BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00020716
         (790 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006664607.1| PREDICTED: RNA polymerase-associated protein...   286   7e-75
gb|EMT02912.1| RNA polymerase-associated RTF1-like protein [Aegi...   281   2e-73
gb|EEC69429.1| hypothetical protein OsI_38596 [Oryza sativa Indi...   280   3e-73
ref|XP_003575794.1| PREDICTED: RNA polymerase-associated protein...   279   7e-73
gb|ABA98830.1| Plus-3 domain containing protein, expressed [Oryz...   279   9e-73
gb|EAZ20740.1| hypothetical protein OsJ_36364 [Oryza sativa Japo...   279   9e-73
ref|NP_001066936.1| Os12g0535900 [Oryza sativa Japonica Group] g...   279   9e-73
dbj|BAJ96429.1| predicted protein [Hordeum vulgare subsp. vulgare]    278   2e-72
ref|XP_004962850.1| PREDICTED: RNA polymerase-associated protein...   277   3e-72
ref|XP_002442249.1| hypothetical protein SORBIDRAFT_08g017010 [S...   275   1e-71
gb|EMS56445.1| RNA polymerase-associated protein RTF1-like prote...   273   4e-71
ref|NP_001145747.1| hypothetical protein [Zea mays] gi|219884293...   264   3e-68
ref|NP_001168711.1| uncharacterized protein LOC100382503 [Zea ma...   262   1e-67
gb|ESW31293.1| hypothetical protein PHAVU_002G226300g [Phaseolus...   259   6e-67
ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein...   259   6e-67
ref|NP_176299.1| Paf1C-like transcription factor [Arabidopsis th...   259   1e-66
gb|AAM10312.1| At1g61040/T7P1_17 [Arabidopsis thaliana]               259   1e-66
ref|XP_006392066.1| hypothetical protein EUTSA_v10023338mg [Eutr...   258   2e-66
ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein...   257   3e-66
ref|XP_006486980.1| PREDICTED: RNA polymerase-associated protein...   257   4e-66

>ref|XP_006664607.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Oryza
           brachyantha]
          Length = 645

 Score =  286 bits (731), Expect = 7e-75
 Identities = 150/264 (56%), Positives = 183/264 (69%), Gaps = 2/264 (0%)
 Frame = -3

Query: 788 RMRQQDPDGYRSRLRDLTXXXXXXXXXXXXXSPPRHRSIGMAASPPSDNSNEGESGGRID 609
           RMRQQDP+GYR+R +DL               PPR R    AASPPSD SN+G++ GR +
Sbjct: 190 RMRQQDPEGYRNRFKDLIPQSGS---------PPRRR----AASPPSDGSNDGDNRGRTN 236

Query: 608 SEXXXXXXXXXXXXXXXDLSPSRLDAPKFEDVKEITIRRSKLVKWFMEPFFEELIAGCFV 429
                              SPSRLD  KF+DVK IT+RRSKLVKWFMEPFFE+L++GCFV
Sbjct: 237 DHGRITDDTRDDEFDE---SPSRLDPLKFDDVKSITLRRSKLVKWFMEPFFEDLVSGCFV 293

Query: 428 RLGIGKTRSGKPKYKLCLVRNVDATDPEKHYKLEHYTTYKWLNCIWGSDASAARWQMAMV 249
           RLGIGKT+SG P+Y+LC+VRNVDA DP++HYKLE YTT K+LN +W ++ +AARWQM  V
Sbjct: 294 RLGIGKTKSGIPQYRLCIVRNVDANDPDRHYKLEGYTTCKYLNVVWDNETTAARWQMTQV 353

Query: 248 SDSPPLVDEFNEWKWEVEKGNGRMPTRQEVLDKK--AEXXXXXXYSAATVKQMLLEKKSA 75
           SDS P  DEF +W    EK   R+PTRQEVL+KK   +      YSA TVK+ML EKKSA
Sbjct: 354 SDSFPTEDEFKQWLQGAEKNGVRIPTRQEVLEKKEAIQKAYTFVYSADTVKKMLREKKSA 413

Query: 74  SLRPVNIAAEKDRLRKEIEIAEAR 3
             RP+N+AAEKDRLR E+E++ AR
Sbjct: 414 VRRPINVAAEKDRLRNELEMSLAR 437


>gb|EMT02912.1| RNA polymerase-associated RTF1-like protein [Aegilops tauschii]
          Length = 661

 Score =  281 bits (719), Expect = 2e-73
 Identities = 149/264 (56%), Positives = 181/264 (68%), Gaps = 2/264 (0%)
 Frame = -3

Query: 788 RMRQQDPDGYRSRLRDLTXXXXXXXXXXXXXSPPRHRSIGMAASPPSDNSNEGESGGRID 609
           RMRQQDP+ YRSR +DL               P R R    A +PPSD SN+G   GR++
Sbjct: 203 RMRQQDPEAYRSRFKDLVPKSGSS--------PNRRR----AGTPPSDGSNDGGHRGRMN 250

Query: 608 SEXXXXXXXXXXXXXXXDLSPSRLDAPKFEDVKEITIRRSKLVKWFMEPFFEELIAGCFV 429
           +                  SPSRLD  KF+DVK IT+RRSKLVKWFMEPFFE+L++GCFV
Sbjct: 251 NHVGIAEDNRDDEFDE---SPSRLDPLKFDDVKSITLRRSKLVKWFMEPFFEDLVSGCFV 307

Query: 428 RLGIGKTRSGKPKYKLCLVRNVDATDPEKHYKLEHYTTYKWLNCIWGSDASAARWQMAMV 249
           RLGIGKT+SG PKY+LC+VRNVDA DP++ YKLE Y T K+LN +W ++A+AARWQM  V
Sbjct: 308 RLGIGKTKSGTPKYRLCIVRNVDANDPDRQYKLESYETCKYLNVVWDNEANAARWQMTQV 367

