BLASTX nr result
ID: Zingiber23_contig00020027
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00020027
(765 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III s... 350 3e-94
ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g... 348 1e-93
gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japo... 343 4e-92
ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III s... 336 4e-90
ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [S... 333 4e-89
tpg|DAA37181.1| TPA: putative DNA-directed RNA polymerase family... 332 8e-89
ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III s... 321 1e-85
ref|XP_003570766.1| PREDICTED: DNA-directed RNA polymerase III s... 301 2e-79
emb|CBI16226.3| unnamed protein product [Vitis vinifera] 267 3e-69
ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s... 267 3e-69
gb|EOY20721.1| DNA-directed RNA polymerase [Theobroma cacao] 254 2e-65
ref|XP_002300065.1| DNA-directed RNA polymerase family protein [... 248 1e-63
ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III s... 248 2e-63
gb|ESW04135.1| hypothetical protein PHAVU_011G070100g [Phaseolus... 245 1e-62
ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III s... 241 2e-61
ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [A... 241 3e-61
ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III s... 239 1e-60
ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III s... 239 1e-60
ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citr... 238 2e-60
ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III s... 238 2e-60
>ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Oryza
brachyantha]
Length = 1389
Score = 350 bits (898), Expect = 3e-94
Identities = 166/247 (67%), Positives = 197/247 (79%), Gaps = 1/247 (0%)
Frame = -2
Query: 740 MARREEKLRCTKELYNEDMGPRRIQSIRFSVLSGEEIKNSSEVQVWNNRIYGADLRPVQN 561
MAR EEKLRCTKE + ED G RRI+SIRFS+ SG E++ S+EVQVWN+RIY ++RPV N
Sbjct: 1 MARPEEKLRCTKEPFIEDAGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNQEMRPVPN 60
Query: 560 GLLDPRMGAANKAGVCTTCHGNFSECPGHFGYLKLTLPVFNVGYFNSILNILKCICKACS 381
GLLD RMGAANK G C+TCHG+F+ECPGHFGYLKL LPVFNVG+FN IL++LKCICK CS
Sbjct: 61 GLLDTRMGAANKLGECSTCHGSFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKGCS 120
Query: 380 RILLVEDDRKTYLKKMRNPKADVAMKNALMTKIRDRCKLSICPWCGSKNGVVKKTKSSLA 201
R+LLVE DR +LKKMRNPKAD K+A+M K+RD+CKLS CPWCG NGV KK ++ L
Sbjct: 121 RVLLVEKDRLEFLKKMRNPKADPLQKSAIMKKVRDKCKLSRCPWCGFINGVAKKGRAGLI 180
Query: 200 IAHDFSRTIDGSKDEVIAAMSHISSK-SLHIAHLLSPIIVLSLFKKMLDEDCELLNMSDR 24
I HD S+T+DGS +E+ A+SH K S H+L P VLSLFK+M DEDCELLN+ DR
Sbjct: 181 ILHDCSKTLDGSTEELKEALSHKKEKLSFSAVHMLDPATVLSLFKRMTDEDCELLNLGDR 240
Query: 23 PEKFIVT 3
PEK IVT
Sbjct: 241 PEKLIVT 247
>ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa
Japonica Group] gi|38347455|emb|CAD41360.2|
OSJNBa0076N16.24 [Oryza sativa Japonica Group]
gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa
Japonica Group] gi|116310339|emb|CAH67354.1|
OSIGBa0130B08.14 [Oryza sativa Indica Group]
gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa
Indica Group] gi|215768005|dbj|BAH00234.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|218195112|gb|EEC77539.1| hypothetical protein
OsI_16437 [Oryza sativa Indica Group]
Length = 1383
Score = 348 bits (892), Expect = 1e-93
Identities = 164/247 (66%), Positives = 200/247 (80%), Gaps = 1/247 (0%)
Frame = -2
Query: 740 MARREEKLRCTKELYNEDMGPRRIQSIRFSVLSGEEIKNSSEVQVWNNRIYGADLRPVQN 561
MAR EEKLRCTKE + ED+G RRI+SIRFS+ SG E++ S+EVQVWN+RIY +++PV N
Sbjct: 1 MARPEEKLRCTKEPFIEDVGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNHEMKPVPN 60
Query: 560 GLLDPRMGAANKAGVCTTCHGNFSECPGHFGYLKLTLPVFNVGYFNSILNILKCICKACS 381
GLLD RMGAANK G C+TCHG+F+ECPGHFGYLKL LPVFNVG+FN IL++LKCICK+CS
Sbjct: 61 GLLDTRMGAANKLGECSTCHGSFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCS 120
Query: 380 RILLVEDDRKTYLKKMRNPKADVAMKNALMTKIRDRCKLSICPWCGSKNGVVKKTKSSLA 201
R+LL+E DR +LKKMRNPKAD K+A+M K+RD+CKLS CPWCG NGV KK ++ L
Sbjct: 121 RVLLMEKDRLEFLKKMRNPKADPLQKSAIMKKVRDKCKLSRCPWCGFINGVAKKGRAGLI 180
Query: 200 IAHDFSRTIDGSKDEVIAAMSHISSK-SLHIAHLLSPIIVLSLFKKMLDEDCELLNMSDR 24
I HD S+T+DGS +E+ A+SH K S+ +L P IVLSLFK+M DEDCELLN+ DR
Sbjct: 181 ILHDCSKTLDGSTEELRDALSHKKEKLSISAVRMLDPAIVLSLFKRMTDEDCELLNLGDR 240
Query: 23 PEKFIVT 3
PEK IVT
Sbjct: 241 PEKLIVT 247
>gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japonica Group]
Length = 1321
Score = 343 bits (880), Expect = 4e-92
Identities = 164/248 (66%), Positives = 200/248 (80%), Gaps = 2/248 (0%)
Frame = -2
Query: 740 MARREEKLRCTKELYNEDMGPRRIQSIRFSVLSGEEIKNSSEVQVWNNRIYGADLRPVQN 561
MAR EEKLRCTKE + ED+G RRI+SIRFS+ SG E++ S+EVQVWN+RIY +++PV N
Sbjct: 1 MARPEEKLRCTKEPFIEDVGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNHEMKPVPN 60
Query: 560 GLLDPRMGAANKAGVCTTCHGNFSECPGHFGYLKLTLPVFNVGYFNSILNILKCICKACS 381
GLLD RMGAANK G C+TCHG+F+ECPGHFGYLKL LPVFNVG+FN IL++LKCICK+CS
Sbjct: 61 GLLDTRMGAANKLGECSTCHGSFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCS 120
Query: 380 RILLVEDDRKTYLKKMRNPKADVAMKNALMTKIRDRCKLSICPWCGSKNG-VVKKTKSSL 204
R+LL+E DR +LKKMRNPKAD K+A+M K+RD+CKLS CPWCG NG V KK ++ L
Sbjct: 121 RVLLMEKDRLEFLKKMRNPKADPLQKSAIMKKVRDKCKLSRCPWCGFINGSVAKKGRAGL 180
Query: 203 AIAHDFSRTIDGSKDEVIAAMSHISSK-SLHIAHLLSPIIVLSLFKKMLDEDCELLNMSD 27
I HD S+T+DGS +E+ A+SH K S+ +L P IVLSLFK+M DEDCELLN+ D
Sbjct: 181 IILHDCSKTLDGSTEELRDALSHKKEKLSISAVRMLDPAIVLSLFKRMTDEDCELLNLGD 240
Query: 26 RPEKFIVT 3
RPEK IVT
Sbjct: 241 RPEKLIVT 248
>ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Brachypodium distachyon]
Length = 1392
Score = 336 bits (862), Expect = 4e-90
Identities = 161/247 (65%), Positives = 195/247 (78%), Gaps = 1/247 (0%)
Frame = -2
Query: 740 MARREEKLRCTKELYNEDMGPRRIQSIRFSVLSGEEIKNSSEVQVWNNRIYGADLRPVQN 561
MAR EEKLRCTKE + ED+G RRI+S+RFS+ SG+EI+ S+E QVWNNRIYG D++PV N
Sbjct: 1 MARPEEKLRCTKEPFVEDVGTRRIKSMRFSMFSGKEIRQSAETQVWNNRIYGNDMKPVPN 60
Query: 560 GLLDPRMGAANKAGVCTTCHGNFSECPGHFGYLKLTLPVFNVGYFNSILNILKCICKACS 381
GLLDPRMGAANK G C TCHG++ ECPGHFGYLKL LPVFNVG+FN+IL++LK ICK CS
Sbjct: 61 GLLDPRMGAANKFGECATCHGSYHECPGHFGYLKLVLPVFNVGFFNNILDVLKSICKGCS 120
Query: 380 RILLVEDDRKTYLKKMRNPKADVAMKNALMTKIRDRCKLSICPWCGSKNGVVKKTKSSLA 201
RILL E D++ +LKKMRNP+ + K ALM K+RD+CKLS CP CG NGV KK + L
