BLASTX nr result
ID: Zingiber23_contig00016077
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00016077
(224 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EOX96971.1| Cleavage and polyadenylation specificity factor 3... 74 2e-11
ref|XP_002281594.1| PREDICTED: cleavage and polyadenylation spec... 68 1e-09
gb|EXB51974.1| Cleavage and polyadenylation specificity factor C... 67 3e-09
ref|XP_006468290.1| PREDICTED: cleavage and polyadenylation spec... 64 2e-08
ref|XP_002523201.1| conserved hypothetical protein [Ricinus comm... 64 3e-08
emb|CAN61344.1| hypothetical protein VITISV_022201 [Vitis vinifera] 63 4e-08
ref|XP_006448925.1| hypothetical protein CICLE_v10014454mg [Citr... 62 6e-08
ref|XP_006448924.1| hypothetical protein CICLE_v10014454mg [Citr... 62 6e-08
gb|EMJ15374.1| hypothetical protein PRUPE_ppa019072mg [Prunus pe... 62 8e-08
ref|XP_003546247.1| PREDICTED: cleavage and polyadenylation spec... 60 3e-07
gb|ESW19498.1| hypothetical protein PHAVU_006G130200g [Phaseolus... 58 2e-06
ref|XP_004966206.1| PREDICTED: zinc finger CCCH domain-containin... 57 3e-06
ref|XP_004141524.1| PREDICTED: cleavage and polyadenylation spec... 56 4e-06
>gb|EOX96971.1| Cleavage and polyadenylation specificity factor 30 [Theobroma
cacao]
Length = 698
Score = 74.3 bits (181), Expect = 2e-11
Identities = 38/69 (55%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Frame = +1
Query: 19 SNNRAAKRDHRRPANDRYESGSDQGNRGQEMVGTPSGVDDDAGYWQGGDKA-SDDKYTAG 195
++ RA KRD R P NDRY +GS+QG RGQEM G +DD+ Y Q G KA +D++ AG
Sbjct: 600 NSGRAVKRDQRTPTNDRYGAGSEQG-RGQEMAGPGGRLDDETQYQQEGQKAHHEDQFAAG 658
Query: 196 RSFQNDESE 222
SF+NDESE
Sbjct: 659 NSFRNDESE 667
>ref|XP_002281594.1| PREDICTED: cleavage and polyadenylation specificity factor
CPSF30-like [Vitis vinifera]
Length = 673
Score = 67.8 bits (164), Expect = 1e-09
Identities = 38/74 (51%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Frame = +1
Query: 10 PPLSNNRAAKRDHRRPANDR---YESGSDQGNRGQEMVGTPSGVDDDAGYWQGGDKASDD 180
PP S N KRD R P NDR Y GSDQG RGQ+M G DD+ Y QG DD
Sbjct: 587 PPNSQNNRTKRDQRTPVNDRNDRYSGGSDQG-RGQDMAGP----DDETQYLQGLKSQQDD 641
Query: 181 KYTAGRSFQNDESE 222
++ G SF+NDESE
Sbjct: 642 QFGGGNSFRNDESE 655
>gb|EXB51974.1| Cleavage and polyadenylation specificity factor CPSF30 [Morus
notabilis]
Length = 710
Score = 67.0 bits (162), Expect = 3e-09
Identities = 40/75 (53%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Frame = +1
Query: 10 PPLSN-NRAAKRDHRRPANDR---YESGSDQGNRGQEMVGTPSGVDDDAGYWQGGDKASD 177
PP N NR +RD R ANDR Y +GSDQ RGQEM G G +DDA Y G +
Sbjct: 606 PPSQNMNRPPRRDQRGLANDRNERYGAGSDQV-RGQEMSGPAGGPEDDAHYQLGAKARQE 664