Query: 248 SDSPPLVDEFNEWKWEVEKGNGRMPTRQEVLDKKAE--XXXXXXYSAATVKQMLLEKKSA 75
           SDSP L +EF EW  E EK   R+PTRQEVL+KK +        YSAATV+QML EKKSA
Sbjct: 368 SDSPVLEEEFKEWLQEAEKNGVRIPTRQEVLEKKEDIIKAYNYVYSAATVQQMLREKKSA 427

Query: 74  SLRPVNIAAEKDRLRKEIEIAEAR 3
             RP+N+AAEKDRLR ++E+A  R
Sbjct: 428 VRRPMNVAAEKDRLRDQLEMALVR 451


>gb|EEC69429.1| hypothetical protein OsI_38596 [Oryza sativa Indica Group]
          Length = 780

 Score =  280 bits (717), Expect = 3e-73
 Identities = 148/264 (56%), Positives = 182/264 (68%), Gaps = 2/264 (0%)
 Frame = -3

Query: 788  RMRQQDPDGYRSRLRDLTXXXXXXXXXXXXXSPPRHRSIGMAASPPSDNSNEGESGGRID 609
            RMRQQDP+GYR+R +DL               PPR R    A SPPSD SN+G++ GRI 
Sbjct: 331  RMRQQDPEGYRNRFKDLIPQSGS---------PPRRR----AGSPPSDGSNDGDNRGRIT 377

Query: 608  SEXXXXXXXXXXXXXXXDLSPSRLDAPKFEDVKEITIRRSKLVKWFMEPFFEELIAGCFV 429
             E                 SPSRLD  KF+DVK IT+RRSKLVKWFMEPFFE+L++GCFV
Sbjct: 378  DETRDDEFDE---------SPSRLDPLKFDDVKSITLRRSKLVKWFMEPFFEDLVSGCFV 428

Query: 428  RLGIGKTRSGKPKYKLCLVRNVDATDPEKHYKLEHYTTYKWLNCIWGSDASAARWQMAMV 249
            RLGIGK++SG P Y+LC+VRNVDA DP++ YKLE YTT K+LN +W ++A+AARWQM  V
Sbjct: 429  RLGIGKSKSGTPDYRLCIVRNVDANDPDRKYKLEGYTTCKYLNVVWDNEANAARWQMTQV 488

Query: 248  SDSPPLVDEFNEWKWEVEKGNGRMPTRQEVLDKK--AEXXXXXXYSAATVKQMLLEKKSA 75
            SDS P  +EF +W    EK   R+PTRQEVL+KK   +      YSA TV++ML EKKSA
Sbjct: 489  SDSFPSEEEFKKWLQVAEKNGVRVPTRQEVLEKKEAIQQAYNFVYSARTVQKMLKEKKSA 548

Query: 74   SLRPVNIAAEKDRLRKEIEIAEAR 3
              RP+N+AAEKDRLR E+++A AR
Sbjct: 549  IRRPINVAAEKDRLRNELDMAIAR 572


>ref|XP_003575794.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog
           [Brachypodium distachyon]
          Length = 658

 Score =  279 bits (714), Expect = 7e-73
 Identities = 148/264 (56%), Positives = 184/264 (69%), Gaps = 2/264 (0%)
 Frame = -3

Query: 788 RMRQQDPDGYRSRLRDLTXXXXXXXXXXXXXSPPRHRSIGMAASPPSDNSNEGESGGRID 609
           RMRQQDP+GYR+R +DL               P R R    A SPPSD SN+G++ GR++
Sbjct: 200 RMRQQDPEGYRNRFKDLVTKTGS---------PTRRR----AGSPPSDGSNDGDNRGRMN 246

Query: 608 SEXXXXXXXXXXXXXXXDLSPSRLDAPKFEDVKEITIRRSKLVKWFMEPFFEELIAGCFV 429
                              SPSRL   KF+DVK IT+RR+KLVKWFMEPFFE+L++GCFV
Sbjct: 247 DHGGIADDAREDEFDE---SPSRLVPLKFDDVKSITLRRTKLVKWFMEPFFEDLVSGCFV 303

Query: 428 RLGIGKTRSGKPKYKLCLVRNVDATDPEKHYKLEHYTTYKWLNCIWGSDASAARWQMAMV 249
           R+GIGKT+SG PKY+LC+VRNVDA+DP++ YKL+ YTT K+LN +W ++A+AARWQM  V
Sbjct: 304 RIGIGKTKSG-PKYRLCIVRNVDASDPDRQYKLDSYTTCKYLNVVWDNEANAARWQMTQV 362

Query: 248 SDSPPLVDEFNEWKWEVEKGNGRMPTRQEVLDKK--AEXXXXXXYSAATVKQMLLEKKSA 75
           SDSP L +EF EW  E EK   R+PTRQEVL+KK   +      YSAATVKQML EKKSA
Sbjct: 363 SDSPVLEEEFKEWLQEAEKNGVRIPTRQEVLEKKEAIQKAYTFVYSAATVKQMLREKKSA 422

Query: 74  SLRPVNIAAEKDRLRKEIEIAEAR 3
             RP+N+AAEKDRLR ++E+A  R
Sbjct: 423 VRRPMNVAAEKDRLRDQLEMALVR 446


>gb|ABA98830.1| Plus-3 domain containing protein, expressed [Oryza sativa Japonica
           Group] gi|77556035|gb|ABA98831.1| Plus-3 domain
           containing protein, expressed [Oryza sativa Japonica
           Group] gi|215697432|dbj|BAG91426.1| unnamed protein
           product [Oryza sativa Japonica Group]
          Length = 522

 Score =  279 bits (713), Expect = 9e-73
 Identities = 147/264 (55%), Positives = 182/264 (68%), Gaps = 2/264 (0%)
 Frame = -3

Query: 788 RMRQQDPDGYRSRLRDLTXXXXXXXXXXXXXSPPRHRSIGMAASPPSDNSNEGESGGRID 609
           RMRQQDP+GYR+R +DL               PPR R    A SPPSD SN+G++ GRI 
Sbjct: 73  RMRQQDPEGYRNRFKDLIPQSGS---------PPRRR----AGSPPSDGSNDGDNRGRIT 119