Sbjct: 121 RILLHEKDQREFLKKMRNPRLEPLHKAALMKKVRDKCKLSRCPSCGYINGVAKKGRPGLL 180
Query: 200 IAHDFSRTIDGSKDEVIAAMSHISSK-SLHIAHLLSPIIVLSLFKKMLDEDCELLNMSDR 24
I HD S+T+DGS +E+ +A+SH K S+ H L P VLSLFK+M DEDCELLN+ DR
Sbjct: 181 IVHDCSKTLDGSTEELRSALSHKKEKLSISSVHTLDPATVLSLFKRMTDEDCELLNLGDR 240
Query: 23 PEKFIVT 3
PEK I+T
Sbjct: 241 PEKLIIT 247
>ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
gi|241937900|gb|EES11045.1| hypothetical protein
SORBIDRAFT_06g021120 [Sorghum bicolor]
Length = 1391
Score = 333 bits (854), Expect = 4e-89
Identities = 157/247 (63%), Positives = 194/247 (78%), Gaps = 1/247 (0%)
Frame = -2
Query: 740 MARREEKLRCTKELYNEDMGPRRIQSIRFSVLSGEEIKNSSEVQVWNNRIYGADLRPVQN 561
MA+ EEKLRCTKE + ED+G RRI+SIRFSVLSG EI+ S+EVQVWNNRIYG D++PV N
Sbjct: 1 MAKPEEKLRCTKEPFIEDVGTRRIKSIRFSVLSGSEIRKSAEVQVWNNRIYGHDMKPVPN 60
Query: 560 GLLDPRMGAANKAGVCTTCHGNFSECPGHFGYLKLTLPVFNVGYFNSILNILKCICKACS 381
GLLDPRMG NK C+TCHG FS+CPGHFGYLKL LPVFNVG+FN IL++LKCICK+CS
Sbjct: 61 GLLDPRMGVPNKREKCSTCHGEFSDCPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCS 120
Query: 380 RILLVEDDRKTYLKKMRNPKADVAMKNALMTKIRDRCKLSICPWCGSKNGVVKKTKSSLA 201
R+LL E DR+ +LKKMRNP+AD K+A M K+RD+CKLS CP C +NGVVKK ++ L
Sbjct: 121 RVLLFEKDRREFLKKMRNPRADALQKSATMKKVRDKCKLSCCPRCDYRNGVVKKGRAGLI 180
Query: 200 IAHDFSRTIDGSKDEVIAAMSHISSK-SLHIAHLLSPIIVLSLFKKMLDEDCELLNMSDR 24
+ HD S+ +DG +E+ A+ + K S + +L P VLSLF++M DEDCELLN+ DR
Sbjct: 181 VVHDCSKVLDGHTEELKNALQNKKEKVSANSVRVLDPATVLSLFRRMTDEDCELLNLGDR 240
Query: 23 PEKFIVT 3
PEK IV+
Sbjct: 241 PEKLIVS 247
>tpg|DAA37181.1| TPA: putative DNA-directed RNA polymerase family protein [Zea mays]
Length = 1030
Score = 332 bits (851), Expect = 8e-89
Identities = 157/247 (63%), Positives = 192/247 (77%), Gaps = 1/247 (0%)
Frame = -2
Query: 740 MARREEKLRCTKELYNEDMGPRRIQSIRFSVLSGEEIKNSSEVQVWNNRIYGADLRPVQN 561
MA+ EEKLRCTKE + ED+G RRI+SIRFSVLSG EI+ S+EVQVWNNRIY D+ PV N
Sbjct: 1 MAKPEEKLRCTKEPFIEDVGTRRIKSIRFSVLSGSEIRKSAEVQVWNNRIYDRDMTPVPN 60
Query: 560 GLLDPRMGAANKAGVCTTCHGNFSECPGHFGYLKLTLPVFNVGYFNSILNILKCICKACS 381
GLLDPRMG K G C TCHG FS+CPGHFGYLKL LPVFNVG+FN IL++LKCICK+CS
Sbjct: 61 GLLDPRMGIPTKRGKCNTCHGEFSDCPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCS 120
Query: 380 RILLVEDDRKTYLKKMRNPKADVAMKNALMTKIRDRCKLSICPWCGSKNGVVKKTKSSLA 201
R+LL+E DR+ +LKKMRNP+AD K+A M K+RD+CKLS CP C +NGVVKK ++ L
Sbjct: 121 RVLLIEKDRREFLKKMRNPRADALQKSATMKKVRDKCKLSCCPRCDYRNGVVKKGRAGLI 180
Query: 200 IAHDFSRTIDGSKDEVIAAMSHISSK-SLHIAHLLSPIIVLSLFKKMLDEDCELLNMSDR 24
+ HD S+ +DG +E+ A+ + K S +L P VLSLF++M+DEDCELLN+ DR
Sbjct: 181 VVHDCSKVLDGHTEELKNALQNKKEKVSASSVLVLDPATVLSLFRRMIDEDCELLNLGDR 240
Query: 23 PEKFIVT 3
PEK IVT
Sbjct: 241 PEKLIVT 247
>ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Setaria italica]
Length = 1397
Score = 321 bits (823), Expect = 1e-85
Identities = 155/250 (62%), Positives = 191/250 (76%), Gaps = 4/250 (1%)
Frame = -2
Query: 740 MARREEKLRCTKELYNEDMGPRRIQSIRFSVLSGEEIKNSSEVQVWNNRIYGADLRPVQN 561
MA+ EEKLRCTKE + ED+G RRI+SIRFSVLSG EI+ S+EVQVWN+RIY D++PV N
Sbjct: 1 MAKPEEKLRCTKEPFIEDVGARRIKSIRFSVLSGSEIRKSAEVQVWNSRIYEHDMKPVPN 60
