BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00021574
         (247 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EMJ03015.1| hypothetical protein PRUPE_ppa008812mg [Prunus pe...   152   3e-35
gb|EXC17267.1| DNA-directed RNA polymerase II subunit [Morus not...   151   8e-35
ref|XP_004304034.1| PREDICTED: DNA-directed RNA polymerase II su...   151   8e-35
ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerases II, ...   151   8e-35
ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerases II, ...   151   8e-35
gb|ESW29765.1| hypothetical protein PHAVU_002G097400g [Phaseolus...   151   1e-34
ref|XP_006422955.1| hypothetical protein CICLE_v10028849mg [Citr...   150   2e-34
gb|EOX98333.1| DNA-directed RNA polymerase family protein [Theob...   150   2e-34
ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II su...   150   2e-34
ref|XP_006298158.1| hypothetical protein CARUB_v10014208mg [Caps...   149   4e-34
ref|XP_004238992.1| PREDICTED: DNA-directed RNA polymerase II su...   149   4e-34
ref|NP_179145.1| DNA-directed RNA polymerase II subunit RPB3-A [...   149   4e-34
ref|XP_002883895.1| RBP36A [Arabidopsis lyrata subsp. lyrata] gi...   149   4e-34
emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]   149   5e-34
gb|EMS66673.1| DNA-directed RNA polymerase II subunit RPB3-A [Tr...   148   6e-34
ref|XP_003607895.1| DNA-directed RNA polymerase II subunit RPB3-...   148   6e-34
gb|AFK41039.1| unknown [Medicago truncatula]                          148   6e-34
ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II su...   148   6e-34
ref|XP_004505300.1| PREDICTED: DNA-directed RNA polymerase II su...   148   8e-34
gb|AAZ32911.1| DNA-directed RNA polymerase II third largest subu...   148   8e-34

>gb|EMJ03015.1| hypothetical protein PRUPE_ppa008812mg [Prunus persica]
          Length = 318

 Score =  152 bits (385), Expect = 3e-35
 Identities = 74/80 (92%), Positives = 77/80 (96%)
 Frame = +3

Query: 3   RDTDVSIANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRLGLIPLTSDDAMTMRF 182
           RDTD S+ANALRRVMIAEVPTVAIDLVEIE NSSVLNDEF+AHRLGLIPLTSD AM+MRF
Sbjct: 27  RDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAHRLGLIPLTSDRAMSMRF 86

Query: 183 SRDCDACDGDGQCEFCSVEF 242
           SRDCDACDGDGQCEFCSVEF
Sbjct: 87  SRDCDACDGDGQCEFCSVEF 106


>gb|EXC17267.1| DNA-directed RNA polymerase II subunit [Morus notabilis]
          Length = 588

 Score =  151 bits (382), Expect = 8e-35
 Identities = 73/80 (91%), Positives = 77/80 (96%)
 Frame = +3

Query: 3   RDTDVSIANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRLGLIPLTSDDAMTMRF 182
           RDTD S+ANALRRVMIAEVPT+AIDLVEIE NSSVLNDEF+AHRLGLIPLTSD AM+MRF
Sbjct: 27  RDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSDRAMSMRF 86

Query: 183 SRDCDACDGDGQCEFCSVEF 242
           SRDCDACDGDGQCEFCSVEF
Sbjct: 87  SRDCDACDGDGQCEFCSVEF 106


>ref|XP_004304034.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Fragaria vesca subsp. vesca]
          Length = 318

 Score =  151 bits (382), Expect = 8e-35
 Identities = 73/80 (91%), Positives = 77/80 (96%)
 Frame = +3

Query: 3   RDTDVSIANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRLGLIPLTSDDAMTMRF 182
           RDTD S+ANALRRVMIAEVPTVAIDLVEIE NSSVLNDEF+AHRLGLIPLTSD AM+MRF
Sbjct: 27  RDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAHRLGLIPLTSDRAMSMRF 86

Query: 183 SRDCDACDGDGQCEFCSVEF 242
           SRDCDACDGDGQCE+CSVEF
Sbjct: 87  SRDCDACDGDGQCEYCSVEF 106


>ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
           [Glycine max]
          Length = 320

 Score =  151 bits (382), Expect = 8e-35
 Identities = 74/80 (92%), Positives = 77/80 (96%)
 Frame = +3

Query: 3   RDTDVSIANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRLGLIPLTSDDAMTMRF 182
           RDTD SIANALRRVMIAEVPTVAIDLVEIE NSSVLNDEF+AHRLGLIPLTS+ AM+MRF
Sbjct: 28  RDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRF 87