Query: 608 SEXXXXXXXXXXXXXXXDLSPSRLDAPKFEDVKEITIRRSKLVKWFMEPFFEELIAGCFV 429
            E                 SPSRLD  KF+DVK IT+RRSKLVKWFMEPFFE+L++GCFV
Sbjct: 120 DETRDDEFDE---------SPSRLDPLKFDDVKSITLRRSKLVKWFMEPFFEDLVSGCFV 170

Query: 428 RLGIGKTRSGKPKYKLCLVRNVDATDPEKHYKLEHYTTYKWLNCIWGSDASAARWQMAMV 249
           RLGIGK++SG P Y+LC+VRNVDA DP++ YKLE YTT K+LN +W ++A+AARWQM  V
Sbjct: 171 RLGIGKSKSGTPDYRLCIVRNVDANDPDRKYKLEGYTTCKYLNVVWDNEANAARWQMTQV 230

Query: 248 SDSPPLVDEFNEWKWEVEKGNGRMPTRQEVLDKK--AEXXXXXXYSAATVKQMLLEKKSA 75
           SDS P  +EF +W    EK   R+PTRQ+VL+KK   +      YSA TV++ML EKKSA
Sbjct: 231 SDSFPSEEEFKKWLQVAEKNGVRVPTRQDVLEKKEAIQQAYNFVYSAHTVQKMLKEKKSA 290

Query: 74  SLRPVNIAAEKDRLRKEIEIAEAR 3
             RP+N+AAEKDRLR E+++A AR
Sbjct: 291 IRRPINVAAEKDRLRNELDMAIAR 314


>gb|EAZ20740.1| hypothetical protein OsJ_36364 [Oryza sativa Japonica Group]
          Length = 653

 Score =  279 bits (713), Expect = 9e-73
 Identities = 147/264 (55%), Positives = 182/264 (68%), Gaps = 2/264 (0%)
 Frame = -3

Query: 788 RMRQQDPDGYRSRLRDLTXXXXXXXXXXXXXSPPRHRSIGMAASPPSDNSNEGESGGRID 609
           RMRQQDP+GYR+R +DL               PPR R    A SPPSD SN+G++ GRI 
Sbjct: 204 RMRQQDPEGYRNRFKDLIPQSGS---------PPRRR----AGSPPSDGSNDGDNRGRIT 250

Query: 608 SEXXXXXXXXXXXXXXXDLSPSRLDAPKFEDVKEITIRRSKLVKWFMEPFFEELIAGCFV 429
            E                 SPSRLD  KF+DVK IT+RRSKLVKWFMEPFFE+L++GCFV
Sbjct: 251 DETRDDEFDE---------SPSRLDPLKFDDVKSITLRRSKLVKWFMEPFFEDLVSGCFV 301

Query: 428 RLGIGKTRSGKPKYKLCLVRNVDATDPEKHYKLEHYTTYKWLNCIWGSDASAARWQMAMV 249
           RLGIGK++SG P Y+LC+VRNVDA DP++ YKLE YTT K+LN +W ++A+AARWQM  V
Sbjct: 302 RLGIGKSKSGTPDYRLCIVRNVDANDPDRKYKLEGYTTCKYLNVVWDNEANAARWQMTQV 361

Query: 248 SDSPPLVDEFNEWKWEVEKGNGRMPTRQEVLDKK--AEXXXXXXYSAATVKQMLLEKKSA 75
           SDS P  +EF +W    EK   R+PTRQ+VL+KK   +      YSA TV++ML EKKSA
Sbjct: 362 SDSFPSEEEFKKWLQVAEKNGVRVPTRQDVLEKKEAIQQAYNFVYSAHTVQKMLKEKKSA 421

Query: 74  SLRPVNIAAEKDRLRKEIEIAEAR 3
             RP+N+AAEKDRLR E+++A AR
Sbjct: 422 IRRPINVAAEKDRLRNELDMAIAR 445


>ref|NP_001066936.1| Os12g0535900 [Oryza sativa Japonica Group]
           gi|113649443|dbj|BAF29955.1| Os12g0535900, partial
           [Oryza sativa Japonica Group]
          Length = 599

 Score =  279 bits (713), Expect = 9e-73
 Identities = 147/264 (55%), Positives = 182/264 (68%), Gaps = 2/264 (0%)
 Frame = -3

Query: 788 RMRQQDPDGYRSRLRDLTXXXXXXXXXXXXXSPPRHRSIGMAASPPSDNSNEGESGGRID 609
           RMRQQDP+GYR+R +DL               PPR R    A SPPSD SN+G++ GRI 
Sbjct: 150 RMRQQDPEGYRNRFKDLIPQSGS---------PPRRR----AGSPPSDGSNDGDNRGRIT 196

Query: 608 SEXXXXXXXXXXXXXXXDLSPSRLDAPKFEDVKEITIRRSKLVKWFMEPFFEELIAGCFV 429
            E                 SPSRLD  KF+DVK IT+RRSKLVKWFMEPFFE+L++GCFV
Sbjct: 197 DETRDDEFDE---------SPSRLDPLKFDDVKSITLRRSKLVKWFMEPFFEDLVSGCFV 247

Query: 428 RLGIGKTRSGKPKYKLCLVRNVDATDPEKHYKLEHYTTYKWLNCIWGSDASAARWQMAMV 249
           RLGIGK++SG P Y+LC+VRNVDA DP++ YKLE YTT K+LN +W ++A+AARWQM  V
Sbjct: 248 RLGIGKSKSGTPDYRLCIVRNVDANDPDRKYKLEGYTTCKYLNVVWDNEANAARWQMTQV 307

Query: 248 SDSPPLVDEFNEWKWEVEKGNGRMPTRQEVLDKK--AEXXXXXXYSAATVKQMLLEKKSA 75
           SDS P  +EF +W    EK   R+PTRQ+VL+KK   +      YSA TV++ML EKKSA
Sbjct: 308 SDSFPSEEEFKKWLQVAEKNGVRVPTRQDVLEKKEAIQQAYNFVYSAHTVQKMLKEKKSA 367

