BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00010662
         (1516 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006372224.1| hypothetical protein POPTR_0018s14400g [Popu...   445   e-122
ref|XP_006372225.1| tRNA pseudouridine synthase family protein [...   439   e-120
ref|XP_002331405.1| predicted protein [Populus trichocarpa]           439   e-120
ref|XP_004299762.1| PREDICTED: tRNA pseudouridine synthase A-lik...   436   e-119
gb|EOY32187.1| Pseudouridine synthase isoform 2 [Theobroma cacao]     434   e-119
gb|EXC12817.1| tRNA pseudouridine synthase A [Morus notabilis]        433   e-119
ref|XP_002524161.1| pseudouridylate synthase, putative [Ricinus ...   432   e-118
ref|XP_004242889.1| PREDICTED: tRNA pseudouridine synthase A-lik...   432   e-118
gb|EOY32186.1| Pseudouridine synthase isoform 1 [Theobroma cacao]     428   e-117
ref|XP_002275354.2| PREDICTED: tRNA pseudouridine synthase A-lik...   428   e-117
ref|XP_006344572.1| PREDICTED: uncharacterized protein LOC102592...   427   e-117
gb|EMJ23926.1| hypothetical protein PRUPE_ppa006478mg [Prunus pe...   426   e-116
ref|XP_004166389.1| PREDICTED: tRNA pseudouridine synthase A-lik...   424   e-116
ref|XP_004137363.1| PREDICTED: tRNA pseudouridine synthase A-lik...   424   e-116
emb|CBI33811.3| unnamed protein product [Vitis vinifera]              424   e-116
gb|AFW76096.1| pseudouridylate synthase [Zea mays]                    424   e-116
gb|ACF83621.1| unknown [Zea mays]                                     424   e-116
dbj|BAD45865.1| pseudouridylate synthase-like [Oryza sativa Japo...   424   e-116
ref|XP_006474334.1| PREDICTED: uncharacterized protein LOC102622...   422   e-115
ref|XP_006453182.1| hypothetical protein CICLE_v10008288mg [Citr...   422   e-115

>ref|XP_006372224.1| hypothetical protein POPTR_0018s14400g [Populus trichocarpa]
            gi|550318755|gb|ERP50021.1| hypothetical protein
            POPTR_0018s14400g [Populus trichocarpa]
          Length = 448

 Score =  445 bits (1144), Expect = e-122
 Identities = 242/429 (56%), Positives = 296/429 (68%), Gaps = 3/429 (0%)
 Frame = +3

Query: 231  VME-KSTKVYYHYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXXXXXXXXXX 407
            VME ++ KVY  YNHTD+C+ SRW  RE +Q+++ARPW++VV+FY   V           
Sbjct: 29   VMEAQNDKVYVQYNHTDSCKFSRWTARESFQFMHARPWQEVVDFYSKSVNGQLSLLELFG 88

Query: 408  XXXXENHRPADTVEDFHSDRDISTEVTEPVKARTGRWERITFKIVLSYHGWSFDGWQKQP 587
                + H   D +E+  ++  +   V+   K+  GRW R+TFKIVLSYHG SFDGWQKQP
Sbjct: 89   TQAHDVHCD-DKIEEVSNETGLLEGVSNVDKS--GRWARVTFKIVLSYHGGSFDGWQKQP 145

Query: 588  GLHTVQGVVEQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQQVCSFYTWRK 767
            GL+TVQG+VE+ LGRFVDEKKA+QLKE+  P+EGC  VAGRTDKGV+ALQQVCSFYTWRK
Sbjct: 146  GLNTVQGLVEKSLGRFVDEKKAQQLKEQCKPLEGCASVAGRTDKGVSALQQVCSFYTWRK 205

Query: 768  DVSCGDIMHSINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLNDNEELITRCFE 947
            DV   +I  +IN+VAPGK+R   ++ VSR FHPNF+A WR+Y YI PLND E       E
Sbjct: 206  DVKPHEIEDAINDVAPGKVRVESISEVSRAFHPNFSAKWRRYLYIFPLNDGENREEIEGE 265

Query: 948  GHWSN--SSIGCEDDQMNELQENHSVEKEQQLTFSHLNEDGCPGISELKPRSFSISKVDQ 1121
            G   N  S   CE  Q NE  E  S E  +    S  +ED   G    KPRSFS+ +V+Q
Sbjct: 266  GGIENFSSHENCE-KQRNECGELASEENVENSIIS--DEDELQGAK--KPRSFSVCRVNQ 320

Query: 1122 LLQQLEGKSLSYKMFARDTKASRSSGPATECFMFHARAAETKIRCNLEDYENCQRVMCVE 1301
            LLQQLEGK LSYKMFARDTKASR+ GP TECF++HARA ET++     D+E   RVMCVE
Sbjct: 321  LLQQLEGKLLSYKMFARDTKASRNVGPPTECFLYHARATETRLPS--PDHEKGIRVMCVE 378

Query: 1302 LVANRFLRKMVRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXXDGLCLLNVGYG 1481
            L+ANRFLRKMVRVLVAT++REAAAGA +DAL+KLMD             DGLCL++VGY 
Sbjct: 379  LIANRFLRKMVRVLVATSVREAAAGAQEDALLKLMDATCRRATAPPAPPDGLCLVDVGYT 438

Query: 1482 EFKEKFCLI 1508
            EF  + CLI
Sbjct: 439  EFDPRNCLI 447


>ref|XP_006372225.1| tRNA pseudouridine synthase family protein [Populus trichocarpa]
            gi|550318756|gb|ERP50022.1| tRNA pseudouridine synthase
            family protein [Populus trichocarpa]
          Length = 457

 Score =  439 bits (1130), Expect = e-120
 Identities = 244/436 (55%), Positives = 293/436 (67%), Gaps = 10/436 (2%)
 Frame = +3

Query: 231  VME-KSTKVYYHYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXXXXXXXXXX 407
            VME ++ KVY  YNHTD+C+ SRW  RE +Q+++ARPW++VV+FY   V           
Sbjct: 29   VMEAQNDKVYVQYNHTDSCKFSRWTARESFQFMHARPWQEVVDFYSKSVNGQLSLLELFG 88

Query: 408  XXXXENHRPADTVEDFHSDRDIS-----TEVTEPVKA--RTGRWERITFKIVLSYHGWSF 566
                          D H D  I      T + E V    ++GRW R+TFKIVLSYHG SF
Sbjct: 89   TQVFFTME-LKKAHDVHCDDKIEEVSNETGLLEGVSNVDKSGRWARVTFKIVLSYHGGSF 147

Query: 567  DGWQKQPGLHTVQGVVEQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQQVC 746
            DGWQKQPGL+TVQG+VE+ LGRFVDEKKA+QLKE+  P+EGC  VAGRTDKGV+ALQQVC
Sbjct: 148  DGWQKQPGLNTVQGLVEKSLGRFVDEKKAQQLKEQCKPLEGCASVAGRTDKGVSALQQVC 207

Query: 747  SFYTWRKDVSCGDIMHSINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLNDNEE 926
            SFYTWRKDV   +I  +IN+VAPGK+R   ++ VSR FHPNF+A WR+Y YI PLND E 
Sbjct: 208  SFYTWRKDVKPHEIEDAINDVAPGKVRVESISEVSRAFHPNFSAKWRRYLYIFPLNDGEN 267

Query: 927  LITRCFEGHWSN--SSIGCEDDQMNELQENHSVEKEQQLTFSHLNEDGCPGISELKPRSF 1100
                  EG   N  S   CE  Q NE  E  S E  +    S  +ED   G    KPRSF
Sbjct: 268  REEIEGEGGIENFSSHENCE-KQRNECGELASEENVENSIIS--DEDELQGAK--KPRSF 322

Query: 1101 SISKVDQLLQQLEGKSLSYKMFARDTKASRSSGPATECFMFHARAAETKIRCNLEDYENC 1280
            S+ +V+QLLQQLEGK LSYKMFARDTKASR+ GP TECF++HARA ET++     D+E  
Sbjct: 323  SVCRVNQLLQQLEGKLLSYKMFARDTKASRNVGPPTECFLYHARATETRLPS--PDHEKG 380