Query: 183 SRDCDACDGDGQCEFCSVEF 242
           SRDCDACDGDGQCEFCSVEF
Sbjct: 88  SRDCDACDGDGQCEFCSVEF 107


>ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3
           [Glycine max]
          Length = 319

 Score =  151 bits (382), Expect = 8e-35
 Identities = 74/80 (92%), Positives = 77/80 (96%)
 Frame = +3

Query: 3   RDTDVSIANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRLGLIPLTSDDAMTMRF 182
           RDTD SIANALRRVMIAEVPTVAIDLVEIE NSSVLNDEF+AHRLGLIPLTS+ AM+MRF
Sbjct: 28  RDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRF 87

Query: 183 SRDCDACDGDGQCEFCSVEF 242
           SRDCDACDGDGQCEFCSVEF
Sbjct: 88  SRDCDACDGDGQCEFCSVEF 107


>gb|ESW29765.1| hypothetical protein PHAVU_002G097400g [Phaseolus vulgaris]
          Length = 318

 Score =  151 bits (381), Expect = 1e-34
 Identities = 73/80 (91%), Positives = 77/80 (96%)
 Frame = +3

Query: 3   RDTDVSIANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRLGLIPLTSDDAMTMRF 182
           RDTD SIANALRRVMIAEVPT+AIDLVEIE NSSVLNDEF+AHRLGLIPLTS+ AM+MRF
Sbjct: 27  RDTDASIANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRF 86

Query: 183 SRDCDACDGDGQCEFCSVEF 242
           SRDCDACDGDGQCEFCSVEF
Sbjct: 87  SRDCDACDGDGQCEFCSVEF 106


>ref|XP_006422955.1| hypothetical protein CICLE_v10028849mg [Citrus clementina]
           gi|568867393|ref|XP_006487022.1| PREDICTED: DNA-directed
           RNA polymerases II, IV and V subunit 3-like [Citrus
           sinensis] gi|557524889|gb|ESR36195.1| hypothetical
           protein CICLE_v10028849mg [Citrus clementina]
          Length = 319

 Score =  150 bits (378), Expect = 2e-34
 Identities = 72/80 (90%), Positives = 77/80 (96%)
 Frame = +3

Query: 3   RDTDVSIANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRLGLIPLTSDDAMTMRF 182
           RDTD S+ANALRRVMIAEVPT+AIDLVEIE NSSVLNDEF+AHRLGLIPLTS+ AM+MRF
Sbjct: 27  RDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRF 86

Query: 183 SRDCDACDGDGQCEFCSVEF 242
           SRDCDACDGDGQCEFCSVEF
Sbjct: 87  SRDCDACDGDGQCEFCSVEF 106


>gb|EOX98333.1| DNA-directed RNA polymerase family protein [Theobroma cacao]
          Length = 318

 Score =  150 bits (378), Expect = 2e-34
 Identities = 72/80 (90%), Positives = 77/80 (96%)
 Frame = +3

Query: 3   RDTDVSIANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRLGLIPLTSDDAMTMRF 182
           RDTD S+ANALRRVMIAEVPT+AIDLVEIE NSSVLNDEF+AHRLGLIPLTS+ AM+MRF
Sbjct: 27  RDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRF 86

Query: 183 SRDCDACDGDGQCEFCSVEF 242
           SRDCDACDGDGQCEFCSVEF
Sbjct: 87  SRDCDACDGDGQCEFCSVEF 106


>ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Cucumis sativus]
          Length = 320

 Score =  150 bits (378), Expect = 2e-34
 Identities = 72/80 (90%), Positives = 77/80 (96%)
 Frame = +3

Query: 3   RDTDVSIANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRLGLIPLTSDDAMTMRF 182
           RDTD S+ANALRRVMIAEVPT+AIDLVEIE NSSVLNDEF+AHRLGLIPLTS+ AM+MRF
Sbjct: 27  RDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRF 86

Query: 183 SRDCDACDGDGQCEFCSVEF 242
           SRDCDACDGDGQCEFCSVEF
Sbjct: 87  SRDCDACDGDGQCEFCSVEF 106


>ref|XP_006298158.1| hypothetical protein CARUB_v10014208mg [Capsella rubella]
           gi|482566867|gb|EOA31056.1| hypothetical protein
           CARUB_v10014208mg [Capsella rubella]
          Length = 319

 Score =  149 bits (376), Expect = 4e-34
 Identities = 72/80 (90%), Positives = 78/80 (97%)
 Frame = +3