Query: 74  SLRPVNIAAEKDRLRKEIEIAEAR 3
             RP+N+AAEKDRLR E+++A AR
Sbjct: 368 IRRPINVAAEKDRLRNELDMAIAR 391


>dbj|BAJ96429.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 661

 Score =  278 bits (711), Expect = 2e-72
 Identities = 148/264 (56%), Positives = 180/264 (68%), Gaps = 2/264 (0%)
 Frame = -3

Query: 788 RMRQQDPDGYRSRLRDLTXXXXXXXXXXXXXSPPRHRSIGMAASPPSDNSNEGESGGRID 609
           RMRQQDPDGYR+R +DL               P R R    A SPPSD SN+G + GR++
Sbjct: 203 RMRQQDPDGYRNRFKDLIAKSGGS--------PNRRR----AGSPPSDGSNDGGNRGRMN 250

Query: 608 SEXXXXXXXXXXXXXXXDLSPSRLDAPKFEDVKEITIRRSKLVKWFMEPFFEELIAGCFV 429
                              SPSRLD  KF+DVK IT+RRSKLVKWFMEPFFE+L++GCFV
Sbjct: 251 DHAGIAEDNRDDEFDE---SPSRLDPLKFDDVKSITLRRSKLVKWFMEPFFEDLVSGCFV 307

Query: 428 RLGIGKTRSGKPKYKLCLVRNVDATDPEKHYKLEHYTTYKWLNCIWGSDASAARWQMAMV 249
           RLGIGKT+SG PKY+LC+VRNVDA+DP++ YKLE Y T K+LN +W ++A+AARWQM  V
Sbjct: 308 RLGIGKTKSGTPKYRLCIVRNVDASDPDRQYKLESYETCKYLNVVWDNEANAARWQMTQV 367

Query: 248 SDSPPLVDEFNEWKWEVEKGNGRMPTRQEVLDKKAE--XXXXXXYSAATVKQMLLEKKSA 75
           SDSP L +EF EW  E EK   R+PTRQEVL+KK          YSA TV++ML  KKSA
Sbjct: 368 SDSPVLEEEFKEWLQEAEKNGVRIPTRQEVLEKKEAIIEAYNYVYSADTVQKMLQAKKSA 427

Query: 74  SLRPVNIAAEKDRLRKEIEIAEAR 3
             RP+N+AAEKDRLR ++E+A  R
Sbjct: 428 VRRPMNVAAEKDRLRDQLEMALVR 451


>ref|XP_004962850.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Setaria
           italica]
          Length = 650

 Score =  277 bits (708), Expect = 3e-72
 Identities = 148/264 (56%), Positives = 179/264 (67%), Gaps = 2/264 (0%)
 Frame = -3

Query: 788 RMRQQDPDGYRSRLRDLTXXXXXXXXXXXXXSPPRHRSIGMAASPPSDNSNEGESGGRID 609
           RMRQQDP+ YR+R +DL               P RHR    A SPPSD SN+G++ GR+ 
Sbjct: 195 RMRQQDPEAYRNRFKDLLPQSGS---------PTRHR----AGSPPSDGSNDGDNRGRLK 241

Query: 608 SEXXXXXXXXXXXXXXXDLSPSRLDAPKFEDVKEITIRRSKLVKWFMEPFFEELIAGCFV 429
                              SPSR+D  KF+DVK IT+RRSKLVKWFMEPFFEE ++GCFV
Sbjct: 242 DHGRIADDGRDDEFDE---SPSRIDPLKFDDVKSITLRRSKLVKWFMEPFFEETVSGCFV 298

Query: 428 RLGIGKTRSGKPKYKLCLVRNVDATDPEKHYKLEHYTTYKWLNCIWGSDASAARWQMAMV 249
           RLGIGKT+SG P+Y+LC+VRNVDA+DP++ YKLE YTT K+LN +W S+A+AARWQM  V
Sbjct: 299 RLGIGKTKSGTPRYRLCIVRNVDASDPDRKYKLESYTTCKYLNVVWDSEANAARWQMTQV 358

Query: 248 SDSPPLVDEFNEWKWEVEKGNGRMPTRQEVLDKK--AEXXXXXXYSAATVKQMLLEKKSA 75
           SDSPP  +EF EW  E EK   R+PTRQEVL+KK   +      YSA  VK ML E KSA
Sbjct: 359 SDSPPNEEEFKEWLQEAEKNGVRIPTRQEVLEKKDAIQKAYNYVYSADAVKNMLRE-KSA 417

Query: 74  SLRPVNIAAEKDRLRKEIEIAEAR 3
             R +N+AAEKDRLR E+EIA +R
Sbjct: 418 VRRTINVAAEKDRLRNELEIALSR 441


>ref|XP_002442249.1| hypothetical protein SORBIDRAFT_08g017010 [Sorghum bicolor]
           gi|241942942|gb|EES16087.1| hypothetical protein
           SORBIDRAFT_08g017010 [Sorghum bicolor]
          Length = 656

 Score =  275 bits (704), Expect = 1e-71
 Identities = 147/263 (55%), Positives = 179/263 (68%), Gaps = 2/263 (0%)
 Frame = -3

Query: 785 MRQQDPDGYRSRLRDLTXXXXXXXXXXXXXSPPRHRSIGMAASPPSDNSNEGESGGRIDS 606
           MRQQ P+   SR  DL               P R R    A SPPSD SN+G++ GR++ 
Sbjct: 202 MRQQAPEARTSRFTDLLPHSGS---------PTRRR----AGSPPSDGSNDGDNRGRLND 248

Query: 605 EXXXXXXXXXXXXXXXDLSPSRLDAPKFEDVKEITIRRSKLVKWFMEPFFEELIAGCFVR 426
                             SPSRLD  KF+DVK IT+RRSKLVKWFMEPFF++LI+GCFVR
Sbjct: 249 HGRIADDSRDDEFDE---SPSRLDPLKFDDVKSITLRRSKLVKWFMEPFFDDLISGCFVR 305

