BLASTX nr result
ID: Zingiber23_contig00014061
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00014061
(226 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006594369.1| PREDICTED: DNA-directed RNA polymerase I sub... 113 3e-23
ref|XP_003542805.1| PREDICTED: DNA-directed RNA polymerase I sub... 113 3e-23
ref|XP_006601019.1| PREDICTED: probable DNA-directed RNA polymer... 112 5e-23
ref|XP_006464287.1| PREDICTED: probable DNA-directed RNA polymer... 112 5e-23
ref|XP_006428126.1| hypothetical protein CICLE_v10024768mg [Citr... 112 5e-23
ref|XP_004486057.1| PREDICTED: probable DNA-directed RNA polymer... 112 5e-23
ref|XP_003550091.1| PREDICTED: probable DNA-directed RNA polymer... 112 5e-23
gb|EOY19647.1| Nuclear RNA polymerase A2 isoform 2 [Theobroma ca... 111 1e-22
ref|XP_002529996.1| DNA-directed RNA polymerase I subunit, putat... 110 3e-22
ref|XP_002263835.2| PREDICTED: DNA-directed RNA polymerase I sub... 108 6e-22
ref|XP_006415533.1| hypothetical protein EUTSA_v10006600mg [Eutr... 108 7e-22
ref|XP_006415532.1| hypothetical protein EUTSA_v10006599mg [Eutr... 108 7e-22
ref|XP_004307166.1| PREDICTED: DNA-directed RNA polymerase I sub... 108 7e-22
ref|XP_002297732.2| DNA-directed RNA polymerase family protein [... 108 1e-21
ref|XP_006366498.1| PREDICTED: probable DNA-directed RNA polymer... 107 2e-21
ref|XP_004300118.1| PREDICTED: DNA-directed RNA polymerase I sub... 107 2e-21
ref|XP_004486056.1| PREDICTED: DNA-directed RNA polymerase I sub... 107 2e-21
ref|XP_006306612.1| hypothetical protein CARUB_v10008127mg [Caps... 107 2e-21
gb|AAG10602.1|AC008030_2 Similar to DNA-directed RNA polymerase ... 107 2e-21
gb|AAG52049.1|AC022455_3 DNA-directed RNA polymerase subunit, pu... 107 2e-21
>ref|XP_006594369.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform X2
[Glycine max]
Length = 1151
Score = 113 bits (282), Expect = 3e-23
Identities = 55/80 (68%), Positives = 60/80 (75%), Gaps = 6/80 (7%)
Frame = +3
Query: 3 RGGGIRFGEMERDAVLAHGAAYLLHDRLHTSSDYHIAHVCSDCGSLLAATTKQPQKK--- 173
RGGGIRFGEMERD++LAHGAAYLLHDRLHT SDYHIA VCS CGS+LA T QPQK+
Sbjct: 1032 RGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHIADVCSLCGSMLATTFIQPQKRPVR 1091
Query: 174 ---SLPPAGTPKSYICQACK 224
LPP PK C AC+
Sbjct: 1092 EIGGLPPGRAPKKVTCHACQ 1111
>ref|XP_003542805.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform X1
[Glycine max]
Length = 1175
Score = 113 bits (282), Expect = 3e-23
Identities = 55/80 (68%), Positives = 60/80 (75%), Gaps = 6/80 (7%)
Frame = +3
Query: 3 RGGGIRFGEMERDAVLAHGAAYLLHDRLHTSSDYHIAHVCSDCGSLLAATTKQPQKK--- 173
RGGGIRFGEMERD++LAHGAAYLLHDRLHT SDYHIA VCS CGS+LA T QPQK+