Query: 560 GLLDPRMGAANKAGV---CTTCHGNFSECPGHFGYLKLTLPVFNVGYFNSILNILKCICK 390
GLLD RMG A+K C+TCHG F+ECPGHFGYLKL LPVFNVG+FN IL++LKCICK
Sbjct: 61 GLLDMRMGLASKKDTELKCSTCHGPFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICK 120
Query: 389 ACSRILLVEDDRKTYLKKMRNPKADVAMKNALMTKIRDRCKLSICPWCGSKNGVVKKTKS 210
CSR+LL E DR+ +LKKMRNP+AD K+A+M K+RD+CKL+ CP C KNGVVKK +
Sbjct: 121 GCSRVLLAEKDRREFLKKMRNPRADALQKSAIMKKVRDKCKLTCCPRCEYKNGVVKKGRV 180
Query: 209 SLAIAHDFSRTIDGSKDEVIAAMSHISSK-SLHIAHLLSPIIVLSLFKKMLDEDCELLNM 33
L + HD S+ +DG +E+ A+ H K S +L P LSLF++M+DEDCELLN+
Sbjct: 181 GLIVIHDCSKILDGHTEELKNALQHKKEKVSTSSVRMLDPATALSLFRRMVDEDCELLNL 240
Query: 32 SDRPEKFIVT 3
DRPEK IVT
Sbjct: 241 GDRPEKLIVT 250
>ref|XP_003570766.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Brachypodium distachyon]
Length = 1400
Score = 301 bits (771), Expect = 2e-79
Identities = 142/254 (55%), Positives = 188/254 (74%), Gaps = 6/254 (2%)
Frame = -2
Query: 746 SAMARREEKLRCTKELYNEDMGPRRIQSIRFSVLSGEEIKNSSEVQVWNNRIYGADLRPV 567
+A R EEKLRCTKE + +D P+RI+S+RF LSG+EI+ S+ QVWN RIY + L+PV
Sbjct: 2 AAQWRPEEKLRCTKEPFVDDASPQRIKSMRFCTLSGKEIRQSAAAQVWNTRIYDSSLKPV 61
Query: 566 QNGLLDPRMGAANKAGVCTTCHGNFSECPGHFGYLKLTLPVFNVGYFNSILNILKCICKA 387
NGLLDPRMGA++K G C TCHG+++ECPGHFGY+KL LPVFNVGYFN IL +LKCICK
Sbjct: 62 PNGLLDPRMGASDKCGECATCHGSYTECPGHFGYIKLALPVFNVGYFNKILAVLKCICKG 121
Query: 386 CSRILLVEDDRKTYLKKMRNPKADVAMKNALMTKIRDRCKLSICPWCGSKNGVVKK---- 219
CSR+LL E+ + +LKKMRNP+AD ++++M K+RD+C+ S C WCG NG+VKK
Sbjct: 122 CSRVLLTENIHQEFLKKMRNPRAD---RSSIMIKVRDKCRPSRCSWCGYINGIVKKEGRR 178
Query: 218 -TKSSLAIAHDFSRTIDGSKDEVIAAMSHISSK-SLHIAHLLSPIIVLSLFKKMLDEDCE 45
K ++ I HD S+ +D S +EV + +SH K S+ H L P+ VLSLF+++ DEDCE
Sbjct: 179 ALKQTVVIVHDCSKNLDASTEEVRSVLSHKKEKLSITSVHTLDPVTVLSLFRRITDEDCE 238
Query: 44 LLNMSDRPEKFIVT 3
LL + +RPE I+T
Sbjct: 239 LLAIGERPENLIIT 252
>emb|CBI16226.3| unnamed protein product [Vitis vinifera]
Length = 1819
Score = 267 bits (682), Expect = 3e-69
Identities = 132/251 (52%), Positives = 175/251 (69%), Gaps = 9/251 (3%)
Frame = -2
Query: 728 EEKLRCTKELYNEDMGPRRIQSIRFSVLSGEEIKNSSEVQVWNNRIYGADLRPVQNGLLD 549
++ ++ TKE Y ED+GPR+I+SIRF++ S EI ++EVQVW Y A+ +P++NGLLD
Sbjct: 2 KDGIQFTKEPYIEDVGPRKIESIRFALFSESEISKAAEVQVWRGVYYDANRKPIENGLLD 61
Query: 548 PRMGAANKAGVCTTCHGNFSECPGHFGYLKLTLPVFNVGYFNSILNILKCICKACSRILL 369
PRMG ANK G C TC GNF +CPGH GYL L LPV+NVGY ++I++ILKCICK+CSR+LL
Sbjct: 62 PRMGPANKNGTCATCLGNFRDCPGHCGYLTLALPVYNVGYLSTIVDILKCICKSCSRVLL 121
Query: 368 VEDDRKTYLKKMRNPKADVAMKNALMTKIRDRC-------KLSICPWCGSKNGVVKKTKS 210
E K YLKKMR+ K + K LM KI +C K C CG NG+VKK S
Sbjct: 122 DEKASKDYLKKMRSQKMEALKKAELMKKIVQKCTAMASSKKAVKCSRCGYMNGIVKKAVS 181
Query: 209 SLAIAHDFSRTIDGSKDEVIAAMSHI--SSKSLHIAHLLSPIIVLSLFKKMLDEDCELLN 36
L I HD S+ DGS +E +A+SH S S + +L+P+ VLSLFK+M+DEDC+LLN
Sbjct: 182 VLGIIHDRSKIADGSLEECSSAISHTKESKASFSVVDILNPVKVLSLFKRMMDEDCDLLN 241
Query: 35 MSDRPEKFIVT 3
+++RPEK ++T
Sbjct: 242 LAERPEKLVLT 252
>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
vinifera]
Length = 1383
Score = 267 bits (682), Expect = 3e-69
Identities = 132/251 (52%), Positives = 175/251 (69%), Gaps = 9/251 (3%)
Frame = -2