Query: 425 LGIGKTRSGKPKYKLCLVRNVDATDPEKHYKLEHYTTYKWLNCIWGSDASAARWQMAMVS 246
           LGIGKT+SG P+Y+LC+VRNVDA+DP++ YKLE Y+TYK+LN +WGS+A AARWQM  VS
Sbjct: 306 LGIGKTKSGNPRYRLCIVRNVDASDPDRKYKLESYSTYKYLNVVWGSEADAARWQMTQVS 365

Query: 245 DSPPLVDEFNEWKWEVEKGNGRMPTRQEVLDKK--AEXXXXXXYSAATVKQMLLEKKSAS 72
           DSPP  +EF EW  E EK   R+PTRQEVL+KK   +      YSA TV+QML E KSA 
Sbjct: 366 DSPPNEEEFKEWLQEAEKNGARIPTRQEVLEKKESIQKAYNFVYSAVTVQQMLKE-KSAV 424

Query: 71  LRPVNIAAEKDRLRKEIEIAEAR 3
            RP+N+AAEKDRLR E+E+A +R
Sbjct: 425 RRPINVAAEKDRLRSELEMALSR 447


>gb|EMS56445.1| RNA polymerase-associated protein RTF1-like protein [Triticum
           urartu]
          Length = 681

 Score =  273 bits (699), Expect = 4e-71
 Identities = 147/264 (55%), Positives = 180/264 (68%), Gaps = 2/264 (0%)
 Frame = -3

Query: 788 RMRQQDPDGYRSRLRDLTXXXXXXXXXXXXXSPPRHRSIGMAASPPSDNSNEGESGGRID 609
           RMRQQDP+GYR+R +DL               P R R    A +PPSD SN+G + GR++
Sbjct: 224 RMRQQDPEGYRNRFKDLVPKSGGS--------PNRRR----AGTPPSDGSNDGGNRGRMN 271

Query: 608 SEXXXXXXXXXXXXXXXDLSPSRLDAPKFEDVKEITIRRSKLVKWFMEPFFEELIAGCFV 429
                              SPSRLD  KF+DVK IT+RRSKLVKWFMEPFFE+L++GCFV
Sbjct: 272 DHVGIAEDNRDDEFDE---SPSRLDPLKFDDVKSITLRRSKLVKWFMEPFFEDLVSGCFV 328

Query: 428 RLGIGKTRSGKPKYKLCLVRNVDATDPEKHYKLEHYTTYKWLNCIWGSDASAARWQMAMV 249
           RLGIGKT+SG PKY+LC+VRNVDA DP++ YKLE Y T K+LN +W ++A+AARWQM  V
Sbjct: 329 RLGIGKTKSGTPKYRLCIVRNVDANDPDRQYKLESYETCKYLNVVWDNEANAARWQMTQV 388

Query: 248 SDSPPLVDEFNEWKWEVEKGNGRMPTRQEVLDKKAE--XXXXXXYSAATVKQMLLEKKSA 75
           SDSP L +EF EW  E EK   R+PTRQEVL+KK          YSAATV++ML E KSA
Sbjct: 389 SDSPVLEEEFKEWLQEAEKNGVRIPTRQEVLEKKEAIIEAYNFVYSAATVQRMLKE-KSA 447

Query: 74  SLRPVNIAAEKDRLRKEIEIAEAR 3
             RP+N+AAEKDRLR ++E+A  R
Sbjct: 448 VRRPMNVAAEKDRLRDQLEMALVR 471


>ref|NP_001145747.1| hypothetical protein [Zea mays] gi|219884293|gb|ACL52521.1| unknown
           [Zea mays] gi|414878213|tpg|DAA55344.1| TPA:
           hypothetical protein ZEAMMB73_654453 [Zea mays]
          Length = 647

 Score =  264 bits (674), Expect = 3e-68
 Identities = 146/264 (55%), Positives = 178/264 (67%), Gaps = 2/264 (0%)
 Frame = -3

Query: 788 RMRQQDPDGYRSRLRDLTXXXXXXXXXXXXXSPPRHRSIGMAASPPSDNSNEGESGGRID 609
           RMRQQ P+    R  DL               P R R    A SPPSD SN+G+  GR +
Sbjct: 194 RMRQQAPEA--RRFTDLLPRSGS---------PTRRR----AGSPPSDGSNDGDGRGRPN 238

Query: 608 SEXXXXXXXXXXXXXXXDLSPSRLDAPKFEDVKEITIRRSKLVKWFMEPFFEELIAGCFV 429
                              SPSRLD  KF+DVK IT+RRSKLVKWFMEPFF++LI+GCFV
Sbjct: 239 DHGRIADDSRDDEFDE---SPSRLDPLKFDDVKSITLRRSKLVKWFMEPFFDDLISGCFV 295

Query: 428 RLGIGKTRSGKPKYKLCLVRNVDATDPEKHYKLEHYTTYKWLNCIWGSDASAARWQMAMV 249
           RLGIG+T++G P+Y+LC+VRNVDA+DP+++YKLE Y+T K+LN +W S+A+AARWQM  V
Sbjct: 296 RLGIGQTKNGTPRYRLCIVRNVDASDPDRNYKLESYSTCKYLNVVWDSEANAARWQMTQV 355

Query: 248 SDSPPLVDEFNEWKWEVEKGNGRMPTRQEVLDKK--AEXXXXXXYSAATVKQMLLEKKSA 75
           SDSPP  +EF EW  E EK   R+PTRQEVLDKK   +      YSAATV+QML E KSA
Sbjct: 356 SDSPPNEEEFKEWLQEAEKHGARIPTRQEVLDKKEAIQEAYNFVYSAATVQQMLRE-KSA 414

Query: 74  SLRPVNIAAEKDRLRKEIEIAEAR 3
             RP+NIAAEKDRLR E+E+A +R
Sbjct: 415 VRRPINIAAEKDRLRSELEMALSR 438


>ref|NP_001168711.1| uncharacterized protein LOC100382503 [Zea mays]
           gi|223950353|gb|ACN29260.1| unknown [Zea mays]
           gi|413916604|gb|AFW56536.1| plus-3 domain-containing
           protein [Zea mays]
          Length = 650

 Score =  262 bits (669), Expect = 1e-67
 Identities = 144/265 (54%), Positives = 180/265 (67%), Gaps = 3/265 (1%)
 Frame = -3

