNQIKSKGILPTLVTYNVILDVYGRKG 829
           +AI LF ++   G+ PTLVTYNV+LDVYG+ G
Sbjct: 235 RAIELFEKMNEFGLGPTLVTYNVMLDVYGKMG 266


>ref|XP_004242906.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Solanum lycopersicum]
          Length = 842

 Score =  162 bits (409), Expect = 2e-37
 Identities = 111/299 (37%), Positives = 150/299 (50%), Gaps = 36/299 (12%)
 Frame = +2

Query: 41  MEGAPFPIRPALPNQSPKIVIQXXXXXXXXXXXXXXXXXXXXXXXQHLAKEARTTFRP-- 214
           MEG+ FP RP LP QS K                           Q L     TT  P  
Sbjct: 1   MEGSLFPNRPILPIQSTK--------------------PTPLPPTQRLKLNPTTTTSPLP 40

Query: 215 ---------PPTSKNPSFPS-------LRLASTSSPRE-KSSPAPHARLAGVK------- 322
                    P +S + SFP        L ++S++ PR  KSS   +  L+ +        
Sbjct: 41  PLKQQQQQTPSSSTSTSFPLDSLLQHLLHVSSSNPPRTVKSSRISNTHLSTLPVSLENDD 100

Query: 323 ---DGARV-------LRDPRLGFLSAAGQSLLRSIIQCPLVDVISLLEARKDEIFGTDWI 472
                 RV         D  L FL    + ++ SI++ PL  +    ++ K E+   D +
Sbjct: 101 TLFGNTRVTVPKMESFDDGSLEFLPLNCKLMIDSILERPLSHMTEFFDSVKLELLEVDLM 160

Query: 473 GLLKALQVLGNWEKALTLFXXXXXXXXXXXXRLDAPAIEVMIRVLGKSSQHSVAAKLFDC 652
            LLK L VLG W++A+ LF            +LD+  IE M++VLG+ SQH V +KLFD 
Sbjct: 161 SLLKGLDVLGKWDRAILLFEWAVLNIHVENEKLDSQVIEFMVKVLGRESQHLVTSKLFDV 220

Query: 653 IPLEEFRLDIRAYTTLLHSYSRAGKYDKAIALFNQIKSKGILPTLVTYNVILDVYGRKG 829
           IP E++ LD+RA+TT+LH+YSR GKYDKAIALF  +K KG+  TLVTYNV+LDVYG+KG
Sbjct: 221 IPFEDYSLDVRAWTTVLHAYSRIGKYDKAIALFEYVKEKGLSVTLVTYNVMLDVYGKKG 279


>ref|XP_002884184.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297330024|gb|EFH60443.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 829

 Score =  160 bits (405), Expect = 5e-37
 Identities = 89/207 (42%), Positives = 129/207 (62%), Gaps = 2/207 (0%)
 Frame = +2

Query: 215 PPTSKNPSFPSLRLASTSSP--REKSSPAPHARLAGVKDGARVLRDPRLGFLSAAGQSLL 388
           PP      FPSL ++++S+   R +S+    + + GV+      RD  L  L      L+
Sbjct: 62  PPRHAAARFPSLEVSTSSAHKWRHESTKPMSSSVLGVEIENE--RDGSLKLLCKKEVVLV 119

Query: 389 RSIIQCPLVDVISLLEARKDEIFGTDWIGLLKALQVLGNWEKALTLFXXXXXXXXXXXXR 568
            SI++ PL  + S  ++ K E+  TD + L+K L   G+WE+A+ LF            +
Sbjct: 120 NSIVEQPLPRLSSFFDSVKSELLTTDLVSLVKGLDDSGHWERAVFLFEWLVLSSNSGALK 179

Query: 569 LDAPAIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLLHSYSRAGKYDKAIAL 748
           LD   IE+++R+LG+ SQ+SVAAKL D IPL+++ LD+RAYTT+LH+YSR GKY+KAI L
Sbjct: 180 LDHHVIEILVRILGRESQYSVAAKLLDKIPLQDYMLDVRAYTTILHAYSRTGKYEKAINL 239

Query: 749 FNQIKSKGILPTLVTYNVILDVYGRKG 829
           F ++K  G  PTLVTYNVILDV+G+ G
Sbjct: 240 FERMKEMGPSPTLVTYNVILDVFGKMG 266