Query: 178 DKYTAGRSFQNDESE 222
D+Y AG SF+NDESE
Sbjct: 665 DQYGAGNSFRNDESE 679
>ref|XP_006468290.1| PREDICTED: cleavage and polyadenylation specificity factor
CPSF30-like [Citrus sinensis]
Length = 683
Score = 63.9 bits (154), Expect = 2e-08
Identities = 36/71 (50%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Frame = +1
Query: 19 SNNRAAKRDHR---RPANDRYESGSDQGNRGQEMVGTPSGVDDDAGYWQGGDKASDDKYT 189
+++RAAKRD R NDRY +GSDQG R QEM G G DD+ Y Q G KA+ +
Sbjct: 583 NSSRAAKRDVRGSINDRNDRYSAGSDQG-RAQEMGGPGRGPDDEVQYQQEGSKANQEDQY 641
Query: 190 AGRSFQNDESE 222
R+F+NDESE
Sbjct: 642 GSRNFRNDESE 652
>ref|XP_002523201.1| conserved hypothetical protein [Ricinus communis]
gi|223537608|gb|EEF39232.1| conserved hypothetical
protein [Ricinus communis]
Length = 702
Score = 63.5 bits (153), Expect = 3e-08
Identities = 40/75 (53%), Positives = 47/75 (62%), Gaps = 4/75 (5%)
Frame = +1
Query: 10 PPL---SNNRAAKRDHRRPANDRYESGSDQGNRGQEMVGTPSGVDDDAGYWQGGDKAS-D 177
PPL S R KRD R ANDRY +GSDQ G+ G P DD+A Y Q G KAS +
Sbjct: 603 PPLPTPSPQRPVKRDQRMTANDRYSTGSDQ---GRNTAGEP---DDEARYQQEGLKASHE 656
Query: 178 DKYTAGRSFQNDESE 222
D++ AG SF+NDESE
Sbjct: 657 DQFGAGNSFRNDESE 671
>emb|CAN61344.1| hypothetical protein VITISV_022201 [Vitis vinifera]
Length = 299
Score = 63.2 bits (152), Expect = 4e-08
Identities = 36/74 (48%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Frame = +1
Query: 10 PPLSNNRAAKRDHRRPANDR---YESGSDQGNRGQEMVGTPSGVDDDAGYWQGGDKASDD 180
P N KRD R P NDR Y GSDQG RGQ+M G DD+ Y QG DD
Sbjct: 213 PNSQNTNRTKRDQRTPVNDRNDRYSGGSDQG-RGQDMAGP----DDETQYLQGLKSQQDD 267
Query: 181 KYTAGRSFQNDESE 222
++ G SF+NDESE
Sbjct: 268 QFGGGNSFRNDESE 281
>ref|XP_006448925.1| hypothetical protein CICLE_v10014454mg [Citrus clementina]
gi|557551536|gb|ESR62165.1| hypothetical protein
CICLE_v10014454mg [Citrus clementina]
Length = 672
Score = 62.4 bits (150), Expect = 6e-08
Identities = 35/71 (49%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Frame = +1
Query: 19 SNNRAAKRDHR---RPANDRYESGSDQGNRGQEMVGTPSGVDDDAGYWQGGDKASDDKYT 189
+++R AKRD R NDRY +GSDQG R QEM G G DD+ Y Q G KA+ +
Sbjct: 572 NSSRVAKRDVRGSINDRNDRYSAGSDQG-RAQEMGGPGRGPDDEVQYQQEGSKANQEDQY 630
Query: 190 AGRSFQNDESE 222
R+F+NDESE
Sbjct: 631 GSRNFRNDESE 641
>ref|XP_006448924.1| hypothetical protein CICLE_v10014454mg [Citrus clementina]
gi|557551535|gb|ESR62164.1| hypothetical protein
CICLE_v10014454mg [Citrus clementina]
Length = 701
Score = 62.4 bits (150), Expect = 6e-08
Identities = 35/71 (49%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Frame = +1
Query: 19 SNNRAAKRDHR---RPANDRYESGSDQGNRGQEMVGTPSGVDDDAGYWQGGDKASDDKYT 189
+++R AKRD R NDRY +GSDQG R QEM G G DD+ Y Q G KA+ +