Query: 788 RMRQQDPDGYRSRLRDLTXXXXXXXXXXXXXSPPRHRSIGM-AASPPSDNSNEGESGGRI 612
           RMRQQ P+    R+ DL               P    SI   A SPPSD SN+G + GR+
Sbjct: 197 RMRQQAPEA--RRITDLL--------------PHSGSSIRRRAGSPPSDGSNDGNNRGRM 240

Query: 611 DSEXXXXXXXXXXXXXXXDLSPSRLDAPKFEDVKEITIRRSKLVKWFMEPFFEELIAGCF 432
           +                   SPSRLD  KF+DVK IT+RRSKLVKWFMEPFF++LI+GCF
Sbjct: 241 NDHGRIAGDGRDDEFDE---SPSRLDPLKFDDVKSITLRRSKLVKWFMEPFFDDLISGCF 297

Query: 431 VRLGIGKTRSGKPKYKLCLVRNVDATDPEKHYKLEHYTTYKWLNCIWGSDASAARWQMAM 252
           VRLGIGKT++G P Y+LC+VRNVDA+DP+++YKLE+Y+T K+LN +W S+A+AARWQM  
Sbjct: 298 VRLGIGKTKNGTPSYRLCIVRNVDASDPDRNYKLENYSTCKYLNVVWDSEANAARWQMTQ 357

Query: 251 VSDSPPLVDEFNEWKWEVEKGNGRMPTRQEVLDKK--AEXXXXXXYSAATVKQMLLEKKS 78
           VSDSPP  +EF +W    EK   R+PTRQEVLDKK   +      YSAATV+QM L++KS
Sbjct: 358 VSDSPPNEEEFKDWLQAAEKNGARIPTRQEVLDKKEAIQNAYNFVYSAATVQQM-LQEKS 416

Query: 77  ASLRPVNIAAEKDRLRKEIEIAEAR 3
           A  RP+NIAAEKDRLR E+E+A +R
Sbjct: 417 AVRRPINIAAEKDRLRSELEMALSR 441


>gb|ESW31293.1| hypothetical protein PHAVU_002G226300g [Phaseolus vulgaris]
          Length = 654

 Score =  259 bits (663), Expect = 6e-67
 Identities = 136/264 (51%), Positives = 185/264 (70%), Gaps = 2/264 (0%)
 Frame = -3

Query: 788 RMRQQDPDGYRSRLRDLTXXXXXXXXXXXXXSPPRHRSIGMAASPPSDNSNEGESGGRID 609
           R++QQDP+ +R +LR+ +              PP+ +    + S  S + +E ES    D
Sbjct: 193 RLKQQDPEAHR-KLREASRNAGPRHFS-----PPKRKPF-TSTSLSSSSHSESESRSHSD 245

Query: 608 SEXXXXXXXXXXXXXXXDLSPSRLDAPKFEDVKEITIRRSKLVKWFMEPFFEELIAGCFV 429
            E                L+ S  + P F+D+KEITIRRSKL KWFMEPFFEELI GCFV
Sbjct: 246 DEGSTGDGGIGDSDDDRALTGS--EGPSFQDIKEITIRRSKLAKWFMEPFFEELIVGCFV 303

Query: 428 RLGIGKTRSGKPKYKLCLVRNVDATDPEKHYKLEHYTTYKWLNCIWGSDASAARWQMAMV 249
           R+GIG++++G P Y+LC+V+NVDA++P++ YKLE+ TTYK+LN +WG+++SAARWQMAMV
Sbjct: 304 RVGIGRSKTG-PIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMV 362

Query: 248 SDSPPLVDEFNEWKWEVEKGNGRMPTRQEVLDKK--AEXXXXXXYSAATVKQMLLEKKSA 75
           SDS PL +EF +W  EV++  GRMPT+Q+VL+KK   +      YSAATVKQML EKKSA
Sbjct: 363 SDSAPLEEEFKQWVKEVDRSGGRMPTKQDVLEKKQAIQKAITFVYSAATVKQMLQEKKSA 422

Query: 74  SLRPVNIAAEKDRLRKEIEIAEAR 3
           S RP+N+AAEKDRLR+E+EIA+++
Sbjct: 423 STRPLNVAAEKDRLRRELEIAQSK 446


>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform
           X1 [Glycine max] gi|571466984|ref|XP_006583809.1|
           PREDICTED: RNA polymerase-associated protein RTF1
           homolog isoform X2 [Glycine max]
          Length = 656

 Score =  259 bits (663), Expect = 6e-67
 Identities = 137/264 (51%), Positives = 185/264 (70%), Gaps = 2/264 (0%)
 Frame = -3

Query: 788 RMRQQDPDGYRSRLRDLTXXXXXXXXXXXXXSPPRHRSIGMAASPPSDNSNEGESGGRID 609
           R++QQDP+ +R RLR+ +              PP+ +    + S  S + +E ES    D
Sbjct: 192 RLKQQDPEAHR-RLREASRNAGSRHFS-----PPKRKPF-TSTSLSSSSHSESESRSHSD 244

Query: 608 SEXXXXXXXXXXXXXXXDLSPSRLDAPKFEDVKEITIRRSKLVKWFMEPFFEELIAGCFV 429
            E                L+ S  + P F+DVKEITIRRSKL KWFMEPFFEELI GCFV
Sbjct: 245 DEGSTGDGGIVDSDDDRALAGS--EGPSFQDVKEITIRRSKLAKWFMEPFFEELIVGCFV 302

Query: 428 RLGIGKTRSGKPKYKLCLVRNVDATDPEKHYKLEHYTTYKWLNCIWGSDASAARWQMAMV 249
           R+GIG++++G P Y+LC+V+NVDA++P++ YKLE+ TTYK+LN +WG+++SAARWQMAMV
Sbjct: 303 RVGIGRSKTG-PIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMV 361