Query: 3   RDTDVSIANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRLGLIPLTSDDAMTMRF 182
           R+TDVS+ANALRRVMI+EVPTVAIDLVEIE NSSVLNDEF+AHRLGLIPLTS+ AM+MRF
Sbjct: 27  RETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRF 86

Query: 183 SRDCDACDGDGQCEFCSVEF 242
           SRDCDACDGDGQCEFCSVEF
Sbjct: 87  SRDCDACDGDGQCEFCSVEF 106


>ref|XP_004238992.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Solanum lycopersicum]
          Length = 319

 Score =  149 bits (376), Expect = 4e-34
 Identities = 69/81 (85%), Positives = 78/81 (96%)
 Frame = +3

Query: 3   RDTDVSIANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRLGLIPLTSDDAMTMRF 182
           RDTD SIANALRR+MIAEVPT+AIDLVEIE NSSVLNDEF++HRLGL+PLTS+ AM+MRF
Sbjct: 27  RDTDASIANALRRIMIAEVPTIAIDLVEIEVNSSVLNDEFISHRLGLVPLTSERAMSMRF 86

Query: 183 SRDCDACDGDGQCEFCSVEFF 245
           SRDCDACDGDGQCE+CSVEF+
Sbjct: 87  SRDCDACDGDGQCEYCSVEFY 107


>ref|NP_179145.1| DNA-directed RNA polymerase II subunit RPB3-A [Arabidopsis
           thaliana] gi|11134646|sp|Q39211.1|NRPB3_ARATH RecName:
           Full=DNA-directed RNA polymerases II, IV and V subunit
           3; AltName: Full=DNA-directed RNA polymerase II 36 kDa
           polypeptide A; AltName: Full=DNA-directed RNA polymerase
           II subunit RPB3-A; Short=RNA polymerase II subunit 3-A;
           Short=RNA polymerase II subunit B3-A
           gi|514318|gb|AAB03741.1| RNA polymerase II third largest
           subunit [Arabidopsis thaliana] gi|4544370|gb|AAD22281.1|
           DNA-directed RNA polymerase II, third largest subunit
           [Arabidopsis thaliana] gi|17381018|gb|AAL36321.1|
           putative DNA-directed RNA polymerase II third largest
           subunit [Arabidopsis thaliana]
           gi|20465883|gb|AAM20046.1| putative DNA-directed RNA
           polymerase II [Arabidopsis thaliana]
           gi|330251306|gb|AEC06400.1| DNA-directed RNA polymerase
           II subunit RPB3-A [Arabidopsis thaliana]
          Length = 319

 Score =  149 bits (376), Expect = 4e-34
 Identities = 72/80 (90%), Positives = 78/80 (97%)
 Frame = +3

Query: 3   RDTDVSIANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRLGLIPLTSDDAMTMRF 182
           R+TDVS+ANALRRVMI+EVPTVAIDLVEIE NSSVLNDEF+AHRLGLIPLTS+ AM+MRF
Sbjct: 27  RETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRF 86

Query: 183 SRDCDACDGDGQCEFCSVEF 242
           SRDCDACDGDGQCEFCSVEF
Sbjct: 87  SRDCDACDGDGQCEFCSVEF 106


>ref|XP_002883895.1| RBP36A [Arabidopsis lyrata subsp. lyrata]
           gi|297329735|gb|EFH60154.1| RBP36A [Arabidopsis lyrata
           subsp. lyrata]
          Length = 319

 Score =  149 bits (376), Expect = 4e-34
 Identities = 72/80 (90%), Positives = 78/80 (97%)
 Frame = +3

Query: 3   RDTDVSIANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRLGLIPLTSDDAMTMRF 182
           R+TDVS+ANALRRVMI+EVPTVAIDLVEIE NSSVLNDEF+AHRLGLIPLTS+ AM+MRF
Sbjct: 27  RETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRF 86

Query: 183 SRDCDACDGDGQCEFCSVEF 242
           SRDCDACDGDGQCEFCSVEF
Sbjct: 87  SRDCDACDGDGQCEFCSVEF 106


>emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
          Length = 318

 Score =  149 bits (375), Expect = 5e-34
 Identities = 72/80 (90%), Positives = 77/80 (96%)
 Frame = +3

Query: 3   RDTDVSIANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRLGLIPLTSDDAMTMRF 182
           R+TD S+ANALRRVMIAEVPTVAIDLVEIE NSSVLNDEF+AHRLGLIPLTS+ AM+MRF
Sbjct: 27  RETDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRF 86

Query: 183 SRDCDACDGDGQCEFCSVEF 242
           SRDCDACDGDGQCEFCSVEF
Sbjct: 87  SRDCDACDGDGQCEFCSVEF 106


>gb|EMS66673.1| DNA-directed RNA polymerase II subunit RPB3-A [Triticum urartu]
          Length = 305