Query: 1281 QRVMCVELVANRFLRKMVRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXXDGLC 1460
             RVMCVEL+ANRFLRKMVRVLVAT++REAAAGA +DAL+KLMD             DGLC
Sbjct: 381  IRVMCVELIANRFLRKMVRVLVATSVREAAAGAQEDALLKLMDATCRRATAPPAPPDGLC 440

Query: 1461 LLNVGYGEFKEKFCLI 1508
            L++VGY EF  + CLI
Sbjct: 441  LVDVGYTEFDPRNCLI 456


>ref|XP_002331405.1| predicted protein [Populus trichocarpa]
          Length = 428

 Score =  439 bits (1128), Expect = e-120
 Identities = 241/432 (55%), Positives = 290/432 (67%), Gaps = 9/432 (2%)
 Frame = +3

Query: 240  KSTKVYYHYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXXXXXXXXXXXXXX 419
            ++ KVY  YNHTD+C+ SRW  RE +Q+++ARPW++VV+FY   V               
Sbjct: 4    QNDKVYVQYNHTDSCKFSRWTARESFQFMHARPWQEVVDFYSKSVNGQLSLLELFGTQVF 63

Query: 420  ENHRPADTVEDFHSDRDIS-----TEVTEPVKA--RTGRWERITFKIVLSYHGWSFDGWQ 578
                      D H D  I      T + E V    ++GRW R+TFKIVLSYHG SFDGWQ
Sbjct: 64   FTME-LKKAHDVHCDDKIEEVSNETGLLEGVSNVDKSGRWARVTFKIVLSYHGGSFDGWQ 122

Query: 579  KQPGLHTVQGVVEQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQQVCSFYT 758
            KQPGL+TVQG+VE+ LGRFVDEKKA+QLKE+  P+EGC  VAGRTDKGV+ALQQVCSFYT
Sbjct: 123  KQPGLNTVQGLVEKSLGRFVDEKKAQQLKEQCKPLEGCASVAGRTDKGVSALQQVCSFYT 182

Query: 759  WRKDVSCGDIMHSINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLNDNEELITR 938
            WRKDV   +I  +IN+VAPGK+R   ++ VSR FHPNF+A WR+Y YI PLND E     
Sbjct: 183  WRKDVKPHEIEDAINDVAPGKVRVESISEVSRAFHPNFSAKWRRYLYIFPLNDGENREEI 242

Query: 939  CFEGHWSN--SSIGCEDDQMNELQENHSVEKEQQLTFSHLNEDGCPGISELKPRSFSISK 1112
              EG   N  S   CE  Q NE  E  S E  +    S  +ED   G    KPRSFS+ +
Sbjct: 243  EGEGGIENFSSHENCE-KQRNECGELASEENVENSIIS--DEDELQGAK--KPRSFSVCR 297

Query: 1113 VDQLLQQLEGKSLSYKMFARDTKASRSSGPATECFMFHARAAETKIRCNLEDYENCQRVM 1292
            V+QLLQQLEGK LSYKMFARDTKASR+ GP TECF++HARA ET++     D+E   RVM
Sbjct: 298  VNQLLQQLEGKLLSYKMFARDTKASRNVGPPTECFLYHARATETRLPS--PDHEKGIRVM 355

Query: 1293 CVELVANRFLRKMVRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXXDGLCLLNV 1472
            CVEL+ANRFLRKMVRVLVAT++REAAAGA +DAL+KLMD             DGLCL++V
Sbjct: 356  CVELIANRFLRKMVRVLVATSVREAAAGAQEDALLKLMDATCRRATAPPAPPDGLCLVDV 415

Query: 1473 GYGEFKEKFCLI 1508
            GY EF  + CLI
Sbjct: 416  GYTEFDPRNCLI 427


>ref|XP_004299762.1| PREDICTED: tRNA pseudouridine synthase A-like [Fragaria vesca subsp.
            vesca]
          Length = 410

 Score =  436 bits (1122), Expect = e-119
 Identities = 226/427 (52%), Positives = 289/427 (67%), Gaps = 6/427 (1%)
 Frame = +3

Query: 246  TKVYYHYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXXXXXXXXXXXXXXEN 425
            +KV   YNHTD C  +RW T+E +Q++ ARPW++V++FY ++V                 
Sbjct: 3    SKVLVQYNHTDPCAFARWTTKESFQFMSARPWQQVIDFYSDVVKGQKPLSALLGTSSLSK 62

Query: 426  HRPADTVEDFHSDRDISTEVTEPVKARTGRWERITFKIVLSYHGWSFDGWQKQPGLHTVQ 605
            +R  +++E  +S              R GRW R+TFKIV+SYHG SFDGWQKQP L+TVQ
Sbjct: 63   NRICNSIESVNSQN------------RGGRWARLTFKIVVSYHGGSFDGWQKQPELYTVQ 110

Query: 606  GVVEQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQQVCSFYTWRKDVSCGD 785
             VVEQCLGRFVDEKKA+ LKE+ +P+EG   VAGRTDKGVTAL QVCSFYTW KDV C D
Sbjct: 111  SVVEQCLGRFVDEKKAQMLKEKGLPLEGAATVAGRTDKGVTALNQVCSFYTWSKDVRCQD 170

Query: 786  IMHSINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLNDNEELITRCFEGHWSNS 965
            I  +I+  APGK+R + VT VSRVFHPNF+A WR+Y YI P ND+EE      +   SN 
Sbjct: 171  IADAIDNAAPGKLRTVSVTEVSRVFHPNFSAKWRRYLYIFPFNDDEE------DREQSND 224

Query: 966  SIGCEDDQMNELQENHSVEKEQQLTFSHLN------EDGCPGISELKPRSFSISKVDQLL 1127
            +   E+ Q+ +++ENH   +      S  N       D     +E KP+ FS+S+V++LL
Sbjct: 225  T--GENAQILKIKENHHEHEVVSDNCSEANVGNTNITDDVGLEAEKKPQMFSVSRVNKLL 282

Query: 1128 QQLEGKSLSYKMFARDTKASRSSGPATECFMFHARAAETKIRCNLEDYENCQRVMCVELV 1307
            Q+LEGK LSYKMFARDTKASR+ GP TECF+FHARA E ++ C+  ++E  +R+MC+EL+
Sbjct: 283  QKLEGKLLSYKMFARDTKASRNEGPPTECFVFHARAREYRLPCS--EHEKGRRIMCIELI 340

Query: 1308 ANRFLRKMVRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXXDGLCLLNVGYGEF 1487
            ANRFLR+M+RVLVAT+IREAAAGAD+DALIKLMD             DGLCL++VGY EF
Sbjct: 341  ANRFLRRMIRVLVATSIREAAAGADEDALIKLMDATCRRATAPPAPPDGLCLVDVGYEEF 400

Query: 1488 KEKFCLI 1508
                CLI
Sbjct: 401  DPLDCLI 407


>gb|EOY32187.1| Pseudouridine synthase isoform 2 [Theobroma cacao]
          Length = 446

 Score =  434 bits (1115), Expect = e-119
 Identities = 231/431 (53%), Positives = 290/431 (67%), Gaps = 4/431 (0%)
 Frame = +3

Query: 228  SVMEKST--KVYYHYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXXXXXXXX 401
            SVME     KVY HYNH+D+C  +RW  RE Y+++Y R W+ V++FY N+V         
Sbjct: 31   SVMENEAENKVYVHYNHSDSCSSARWTARESYRFMYDRAWQDVIDFYSNVVNGRLTLSTL 90

Query: 402  XXXXXXENHRPADTVEDFHSDRDISTEVTEPVKARTGRWERITFKIVLSYHGWSFDGWQK 581
                         T    H D + + EV++    R+GRWER+TFKI++SY+G +FDGWQK
Sbjct: 91   FG-----------TETSIHDDSE-TVEVSDEKGERSGRWERVTFKIIISYNGGAFDGWQK 138

Query: 582  QPGLHTVQGVVEQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQQVCSFYTW 761
            QPGL+TVQ +VE+ LGRFVDEKKA+ LKE+S P+EGC VVAGRTDKGV+A++QVCSFYTW
Sbjct: 139  QPGLNTVQEIVERSLGRFVDEKKAQLLKEKSKPLEGCAVVAGRTDKGVSAIRQVCSFYTW 198

Query: 762  RKDVSCGDIMHSINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLNDNEELITRC 941
            RKDV   DI  +IN VAPGK+R + V+ VSRVFHPNF+A WR Y YI PL++ E     C
Sbjct: 199  RKDVKPWDIEDAINSVAPGKLRVVSVSEVSRVFHPNFSAKWRHYLYIFPLSNQEIEKQSC 258

Query: 942  FEGHWSNSSI--GCEDDQMNELQENHSVEKEQQLTFSHLNEDGCPGISELKPRSFSISKV 1115
                   + I  G  ++Q N   EN   E  + L  S    D     +  KP  FS+ +V
Sbjct: 259  ENKKEVENFISDGNYNEQRNGYLENIRWENVENLIIS----DNMGLEAANKPTRFSVCRV 314

Query: 1116 DQLLQQLEGKSLSYKMFARDTKASRSSGPATECFMFHARAAETKIRCNLEDYENCQRVMC 1295
            +QLLQQLE K LSYKMFARDTKASR+ GP TECFM+HARAAE +I C++ D+   + VMC
Sbjct: 315  NQLLQQLERKLLSYKMFARDTKASRNIGPPTECFMYHARAAEARIPCSVNDHGEGREVMC 374

Query: 1296 VELVANRFLRKMVRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXXDGLCLLNVG 1475
            VELVANRFLRKMVRVLVAT+IREAAAGA++DAL+KLM              DGLCL++VG
Sbjct: 375  VELVANRFLRKMVRVLVATSIREAAAGAEEDALLKLMGATCRRATAPPAPPDGLCLVDVG 434

Query: 1476 YGEFKEKFCLI 1508
            Y EF  + CL+
Sbjct: 435  YTEFDPQNCLL 445


>gb|EXC12817.1| tRNA pseudouridine synthase A [Morus notabilis]
          Length = 446

 Score =  433 bits (1114), Expect = e-119
 Identities = 230/436 (52%), Positives = 288/436 (66%), Gaps = 14/436 (3%)
 Frame = +3

Query: 243  STKVYYHYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXXXXXXXXXXXXXXE 422
            + K Y HYNH+D CR SRW  RE YQ++Y RPW++V++FY NLV                
Sbjct: 34   TNKDYVHYNHSDPCRFSRWTARESYQFMYGRPWQQVLDFYSNLVNGTTSFSSLFPL---- 89

Query: 423  NHRPADTVEDFHSDRDISTEVTEPVKA-----RTGRWERITFKIVLSYHGWSFDGWQKQP 587
             H+    V+D   D +I     + VK      R+GRW R TFK+VL YHG SFDGWQKQP
Sbjct: 90   -HKKYQ-VDDDDYDAEIPEISDDKVKLKKSEERSGRWARATFKVVLGYHGASFDGWQKQP 147

Query: 588  GLHTVQGVVEQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQQVCSFYTWRK 767
            GL+TVQG+VE+ LGRFVDEKKA+ LK++ +P+E C VVAGRTDKGVTALQQVCSFYTWRK
Sbjct: 148  GLNTVQGLVERSLGRFVDEKKAQLLKDKCLPLEACTVVAGRTDKGVTALQQVCSFYTWRK 207

Query: 768  DVSCGDIMHSINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLNDNEELITRCFE 947
            D++C DI  +IN  A GK++A  V+ VSRVFHPNF+A WR+Y YI P ND E        
Sbjct: 208  DITCQDIEEAINNAALGKLKAKSVSEVSRVFHPNFSAKWRRYLYIFPFNDEE-------- 259

Query: 948  GHWSNSSIGCEDDQMNELQENHSVEKEQQLTFSHLNEDGCPGI---------SELKPRSF 1100
                      +++Q N+  EN    ++ +      N++    +         S  KP SF
Sbjct: 260  ----------DEEQSNKNGENLETYEKIESGCGEWNDESFGNLIIDDSEELESGKKPSSF 309

Query: 1101 SISKVDQLLQQLEGKSLSYKMFARDTKASRSSGPATECFMFHARAAETKIRCNLEDYENC 1280
            S+S+VDQLL+ LEGK LSYKMFARDTKASR+ GP TECF++HARAAE ++  +  D    
Sbjct: 310  SVSRVDQLLRLLEGKLLSYKMFARDTKASRNEGPPTECFIYHARAAEARLPTS--DCTEG 367

Query: 1281 QRVMCVELVANRFLRKMVRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXXDGLC 1460
            +++MCVELVANRFLRKMVRVLVAT+IREAAAGA++DAL+KLMD             DGLC
Sbjct: 368  RKIMCVELVANRFLRKMVRVLVATSIREAAAGAEEDALLKLMDATCRRATAPPAPPDGLC 427

Query: 1461 LLNVGYGEFKEKFCLI 1508
            L++VGY EFK   CLI
Sbjct: 428  LVDVGYSEFKPNNCLI 443


>ref|XP_002524161.1| pseudouridylate synthase, putative [Ricinus communis]
            gi|223536579|gb|EEF38224.1| pseudouridylate synthase,
            putative [Ricinus communis]
          Length = 443

 Score =  432 bits (1112), Expect = e-118
 Identities = 232/423 (54%), Positives = 289/423 (68%), Gaps = 3/423 (0%)
 Frame = +3

Query: 249  KVYYHYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXXXXXXXXXXXXXXENH 428
            K+Y+HYNHTD+C+  RW  RE +Q++YARPW++V +FY N+V                  
Sbjct: 32   KIYFHYNHTDSCKSFRWTARESFQFMYARPWQEVSDFYSNVVNGRLSFLELFRSQMHFVR 91

Query: 429  RPADTVEDFHSDRDISTEVTE-PVKARTGRWERITFKIVLSYHGWSFDGWQKQPGLHTVQ 605
              A   ED +      TE+     + R GRW R+ FKI LSYHG SFDGWQKQPGL+TVQ
Sbjct: 92   DDAKIQEDSNK-----TELEHFSNEDRFGRWARVNFKIDLSYHGGSFDGWQKQPGLNTVQ 146

Query: 606  GVVEQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQQVCSFYTWRKDVSCGD 785
            G+VE+ LG+FVDEKKA+QLKE   P+EGC VVAGRTDKGV+AL+QVCSFYTWRKDV   +
Sbjct: 147  GLVEKSLGKFVDEKKAQQLKEACKPLEGCAVVAGRTDKGVSALRQVCSFYTWRKDVRPHE 206

Query: 786  IMHSINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLNDNEELITRCFEGHWSNS 965
            I  +IN  APGKIR + V+ VSRVFHPNF+A WR+Y YI P+ND E+   + F+     +
Sbjct: 207  IEDAINSSAPGKIRVISVSEVSRVFHPNFSAKWRRYLYIFPINDGED-SEQSFDSEDLEN 265

Query: 966  SIGCE--DDQMNELQENHSVEKEQQLTFSHLNEDGCPGISELKPRSFSISKVDQLLQQLE 1139
                E  D+Q N   E  S E  ++L  S  ++D   G    KPR FSI +V+QLLQQLE
Sbjct: 266  LRSYEKYDEQRNGCAELTSEEHVEELITS--DKDELEGAK--KPRIFSICRVNQLLQQLE 321

Query: 1140 GKSLSYKMFARDTKASRSSGPATECFMFHARAAETKIRCNLEDYENCQRVMCVELVANRF 1319
            GK LSYK+FARDTKASR+ GP TECF++HARA E ++ C   D+   ++VMCVELVANRF
Sbjct: 322  GKLLSYKIFARDTKASRNVGPPTECFIYHARATEARLPC--PDHGEGRKVMCVELVANRF 379

