BLASTX nr result

ID: Zingiber23_contig00016379 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00016379
         (606 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tpg|DAA49273.1| TPA: putative RING zinc finger domain superfamil...    60   4e-07
ref|XP_002466926.1| hypothetical protein SORBIDRAFT_01g016823 [S...    59   1e-06
ref|XP_004982574.1| PREDICTED: putative E3 ubiquitin-protein lig...    59   1e-06
ref|XP_004961623.1| PREDICTED: putative E3 ubiquitin-protein lig...    58   2e-06
ref|XP_002273941.2| PREDICTED: putative E3 ubiquitin-protein lig...    57   5e-06
emb|CBI30594.3| unnamed protein product [Vitis vinifera]               57   5e-06
ref|XP_006655452.1| PREDICTED: uncharacterized protein LOC102712...    56   9e-06
ref|XP_003566083.1| PREDICTED: uncharacterized protein LOC100846...    56   9e-06

>tpg|DAA49273.1| TPA: putative RING zinc finger domain superfamily protein [Zea
           mays]
          Length = 467

 Score = 60.5 bits (145), Expect = 4e-07
 Identities = 38/85 (44%), Positives = 49/85 (57%)
 Frame = -1

Query: 606 TMSIKHLCQFIALQTSTLLEGVEIYARKPRVETMSMRCARPEGEPSTDPSSAGLLRLEGE 427
           T+SIK LCQF+A QTS   E VE+YA KP        C++P    +  P  A   RL GE
Sbjct: 391 TLSIKQLCQFVASQTSHKDEEVEMYALKP-------SCSKPVSTNTCGPDKA---RLAGE 440

Query: 426 ESLTTLYASFTSDSRELVLVYRLKI 352
           E L+ L +SFT  +  L LVY +K+
Sbjct: 441 ERLSDLRSSFTFPNGVLELVYAIKV 465


>ref|XP_002466926.1| hypothetical protein SORBIDRAFT_01g016823 [Sorghum bicolor]
           gi|241920780|gb|EER93924.1| hypothetical protein
           SORBIDRAFT_01g016823 [Sorghum bicolor]
          Length = 143

 Score = 58.9 bits (141), Expect = 1e-06
 Identities = 37/85 (43%), Positives = 47/85 (55%)
 Frame = -1

Query: 606 TMSIKHLCQFIALQTSTLLEGVEIYARKPRVETMSMRCARPEGEPSTDPSSAGLLRLEGE 427
           T+SIK LCQF+A QTS   E VE+YA KP                ST+PS     RL GE
Sbjct: 67  TLSIKQLCQFVASQTSHKDEEVEMYALKPSY----------SNPVSTNPSGLDKARLAGE 116

Query: 426 ESLTTLYASFTSDSRELVLVYRLKI 352
           + L+ L +SFT  +  L LVY +K+
Sbjct: 117 QRLSDLRSSFTFPNGVLELVYAIKV 141


>ref|XP_004982574.1| PREDICTED: putative E3 ubiquitin-protein ligase RING1a-like
           [Setaria italica]
          Length = 464

 Score = 58.5 bits (140), Expect = 1e-06
 Identities = 38/85 (44%), Positives = 47/85 (55%)
 Frame = -1

Query: 606 TMSIKHLCQFIALQTSTLLEGVEIYARKPRVETMSMRCARPEGEPSTDPSSAGLLRLEGE 427
           T+SIK LCQF+A QTS   E VEIYA KP    +           ST+ S     RL GE
Sbjct: 388 TLSIKQLCQFVATQTSHKDEEVEIYALKPSYSDL----------VSTNTSGFDKARLVGE 437

Query: 426 ESLTTLYASFTSDSRELVLVYRLKI 352
           E L+ L +SFT  +  L LVY +K+
Sbjct: 438 ERLSDLRSSFTFPNGVLELVYAIKV 462


>ref|XP_004961623.1| PREDICTED: putative E3 ubiquitin-protein ligase RING1a-like
           [Setaria italica]
          Length = 493

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 36/86 (41%), Positives = 51/86 (59%)
 Frame = -1

