BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00010644
         (2468 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001105471.1| homeobox3 [Zea mays] gi|1143705|emb|CAA61909...   271   1e-69
tpg|DAA57633.1| TPA: putative homeodomain-like transcription fac...   267   2e-68
ref|XP_002458483.1| hypothetical protein SORBIDRAFT_03g034510 [S...   261   1e-66
gb|EMT16215.1| Homeobox protein HOX1A [Aegilops tauschii]             241   1e-60
ref|XP_004961485.1| PREDICTED: homeobox protein HOX1A-like [Seta...   214   1e-52
ref|XP_003569804.1| PREDICTED: homeobox protein HOX1A-like [Brac...   213   2e-52
tpg|DAA57634.1| TPA: putative homeodomain-like transcription fac...   212   5e-52
gb|AFW78854.1| putative homeodomain-like transcription factor su...   211   2e-51
ref|NP_001105918.1| HOX1B protein [Zea mays] gi|1648931|emb|CAA6...   211   2e-51
gb|AFW78862.1| putative homeodomain-like transcription factor su...   210   3e-51
ref|NP_001105447.1| homeobox protein HOX1A [Zea mays] gi|1170434...   207   2e-50
emb|CAB51951.1| homeodomain transcription factor [Zea mays]           207   2e-50
ref|XP_006643655.1| PREDICTED: homeobox protein HOX1A-like isofo...   204   1e-49
ref|XP_006643653.1| PREDICTED: homeobox protein HOX1A-like isofo...   204   1e-49
ref|XP_003566033.1| PREDICTED: homeobox protein HOX1A-like [Brac...   204   2e-49
dbj|BAC15622.1| PHD-finger family homeodomain protein [Oryza sat...   202   4e-49
ref|NP_001057214.1| Os06g0229300 [Oryza sativa Japonica Group] g...   202   4e-49
gb|EEC80271.1| hypothetical protein OsI_22252 [Oryza sativa Indi...   202   4e-49
gb|EAZ42623.1| hypothetical protein OsJ_27188 [Oryza sativa Japo...   202   4e-49
ref|NP_001105549.1| LOC542536 [Zea mays] gi|1143707|emb|CAA61910...   201   1e-48

>ref|NP_001105471.1| homeobox3 [Zea mays] gi|1143705|emb|CAA61909.1| Hox2a [Zea mays]
          Length = 1576

 Score =  271 bits (692), Expect = 1e-69
 Identities = 176/479 (36%), Positives = 247/479 (51%), Gaps = 4/479 (0%)
 Frame = -1

Query: 2468 ELERAKSEILRCKLRIRESMCHLDSLLSEGRPDENMFDN-DEIDYENIICATCDSKDLST 2292
            ELERAK+EIL+CKLRIRE+  ++DSLLS+G+ +E++FD+  +I  E+I CA C SKD+++
Sbjct: 424  ELERAKAEILQCKLRIREAFRNMDSLLSKGKLEESLFDSAGQISSEDIFCAICGSKDVTS 483

Query: 2291 DNDIILCDGSCERGFHQKCLSPPLQTHEIPPGDQGWLCPACDCKVDCFNLLNEFQGSTLT 2112
             NDIILCDG+C+RGFHQ CLSPPL T EIPPGD+GWLCPAC CK D  + LNE QGS L+
Sbjct: 484  QNDIILCDGACDRGFHQNCLSPPLLTEEIPPGDEGWLCPACVCKADYIDALNELQGSKLS 543

Query: 2111 IEDTWEKVFPEAAVIANGNNQLXXXXXXXXXXXXXXXXXDVEVAAXXXXXXXXXXXXXXX 1932
            I D+W KVFPEAA  ANG+ Q+                  V                   
Sbjct: 544  IHDSWVKVFPEAASTANGSKQVDASDLLPDHIKDSANLALVGTHMVNEIRFSEEDD---- 599

Query: 1931 XXXXXXXXSVGYNNVDVLGXXXXXXXXXXXXXXXXDPNKDDQNEGPASNESDFTSDSDEF 1752
                        +  D LG                D ++D  + G  S ESDFTSDSD F
Sbjct: 600  ------------SKADDLGLPSEDSGDGDFDPAGPDSSEDQND-GLNSEESDFTSDSDYF 646