Query: 1320 LRKMVRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXXDGLCLLNVGYGEFKEKF 1499
            LRKMVRVLVAT+IREAAAGA+DDAL+KLMD             DGLCL +VGY EF  + 
Sbjct: 380  LRKMVRVLVATSIREAAAGAEDDALLKLMDASCRRASAPPAPPDGLCLFDVGYTEFDAQI 439

Query: 1500 CLI 1508
            C++
Sbjct: 440  CIV 442


>ref|XP_004242889.1| PREDICTED: tRNA pseudouridine synthase A-like [Solanum lycopersicum]
          Length = 436

 Score =  432 bits (1111), Expect = e-118
 Identities = 219/421 (52%), Positives = 282/421 (66%), Gaps = 1/421 (0%)
 Frame = +3

Query: 249  KVYYHYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXXXXXXXXXXXXXXENH 428
            KV++HYNHTD+C+ SRW +RECY+++YARPW KVV+FY ++V                +H
Sbjct: 26   KVHFHYNHTDSCKFSRWTSRECYEFMYARPWHKVVDFYADMVKGHISLSGLFGKETPADH 85

Query: 429  RPADTVEDFHSDRDISTEVTEPVKARTGRWERITFKIVLSYHGWSFDGWQKQPGLHTVQG 608
              A+  ED      ++  V +  + ++GRW R  F IVLSYHG SFDGWQKQP L+TVQG
Sbjct: 86   EDAEIREDHEKSELVNIPVKDKSRDKSGRWARANFMIVLSYHGGSFDGWQKQPDLNTVQG 145

Query: 609  VVEQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQQVCSFYTWRKDVSCGDI 788
            +VE+ LG FVDEKKA+ LK++++P+E C +VAGRTDKGV+A QQVCSFYTWRKDV   D+
Sbjct: 146  LVERSLGEFVDEKKAQLLKDKNLPLEACALVAGRTDKGVSASQQVCSFYTWRKDVKIEDV 205

Query: 789  MHSINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLNDNEELITRCFEGHWSNSS 968
              ++++ APGKIR + +T VSR FHPNF+A WR Y YI P++D          G      
Sbjct: 206  KAALDKAAPGKIRVVSLTKVSREFHPNFSAKWRHYLYIFPIDD--------VLGEKQGGQ 257

Query: 969  IGCEDDQMNELQENHSVEKE-QQLTFSHLNEDGCPGISELKPRSFSISKVDQLLQQLEGK 1145
            I   DD  N  Q+N   + +  +   + +N +    +   KP  F + KV++LL QLEGK
Sbjct: 258  IWI-DDSTNVHQQNECDKSDVDKSNVNEINNENDKLVHGNKPTKFEVGKVNRLLGQLEGK 316

Query: 1146 SLSYKMFARDTKASRSSGPATECFMFHARAAETKIRCNLEDYENCQRVMCVELVANRFLR 1325
             LSYKMFARDTKASR+ GP TECF+FHARA ET I C  +   +  + MC+ELVANRFLR
Sbjct: 317  LLSYKMFARDTKASRNIGPPTECFVFHARAIETSIPCAKDG--SHMKTMCIELVANRFLR 374

Query: 1326 KMVRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXXDGLCLLNVGYGEFKEKFCL 1505
            KMVRVLVATAIREAAAGADDDAL+KLMD             DGLCL++VGY ++  + CL
Sbjct: 375  KMVRVLVATAIREAAAGADDDALLKLMDATCRRATAPPAPPDGLCLVDVGYTDYDIRHCL 434

Query: 1506 I 1508
            I
Sbjct: 435  I 435


>gb|EOY32186.1| Pseudouridine synthase isoform 1 [Theobroma cacao]
          Length = 444

 Score =  428 bits (1101), Expect = e-117
 Identities = 231/431 (53%), Positives = 289/431 (67%), Gaps = 4/431 (0%)
 Frame = +3

Query: 228  SVMEKST--KVYYHYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXXXXXXXX 401
            SVME     KVY HYNH+D+C  +RW  RE Y+++Y R W+ V++FY N+V         
Sbjct: 31   SVMENEAENKVYVHYNHSDSCSSARWTARESYRFMYDRAWQDVIDFYSNVVNGRLTLSTL 90

Query: 402  XXXXXXENHRPADTVEDFHSDRDISTEVTEPVKARTGRWERITFKIVLSYHGWSFDGWQK 581
                         T    H D + + EV++    R+GRWER+TFKI++SY+G +FDGWQK
Sbjct: 91   FG-----------TETSIHDDSE-TVEVSDEKGERSGRWERVTFKIIISYNGGAFDGWQK 138

Query: 582  QPGLHTVQGVVEQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQQVCSFYTW 761
            QPGL+TVQ +VE+ LGRFVDEKKA+ LKE+S P+EGC VVAGRTDKGV+A++QVCSFYTW
Sbjct: 139  QPGLNTVQEIVERSLGRFVDEKKAQLLKEKSKPLEGCAVVAGRTDKGVSAIRQVCSFYTW 198

Query: 762  RKDVSCGDIMHSINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLNDNEELITRC 941
            RKDV   DI  +IN VAPGK+R + V+ VSRVFHPNF+A WR Y YI PL++ E     C
Sbjct: 199  RKDVKPWDIEDAINSVAPGKLRVVSVSEVSRVFHPNFSAKWRHYLYIFPLSNQEIEKQSC 258

Query: 942  FEGHWSNSSI--GCEDDQMNELQENHSVEKEQQLTFSHLNEDGCPGISELKPRSFSISKV 1115
                   + I  G  ++Q N   EN   E  + L  S    D     +  KP  FS+ +V
Sbjct: 259  ENKKEVENFISDGNYNEQRNGYLENIRWENVENLIIS----DNMGLEAANKPTRFSVCRV 314

Query: 1116 DQLLQQLEGKSLSYKMFARDTKASRSSGPATECFMFHARAAETKIRCNLEDYENCQRVMC 1295
            +QLLQQLE K LSYKMFARDTKASR+ GP TECFM+HARAAE +I C+  D+   + VMC
Sbjct: 315  NQLLQQLERKLLSYKMFARDTKASRNIGPPTECFMYHARAAEARIPCS--DHGEGREVMC 372

Query: 1296 VELVANRFLRKMVRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXXDGLCLLNVG 1475
            VELVANRFLRKMVRVLVAT+IREAAAGA++DAL+KLM              DGLCL++VG
Sbjct: 373  VELVANRFLRKMVRVLVATSIREAAAGAEEDALLKLMGATCRRATAPPAPPDGLCLVDVG 432

Query: 1476 YGEFKEKFCLI 1508
            Y EF  + CL+
Sbjct: 433  YTEFDPQNCLL 443


>ref|XP_002275354.2| PREDICTED: tRNA pseudouridine synthase A-like [Vitis vinifera]
          Length = 433

 Score =  428 bits (1101), Expect = e-117
 Identities = 229/425 (53%), Positives = 284/425 (66%)
 Frame = +3

Query: 237  EKSTKVYYHYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXXXXXXXXXXXXX 416
            EK  KVY HY HT   + SRW  RE +Q++Y RPW++V++FY N+V              
Sbjct: 17   EKENKVYVHYTHTHPTKFSRWTARESHQFMYKRPWQQVLDFYSNVVTGRCSLLGLLGIET 76

Query: 417  XENHRPADTVEDFHSDRDISTEVTEPVKARTGRWERITFKIVLSYHGWSFDGWQKQPGLH 596
               H   + VE   SD+     V    K R GRW R+TFKIVLSYHG SFDGWQKQPGL+
Sbjct: 77   HPIH-DGEIVEA--SDKTEFGNVL--TKDRGGRWARLTFKIVLSYHGASFDGWQKQPGLN 131

Query: 597  TVQGVVEQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQQVCSFYTWRKDVS 776
            TVQG+VE  LGRFVDE+KA+QLKE+++PVEG + VAGRTDKGVTALQQVCSFYTW+KDV 
Sbjct: 132  TVQGLVEASLGRFVDERKAQQLKEKNLPVEGMVTVAGRTDKGVTALQQVCSFYTWKKDVK 191