Query: 728 EEKLRCTKELYNEDMGPRRIQSIRFSVLSGEEIKNSSEVQVWNNRIYGADLRPVQNGLLD 549
++ ++ TKE Y ED+GPR+I+SIRF++ S EI ++EVQVW Y A+ +P++NGLLD
Sbjct: 2 KDGIQFTKEPYIEDVGPRKIESIRFALFSESEISKAAEVQVWRGVYYDANRKPIENGLLD 61
Query: 548 PRMGAANKAGVCTTCHGNFSECPGHFGYLKLTLPVFNVGYFNSILNILKCICKACSRILL 369
PRMG ANK G C TC GNF +CPGH GYL L LPV+NVGY ++I++ILKCICK+CSR+LL
Sbjct: 62 PRMGPANKNGTCATCLGNFRDCPGHCGYLTLALPVYNVGYLSTIVDILKCICKSCSRVLL 121
Query: 368 VEDDRKTYLKKMRNPKADVAMKNALMTKIRDRC-------KLSICPWCGSKNGVVKKTKS 210
E K YLKKMR+ K + K LM KI +C K C CG NG+VKK S
Sbjct: 122 DEKASKDYLKKMRSQKMEALKKAELMKKIVQKCTAMASSKKAVKCSRCGYMNGIVKKAVS 181
Query: 209 SLAIAHDFSRTIDGSKDEVIAAMSHI--SSKSLHIAHLLSPIIVLSLFKKMLDEDCELLN 36
L I HD S+ DGS +E +A+SH S S + +L+P+ VLSLFK+M+DEDC+LLN
Sbjct: 182 VLGIIHDRSKIADGSLEECSSAISHTKESKASFSVVDILNPVKVLSLFKRMMDEDCDLLN 241
Query: 35 MSDRPEKFIVT 3
+++RPEK ++T
Sbjct: 242 LAERPEKLVLT 252
>gb|EOY20721.1| DNA-directed RNA polymerase [Theobroma cacao]
Length = 1395
Score = 254 bits (650), Expect = 2e-65
Identities = 132/245 (53%), Positives = 170/245 (69%), Gaps = 9/245 (3%)
Frame = -2
Query: 710 TKELYNEDMGPRRIQSIRFSVLSGEEIKNSSEVQVWNNRIYGADLRPVQNGLLDPRMGAA 531
TK Y ED+GPR+I+SI+FS+LS EI ++EVQV+ Y RP++ GLLDPRMG A
Sbjct: 6 TKRPYIEDVGPRKIKSIQFSMLSDSEIAKAAEVQVYQALYYDPKSRPIEGGLLDPRMGPA 65
Query: 530 NKAGVCTTCHGNFSECPGHFGYLKLTLPVFNVGYFNSILNILKCICKACSRILLVEDDRK 351
NK+G C TCHGNF++CPGH+GYL L LPV+NVGY ++IL+ILKCICK+CSRI+L E K
Sbjct: 66 NKSGKCATCHGNFADCPGHYGYLSLALPVYNVGYLSTILDILKCICKSCSRIILDEKLCK 125
Query: 350 TYLKKMRNPKADVAMKNALMTKIRDRC------KLSICPWCGSKNGVVKKTKSSLAIAHD 189
YLK+MR+PK D K +M I +C K C CG NG VKK + L I HD
Sbjct: 126 DYLKRMRSPKIDALKKGDIMKSIVKKCSAMASSKAVKCWRCGYVNGTVKKAVAMLGIIHD 185
Query: 188 FSRTIDGSKDEVIAAMSHI--SSKSLHIA-HLLSPIIVLSLFKKMLDEDCELLNMSDRPE 18
S+ D S +E +A+SH S S ++A ++L+P+ VLSLFK+M D DCELL +SDRPE
Sbjct: 186 RSKINDNSLEEFRSAISHTKESKASFNVATYVLNPVKVLSLFKRMTDLDCELLYLSDRPE 245
Query: 17 KFIVT 3
K I+T
Sbjct: 246 KLIIT 250
>ref|XP_002300065.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
gi|222847323|gb|EEE84870.1| DNA-directed RNA polymerase
family protein [Populus trichocarpa]
Length = 1394
Score = 248 bits (634), Expect = 1e-63
Identities = 127/255 (49%), Positives = 173/255 (67%), Gaps = 9/255 (3%)
Frame = -2
Query: 740 MARREEKLRCTKELYNEDMGPRRIQSIRFSVLSGEEIKNSSEVQVWNNRIYGADLRPVQN 561
M +R + + TK+ Y ED+GPRRI+SI+FS +SG +I +SE QV + Y A+ + +
Sbjct: 1 MQQRAQDIIYTKQPYIEDVGPRRIKSIQFSTMSGSDILKASECQVHLGQYYDANKKAIVG 60
Query: 560 GLLDPRMGAANKAGVCTTCHGNFSECPGHFGYLKLTLPVFNVGYFNSILNILKCICKACS 381
GLLD RMGA NK G C TC G+F++CPGHFGYL L LPV+NVGY ++IL+ILKCICK+CS
Sbjct: 61 GLLDTRMGAPNKHGTCQTCGGSFTDCPGHFGYLNLVLPVYNVGYLSTILDILKCICKSCS 120
Query: 380 RILLVEDDRKTYLKKMRNPKADVAMKNALMTKIRDRC------KLSICPWCGSKNGVVKK 219
R+L+ E RK+YLK+MRNP+ + KN LM +I +C K C CG NG+VKK
Sbjct: 121 RVLVDEKLRKSYLKRMRNPRTEPLKKNELMKEIVKKCSSMASSKAVKCLRCGYMNGMVKK 180
Query: 218 TKSSLAIAHDFSRTIDGSKDEVIAAMSHISSKSLHI---AHLLSPIIVLSLFKKMLDEDC 48
S + I HD S+ IDG +E +A+ H I ++L+P+ VLSLF++M++EDC
Sbjct: 181 AGSVVGIIHDRSKLIDGYLEECKSAIGHTREARAPIGLATYILNPVRVLSLFQRMVEEDC 240
Query: 47 ELLNMSDRPEKFIVT 3
ELL + RPEK I+T
Sbjct: 241 ELLYLQGRPEKLIIT 255
>ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
isoform X1 [Citrus sinensis]
gi|568870034|ref|XP_006488217.1| PREDICTED: DNA-directed
RNA polymerase III subunit rpc1-like isoform X2 [Citrus
sinensis]
Length = 1404
Score = 248 bits (633), Expect = 2e-63
Identities = 126/258 (48%), Positives = 176/258 (68%), Gaps = 8/258 (3%)
Frame = -2
Query: 752 LNSAMARREEKLRCTKELYNEDMGPRRIQSIRFSVLSGEEIKNSSEVQVWNNRIYGADLR 573
+ + ++ + + TK+ Y ED+GPR+I+SI+FS++S EI ++EVQV+ + Y ++
Sbjct: 1 MTQQLQQKSQSIAFTKQPYIEDVGPRKIESIQFSMMSDSEIMKAAEVQVYKGQYYSSNRV 60
Query: 572 PVQNGLLDPRMGAANKAGVCTTCHGNFSECPGHFGYLKLTLPVFNVGYFNSILNILKCIC 393
P++ GLLDPRMG ANK+ C TCHG FS CPGH+GYL L LPV+NVGY ++IL+ILKCIC
Sbjct: 61 PIEGGLLDPRMGPANKSCTCATCHGGFSNCPGHYGYLTLALPVYNVGYLSTILDILKCIC 120
Query: 392 KACSRILLVEDDRKTYLKKMRNPKADVAMKNALMTKIRDRC-----KLSICPWCGSKNGV 228
K CSR+LL E K YLKKMRNPK + K LM I +C K CP CG NG+
Sbjct: 121 KYCSRLLLEEKLCKDYLKKMRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGM 180
Query: 227 VKKTKSSLAIAHDFSRTIDGSKDEVIAAMSHI--SSKSLHIA-HLLSPIIVLSLFKKMLD 57
VKK + L I HD S+ + S E +A++H S ++++A ++L+P+ VL LFK+M D
Sbjct: 181 VKKAVAVLGIIHDRSKVTE-SLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTD 239
Query: 56 EDCELLNMSDRPEKFIVT 3
DCE+L +S+RPEK I+T
Sbjct: 240 TDCEVLYLSERPEKLIIT 257
>gb|ESW04135.1| hypothetical protein PHAVU_011G070100g [Phaseolus vulgaris]
Length = 1392
Score = 245 bits (625), Expect = 1e-62
Identities = 128/248 (51%), Positives = 168/248 (67%), Gaps = 5/248 (2%)
Frame = -2
Query: 731 REEKLRCTKELYNEDMGPRRIQSIRFSVLSGEEIKNSSEVQVWNNRIYGADLRPVQNGLL 552
R E + TKE + ED GPR+I++++FS+LS EI EVQVW Y + +P+ GLL
Sbjct: 5 RTEGITFTKEPFMEDAGPRKIKNMKFSMLSDSEISKLGEVQVWKGSYYDSFKKPIHGGLL 64
Query: 551 DPRMGAANKAGVCTTCHGNFSECPGHFGYLKLTLPVFNVGYFNSILNILKCICKACSRIL 372
DPRMG ANK+ C TCHGNF +CPGH+GYL L LPVFNVGY SI+ ILKCICK C+RIL
Sbjct: 65 DPRMGPANKSLGCATCHGNFHDCPGHYGYLNLALPVFNVGYLGSIVEILKCICKGCARIL 124
Query: 371 LVEDDRKTYLKKMRNPKADV--AMKNALMTKIRDRCKLSICPWCGSKNGVVKKTKSSLAI 198
L ED RK +LKKMR+ K M + I+D K+ CP CG NG VKK +SL I
Sbjct: 125 LDEDTRKKHLKKMRSSKKSELDKMDFVKVRIIKDCSKVVNCPRCGYINGSVKKLPASLII 184
Query: 197 AHDFSRTIDGSKDEVIAAMSHI--SSKSLHIAH-LLSPIIVLSLFKKMLDEDCELLNMSD 27
HD S+ + +E+ + +S I S + ++++ +L+P VLSLF+KMLDEDCELL +++
Sbjct: 185 MHDCSKCKNNIVEELESTLSRIKDSKATANVSNRILNPFQVLSLFRKMLDEDCELLYVAE 244
Query: 26 RPEKFIVT 3
RPEK I+T
Sbjct: 245 RPEKLIIT 252
>ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Glycine max]
Length = 1391
Score = 241 bits (615), Expect = 2e-61
Identities = 127/248 (51%), Positives = 170/248 (68%), Gaps = 5/248 (2%)
Frame = -2
Query: 731 REEKLRCTKELYNEDMGPRRIQSIRFSVLSGEEIKNSSEVQVWNNRIYGADLRPVQNGLL 552
R E + TKE + ED GPR+I++++FS LS EI +EVQVW Y + +P+ GLL
Sbjct: 5 RTEGITFTKEPFMEDTGPRKIKNMKFSTLSESEISKIAEVQVWKGSYYDSFKKPIHGGLL 64
Query: 551 DPRMGAANKAGVCTTCHGNFSECPGHFGYLKLTLPVFNVGYFNSILNILKCICKACSRIL 372
DPRMG ANK+ VC TC GNF +CPGH+GYL L LPVFNVGY ++I+ ILKCICK C+RIL
Sbjct: 65 DPRMGPANKSLVCATCDGNFHDCPGHYGYLNLALPVFNVGYLSTIVEILKCICKGCARIL 124
Query: 371 LVEDDRKTYLKKMRNPKADVAMK--NALMTKIRDRCKLSICPWCGSKNGVVKKTKSSLAI 198
L ED RK +LKKMR+ K K + I+D K+ CP CG NG VKK +SL I