Sbjct: 1056 RGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHIADVCSLCGSMLATTFIQPQKRPVR 1115
Query: 174 ---SLPPAGTPKSYICQACK 224
LPP PK C AC+
Sbjct: 1116 EIGGLPPGRAPKKVTCHACQ 1135
>ref|XP_006601019.1| PREDICTED: probable DNA-directed RNA polymerase I subunit RPA2-like
isoform X2 [Glycine max]
Length = 1004
Score = 112 bits (280), Expect = 5e-23
Identities = 54/80 (67%), Positives = 59/80 (73%), Gaps = 6/80 (7%)
Frame = +3
Query: 3 RGGGIRFGEMERDAVLAHGAAYLLHDRLHTSSDYHIAHVCSDCGSLLAATTKQPQKK--- 173
RGGGIRFGEMERD++LAHGAAYLLHDRLHT SDYHIA VCS CGS+L T QPQK+
Sbjct: 885 RGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHIADVCSLCGSMLTTTFTQPQKRPVR 944
Query: 174 ---SLPPAGTPKSYICQACK 224
LPP PK C AC+
Sbjct: 945 EIGGLPPGRAPKKVTCHACQ 964
>ref|XP_006464287.1| PREDICTED: probable DNA-directed RNA polymerase I subunit RPA2-like
isoform X1 [Citrus sinensis]
Length = 1175
Score = 112 bits (280), Expect = 5e-23
Identities = 54/80 (67%), Positives = 61/80 (76%), Gaps = 6/80 (7%)
Frame = +3
Query: 3 RGGGIRFGEMERDAVLAHGAAYLLHDRLHTSSDYHIAHVCSDCGSLLAATTKQPQKKS-- 176
RGGGIRFGEMERD++LAHGAAYLLHDRLHT SDYH+A VCS CGS+L AT PQK++
Sbjct: 1058 RGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIR 1117
Query: 177 ----LPPAGTPKSYICQACK 224
LPPA PK C AC+
Sbjct: 1118 EIGGLPPARAPKKVTCHACQ 1137
>ref|XP_006428126.1| hypothetical protein CICLE_v10024768mg [Citrus clementina]
gi|557530116|gb|ESR41366.1| hypothetical protein
CICLE_v10024768mg [Citrus clementina]
Length = 1082
Score = 112 bits (280), Expect = 5e-23
Identities = 54/80 (67%), Positives = 61/80 (76%), Gaps = 6/80 (7%)
Frame = +3
Query: 3 RGGGIRFGEMERDAVLAHGAAYLLHDRLHTSSDYHIAHVCSDCGSLLAATTKQPQKKS-- 176
RGGGIRFGEMERD++LAHGAAYLLHDRLHT SDYH+A VCS CGS+L AT PQK++
Sbjct: 965 RGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIR 1024
Query: 177 ----LPPAGTPKSYICQACK 224
LPPA PK C AC+
Sbjct: 1025 EIGGLPPARAPKKVTCHACQ 1044
>ref|XP_004486057.1| PREDICTED: probable DNA-directed RNA polymerase I subunit RPA2-like
isoform X1 [Cicer arietinum]
gi|502078798|ref|XP_004486058.1| PREDICTED: probable
DNA-directed RNA polymerase I subunit RPA2-like isoform
X2 [Cicer arietinum]
Length = 1177
Score = 112 bits (280), Expect = 5e-23
Identities = 53/80 (66%), Positives = 61/80 (76%), Gaps = 6/80 (7%)
Frame = +3
Query: 3 RGGGIRFGEMERDAVLAHGAAYLLHDRLHTSSDYHIAHVCSDCGSLLAATTKQPQKK--- 173
RGGGIRFGEMERD++LAHGAAYLLHDRLHT SDYHIA VCS CGS+L T +QP+K+
Sbjct: 1060 RGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHIADVCSICGSMLTTTFQQPRKRPVR 1119
Query: 174 ---SLPPAGTPKSYICQACK 224
LPPA P+ C AC+
Sbjct: 1120 EIGGLPPARAPRKVTCHACQ 1139