Query: 777  CGDIMHSINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLNDNEELITRCFEGHW 956
              DI  +IN  APGK+R + V+ VSR+FHPNF+A WR YFYI PLND ++   +  E   
Sbjct: 192  VQDIEDAINGAAPGKLRVISVSEVSRIFHPNFSAKWRHYFYIFPLNDGDD-GEQISENEM 250

Query: 957  SNSSIGCEDDQMNELQENHSVEKEQQLTFSHLNEDGCPGISELKPRSFSISKVDQLLQQL 1136
                I   +    +  E  +     + T + + +D     S  KP +FSIS+VDQLL+QL
Sbjct: 251  DIQKISFNEKYGEQGSECPAQYNGGENTENLIFDDDGEFESRKKPSTFSISRVDQLLRQL 310

Query: 1137 EGKSLSYKMFARDTKASRSSGPATECFMFHARAAETKIRCNLEDYENCQRVMCVELVANR 1316
            EGK LSYK+FARDTKASR+ GP TECF+FHARA E +++    D     +VMC+ELVANR
Sbjct: 311  EGKLLSYKIFARDTKASRNIGPPTECFVFHARATEARLQ--FSDDGEGTKVMCIELVANR 368

Query: 1317 FLRKMVRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXXDGLCLLNVGYGEFKEK 1496
            FLRKMVRVLVAT+IREAAAGA+ DAL+KLMD             DGLCL++VG+ EF  +
Sbjct: 369  FLRKMVRVLVATSIREAAAGAEQDALLKLMDATCRRATAPPAPPDGLCLIDVGFTEFDPQ 428

Query: 1497 FCLIR 1511
             C IR
Sbjct: 429  ICFIR 433


>ref|XP_006344572.1| PREDICTED: uncharacterized protein LOC102592314 [Solanum tuberosum]
          Length = 436

 Score =  427 bits (1097), Expect = e-117
 Identities = 218/421 (51%), Positives = 286/421 (67%), Gaps = 1/421 (0%)
 Frame = +3

Query: 249  KVYYHYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXXXXXXXXXXXXXXENH 428
            KV++HYNHTD+C+ SRW +RECY+++YAR W KVV+FY ++V                +H
Sbjct: 26   KVHFHYNHTDSCKFSRWTSRECYEFMYARLWHKVVDFYADMVKGHTSLSRLFGKETPADH 85

Query: 429  RPADTVEDFHSDRDISTEVTEPVKARTGRWERITFKIVLSYHGWSFDGWQKQPGLHTVQG 608
              A+  ED      ++  V +  + ++GRW R  F IVLSYHG SFDGWQKQP L+TVQG
Sbjct: 86   EDAEIREDHEKSELVNIPVKDKSRDKSGRWARANFMIVLSYHGGSFDGWQKQPDLNTVQG 145

Query: 609  VVEQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQQVCSFYTWRKDVSCGDI 788
            +VE+ LG FVDEKKA+ LK++++P+E C +VAGRTDKGV+A QQVCSFYTWRKDV   D+
Sbjct: 146  LVERSLGEFVDEKKAQLLKDKNLPLEACALVAGRTDKGVSASQQVCSFYTWRKDVKIEDV 205

Query: 789  MHSINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLNDNEELITRCFEGH-WSNS 965
              ++++ APGKIR + +T VSR FHPNF+A WR Y YI P++D   ++     G  W + 
Sbjct: 206  KAALDKAAPGKIRVVSLTKVSREFHPNFSAKWRHYLYIFPIDD---VLGEKQRGQIWIDG 262

Query: 966  SIGCEDDQMNELQENHSVEKEQQLTFSHLNEDGCPGISELKPRSFSISKVDQLLQQLEGK 1145
            S   +  Q NE  ++  ++K      + +N++    +   KP  F + KV++LL QLEGK
Sbjct: 263  S--TDVHQQNECGKS-DIDKS---NVNEINDENNELVHGNKPTKFEVGKVNRLLGQLEGK 316

Query: 1146 SLSYKMFARDTKASRSSGPATECFMFHARAAETKIRCNLEDYENCQRVMCVELVANRFLR 1325
             LSYKMFARDTKASR+ GP TECF+FHARA ET I C  +   +  + MC+ELVANRFLR
Sbjct: 317  LLSYKMFARDTKASRNIGPPTECFVFHARAIETSIPCAKDG--SLMKTMCIELVANRFLR 374

Query: 1326 KMVRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXXDGLCLLNVGYGEFKEKFCL 1505
            KMVRVLVATAIREAAAGADDDAL+KLMD             DGLCL++VGY ++  + CL
Sbjct: 375  KMVRVLVATAIREAAAGADDDALLKLMDATCRRATAPPAPPDGLCLVDVGYTDYDIRHCL 434

Query: 1506 I 1508
            I
Sbjct: 435  I 435


>gb|EMJ23926.1| hypothetical protein PRUPE_ppa006478mg [Prunus persica]
          Length = 409

 Score =  426 bits (1094), Expect = e-116
 Identities = 221/430 (51%), Positives = 282/430 (65%), Gaps = 10/430 (2%)
 Frame = +3

Query: 249  KVYYHYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXXXXXXXXXXXXXXENH 428
            KV   YNHTD C  +RW T+EC+Q++ ARPW++V++FY ++V                  
Sbjct: 4    KVLIQYNHTDPCSFARWTTKECFQFMSARPWQQVMDFYSDVVKDRKPLSALLGKACLSKS 63

Query: 429  RPADTVEDFHSDRDISTEVTEPVKARTGRWERITFKIVLSYHGWSFDGWQKQPGLHTVQG 608
               + +E     +D           + GRW R+TFKIV+SYHG SFDGWQ+QPGL+TVQ 
Sbjct: 64   NINNRLESLPPSQD-----------KGGRWARLTFKIVVSYHGGSFDGWQRQPGLNTVQS 112

Query: 609  VVEQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQQVCSFYTWRKDVSCGDI 788
            VVE+ LG+FVDE+KA+ LK++ +P+EG  +VAGRTDKGVTA+ QVCSFYTWRKDV   DI
Sbjct: 113  VVEKSLGKFVDERKAQMLKDKGLPLEGAALVAGRTDKGVTAVHQVCSFYTWRKDVKSQDI 172

Query: 789  MHSINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLNDNEELITRCFEG------ 950
              +IN  APGK+R + VT VSR FHPNF A WR Y YI P ND E++      G      
Sbjct: 173  TDAINSAAPGKLRVVSVTEVSRAFHPNFTAKWRHYLYIFPFNDEEDMEQSNQSGENAQNF 232

Query: 951  ----HWSNSSIGCEDDQMNELQENHSVEKEQQLTFSHLNEDGCPGISELKPRSFSISKVD 1118
                ++     GC  DQ NE    + V  +        NED    +  LKPR F++S+V+
Sbjct: 233  KSLENYHEHKNGC--DQCNEANVGNLVIND--------NED----LETLKPREFTVSRVN 278

Query: 1119 QLLQQLEGKSLSYKMFARDTKASRSSGPATECFMFHARAAETKIRCNLEDYENCQRVMCV 1298
            QLLQ+LEGK LSYKMFARDTK SR+ GP TECF++HARA E+K+ C+  ++E  +RVMC+
Sbjct: 279  QLLQKLEGKLLSYKMFARDTKPSRNEGPPTECFLYHARAKESKLPCS--EHEKGRRVMCI 336

Query: 1299 ELVANRFLRKMVRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXXDGLCLLNVGY 1478
            ELVANRFLR+MVRVLVAT+IREAAAGAD+DAL+KLMD             DGLCL++VGY
Sbjct: 337  ELVANRFLRRMVRVLVATSIREAAAGADEDALLKLMDATCRRATAPPAPPDGLCLVDVGY 396

Query: 1479 GEFKEKFCLI 1508
             EF  + CLI
Sbjct: 397  EEFDPQDCLI 406


>ref|XP_004166389.1| PREDICTED: tRNA pseudouridine synthase A-like [Cucumis sativus]
          Length = 444

 Score =  424 bits (1091), Expect = e-116
 Identities = 230/425 (54%), Positives = 287/425 (67%), Gaps = 5/425 (1%)
 Frame = +3