Query: 1751 CLELSKRVNVDEVTSSQLDS--RMADCSQEGXXXXXXXXXXXRHPPM-VEADFDNSCPVP 1581
            C E++K    DEV++S L +     D  +              H  M +E + D   PVP
Sbjct: 647  CAEIAKSCGQDEVSASPLSNVINRTDRMKLRAYSRRSNEENHNHAFMDMELEQDIVLPVP 706

Query: 1580 KTRQQQRLDYEKLNDVSYXXXXXXXXXXXXXXXXXXXXXXXXXXXKRESASLSYGRSYSV 1401
              RQ +RLDY+KL D +Y                           + ES++ S    +S 
Sbjct: 707  SRRQVERLDYKKLYDEAY---------------------------EEESSNSSDEEEWSG 739

Query: 1400 NHQRNLSIKDMVDVPPLAMLNPDQQQVLEPAEKSTPKTQQYLNEQHINDHLHAENGNKTT 1221
                  S  D +D P        +    +   + TP+++ + +       +   NG  ++
Sbjct: 740  KELLEGSGTDSLDEPSSCKRLSRRAPAGQQNNELTPQSRPHGSNSEQKTEVLRSNG--SS 797

Query: 1220 STGKKSYAPHVNQRLEETFKQNQYPSQEVKGSLSKELGLTTTQIAKWFAKSRAKLRISA 1044
            STG+K Y P V Q+L+  F+++ YPS+E K +LS+ELGLT  Q++KWF+ +R   R+++
Sbjct: 798  STGRK-YDPEVTQKLKVHFEKDPYPSRETKENLSEELGLTFNQVSKWFSSTRHYSRVAS 855


>tpg|DAA57633.1| TPA: putative homeodomain-like transcription factor superfamily
            protein [Zea mays]
          Length = 1577

 Score =  267 bits (682), Expect = 2e-68
 Identities = 181/484 (37%), Positives = 248/484 (51%), Gaps = 9/484 (1%)
 Frame = -1

Query: 2468 ELERAKSEILRCKLRIRESMCHLDSLLSEGRPDENMFDN-DEIDYENIICATCDSKDLST 2292
            ELERAK+EIL+CKLRIRE+  ++DSLLS+G+ +E++FD+  +I  E+I CA C SKD+++
Sbjct: 424  ELERAKAEILQCKLRIREAFRNMDSLLSKGKLEESLFDSAGQISSEDIFCAICGSKDVTS 483

Query: 2291 DNDIILCDGSCERGFHQKCLSPPLQTHEIPPGDQGWLCPACDCKVDCFNLLNEFQGSTLT 2112
             NDIILCDG+C+RGFHQ CLSPPL T EIPPGD+GWLCPAC CK D  + LNE QGS L+
Sbjct: 484  QNDIILCDGACDRGFHQNCLSPPLLTEEIPPGDEGWLCPACVCKADYIDALNELQGSKLS 543

Query: 2111 IEDTWEKVFPEAAVIANGNNQLXXXXXXXXXXXXXXXXXDVEVAAXXXXXXXXXXXXXXX 1932
            I D+W KVFPEAA  ANG+ Q+                  V                   
Sbjct: 544  IHDSWVKVFPEAASTANGSKQVDASDLLPDHIKDSANLALVGTHMVNEIRFSEEDD---- 599

Query: 1931 XXXXXXXXSVGYNNVDVLGXXXXXXXXXXXXXXXXDPNKDDQNEGPASNESDFTSDSDEF 1752
                        +  D LG                D ++D  + G  S ESDFTSDSD F
Sbjct: 600  ------------SKADDLGLPSEDSGDGDFDPAGPDSSEDQND-GLNSEESDFTSDSDYF 646

Query: 1751 CLELSKRVNVDEVTSSQLDS--RMADCSQEGXXXXXXXXXXXRHPPM-VEADFDNSCPVP 1581
            C E++K    DEV++S L +     D  +              H  M +E + D   PVP
Sbjct: 647  CAEIAKSCGQDEVSASPLSNVINRTDRMKLRAYSRRSNEENHNHAFMDMELEQDIVLPVP 706

Query: 1580 KTRQQQRLDYEKLNDVSYXXXXXXXXXXXXXXXXXXXXXXXXXXXKRESASLSYGRSYSV 1401
              RQ +RLDY+KL D +Y                           + ES++ S    +S 
Sbjct: 707  SRRQVERLDYKKLYDEAY---------------------------EEESSNSSDEEEWSG 739