Sbjct: 125 LDEDTRKKHLKKMRSSKKSELDKIDFVKVRVIKDCSKVVNCPRCGYINGSVKKLPASLTI 184
Query: 197 AHDFSRTIDGSKDEVIAAMSHI--SSKSLHIAH-LLSPIIVLSLFKKMLDEDCELLNMSD 27
HD S+ + +E+ +A+S + S + ++++ +L+P VLSLFK+MLDEDCELL +++
Sbjct: 185 IHDCSKCRNYIVEELDSALSRMKDSRATTNVSNRILNPFQVLSLFKRMLDEDCELLYVAE 244
Query: 26 RPEKFIVT 3
RPEK I+T
Sbjct: 245 RPEKLIMT 252
>ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [Amborella trichopoda]
gi|548832896|gb|ERM95665.1| hypothetical protein
AMTR_s00023p00196820 [Amborella trichopoda]
Length = 1383
Score = 241 bits (614), Expect = 3e-61
Identities = 120/251 (47%), Positives = 172/251 (68%), Gaps = 5/251 (1%)
Frame = -2
Query: 740 MARREEKLRCTKELYNEDMGPRRIQSIRFSVLSGEEIKNSSEVQVWNNRIYG-ADLRPVQ 564
M +E TK+ + ED+GPR+I+S++F +LSG EI ++E QV+ Y DL+P +
Sbjct: 1 MDSEKEAFNFTKKPFVEDIGPRKIKSVQFCMLSGPEIVKAAETQVYKRDYYNRTDLKPAE 60
Query: 563 NGLLDPRMGAANKAGVCTTCHGNFSECPGHFGYLKLTLPVFNVGYFNSILNILKCICKAC 384
+G+LD RMG + K+G C TC G+F CPGHFGYLKL LPVF+VGYF + + +L+CICK+C
Sbjct: 61 HGVLDTRMGFSTKSGSCATCFGDFQTCPGHFGYLKLALPVFHVGYFRTTIIVLQCICKSC 120
Query: 383 SRILLVEDDRKTYLKKMRNPKADVAMKNALMTKIRDRCK-LSICPWCGSKNGVVKKTKSS 207
+RILL E++RK +LKK+RNP+A++ KN + K+ D+CK + ICP CG NGVVKK +
Sbjct: 121 ARILLFEEERKQFLKKIRNPRAELHQKNDFVKKVIDKCKRVRICPRCGDYNGVVKKAGPT 180
Query: 206 LAIAHDFSR-TIDGSKDEVIAAMSH--ISSKSLHIAHLLSPIIVLSLFKKMLDEDCELLN 36
I+HD S+ D E A+S S+ ++ L+P L+LF++M+DEDC+LL
Sbjct: 181 FRISHDRSKANYDKLTKECKTAISQTKYSNSDFNMVENLTPQRALALFERMVDEDCDLLY 240
Query: 35 MSDRPEKFIVT 3
+ DRPEK I+T
Sbjct: 241 LYDRPEKLIIT 251
>ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
isoform X2 [Solanum tuberosum]
Length = 1243
Score = 239 bits (609), Expect = 1e-60
Identities = 127/255 (49%), Positives = 165/255 (64%), Gaps = 9/255 (3%)
Frame = -2
Query: 740 MARREEKLRCTKELYNEDMGPRRIQSIRFSVLSGEEIKNSSEVQVWNNRIYGADLRPVQN 561
M R + L+ TK+ Y ED+GPR+I+SI+FS+ S EI S+EV+V+ Y + +P+QN
Sbjct: 1 MKRIQNSLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKSAEVEVYLGLYYESTKKPIQN 60
Query: 560 GLLDPRMGAANKAGVCTTCHGNFSECPGHFGYLKLTLPVFNVGYFNSILNILKCICKACS 381
GLLDPRMG NK G C TCHGNF ECPGH+GYL L LPV+NVGY ++++ILKCICK CS
Sbjct: 61 GLLDPRMGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDILKCICKCCS 120
Query: 380 RILLVEDDRKTYLKKMRNPKADVAMKNALMTKIRDRC-------KLSICPWCGSKNGVVK 222
ILL + +R+ LKKMRNP+ + K+ L K+ RC K + C CG NG+VK
Sbjct: 121 SILLDDKERRDILKKMRNPRTEFLKKSELHKKVVKRCNAMAGGQKTATCSKCGYMNGMVK 180
Query: 221 KTKSSLAIAHDFSRTIDGSKDEVIAAMSHISS--KSLHIAHLLSPIIVLSLFKKMLDEDC 48
K + L I H+ I DE+ A+S S+ + L P +V SLFK M DEDC
Sbjct: 181 KLQ--LKITHEQGNRI---LDEINVAISDKRELRASVSVPPELDPKVVYSLFKNMSDEDC 235
Query: 47 ELLNMSDRPEKFIVT 3
ELL +SDRPEK +VT
Sbjct: 236 ELLYLSDRPEKLLVT 250
>ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
isoform X1 [Solanum tuberosum]
Length = 1394
Score = 239 bits (609), Expect = 1e-60
Identities = 127/255 (49%), Positives = 165/255 (64%), Gaps = 9/255 (3%)
Frame = -2
Query: 740 MARREEKLRCTKELYNEDMGPRRIQSIRFSVLSGEEIKNSSEVQVWNNRIYGADLRPVQN 561
M R + L+ TK+ Y ED+GPR+I+SI+FS+ S EI S+EV+V+ Y + +P+QN
Sbjct: 1 MKRIQNSLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKSAEVEVYLGLYYESTKKPIQN 60