>ref|NP_179484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75099137|sp|O64624.1|PP163_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g18940, chloroplastic; Flags: Precursor
           gi|3004555|gb|AAC09028.1| putative salt-inducible
           protein [Arabidopsis thaliana]
           gi|15983785|gb|AAL10489.1| At2g18940/F19F24.14
           [Arabidopsis thaliana] gi|38564280|gb|AAR23719.1|
           At2g18940/F19F24.14 [Arabidopsis thaliana]
           gi|330251736|gb|AEC06830.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  158 bits (400), Expect = 2e-36
 Identities = 89/209 (42%), Positives = 125/209 (59%), Gaps = 3/209 (1%)
 Frame = +2

Query: 212 PPPTSKNPS---FPSLRLASTSSPREKSSPAPHARLAGVKDGARVLRDPRLGFLSAAGQS 382
           PPP   N +   FPSL +++ SS    S P     +   ++G+       L  L      
Sbjct: 61  PPPRHSNSAAARFPSLEVSTDSS---SSKPILGIEIENERNGS-------LKLLCKKEVV 110

Query: 383 LLRSIIQCPLVDVISLLEARKDEIFGTDWIGLLKALQVLGNWEKALTLFXXXXXXXXXXX 562
           L+ SI++ PL  +    ++ K E+  TD + L+K L   G+WE+A+ LF           
Sbjct: 111 LVNSIVEQPLTGLSRFFDSVKSELLRTDLVSLVKGLDDSGHWERAVFLFEWLVLSSNSGA 170

Query: 563 XRLDAPAIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLLHSYSRAGKYDKAI 742
            +LD   IE+ +R+LG+ SQ+SVAAKL D IPL+E+ LD+RAYTT+LH+YSR GKY+KAI
Sbjct: 171 LKLDHQVIEIFVRILGRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAI 230

Query: 743 ALFNQIKSKGILPTLVTYNVILDVYGRKG 829
            LF ++K  G  PTLVTYNVILDV+G+ G
Sbjct: 231 DLFERMKEMGPSPTLVTYNVILDVFGKMG 259


>ref|XP_003533718.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940,
           chloroplastic-like [Glycine max]
          Length = 830

 Score =  158 bits (399), Expect = 3e-36
 Identities = 79/163 (48%), Positives = 113/163 (69%), Gaps = 1/163 (0%)
 Frame = +2

Query: 344 DPRLGFLSAAGQSLLRSIIQCPLVDVISLLEARKDEIFGTDWIGLLKALQVLGNWEKALT 523
           D +  FLS  G+ LL S++  PL ++     + K E+   D+  LLKAL + GNWE+AL 
Sbjct: 103 DAKFRFLSDKGKLLLNSVVGSPLHELNDFFNSVKFELLEADFPSLLKALDLSGNWERALL 162

Query: 524 LFXXXXXXXXXXXX-RLDAPAIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTL 700
           LF             RLD   +E+M+R+LG+ SQHS+A+KLFD IP+E++ LD+RAYTT+
Sbjct: 163 LFEWGWLHFGSDQNLRLDNQVVELMVRILGRESQHSIASKLFDLIPVEKYSLDVRAYTTI 222

Query: 701 LHSYSRAGKYDKAIALFNQIKSKGILPTLVTYNVILDVYGRKG 829
           LH+Y+R+GKY +AI LF++++  G+ PTLVTYNV+LDVYG+ G
Sbjct: 223 LHAYARSGKYKRAIDLFDKMEGIGLDPTLVTYNVMLDVYGKMG 265


>ref|XP_002267263.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940
           [Vitis vinifera] gi|297735424|emb|CBI17864.3| unnamed
           protein product [Vitis vinifera]
          Length = 821

 Score =  156 bits (394), Expect = 1e-35
 Identities = 85/218 (38%), Positives = 127/218 (58%)
 Frame = +2

Query: 176 QHLAKEARTTFRPPPTSKNPSFPSLRLASTSSPREKSSPAPHARLAGVKDGARVLRDPRL 355
           QHL   +  T +P P   NP   +L+  S  S  +       A+            D  +
Sbjct: 53  QHLLHFSSPTHKPKPI--NPPKTNLKKFSAVSVSQLEGSVEEAQSP----------DGSV 100

Query: 356 GFLSAAGQSLLRSIIQCPLVDVISLLEARKDEIFGTDWIGLLKALQVLGNWEKALTLFXX 535
            FLS  G+ LL SI++ PL  +    ++ K E+   D + LLK L + GNW++A+ LF  
Sbjct: 101 EFLSRKGKFLLNSIVEHPLPGLNDFFDSVKFELLDVDLVSLLKGLDLSGNWKRAVLLFKW 160

Query: 536 XXXXXXXXXXRLDAPAIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLLHSYS 715
                     ++D   +E+M+R+LG+ SQHSVA +L D I +EE+ LD+RA+TT+LH+YS
Sbjct: 161 AILNLYSRNEKIDNQLVELMVRILGRESQHSVALRLLDEISVEEYSLDVRAWTTILHAYS 220