>ref|XP_003550091.1| PREDICTED: probable DNA-directed RNA polymerase I subunit RPA2-like
isoform X1 [Glycine max]
Length = 1175
Score = 112 bits (280), Expect = 5e-23
Identities = 54/80 (67%), Positives = 59/80 (73%), Gaps = 6/80 (7%)
Frame = +3
Query: 3 RGGGIRFGEMERDAVLAHGAAYLLHDRLHTSSDYHIAHVCSDCGSLLAATTKQPQKK--- 173
RGGGIRFGEMERD++LAHGAAYLLHDRLHT SDYHIA VCS CGS+L T QPQK+
Sbjct: 1056 RGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHIADVCSLCGSMLTTTFTQPQKRPVR 1115
Query: 174 ---SLPPAGTPKSYICQACK 224
LPP PK C AC+
Sbjct: 1116 EIGGLPPGRAPKKVTCHACQ 1135
>gb|EOY19647.1| Nuclear RNA polymerase A2 isoform 2 [Theobroma cacao]
Length = 1180
Score = 111 bits (277), Expect = 1e-22
Identities = 54/80 (67%), Positives = 59/80 (73%), Gaps = 6/80 (7%)
Frame = +3
Query: 3 RGGGIRFGEMERDAVLAHGAAYLLHDRLHTSSDYHIAHVCSDCGSLLAATTKQPQKK--- 173
RGGGIRFGEMERDA+LAHGAAYLLHDRLHT SDYHIA VCS CGS+L + QP K+
Sbjct: 1063 RGGGIRFGEMERDAMLAHGAAYLLHDRLHTCSDYHIADVCSLCGSILTTSIVQPPKRVVR 1122
Query: 174 ---SLPPAGTPKSYICQACK 224
LPPA PK C AC+
Sbjct: 1123 EIGGLPPARAPKKVTCHACQ 1142
>ref|XP_002529996.1| DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
gi|223530519|gb|EEF32401.1| DNA-directed RNA polymerase I
subunit, putative [Ricinus communis]
Length = 1159
Score = 110 bits (274), Expect = 3e-22
Identities = 53/80 (66%), Positives = 59/80 (73%), Gaps = 6/80 (7%)
Frame = +3
Query: 3 RGGGIRFGEMERDAVLAHGAAYLLHDRLHTSSDYHIAHVCSDCGSLLAATTKQPQKK--- 173
RGGGIRFGEMERDA+LAHGAAYLLHDRLHT SDYHIA VCS CGS+L + Q QK+
Sbjct: 1042 RGGGIRFGEMERDAMLAHGAAYLLHDRLHTCSDYHIADVCSLCGSILTTSFIQTQKRVVR 1101
Query: 174 ---SLPPAGTPKSYICQACK 224
LPP G PK C +C+
Sbjct: 1102 DIGGLPPVGAPKKVACHSCQ 1121
>ref|XP_002263835.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Vitis
vinifera]
Length = 1142
Score = 108 bits (271), Expect = 6e-22
Identities = 52/80 (65%), Positives = 60/80 (75%), Gaps = 6/80 (7%)
Frame = +3
Query: 3 RGGGIRFGEMERDAVLAHGAAYLLHDRLHTSSDYHIAHVCSDCGSLLAATTKQPQKKS-- 176
RGGGIRFGEMERD++LAHGAAYLLHDRLHT SD+HIA VCS CGS+L + QPQK++
Sbjct: 1025 RGGGIRFGEMERDSMLAHGAAYLLHDRLHTCSDHHIADVCSLCGSILTTSIIQPQKRAVR 1084
Query: 177 ----LPPAGTPKSYICQACK 224
LPP PK C AC+
Sbjct: 1085 EIGGLPPGRAPKKVTCHACQ 1104
>ref|XP_006415533.1| hypothetical protein EUTSA_v10006600mg [Eutrema salsugineum]
gi|557093304|gb|ESQ33886.1| hypothetical protein
EUTSA_v10006600mg [Eutrema salsugineum]
Length = 1181
Score = 108 bits (270), Expect = 7e-22
Identities = 53/81 (65%), Positives = 58/81 (71%), Gaps = 7/81 (8%)
Frame = +3
Query: 3 RGGGIRFGEMERDAVLAHGAAYLLHDRLHTSSDYHIAHVCSDCGSLLAATTKQPQKK--- 173
RGGGIRFGEMERDA+LAHGA+YLLHDRLHTSSDYHIA VCS CG LL + Q+K