Query: 560 GLLDPRMGAANKAGVCTTCHGNFSECPGHFGYLKLTLPVFNVGYFNSILNILKCICKACS 381
GLLDPRMG NK G C TCHGNF ECPGH+GYL L LPV+NVGY ++++ILKCICK CS
Sbjct: 61 GLLDPRMGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDILKCICKCCS 120
Query: 380 RILLVEDDRKTYLKKMRNPKADVAMKNALMTKIRDRC-------KLSICPWCGSKNGVVK 222
ILL + +R+ LKKMRNP+ + K+ L K+ RC K + C CG NG+VK
Sbjct: 121 SILLDDKERRDILKKMRNPRTEFLKKSELHKKVVKRCNAMAGGQKTATCSKCGYMNGMVK 180
Query: 221 KTKSSLAIAHDFSRTIDGSKDEVIAAMSHISS--KSLHIAHLLSPIIVLSLFKKMLDEDC 48
K + L I H+ I DE+ A+S S+ + L P +V SLFK M DEDC
Sbjct: 181 KLQ--LKITHEQGNRI---LDEINVAISDKRELRASVSVPPELDPKVVYSLFKNMSDEDC 235
Query: 47 ELLNMSDRPEKFIVT 3
ELL +SDRPEK +VT
Sbjct: 236 ELLYLSDRPEKLLVT 250
>ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citrus clementina]
gi|557526635|gb|ESR37941.1| hypothetical protein
CICLE_v10027681mg [Citrus clementina]
Length = 1397
Score = 238 bits (607), Expect = 2e-60
Identities = 126/273 (46%), Positives = 176/273 (64%), Gaps = 23/273 (8%)
Frame = -2
Query: 752 LNSAMARREEKLRCTKELYNEDMGPRRIQSIRFSVLSGEEIKNSSEVQVWNNRIYGADLR 573
+ + ++ + + TK+ Y ED+GPR+I+SI+FS++S EI ++EVQV+ + Y ++
Sbjct: 1 MTQQLQQKSQSIAFTKQPYIEDVGPRKIESIQFSMMSDSEIMKAAEVQVYKGQYYSSNRV 60
Query: 572 PVQNGLLDPRM---------------GAANKAGVCTTCHGNFSECPGHFGYLKLTLPVFN 438
P++ GLLDPRM G ANK+ C TCHG FS CPGH+GYL L LPV+N
Sbjct: 61 PIEGGLLDPRMEKIIFLQRLFFHGFQGPANKSCTCATCHGGFSNCPGHYGYLTLALPVYN 120
Query: 437 VGYFNSILNILKCICKACSRILLVEDDRKTYLKKMRNPKADVAMKNALMTKIRDRC---- 270
VGY ++IL+ILKCICK CSR+LL E K YLKKMRNPK + K LM I +C
Sbjct: 121 VGYLSTILDILKCICKYCSRLLLEEKLCKDYLKKMRNPKMEALRKTDLMKSIVKKCSTMA 180
Query: 269 -KLSICPWCGSKNGVVKKTKSSLAIAHDFSRTIDGSKDEVIAAMSHI--SSKSLHIA-HL 102
K CP CG NG+VKK + L I HD S+ + S E +A++H S ++++A ++
Sbjct: 181 SKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE-SLQEFASAITHTKESKAAVNVATYI 239
Query: 101 LSPIIVLSLFKKMLDEDCELLNMSDRPEKFIVT 3
L+P+ VL LFK+M D DCE+L +S+RPEK I+T
Sbjct: 240 LNPVNVLFLFKRMTDTDCEVLYLSERPEKLIIT 272
>ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Solanum lycopersicum]
Length = 1390
Score = 238 bits (607), Expect = 2e-60
Identities = 125/255 (49%), Positives = 166/255 (65%), Gaps = 9/255 (3%)
Frame = -2
Query: 740 MARREEKLRCTKELYNEDMGPRRIQSIRFSVLSGEEIKNSSEVQVWNNRIYGADLRPVQN 561
M R +E L+ TK+ Y ED+GPR+I+SI+FS+ S EI +EV+V+ Y + +P+QN
Sbjct: 1 MNRAQESLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKLAEVEVYLGLYYESTKKPIQN 60
Query: 560 GLLDPRMGAANKAGVCTTCHGNFSECPGHFGYLKLTLPVFNVGYFNSILNILKCICKACS 381
GLLDPRMG NK+G C TCHGNF ECPGH+GYL L LPV+NVGY ++++ILKCICK CS
Sbjct: 61 GLLDPRMGPPNKSGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDILKCICKCCS 120
Query: 380 RILLVEDDRKTYLKKMRNPKADVAMKNALMTKIRDRC-------KLSICPWCGSKNGVVK 222
ILL + +R+ LKKMRNP+ + K+ L ++ RC K + C CG NG+VK
Sbjct: 121 SILLDDKERRDILKKMRNPRTEFLKKSELHKRVVKRCNAMAGGQKTATCSKCGYMNGMVK 180
Query: 221 KTKSSLAIAHDFSRTIDGSKDEVIAAMSHISS--KSLHIAHLLSPIIVLSLFKKMLDEDC 48
K + L I H+ I DE+ A+S S+ + + P +V SLFK M DEDC
Sbjct: 181 KLQ--LKITHEQGNRI---LDEINVAISDKRELRASVSVPPEIDPKVVYSLFKNMSDEDC 235
Query: 47 ELLNMSDRPEKFIVT 3
ELL +SDRPEK +VT
Sbjct: 236 ELLYLSDRPEKLLVT 250