Query: 716 RAGKYDKAIALFNQIKSKGILPTLVTYNVILDVYGRKG 829
           R GKY++AI +F +++  G+ PTLVTYNV+LDVYG+ G
Sbjct: 221 RIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMG 258


>emb|CAN75494.1| hypothetical protein VITISV_030525 [Vitis vinifera]
          Length = 821

 Score =  156 bits (394), Expect = 1e-35
 Identities = 85/218 (38%), Positives = 127/218 (58%)
 Frame = +2

Query: 176 QHLAKEARTTFRPPPTSKNPSFPSLRLASTSSPREKSSPAPHARLAGVKDGARVLRDPRL 355
           QHL   +  T +P P   NP   +L+  S  S  +       A+            D  +
Sbjct: 53  QHLLHFSSPTHKPKPI--NPPKTNLKKFSAVSVSQLEGSVEEAQSP----------DGSV 100

Query: 356 GFLSAAGQSLLRSIIQCPLVDVISLLEARKDEIFGTDWIGLLKALQVLGNWEKALTLFXX 535
            FLS  G+ LL SI++ PL  +    ++ K E+   D + LLK L + GNW++A+ LF  
Sbjct: 101 EFLSRKGKFLLNSIVEHPLPGLNDFFDSVKFELLDVDLVSLLKGLDLSGNWKRAVLLFKW 160

Query: 536 XXXXXXXXXXRLDAPAIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLLHSYS 715
                     ++D   +E+M+R+LG+ SQHSVA +L D I +EE+ LD+RA+TT+LH+YS
Sbjct: 161 AILNLYSRNEKIDNQLVELMVRILGRESQHSVALRLLDEISVEEYSLDVRAWTTILHAYS 220

Query: 716 RAGKYDKAIALFNQIKSKGILPTLVTYNVILDVYGRKG 829
           R GKY++AI +F +++  G+ PTLVTYNV+LDVYG+ G
Sbjct: 221 RIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMG 258


>ref|XP_006409097.1| hypothetical protein EUTSA_v10022551mg [Eutrema salsugineum]
           gi|557110259|gb|ESQ50550.1| hypothetical protein
           EUTSA_v10022551mg [Eutrema salsugineum]
          Length = 838

 Score =  155 bits (393), Expect = 1e-35
 Identities = 101/280 (36%), Positives = 143/280 (51%), Gaps = 17/280 (6%)
 Frame = +2

Query: 41  MEGAPFPIRPALPNQSPK----------IVIQXXXXXXXXXXXXXXXXXXXXXXXQHLAK 190
           M+GA FP +P  P QS K          +                           HL+ 
Sbjct: 1   MDGALFPHKPPYPIQSKKPPPSQSSNHSVKFSSATLHLPPPSPPSFPLDSLLHHLVHLSS 60

Query: 191 EARTTFRPPPTSKNPSFPSLRLASTSSPREKSSPAPHAR-----LAGVKDGARVLR--DP 349
             R        S    FPSL ++ST S  +       AR     + G++ G+   +  D 
Sbjct: 61  TPRNA-----NSAAARFPSLEVSSTESAHKWGHEVKSARPDSIPVLGIEIGSDEGKFGDG 115

Query: 350 RLGFLSAAGQSLLRSIIQCPLVDVISLLEARKDEIFGTDWIGLLKALQVLGNWEKALTLF 529
            L  L      LL SI++ PL  +    ++ K E+  TD   L+K+L   GNWE+A+ LF
Sbjct: 116 SLKLLCKKEVVLLNSIVEQPLHGLSEFFDSAKPELLRTDLFSLVKSLDDSGNWERAVLLF 175

Query: 530 XXXXXXXXXXXXRLDAPAIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLLHS 709
                       +LD   IE+++R+LG+ SQ+SVAAKL D IPL++  LD+RAYTT+L++
Sbjct: 176 EWLVLASNSGALKLDHQVIEIVVRILGRESQYSVAAKLLDKIPLQDHLLDVRAYTTILYT 235

Query: 710 YSRAGKYDKAIALFNQIKSKGILPTLVTYNVILDVYGRKG 829
           YSR GKY++AI+LF ++K  G  PTLVTYNVILDV+G+ G
Sbjct: 236 YSRTGKYERAISLFERMKEMGPSPTLVTYNVILDVFGKMG 275