Query: 248 SDSPPLVDEFNEWKWEVEKGNGRMPTRQEVLDKK--AEXXXXXXYSAATVKQMLLEKKSA 75
           SDS PL +EF +W  EV++  GRMP++Q+VL+KK   +      YSAATVKQML EKKSA
Sbjct: 362 SDSAPLEEEFKQWVKEVDRSGGRMPSKQDVLEKKQAIQKAITFVYSAATVKQMLQEKKSA 421

Query: 74  SLRPVNIAAEKDRLRKEIEIAEAR 3
           S RP+N+AAEKDRLR+E+EIA+++
Sbjct: 422 STRPLNVAAEKDRLRRELEIAQSK 445


>ref|NP_176299.1| Paf1C-like transcription factor [Arabidopsis thaliana]
           gi|12323334|gb|AAG51642.1|AC018908_8 unknown protein;
           78902-80833 [Arabidopsis thaliana]
           gi|332195649|gb|AEE33770.1| Paf1C-like transcription
           factor [Arabidopsis thaliana]
          Length = 643

 Score =  259 bits (661), Expect = 1e-66
 Identities = 140/270 (51%), Positives = 182/270 (67%), Gaps = 8/270 (2%)
 Frame = -3

Query: 788 RMRQQDPDGYRSRLRDLTXXXXXXXXXXXXXSPPRHRSIGMAASPPSDNSN------EGE 627
           RM+QQDP   R +LRD +               P   S  +++S  SD+ +      EG 
Sbjct: 190 RMKQQDPAALR-KLRDASKGGSGSRDFSSTKRKPLASS-NLSSSSQSDSDSRSQSDDEGS 247

Query: 626 SGGRIDSEXXXXXXXXXXXXXXXDLSPSRLDAPKFEDVKEITIRRSKLVKWFMEPFFEEL 447
           +GG +DS+                    R D P FEDVKE+TIRRSKL KW MEPFFEEL
Sbjct: 248 NGGMLDSDD------------------DRSDVPTFEDVKEVTIRRSKLAKWLMEPFFEEL 289

Query: 446 IAGCFVRLGIGKTRSGKPKYKLCLVRNVDATDPEKHYKLEHYTTYKWLNCIWGSDASAAR 267
           I GCFVR+GIG+++SG P Y+LC V+NVDATDP+K YKLE+ TT+K+LN +WG++ SAAR
Sbjct: 290 IVGCFVRVGIGRSKSG-PIYRLCWVKNVDATDPDKTYKLENKTTHKYLNVVWGNETSAAR 348

Query: 266 WQMAMVSDSPPLVDEFNEWKWEVEKGNGRMPTRQEVLDKK--AEXXXXXXYSAATVKQML 93
           WQMAM+SD  PL +E+ +W  EVE+ NGRMPT+Q++ +KK   +      YSA TVKQML
Sbjct: 349 WQMAMISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIQRTNSFVYSAETVKQML 408

Query: 92  LEKKSASLRPVNIAAEKDRLRKEIEIAEAR 3
            EKKSAS+RP+N+AAEKDRLRKE+EIA+++
Sbjct: 409 QEKKSASVRPMNVAAEKDRLRKELEIAQSK 438


>gb|AAM10312.1| At1g61040/T7P1_17 [Arabidopsis thaliana]
          Length = 643

 Score =  259 bits (661), Expect = 1e-66
 Identities = 140/270 (51%), Positives = 182/270 (67%), Gaps = 8/270 (2%)
 Frame = -3

Query: 788 RMRQQDPDGYRSRLRDLTXXXXXXXXXXXXXSPPRHRSIGMAASPPSDNSN------EGE 627
           RM+QQDP   R +LRD +               P   S  +++S  SD+ +      EG 
Sbjct: 190 RMKQQDPAALR-KLRDASKGGSGSRDFSSTKRKPLASS-NLSSSSQSDSDSRSQSDDEGS 247

Query: 626 SGGRIDSEXXXXXXXXXXXXXXXDLSPSRLDAPKFEDVKEITIRRSKLVKWFMEPFFEEL 447
           +GG +DS+                    R D P FEDVKE+TIRRSKL KW MEPFFEEL
Sbjct: 248 NGGMLDSDD------------------DRSDVPTFEDVKEVTIRRSKLAKWLMEPFFEEL 289

Query: 446 IAGCFVRLGIGKTRSGKPKYKLCLVRNVDATDPEKHYKLEHYTTYKWLNCIWGSDASAAR 267
           I GCFVR+GIG+++SG P Y+LC V+NVDATDP+K YKLE+ TT+K+LN +WG++ SAAR
Sbjct: 290 IVGCFVRVGIGRSKSG-PIYRLCWVKNVDATDPDKTYKLENKTTHKYLNVVWGNETSAAR 348

Query: 266 WQMAMVSDSPPLVDEFNEWKWEVEKGNGRMPTRQEVLDKK--AEXXXXXXYSAATVKQML 93
           WQMAM+SD  PL +E+ +W  EVE+ NGRMPT+Q++ +KK   +      YSA TVKQML
Sbjct: 349 WQMAMISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIQRTNSFVYSAETVKQML 408

Query: 92  LEKKSASLRPVNIAAEKDRLRKEIEIAEAR 3
            EKKSAS+RP+N+AAEKDRLRKE+EIA+++
Sbjct: 409 QEKKSASVRPMNVAAEKDRLRKELEIAQSK 438


>ref|XP_006392066.1| hypothetical protein EUTSA_v10023338mg [Eutrema salsugineum]
           gi|557088572|gb|ESQ29352.1| hypothetical protein
           EUTSA_v10023338mg [Eutrema salsugineum]
          Length = 644

 Score =  258 bits (659), Expect = 2e-66
 Identities = 139/270 (51%), Positives = 182/270 (67%), Gaps = 8/270 (2%)
 Frame = -3

Query: 788 RMRQQDPDGYRSRLRDLTXXXXXXXXXXXXXSPPRHRSIGMAASPPSDNSN------EGE 627
           RM+QQ+P   R +LRD +               P   S  ++ S  SD+ +      EG 
Sbjct: 192 RMKQQEPASLR-KLRDASKGGSGSRDFSSMKRKPLASS-NLSNSSQSDSDSRSQSDDEGS 249