Query: 249  KVYYHYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXXXXXXXXXXXXXXENH 428
            K Y HYNHTD CR +RW  RE YQ++Y RPW++V++FY + V                +H
Sbjct: 30   KDYLHYNHTDRCRSARWTARESYQFMYGRPWQEVLDFYSHAVNGRFSLSSLLGTEICRDH 89

Query: 429  RPADTVEDFHSDRDISTEVTEP-VKARTGRWERITFKIVLSYHGWSFDGWQKQPGLHTVQ 605
              A+T   ++S      E+    VK +TGRW R TFKIVLSY G SFDGWQKQPGL+TVQ
Sbjct: 90   DDAETPLIYNS-----AELNRAAVKDKTGRWARATFKIVLSYDGNSFDGWQKQPGLNTVQ 144

Query: 606  GVVEQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQQVCSFYTWRKDVSCGD 785
            G+VE+ LG+FVDEKKA+ LK++ +P+EGC +VAGRTDKGVTAL+QVCSFYTWR DV   D
Sbjct: 145  GLVERSLGKFVDEKKAQMLKDKCLPLEGCALVAGRTDKGVTALRQVCSFYTWRTDVKPQD 204

Query: 786  IMHSINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLNDNEELITRCFEGHWSNS 965
            I  SIN  APGK+R   V+ VSR+FHPNF+A WR+Y YILPLND E +        W N 
Sbjct: 205  IEDSINSAAPGKLRTSSVSQVSRIFHPNFSAKWRRYLYILPLNDGENM--EPDSTTWEN- 261

Query: 966  SIGCEDDQMNELQENHSVEKEQQLTFSHLNEDGCPGISEL----KPRSFSISKVDQLLQQ 1133
                E+ +     +  +   E+ +   H N    P   EL    KP++FSI++V+QLL++
Sbjct: 262  ---VENREEENFVKIEASNGEKCVDGIHDNLVLSPNDEELVSADKPQTFSITRVNQLLRK 318

Query: 1134 LEGKSLSYKMFARDTKASRSSGPATECFMFHARAAETKIRCNLEDYENCQRVMCVELVAN 1313
            LEGK LSYKMFARDTKASR+ GP TECF++HARAAET++ C LE     + VMCVELVAN
Sbjct: 319  LEGKLLSYKMFARDTKASRNEGPPTECFVYHARAAETRLPC-LEQGVG-RSVMCVELVAN 376

Query: 1314 RFLRKMVRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXXDGLCLLNVGYGEFKE 1493
            RFLRKMVRVLVATAIREAAAGA +DAL++LMD             DGL L++VGY +F  
Sbjct: 377  RFLRKMVRVLVATAIREAAAGAGEDALLELMDATCRRATAPPAPPDGLSLVDVGYTDFDS 436

Query: 1494 KFCLI 1508
            + C I
Sbjct: 437  QICFI 441


>ref|XP_004137363.1| PREDICTED: tRNA pseudouridine synthase A-like [Cucumis sativus]
          Length = 444

 Score =  424 bits (1091), Expect = e-116
 Identities = 230/425 (54%), Positives = 287/425 (67%), Gaps = 5/425 (1%)
 Frame = +3

Query: 249  KVYYHYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXXXXXXXXXXXXXXENH 428
            K Y HYNHTD CR +RW  RE YQ++Y RPW++V++FY + V                +H
Sbjct: 30   KDYLHYNHTDRCRSARWTARESYQFMYGRPWQEVLDFYSHAVNGRFSLSSLLGTEICRDH 89

Query: 429  RPADTVEDFHSDRDISTEVTEP-VKARTGRWERITFKIVLSYHGWSFDGWQKQPGLHTVQ 605
              A+T   ++S      E+    VK +TGRW R TFKIVLSY G SFDGWQKQPGL+TVQ
Sbjct: 90   DDAETPLIYNS-----AELNRAAVKDKTGRWARATFKIVLSYDGNSFDGWQKQPGLNTVQ 144

Query: 606  GVVEQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQQVCSFYTWRKDVSCGD 785
            G+VE+ LG+FVDEKKA+ LK++ +P+EGC +VAGRTDKGVTAL+QVCSFYTWR DV   D
Sbjct: 145  GLVERSLGKFVDEKKAQMLKDKCLPLEGCALVAGRTDKGVTALRQVCSFYTWRTDVKPQD 204

Query: 786  IMHSINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLNDNEELITRCFEGHWSNS 965
            I  SIN  APGK+R   V+ VSR+FHPNF+A WR+Y YILPLND E +        W N 
Sbjct: 205  IEDSINSAAPGKLRTSSVSQVSRIFHPNFSAKWRRYLYILPLNDGENM--EPDSTTWEN- 261

Query: 966  SIGCEDDQMNELQENHSVEKEQQLTFSHLNEDGCPGISEL----KPRSFSISKVDQLLQQ 1133
                E+ +     +  +   E+ +   H N    P   EL    KP++FSI++V+QLL++
Sbjct: 262  ---VENREEENFVKIEASNGEKCVDGIHDNLVLSPNDQELVSADKPQTFSITRVNQLLRK 318

Query: 1134 LEGKSLSYKMFARDTKASRSSGPATECFMFHARAAETKIRCNLEDYENCQRVMCVELVAN 1313
            LEGK LSYKMFARDTKASR+ GP TECF++HARAAET++ C LE     + VMCVELVAN
Sbjct: 319  LEGKLLSYKMFARDTKASRNEGPPTECFVYHARAAETRLPC-LEQGVG-RSVMCVELVAN 376

Query: 1314 RFLRKMVRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXXDGLCLLNVGYGEFKE 1493
            RFLRKMVRVLVATAIREAAAGA +DAL++LMD             DGL L++VGY +F  
Sbjct: 377  RFLRKMVRVLVATAIREAAAGAGEDALLELMDATCRRATAPPAPPDGLSLVDVGYTDFDS 436

Query: 1494 KFCLI 1508
            + C I
Sbjct: 437  QICFI 441


>emb|CBI33811.3| unnamed protein product [Vitis vinifera]
          Length = 402

 Score =  424 bits (1091), Expect = e-116
 Identities = 228/425 (53%), Positives = 280/425 (65%)
 Frame = +3

Query: 237  EKSTKVYYHYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXXXXXXXXXXXXX 416
            EK  KVY HY HT   + SRW  RE +Q++Y RPW++V++FY N+V              
Sbjct: 17   EKENKVYVHYTHTHPTKFSRWTARESHQFMYKRPWQQVLDFYSNVVTGRCSLLGLLGIET 76

Query: 417  XENHRPADTVEDFHSDRDISTEVTEPVKARTGRWERITFKIVLSYHGWSFDGWQKQPGLH 596
               H   + VE   SD+     V    K R GRW R+TFKIVLSYHG SFDGWQKQPGL+
Sbjct: 77   HPIH-DGEIVEA--SDKTEFGNVL--TKDRGGRWARLTFKIVLSYHGASFDGWQKQPGLN 131

Query: 597  TVQGVVEQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQQVCSFYTWRKDVS 776
            TVQG+VE  LGRFVDE+KA+QLKE+++PVEG + VAGRTDKGVTALQQVCSFYTW+KDV 
Sbjct: 132  TVQGLVEASLGRFVDERKAQQLKEKNLPVEGMVTVAGRTDKGVTALQQVCSFYTWKKDVK 191

Query: 777  CGDIMHSINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLNDNEELITRCFEGHW 956
              DI  +IN  APGK+R + V+ VSR+FHPNF+A WR YFYI PLND             
Sbjct: 192  VQDIEDAINGAAPGKLRVISVSEVSRIFHPNFSAKWRHYFYIFPLNDG------------ 239

Query: 957  SNSSIGCEDDQMNELQENHSVEKEQQLTFSHLNEDGCPGISELKPRSFSISKVDQLLQQL 1136
                     D   ++ EN      Q+++F+          +  KP +FSIS+VDQLL+QL
Sbjct: 240  ---------DDGEQISENEM--DIQKISFNE---------NRKKPSTFSISRVDQLLRQL 279