Sbjct: 1058 RGGGIRFGEMERDAMLAHGASYLLHDRLHTSSDYHIADVCSLCGGLLTCSVVNVQQKKLI 1117
Query: 174 ----SLPPAGTPKSYICQACK 224
LPP TPK C +CK
Sbjct: 1118 QGIGKLPPGRTPKKVTCDSCK 1138
>ref|XP_006415532.1| hypothetical protein EUTSA_v10006599mg [Eutrema salsugineum]
gi|557093303|gb|ESQ33885.1| hypothetical protein
EUTSA_v10006599mg [Eutrema salsugineum]
Length = 1183
Score = 108 bits (270), Expect = 7e-22
Identities = 53/81 (65%), Positives = 60/81 (74%), Gaps = 7/81 (8%)
Frame = +3
Query: 3 RGGGIRFGEMERDAVLAHGAAYLLHDRLHTSSDYHIAHVCSDCGSLLAATTKQPQKK--- 173
RGGGIRFGEMERDA+LAHGA+YLLHDRLHTSSD+HIA VCS CGSLL ++ Q+K
Sbjct: 1060 RGGGIRFGEMERDAMLAHGASYLLHDRLHTSSDHHIADVCSLCGSLLTSSVVNVQQKKLI 1119
Query: 174 ----SLPPAGTPKSYICQACK 224
LPP TPK C +CK
Sbjct: 1120 QDIGKLPPGRTPKKVTCDSCK 1140
>ref|XP_004307166.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Fragaria
vesca subsp. vesca]
Length = 1169
Score = 108 bits (270), Expect = 7e-22
Identities = 52/79 (65%), Positives = 58/79 (73%), Gaps = 5/79 (6%)
Frame = +3
Query: 3 RGGGIRFGEMERDAVLAHGAAYLLHDRLHTSSDYHIAHVCSDCGSLLAATTKQPQK---- 170
RGGGIRFGEMERD++LAHGAAYLLHDRLHT SDYHIA VCS CGS+L ++ QPQ
Sbjct: 1053 RGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHIADVCSLCGSILTTSSVQPQVPVRE 1112
Query: 171 -KSLPPAGTPKSYICQACK 224
+PP PK C ACK
Sbjct: 1113 IPGMPPMRAPKKVTCHACK 1131
>ref|XP_002297732.2| DNA-directed RNA polymerase family protein [Populus trichocarpa]
gi|550346693|gb|EEE82537.2| DNA-directed RNA polymerase
family protein [Populus trichocarpa]
Length = 1117
Score = 108 bits (269), Expect = 1e-21
Identities = 53/80 (66%), Positives = 60/80 (75%), Gaps = 6/80 (7%)
Frame = +3
Query: 3 RGGGIRFGEMERDAVLAHGAAYLLHDRLHTSSDYHIAHVCSDCGSLLAATTKQPQKK--- 173
RGGGIRFGEMERD++LAHGAAYLLHDRLHT SDYHIA VCS CGS+L T QPQ++
Sbjct: 1003 RGGGIRFGEMERDSMLAHGAAYLLHDRLHTCSDYHIADVCSICGSIL-TTHYQPQRRIVR 1061
Query: 174 ---SLPPAGTPKSYICQACK 224
LPP PK +C AC+
Sbjct: 1062 DIGGLPPVKAPKKVVCHACQ 1081
>ref|XP_006366498.1| PREDICTED: probable DNA-directed RNA polymerase I subunit RPA2-like
[Solanum tuberosum]
Length = 1179
Score = 107 bits (267), Expect = 2e-21
Identities = 50/80 (62%), Positives = 62/80 (77%), Gaps = 6/80 (7%)
Frame = +3
Query: 3 RGGGIRFGEMERDAVLAHGAAYLLHDRLHTSSDYHIAHVCSDCGSLLAATTKQPQKKSLP 182
RGGG+RFGEMERD++LAHGAAYLLHDRLHTSSD+HIA VCS+CGS+L ++ QP K+++
Sbjct: 1062 RGGGVRFGEMERDSLLAHGAAYLLHDRLHTSSDHHIADVCSECGSVLTSSVIQPPKRAVQ 1121
Query: 183 ------PAGTPKSYICQACK 224
PA PK C AC+
Sbjct: 1122 VILKQLPAREPKKVTCVACR 1141
>ref|XP_004300118.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Fragaria
vesca subsp. vesca]
Length = 1171