Query: 606 TMSIKHLCQFIALQTSTLLEGVEIYARKPRVETMSMRCARPEGEPSTDPSSAGLLRLEGE 427
           T+S++HLCQF+ALQ S   + VEIY RK  ++         + E   D S+ GL RL  E
Sbjct: 406 TLSVQHLCQFVALQLSRQPKEVEIYIRKSSMDASLSANNTCKDEIKPDQSN-GLERLWEE 464

Query: 426 ESLTTLYASFTSDSRELVLVYRLKIE 349
           +SL+ LY S T+   +L L+Y LK +
Sbjct: 465 KSLSELYPSLTTCQGDLELLYSLKAQ 490


>ref|XP_002273941.2| PREDICTED: putative E3 ubiquitin-protein ligase RING1a-like [Vitis
           vinifera]
          Length = 534

 Score = 56.6 bits (135), Expect = 5e-06
 Identities = 31/87 (35%), Positives = 48/87 (55%)
 Frame = -1

Query: 606 TMSIKHLCQFIALQTSTLLEGVEIYARKPRVETMSMRCARPEGEPSTDPSSAGLLRLEGE 427
           T+S++HLCQ++ALQT  L + VEI   K ++  ++     P    S DP S  L  LE +
Sbjct: 453 TLSVRHLCQYVALQTPLLADEVEILVIKEQLSKLN-----PSNSSSPDPCSDRLQVLEAQ 507

Query: 426 ESLTTLYASFTSDSRELVLVYRLKIES 346
           E+L  L     ++   L+L YR K+ +
Sbjct: 508 ETLAVLKTMRNANQSHLLLAYRRKLSA 534


>emb|CBI30594.3| unnamed protein product [Vitis vinifera]
          Length = 433

 Score = 56.6 bits (135), Expect = 5e-06
 Identities = 31/87 (35%), Positives = 48/87 (55%)
 Frame = -1

Query: 606 TMSIKHLCQFIALQTSTLLEGVEIYARKPRVETMSMRCARPEGEPSTDPSSAGLLRLEGE 427
           T+S++HLCQ++ALQT  L + VEI   K ++  ++     P    S DP S  L  LE +
Sbjct: 352 TLSVRHLCQYVALQTPLLADEVEILVIKEQLSKLN-----PSNSSSPDPCSDRLQVLEAQ 406

Query: 426 ESLTTLYASFTSDSRELVLVYRLKIES 346
           E+L  L     ++   L+L YR K+ +
Sbjct: 407 ETLAVLKTMRNANQSHLLLAYRRKLSA 433


>ref|XP_006655452.1| PREDICTED: uncharacterized protein LOC102712087 [Oryza brachyantha]
          Length = 870

 Score = 55.8 bits (133), Expect = 9e-06
 Identities = 36/86 (41%), Positives = 46/86 (53%)
 Frame = -1

Query: 606 TMSIKHLCQFIALQTSTLLEGVEIYARKPRVETMSMRCARPEGEPSTDPSSAGLLRLEGE 427
           T S++HLCQFIALQ S   + VEI+ RK  +            E   D  +  L RLE E
Sbjct: 353 TFSVRHLCQFIALQLSRHAKEVEIFVRKNPINGCFAATDTSTDEIKLDHDT--LERLEEE 410

Query: 426 ESLTTLYASFTSDSRELVLVYRLKIE 349
           +SL+ LY S  S   +L L+Y LK E
Sbjct: 411 KSLSELYPSLASGHGDLELLYSLKTE 436


>ref|XP_003566083.1| PREDICTED: uncharacterized protein LOC100846593 [Brachypodium
           distachyon]
          Length = 917

 Score = 55.8 bits (133), Expect = 9e-06
 Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
 Frame = -1

Query: 606 TMSIKHLCQFIALQTSTLLEGVEIYARK-PRVETMSMRCARPEGEPSTDPSSAGLLRLEG 430
           T S+ HLCQF+ALQ S   + VEIY RK P  +  +M+      E   D  + GL RL+ 
Sbjct: 396 TFSVSHLCQFVALQLSRQAKEVEIYIRKNPGNKCFAMK-DTDAAEEKLDLFN-GLERLKE 453

Query: 429 EESLTTLYASFTSDSRELVLVYRLKIES 346
           EESL  LY +F S   +L L+Y L+ ++
Sbjct: 454 EESLAELYPAFASRQGDLELMYALRTQA 481


Top