Query: 626 SGGRIDSEXXXXXXXXXXXXXXXDLSPSRLDAPKFEDVKEITIRRSKLVKWFMEPFFEEL 447
           +GG +DS+                    R D P FED+K+ITIRRSKL KW MEPFFEEL
Sbjct: 250 NGGMVDSDD------------------DRSDVPTFEDIKDITIRRSKLAKWLMEPFFEEL 291

Query: 446 IAGCFVRLGIGKTRSGKPKYKLCLVRNVDATDPEKHYKLEHYTTYKWLNCIWGSDASAAR 267
           I GCFVR+GIG++++G P Y+LC+V+NVDATDP+K YKLE+ TT+K+LNCIWG ++SAAR
Sbjct: 292 IVGCFVRVGIGRSKNG-PIYRLCMVKNVDATDPDKTYKLENKTTHKYLNCIWGHESSAAR 350

Query: 266 WQMAMVSDSPPLVDEFNEWKWEVEKGNGRMPTRQEVLDKK--AEXXXXXXYSAATVKQML 93
           WQMAM+SD  PL +E+ +W  EVE+ NGRMPT+Q++ +KK   +      YSA TVKQML
Sbjct: 351 WQMAMISDGYPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIKRINSFVYSAETVKQML 410

Query: 92  LEKKSASLRPVNIAAEKDRLRKEIEIAEAR 3
            EKKSAS+RP+NIAAEKDRLRKE+E+A+ +
Sbjct: 411 QEKKSASVRPMNIAAEKDRLRKELEVAQIK 440


>ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
           max]
          Length = 656

 Score =  257 bits (657), Expect = 3e-66
 Identities = 135/264 (51%), Positives = 185/264 (70%), Gaps = 2/264 (0%)
 Frame = -3

Query: 788 RMRQQDPDGYRSRLRDLTXXXXXXXXXXXXXSPPRHRSIGMAASPPSDNSNEGESGGRID 609
           R++QQDP+ +R RLR+ +              PP+ ++   + S  S + +E ES    D
Sbjct: 192 RLKQQDPEAHR-RLREASRNAGPRHFS-----PPKRKTF-TSTSLSSSSHSESESRSHSD 244

Query: 608 SEXXXXXXXXXXXXXXXDLSPSRLDAPKFEDVKEITIRRSKLVKWFMEPFFEELIAGCFV 429
            E                L+ S  + P F+D+KEITIRRSKL KWFMEPFFEELI GCFV
Sbjct: 245 DEGSTGDGGIADSDDDRALAGS--EGPSFQDIKEITIRRSKLAKWFMEPFFEELIVGCFV 302

Query: 428 RLGIGKTRSGKPKYKLCLVRNVDATDPEKHYKLEHYTTYKWLNCIWGSDASAARWQMAMV 249
           R+GIG++++G P Y+LC+V+NVDA++P++ YKLE+ TTYK+LN +WG+++SAARWQMAMV
Sbjct: 303 RVGIGRSKTG-PIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMV 361

Query: 248 SDSPPLVDEFNEWKWEVEKGNGRMPTRQEVLDKK--AEXXXXXXYSAATVKQMLLEKKSA 75
           SDS P+ +EF +W  EV+   GRMP++Q+VL+KK   +      YSAATVKQML EKKSA
Sbjct: 362 SDSAPMEEEFKQWVKEVDCSGGRMPSKQDVLEKKQAIQKAITFVYSAATVKQMLQEKKSA 421

Query: 74  SLRPVNIAAEKDRLRKEIEIAEAR 3
           S RP+N+AAEKDRLR+E+EIA+++
Sbjct: 422 STRPLNVAAEKDRLRRELEIAQSK 445


>ref|XP_006486980.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform
           X1 [Citrus sinensis] gi|568867309|ref|XP_006486981.1|
           PREDICTED: RNA polymerase-associated protein RTF1
           homolog isoform X2 [Citrus sinensis]
          Length = 643

 Score =  257 bits (656), Expect = 4e-66
 Identities = 138/264 (52%), Positives = 179/264 (67%), Gaps = 2/264 (0%)
 Frame = -3

Query: 788 RMRQQDPDGYRSRLRDLTXXXXXXXXXXXXXSPPRHRSIGMAASPPSDNSNEGESGGRID 609
           R++QQDP+ +R RLRD +               P  R     A   S + +E ES    D
Sbjct: 181 RLKQQDPEAHR-RLRDASRGGSGSRVLS-----PVKRKAFTPAGLSSSSQSESESRSHSD 234

Query: 608 SEXXXXXXXXXXXXXXXDLSPSRLDAPKFEDVKEITIRRSKLVKWFMEPFFEELIAGCFV 429
            E                    R   P ++D+KEITIRRSKL KWFMEPFFEELI GCFV
Sbjct: 235 DEGSTGDGGMADSDDDGAPGSGR---PTYDDIKEITIRRSKLAKWFMEPFFEELIVGCFV 291

Query: 428 RLGIGKTRSGKPKYKLCLVRNVDATDPEKHYKLEHYTTYKWLNCIWGSDASAARWQMAMV 249
           R+GIG++++G P Y+LC+VRNVDAT+P++ YKLE+ TT K+LN  WG+++SAARWQMAMV
Sbjct: 292 RVGIGRSKNG-PIYRLCMVRNVDATEPDRSYKLENRTTCKYLNVTWGNESSAARWQMAMV 350

Query: 248 SDSPPLVDEFNEWKWEVEKGNGRMPTRQEVLDKK--AEXXXXXXYSAATVKQMLLEKKSA 75
           SDSPPL +EF +W  EVE+ +GRMP++Q+VL+KK   +      YSAATVKQML EKKSA
Sbjct: 351 SDSPPLEEEFKQWLREVERNSGRMPSKQDVLEKKDSIQKINTFVYSAATVKQMLQEKKSA 410

Query: 74  SLRPVNIAAEKDRLRKEIEIAEAR 3
           S RP+N+AAEKDRLR+E+E+A++R
Sbjct: 411 SSRPLNVAAEKDRLRRELEVAQSR 434