Sbjct: 601 NSSRVAKRDVRGSINDRNDRYSAGSDQG-RAQEMGGPGRGPDDEVQYQQEGSKANQEDQY 659
Query: 190 AGRSFQNDESE 222
R+F+NDESE
Sbjct: 660 GSRNFRNDESE 670
>gb|EMJ15374.1| hypothetical protein PRUPE_ppa019072mg [Prunus persica]
Length = 695
Score = 62.0 bits (149), Expect = 8e-08
Identities = 36/76 (47%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Frame = +1
Query: 10 PPLSNN--RAAKRDHRRPANDR---YESGSDQGNRGQEMVGTPSGVDDDAGYWQGGDKAS 174
PP S N R KRD R P+NDR Y +GS QG +GQE+ G G DD+A Y Q
Sbjct: 592 PPSSQNTNRMQKRDPRGPSNDRNERYSAGSGQG-KGQEIPGLAGGPDDEARYQQASKAYR 650
Query: 175 DDKYTAGRSFQNDESE 222
+D+Y AG + +ND+SE
Sbjct: 651 EDQYGAGNNSRNDDSE 666
>ref|XP_003546247.1| PREDICTED: cleavage and polyadenylation specificity factor
CPSF30-like [Glycine max]
Length = 691
Score = 60.1 bits (144), Expect = 3e-07
Identities = 35/71 (49%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Frame = +1
Query: 13 PLSNNRAAKRDHRRP-ANDRYESGSDQGNRGQEMVGTPSGVDDDAGYWQGGDKASDDKYT 189
P + NRAAKRD R NDR+ SGS+QG + Q+M+ G DDDA Y Q G K + D +
Sbjct: 603 PQNANRAAKRDQRTADRNDRFGSGSEQG-KSQDMLSQSGGPDDDAQY-QQGYKGNQDDHP 660
Query: 190 AGRSFQNDESE 222
A +F+ND+SE
Sbjct: 661 AVNNFRNDDSE 671
>gb|ESW19498.1| hypothetical protein PHAVU_006G130200g [Phaseolus vulgaris]
Length = 697
Score = 57.8 bits (138), Expect = 2e-06
Identities = 34/71 (47%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Frame = +1
Query: 13 PLSNNRAAKRDHR-RPANDRYESGSDQGNRGQEMVGTPSGVDDDAGYWQGGDKASDDKYT 189
P + NR AKRD R NDRY SGS+QG + Q+M+ DDD Y Q G KA+ D +
Sbjct: 599 PQNTNRLAKRDQRTTDRNDRYGSGSEQG-KSQDMLSQSGAPDDDMQY-QQGYKANQDDHP 656
Query: 190 AGRSFQNDESE 222
A +F+ND+SE
Sbjct: 657 AVNNFRNDDSE 667
>ref|XP_004966206.1| PREDICTED: zinc finger CCCH domain-containing protein 45-like
[Setaria italica]
Length = 637
Score = 56.6 bits (135), Expect = 3e-06
Identities = 33/74 (44%), Positives = 44/74 (59%)
Frame = +1
Query: 1 FLHPPLSNNRAAKRDHRRPANDRYESGSDQGNRGQEMVGTPSGVDDDAGYWQGGDKASDD 180
F+ PP NNRAAKR+ RRP DR+E+ SDQG+RG E SG D G S D
Sbjct: 563 FMPPPPPNNRAAKREQRRPGGDRFETVSDQGSRGHE----NSGAD-------GARSQSGD 611
Query: 181 KYTAGRSFQNDESE 222
+Y+ + ++D+SE
Sbjct: 612 RYSRS-ALRDDDSE 624
>ref|XP_004141524.1| PREDICTED: cleavage and polyadenylation specificity factor
CPSF30-like [Cucumis sativus]
Length = 707
Score = 56.2 bits (134), Expect = 4e-06
Identities = 32/66 (48%), Positives = 41/66 (62%)
Frame = +1
Query: 25 NRAAKRDHRRPANDRYESGSDQGNRGQEMVGTPSGVDDDAGYWQGGDKASDDKYTAGRSF 204
NRA KRD R NDRY G DQ N+G E+ SG D++ Y QG SD++Y G +F
Sbjct: 614 NRAIKRDQRGLTNDRYIVGMDQ-NKGVEIQS--SGRDEEMQYKQGSKAYSDEQYGTGTTF 670
Query: 205 QNDESE 222
+N+ESE
Sbjct: 671 RNEESE 676