Score = 107 bits (267), Expect = 2e-21
Identities = 51/79 (64%), Positives = 58/79 (73%), Gaps = 5/79 (6%)
Frame = +3
Query: 3 RGGGIRFGEMERDAVLAHGAAYLLHDRLHTSSDYHIAHVCSDCGSLLAATTKQPQKK--- 173
RGGGIRFGEMERD++LAHGAAYLLHDRLHT SDYHIA VCS CGS+L ++ QP +
Sbjct: 1055 RGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHIADVCSLCGSILTTSSVQPPVRVCE 1114
Query: 174 --SLPPAGTPKSYICQACK 224
+PP PK C ACK
Sbjct: 1115 IPGMPPMRAPKKVTCHACK 1133
>ref|XP_004486056.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Cicer
arietinum]
Length = 336
Score = 107 bits (266), Expect = 2e-21
Identities = 51/79 (64%), Positives = 59/79 (74%), Gaps = 6/79 (7%)
Frame = +3
Query: 6 GGGIRFGEMERDAVLAHGAAYLLHDRLHTSSDYHIAHVCSDCGSLLAATTKQPQKK---- 173
GGGIRFGEMERD++LAHGAAYLLHDRLHT SDYHIA VCS CGS+L T +QP+K+
Sbjct: 220 GGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHIADVCSICGSMLTTTFQQPRKRPVRE 279
Query: 174 --SLPPAGTPKSYICQACK 224
L PA P+ C AC+
Sbjct: 280 IGGLRPARAPRKVTCHACQ 298
>ref|XP_006306612.1| hypothetical protein CARUB_v10008127mg [Capsella rubella]
gi|482575323|gb|EOA39510.1| hypothetical protein
CARUB_v10008127mg [Capsella rubella]
Length = 1171
Score = 107 bits (266), Expect = 2e-21
Identities = 52/81 (64%), Positives = 60/81 (74%), Gaps = 7/81 (8%)
Frame = +3
Query: 3 RGGGIRFGEMERDAVLAHGAAYLLHDRLHTSSDYHIAHVCSDCGSLLAATTKQPQKK--- 173
RGGGIRFGEMERD++LAHGA+YLLHDRLHTSSD+HIA VCS CGSLL ++ Q+K
Sbjct: 1046 RGGGIRFGEMERDSLLAHGASYLLHDRLHTSSDHHIADVCSLCGSLLTSSIANVQQKKLI 1105
Query: 174 ----SLPPAGTPKSYICQACK 224
LPP TPK C +CK
Sbjct: 1106 QVTGKLPPGRTPKKVTCYSCK 1126
>gb|AAG10602.1|AC008030_2 Similar to DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
Length = 1233
Score = 107 bits (266), Expect = 2e-21
Identities = 52/81 (64%), Positives = 60/81 (74%), Gaps = 7/81 (8%)
Frame = +3
Query: 3 RGGGIRFGEMERDAVLAHGAAYLLHDRLHTSSDYHIAHVCSDCGSLLAATTKQPQKK--- 173
RGGGIRFGEMERD++LAHGA+YLLHDRLHTSSD+HIA VCS CGSLL ++ Q+K
Sbjct: 1113 RGGGIRFGEMERDSLLAHGASYLLHDRLHTSSDHHIADVCSLCGSLLTSSVVNVQQKKLI 1172
Query: 174 ----SLPPAGTPKSYICQACK 224
LPP TPK C +CK
Sbjct: 1173 QEIGKLPPGRTPKKVTCYSCK 1193
>gb|AAG52049.1|AC022455_3 DNA-directed RNA polymerase subunit, putative; 8546-1198 [Arabidopsis
thaliana]
Length = 1114
Score = 107 bits (266), Expect = 2e-21
Identities = 52/81 (64%), Positives = 60/81 (74%), Gaps = 7/81 (8%)
Frame = +3
Query: 3 RGGGIRFGEMERDAVLAHGAAYLLHDRLHTSSDYHIAHVCSDCGSLLAATTKQPQKK--- 173
RGGGIRFGEMERD++LAHGA+YLLHDRLHTSSD+HIA VCS CGSLL ++ Q+K
Sbjct: 994 RGGGIRFGEMERDSLLAHGASYLLHDRLHTSSDHHIADVCSLCGSLLTSSVVNVQQKKLI 1053
Query: 174 ----SLPPAGTPKSYICQACK 224
LPP TPK C +CK
Sbjct: 1054 QEIGKLPPGRTPKKVTCYSCK 1074