 Score =  148 bits (374), Expect = 6e-34
 Identities = 72/80 (90%), Positives = 76/80 (95%)
 Frame = +3

Query: 3   RDTDVSIANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRLGLIPLTSDDAMTMRF 182
           +DTD S+ANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRLGLIPLTS  AM+MRF
Sbjct: 31  KDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRLGLIPLTSSAAMSMRF 90

Query: 183 SRDCDACDGDGQCEFCSVEF 242
           SRDCDACDGDG CE+CSVEF
Sbjct: 91  SRDCDACDGDGSCEYCSVEF 110


>ref|XP_003607895.1| DNA-directed RNA polymerase II subunit RPB3-A [Medicago truncatula]
           gi|85719360|gb|ABC75365.1| RNA polymerase, dimerisation
           [Medicago truncatula] gi|355508950|gb|AES90092.1|
           DNA-directed RNA polymerase II subunit RPB3-A [Medicago
           truncatula]
          Length = 318

 Score =  148 bits (374), Expect = 6e-34
 Identities = 71/80 (88%), Positives = 76/80 (95%)
 Frame = +3

Query: 3   RDTDVSIANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRLGLIPLTSDDAMTMRF 182
           RDTD S+ANALRRVMI+EVPTVAIDLVEIE NSSVLNDEF+AHRLGLIPLTS+ AM MRF
Sbjct: 27  RDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRF 86

Query: 183 SRDCDACDGDGQCEFCSVEF 242
           SRDCDACDGDGQCE+CSVEF
Sbjct: 87  SRDCDACDGDGQCEYCSVEF 106


>gb|AFK41039.1| unknown [Medicago truncatula]
          Length = 318

 Score =  148 bits (374), Expect = 6e-34
 Identities = 71/80 (88%), Positives = 76/80 (95%)
 Frame = +3

Query: 3   RDTDVSIANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRLGLIPLTSDDAMTMRF 182
           RDTD S+ANALRRVMI+EVPTVAIDLVEIE NSSVLNDEF+AHRLGLIPLTS+ AM MRF
Sbjct: 27  RDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRF 86

Query: 183 SRDCDACDGDGQCEFCSVEF 242
           SRDCDACDGDGQCE+CSVEF
Sbjct: 87  SRDCDACDGDGQCEYCSVEF 106


>ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A [Vitis
           vinifera]
          Length = 318

 Score =  148 bits (374), Expect = 6e-34
 Identities = 72/80 (90%), Positives = 76/80 (95%)
 Frame = +3

Query: 3   RDTDVSIANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRLGLIPLTSDDAMTMRF 182
           R+TD S+ANALRRVMIAEVPTVAIDLVEIE NSSVLNDEF+AHRLGLIPLTS+ AM MRF
Sbjct: 27  RETDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRF 86

Query: 183 SRDCDACDGDGQCEFCSVEF 242
           SRDCDACDGDGQCEFCSVEF
Sbjct: 87  SRDCDACDGDGQCEFCSVEF 106


>ref|XP_004505300.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Cicer arietinum]
          Length = 319

 Score =  148 bits (373), Expect = 8e-34
 Identities = 70/80 (87%), Positives = 76/80 (95%)
 Frame = +3

Query: 3   RDTDVSIANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRLGLIPLTSDDAMTMRF 182
           RDTD S+ANALRRVMI+EVPT+AIDLVEIE NSSVLNDEF+AHRLGLIPLTS+ AM MRF
Sbjct: 27  RDTDASVANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRF 86

Query: 183 SRDCDACDGDGQCEFCSVEF 242
           SRDCDACDGDGQCE+CSVEF
Sbjct: 87  SRDCDACDGDGQCEYCSVEF 106


>gb|AAZ32911.1| DNA-directed RNA polymerase II third largest subunit [Medicago
           sativa]
          Length = 184

 Score =  148 bits (373), Expect = 8e-34
 Identities = 70/80 (87%), Positives = 76/80 (95%)
 Frame = +3

Query: 3   RDTDVSIANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRLGLIPLTSDDAMTMRF 182
           RDTD S+ANALRRVMI+EVPT+AIDLVEIE NSSVLNDEF+AHRLGLIPLTS+ AM MRF
Sbjct: 22  RDTDASVANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRF 81

Query: 183 SRDCDACDGDGQCEFCSVEF 242
           SRDCDACDGDGQCE+CSVEF
Sbjct: 82  SRDCDACDGDGQCEYCSVEF 101