Query: 1137 EGKSLSYKMFARDTKASRSSGPATECFMFHARAAETKIRCNLEDYENCQRVMCVELVANR 1316
            EGK LSYK+FARDTKASR+ GP TECF+FHARA E +++    D     +VMC+ELVANR
Sbjct: 280  EGKLLSYKIFARDTKASRNIGPPTECFVFHARATEARLQ--FSDDGEGTKVMCIELVANR 337

Query: 1317 FLRKMVRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXXDGLCLLNVGYGEFKEK 1496
            FLRKMVRVLVAT+IREAAAGA+ DAL+KLMD             DGLCL++VG+ EF  +
Sbjct: 338  FLRKMVRVLVATSIREAAAGAEQDALLKLMDATCRRATAPPAPPDGLCLIDVGFTEFDPQ 397

Query: 1497 FCLIR 1511
             C IR
Sbjct: 398  ICFIR 402


>gb|AFW76096.1| pseudouridylate synthase [Zea mays]
          Length = 422

 Score =  424 bits (1090), Expect = e-116
 Identities = 224/437 (51%), Positives = 285/437 (65%), Gaps = 2/437 (0%)
 Frame = +3

Query: 204  TGSKRGCLSVMEKSTKVYYHYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXX 383
            T SK    +V     + + HY HTDAC   RW  +E Y+Y+YARPW +VV+FY  LV   
Sbjct: 22   TASKAAAAAV---ELEEHVHYKHTDACHQLRWTAKESYEYMYARPWSRVVDFYAELVRAG 78

Query: 384  XXXXXXXXXXXXE--NHRPADTVEDFHSDRDISTEVTEPVKARTGRWERITFKIVLSYHG 557
                        +  ++      E++ +  +  T  T   K R GRWER+TFK+V+SYHG
Sbjct: 79   AGAAGLAKLFGNDEKDYTLYTAGENYLTPSEKPTTTTFS-KGRGGRWERVTFKVVISYHG 137

Query: 558  WSFDGWQKQPGLHTVQGVVEQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQ 737
             SFDGWQKQPGL+TVQG+VE+ LG+FVDE+KAKQL+ RS+P+EGC +VAGRTDKGVTALQ
Sbjct: 138  GSFDGWQKQPGLNTVQGLVEKHLGQFVDERKAKQLEARSLPIEGCAIVAGRTDKGVTALQ 197

Query: 738  QVCSFYTWRKDVSCGDIMHSINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLND 917
            QVCSFYTWRKDV  GDI  +INE AP K++ L V+ VSR FHPNFAA WR+Y YI PL++
Sbjct: 198  QVCSFYTWRKDVKSGDIKGAINEAAPDKLKPLHVSEVSREFHPNFAAKWRRYMYIFPLDE 257

Query: 918  NEELITRCFEGHWSNSSIGCEDDQMNELQENHSVEKEQQLTFSHLNEDGCPGISELKPRS 1097
            + +LI                   + E Q + ++E  +                 +KP+S
Sbjct: 258  DADLI-------------------LGEAQSSKTLENSEH---------------NIKPQS 283

Query: 1098 FSISKVDQLLQQLEGKSLSYKMFARDTKASRSSGPATECFMFHARAAETKIRCNLEDYEN 1277
            F +SKVD++L+ L GK+LSYKMFARDT+ASRS GP TECFMFH+RAA  K+    ED++ 
Sbjct: 284  FDVSKVDEILKPLAGKTLSYKMFARDTQASRSVGPPTECFMFHSRAAVAKLHSANEDHKG 343

Query: 1278 CQRVMCVELVANRFLRKMVRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXXDGL 1457
               VMCVELVANRFLRKMVRVLVATAIREAAAGA  DAL+ LM+             +GL
Sbjct: 344  GMVVMCVELVANRFLRKMVRVLVATAIREAAAGAGADALLNLMEATDRRATAPPAPPEGL 403

Query: 1458 CLLNVGYGEFKEKFCLI 1508
            CL++VGY +F ++ C I
Sbjct: 404  CLVDVGYEDFDKQRCFI 420


>gb|ACF83621.1| unknown [Zea mays]
          Length = 414

 Score =  424 bits (1090), Expect = e-116
 Identities = 224/437 (51%), Positives = 285/437 (65%), Gaps = 2/437 (0%)
 Frame = +3

Query: 204  TGSKRGCLSVMEKSTKVYYHYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXX 383
            T SK    +V     + + HY HTDAC   RW  +E Y+Y+YARPW +VV+FY  LV   
Sbjct: 14   TASKAAAAAV---ELEEHVHYKHTDACHQLRWTAKESYEYMYARPWSRVVDFYAELVRAG 70

Query: 384  XXXXXXXXXXXXE--NHRPADTVEDFHSDRDISTEVTEPVKARTGRWERITFKIVLSYHG 557
                        +  ++      E++ +  +  T  T   K R GRWER+TFK+V+SYHG
Sbjct: 71   AGAAGLAKLFGNDEKDYTLYTAGENYLTPSEKPTTTTFS-KGRGGRWERVTFKVVISYHG 129

Query: 558  WSFDGWQKQPGLHTVQGVVEQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQ 737
             SFDGWQKQPGL+TVQG+VE+ LG+FVDE+KAKQL+ RS+P+EGC +VAGRTDKGVTALQ
Sbjct: 130  GSFDGWQKQPGLNTVQGLVEKHLGQFVDERKAKQLEARSLPIEGCAIVAGRTDKGVTALQ 189

Query: 738  QVCSFYTWRKDVSCGDIMHSINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLND 917
            QVCSFYTWRKDV  GDI  +INE AP K++ L V+ VSR FHPNFAA WR+Y YI PL++
Sbjct: 190  QVCSFYTWRKDVKSGDIKGAINEAAPDKLKPLHVSEVSREFHPNFAAKWRRYMYIFPLDE 249

Query: 918  NEELITRCFEGHWSNSSIGCEDDQMNELQENHSVEKEQQLTFSHLNEDGCPGISELKPRS 1097
            + +LI                   + E Q + ++E  +                 +KP+S
Sbjct: 250  DADLI-------------------LGEAQSSKTLENSEH---------------NIKPQS 275

Query: 1098 FSISKVDQLLQQLEGKSLSYKMFARDTKASRSSGPATECFMFHARAAETKIRCNLEDYEN 1277
            F +SKVD++L+ L GK+LSYKMFARDT+ASRS GP TECFMFH+RAA  K+    ED++ 
Sbjct: 276  FDVSKVDEILKPLAGKTLSYKMFARDTQASRSVGPPTECFMFHSRAAVAKLHSANEDHKG 335

Query: 1278 CQRVMCVELVANRFLRKMVRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXXDGL 1457
               VMCVELVANRFLRKMVRVLVATAIREAAAGA  DAL+ LM+             +GL
Sbjct: 336  GMVVMCVELVANRFLRKMVRVLVATAIREAAAGAGADALLNLMEATDRRATAPPAPPEGL 395

Query: 1458 CLLNVGYGEFKEKFCLI 1508
            CL++VGY +F ++ C I
Sbjct: 396  CLVDVGYEDFDKQRCFI 412


>dbj|BAD45865.1| pseudouridylate synthase-like [Oryza sativa Japonica Group]
          Length = 495

 Score =  424 bits (1089), Expect = e-116
 Identities = 228/415 (54%), Positives = 278/415 (66%), Gaps = 3/415 (0%)
 Frame = +3

Query: 261  HYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXXXXXXXXXXXXXX-ENHRPA 437
            HYNHTDAC   RW  +E Y+Y+YARPW +VV+FY  LV                EN    
Sbjct: 32   HYNHTDACHHLRWTAKESYEYMYARPWSRVVDFYAELVRTGAGAAGLADLFGKDENGYSL 91

Query: 438  DTV-EDFHSDRDISTEVTEPVKARTGRWERITFKIVLSYHGWSFDGWQKQPGLHTVQGVV 614
            DT  ED+ +  +  T  T+  K R GRWER+TFKIVLSYHG SFDGWQKQPGL+TVQG+V
Sbjct: 92   DTNGEDYTAPSENQTS-TKSSKDRGGRWERVTFKIVLSYHGGSFDGWQKQPGLNTVQGLV 150