>ref|XP_006296987.1| hypothetical protein CARUB_v10012981mg [Capsella rubella]
           gi|482565696|gb|EOA29885.1| hypothetical protein
           CARUB_v10012981mg [Capsella rubella]
          Length = 832

 Score =  154 bits (389), Expect = 4e-35
 Identities = 89/210 (42%), Positives = 124/210 (59%), Gaps = 5/210 (2%)
 Frame = +2

Query: 215 PPTSKNPSFPSLRLASTSSP-----REKSSPAPHARLAGVKDGARVLRDPRLGFLSAAGQ 379
           PP      FPSL +++ SS      R +SS    + + G + G    R   L  L     
Sbjct: 62  PPRHAAARFPSLEVSTDSSSSTHKWRHESSKPMSSSVLGGEIGNE--RGGSLKLLCKKEV 119

Query: 380 SLLRSIIQCPLVDVISLLEARKDEIFGTDWIGLLKALQVLGNWEKALTLFXXXXXXXXXX 559
            L+ SI++ PL  +    ++ K E+  TD + L+K L   G+WE+A  LF          
Sbjct: 120 VLVNSIVEQPLPGLNRFFDSVKSELLRTDLVSLVKGLDDSGHWERAAFLFEWLVSPSNSG 179

Query: 560 XXRLDAPAIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLLHSYSRAGKYDKA 739
             +LD   IE+++R+L + SQ+SVAAKL D IPL+E+ LD+RAYTT+LH+YSR GKY+KA
Sbjct: 180 TLKLDHQVIEILVRILSRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHTYSRTGKYEKA 239

Query: 740 IALFNQIKSKGILPTLVTYNVILDVYGRKG 829
           I LF ++K  G  PTLVTYNVILDV+G+ G
Sbjct: 240 INLFERMKEFGPSPTLVTYNVILDVFGKMG 269


>ref|XP_004487947.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Cicer arietinum]
          Length = 840

 Score =  153 bits (387), Expect = 6e-35
 Identities = 74/162 (45%), Positives = 108/162 (66%)
 Frame = +2

Query: 344 DPRLGFLSAAGQSLLRSIIQCPLVDVISLLEARKDEIFGTDWIGLLKALQVLGNWEKALT 523
           D + GFLS   + +L SI+   L D+I    + K E+  +D   LLK L + GNWE+A  
Sbjct: 116 DAKFGFLSDKSKCMLNSIVGFSLNDLIEFFNSVKYELLESDITSLLKGLDLSGNWERAFL 175

Query: 524 LFXXXXXXXXXXXXRLDAPAIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLL 703
           LF            R+D  ++E+M+++LG+ SQ+S+A+KLFD IP+EE+ LD+RA TT+L
Sbjct: 176 LFEWVWLNFGSENMRVDDQSVELMVKILGRESQYSIASKLFDIIPVEEYSLDVRACTTVL 235

Query: 704 HSYSRAGKYDKAIALFNQIKSKGILPTLVTYNVILDVYGRKG 829
           H+Y+R GKY +AI +F ++K  G+ P LVTYNV+LDVYG+ G
Sbjct: 236 HAYARTGKYKRAIYIFEKMKETGLNPNLVTYNVMLDVYGKMG 277


>ref|XP_003594946.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|124359380|gb|ABN05846.1| Tetratricopeptide-like
           helical [Medicago truncatula]
           gi|355483994|gb|AES65197.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 849

 Score =  153 bits (386), Expect = 8e-35
 Identities = 73/162 (45%), Positives = 108/162 (66%)
 Frame = +2

Query: 344 DPRLGFLSAAGQSLLRSIIQCPLVDVISLLEARKDEIFGTDWIGLLKALQVLGNWEKALT 523
           D + GFLS   + +L  I+   L D+I    + K E+  +D  GLLK L + GNWE+A  
Sbjct: 125 DVKFGFLSGKSKFMLNCIVGSSLNDLIEFFNSVKGELLESDITGLLKGLDLSGNWERAFL 184

Query: 524 LFXXXXXXXXXXXXRLDAPAIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLL 703
           LF            ++D  ++E M+++LG+ SQ+S+A+KLFD IP+EE+ LD++A TT+L
Sbjct: 185 LFEWVWLNFGSENMKVDDQSVEFMVKMLGRESQYSIASKLFDIIPVEEYSLDVKACTTVL 244

Query: 704 HSYSRAGKYDKAIALFNQIKSKGILPTLVTYNVILDVYGRKG 829
           H+Y+R GKY +AI +F ++K  G+ PTLVTYNV+LDVYG+ G
Sbjct: 245 HAYARTGKYKRAIEIFEKMKETGLDPTLVTYNVMLDVYGKMG 286