Query: 615  EQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQQVCSFYTWRKDVSCGDIMH 794
            E+ LG+FVDEKKAKQL+ RS+P+EGC VVAGRTDKGVTALQQVCSFYTWRKDV   DI  
Sbjct: 151  EKHLGQFVDEKKAKQLEARSLPLEGCAVVAGRTDKGVTALQQVCSFYTWRKDVKSSDIKD 210

Query: 795  SINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLNDNEELITRCFEGHWSNSSIG 974
            +IN+ AP K+R L V+ VSR FHPNFAA WR+Y YI PL+++ +LI+             
Sbjct: 211  AINKAAPDKLRPLHVSQVSREFHPNFAAKWRRYLYIFPLDEDVKLIS------------- 257

Query: 975  CEDDQMNELQENHSVEKEQQLTFSHLNEDGCPGISELKPRSFSISKVDQLLQQLEGKSLS 1154
                   E Q   +VE  +                 +KP+SF + KVD++++QLEGKSLS
Sbjct: 258  ------GEEQSAKTVEGPE---------------CNIKPQSFDVGKVDKIIRQLEGKSLS 296

Query: 1155 YKMFARDTKASRSSGPATECFMFHARAAETKIRCNLED-YENCQRVMCVELVANRFLRKM 1331
            YKMFARDT+ASRS GP TECFMFH+RAA  K+    E+  E   R +C+ELVANRFLRKM
Sbjct: 297  YKMFARDTQASRSVGPPTECFMFHSRAAVAKLHTADENCEEGTTRAICIELVANRFLRKM 356

Query: 1332 VRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXXDGLCLLNVGYGEFKEK 1496
            VRVLVATAIREAAAGA++DAL+ LM+             DGLCL++VGY +F  +
Sbjct: 357  VRVLVATAIREAAAGAEEDALLNLMEATCRRATAPPAPPDGLCLVDVGYEDFNRQ 411


>ref|XP_006474334.1| PREDICTED: uncharacterized protein LOC102622951 [Citrus sinensis]
          Length = 454

 Score =  422 bits (1086), Expect = e-115
 Identities = 221/428 (51%), Positives = 286/428 (66%), Gaps = 8/428 (1%)
 Frame = +3

Query: 249  KVYYHYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXXXXXXXXXXXXXXEN- 425
            KVY HYNHTD+C+ +RW  +E Y+++ ARPW+ VV+FY ++V                  
Sbjct: 43   KVYVHYNHTDSCKFARWTAKESYEFMRARPWQDVVDFYSDIVSGRLTLSDLFGTERTRTS 102

Query: 426  --HRPADTVEDFHSDRDISTEVTEPVKARTGRWERITFKIVLSYHGWSFDGWQKQPGLHT 599
              H   + + +  +  D + +     +A +GRW R  FKIV+SYHG SFDGWQKQP L+T
Sbjct: 103  SIHNDENEIPEVEAGSDANED-----RAGSGRWARANFKIVVSYHGPSFDGWQKQPDLNT 157

Query: 600  VQGVVEQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQQVCSFYTWRKDVSC 779
            VQG+VE+CLG FVDEK+AK LKE+  P+EGC +VAGRTDKGVTALQQVCSFYTWRKDV  
Sbjct: 158  VQGLVEKCLGSFVDEKRAKLLKEKCKPLEGCALVAGRTDKGVTALQQVCSFYTWRKDVKP 217

Query: 780  GDIMHSINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLNDNEELITRCFEGHWS 959
             +I  +IN  APGKIR + V+ VSRVFHPNF+A WR+Y YI PLND E+           
Sbjct: 218  SEIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGEK----------R 267

Query: 960  NSSIGCEDDQMNELQENHSVEKEQQLTFSH-----LNEDGCPGISELKPRSFSISKVDQL 1124
              SI  E +  N    +++V K+    + +     +N++G  G  E KPR+F+I +V+ L
Sbjct: 268  EQSIDSEVEVEN-FHTSNNVGKQSNGCYENIENLLINDEGGFGSHE-KPRNFTICRVNLL 325

Query: 1125 LQQLEGKSLSYKMFARDTKASRSSGPATECFMFHARAAETKIRCNLEDYENCQRVMCVEL 1304
            LQ+LEGK LSYK FARDTKASR+ GP TECF++HARA E  + C + D+   ++VMCVEL
Sbjct: 326  LQRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEATLPCPVNDHGEGRKVMCVEL 385

Query: 1305 VANRFLRKMVRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXXDGLCLLNVGYGE 1484
            VANRFLRKMVRVLVAT +REAAAGAD+DAL+KL+D             +GLCL++VGY  
Sbjct: 386  VANRFLRKMVRVLVATLVREAAAGADEDALLKLVDATCRRATAPPAPPEGLCLVDVGYTN 445

Query: 1485 FKEKFCLI 1508
            F  +  LI
Sbjct: 446  FDPQNSLI 453


>ref|XP_006453182.1| hypothetical protein CICLE_v10008288mg [Citrus clementina]
            gi|557556408|gb|ESR66422.1| hypothetical protein
            CICLE_v10008288mg [Citrus clementina]
          Length = 447

 Score =  422 bits (1086), Expect = e-115
 Identities = 221/428 (51%), Positives = 286/428 (66%), Gaps = 8/428 (1%)
 Frame = +3

Query: 249  KVYYHYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXXXXXXXXXXXXXXEN- 425
            KVY HYNHTD+C+ +RW  +E Y+++ ARPW+ VV+FY ++V                  
Sbjct: 36   KVYVHYNHTDSCKFARWTAKESYEFMRARPWQDVVDFYSDIVSGRLTLSDLFGTERTRTS 95

Query: 426  --HRPADTVEDFHSDRDISTEVTEPVKARTGRWERITFKIVLSYHGWSFDGWQKQPGLHT 599
              H   + + +  +  D + +     +A +GRW R  FKIV+SYHG SFDGWQKQP L+T
Sbjct: 96   SIHNDENEIPEVEAGSDANED-----RAGSGRWARANFKIVVSYHGPSFDGWQKQPDLNT 150

Query: 600  VQGVVEQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQQVCSFYTWRKDVSC 779
            VQG+VE+CLG FVDEK+AK LKE+  P+EGC +VAGRTDKGVTALQQVCSFYTWRKDV  
Sbjct: 151  VQGLVEKCLGSFVDEKRAKLLKEKCKPLEGCALVAGRTDKGVTALQQVCSFYTWRKDVKP 210

Query: 780  GDIMHSINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLNDNEELITRCFEGHWS 959
             +I  +IN  APGKIR + V+ VSRVFHPNF+A WR+Y YI PLND E+           
Sbjct: 211  SEIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGEK----------R 260

Query: 960  NSSIGCEDDQMNELQENHSVEKEQQLTFSH-----LNEDGCPGISELKPRSFSISKVDQL 1124
              SI  E +  N    +++V K+    + +     +N++G  G  E KPR+F+I +V+ L
Sbjct: 261  EQSIDSEVEVEN-FHTSNNVGKQSNGCYENIENLLINDEGGFGSHE-KPRNFTICRVNLL 318

Query: 1125 LQQLEGKSLSYKMFARDTKASRSSGPATECFMFHARAAETKIRCNLEDYENCQRVMCVEL 1304
            LQ+LEGK LSYK FARDTKASR+ GP TECF++HARA E  + C + D+   ++VMCVEL
Sbjct: 319  LQRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEATLPCPVNDHGEGRKVMCVEL 378

Query: 1305 VANRFLRKMVRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXXDGLCLLNVGYGE 1484
            VANRFLRKMVRVLVAT +REAAAGAD+DAL+KL+D             +GLCL++VGY  
Sbjct: 379  VANRFLRKMVRVLVATLVREAAAGADEDALLKLVDATCRRATAPPAPPEGLCLVDVGYTN 438

Query: 1485 FKEKFCLI 1508
            F  +  LI
Sbjct: 439  FDPQNSLI 446