Query: 1400 NHQRNLSIKDMVD-----VPPLAMLNPDQQQVLEPAEKSTPKTQQYLNEQHINDHLHAEN 1236
                  S  D +D     V   +   P  QQ  E   +S P      N +   + L +  
Sbjct: 740  KELLEGSGTDSLDERLRPVKRCSRRAPAGQQNNELTPQSRPHGS---NSEQKTEVLRS-- 794

Query: 1235 GNKTTSTGKKSYAPHVNQRLEETFKQNQYPSQEVKGSLSKELGLTTTQIAKWFAKSRAKL 1056
             N ++STG+K Y P V Q+L+  F+++ YPS+E K +LS+ELGLT  Q++KWF+ +R   
Sbjct: 795  -NGSSSTGRK-YDPEVTQKLKVHFEKDPYPSRETKENLSEELGLTFNQVSKWFSSTRHYS 852

Query: 1055 RISA 1044
            R+++
Sbjct: 853  RVAS 856


>ref|XP_002458483.1| hypothetical protein SORBIDRAFT_03g034510 [Sorghum bicolor]
            gi|241930458|gb|EES03603.1| hypothetical protein
            SORBIDRAFT_03g034510 [Sorghum bicolor]
          Length = 1582

 Score =  261 bits (666), Expect = 1e-66
 Identities = 173/484 (35%), Positives = 243/484 (50%), Gaps = 9/484 (1%)
 Frame = -1

Query: 2468 ELERAKSEILRCKLRIRESMCHLDSLLSEGRPDENMFDN-DEIDYENIICATCDSKDLST 2292
            ELERAK EIL+CKLRIRE+  ++DSLLS+G+ +E++FD+  EI  E+I CA C SKD++ 
Sbjct: 429  ELERAKEEILQCKLRIREAFRNMDSLLSKGKLEESLFDSAGEISSEDIFCAVCGSKDVTL 488

Query: 2291 DNDIILCDGSCERGFHQKCLSPPLQTHEIPPGDQGWLCPACDCKVDCFNLLNEFQGSTLT 2112
             NDIILCDG+C+RGFHQ CL+PPL T +IPPGD+GWLCPAC CK D  + LNE QGS L+
Sbjct: 489  QNDIILCDGACDRGFHQNCLNPPLLTEDIPPGDEGWLCPACVCKADSIDALNELQGSKLS 548

Query: 2111 IEDTWEKVFPEAAVIANGNNQLXXXXXXXXXXXXXXXXXDVEVAAXXXXXXXXXXXXXXX 1932
            I D+WEKVFPEAA IANG+ Q+                   E                  
Sbjct: 549  IHDSWEKVFPEAASIANGSKQVDASDLLPDHIKDSDNLALAE----------------GH 592

Query: 1931 XXXXXXXXSVGYNNVDVLGXXXXXXXXXXXXXXXXDPNKDDQNEGPASNESDFTSDSDEF 1752
                    +      D LG                D ++D ++ G  S ESDFTSDSD+F
Sbjct: 593  MVNEVRFSAEDDTKADDLGLPSEDSGDGDFDPAGPDSSEDQKD-GLNSEESDFTSDSDDF 651

Query: 1751 CLELSKRVNVDEVTSSQLDSRMADCSQEGXXXXXXXXXXXRHPPMVEADFDNSCPVPKTR 1572
            C E++K    DEV +S L + +    +              H     A  D   PV   R
Sbjct: 652  CAEIAKSCGQDEVLASPLSNVINRTDRMKLRAAGNRSNEENHN---NAFMDMELPVSSRR 708

Query: 1571 QQQRLDYEKLNDVSYXXXXXXXXXXXXXXXXXXXXXXXXXXXKRESASLSYGRSYSVNHQ 1392
            Q + LDY+KL D +Y                           + ES++ S    +S    
Sbjct: 709  QVEPLDYKKLYDEAY---------------------------EEESSNSSDEEEWSGKEL 741

Query: 1391 RNLSIKDMVDVPPLAMLNPDQQQVLEPAEKSTPKTQQYLNEQHINDHLHAENGNKT---- 1224
               S  D +          ++ + ++   +  P  QQ  N +H       E+  KT    
Sbjct: 742  LEGSETDSLG---------ERLRPVKRCSRKAPAGQQ--NIEHTPQKFGPESEQKTEILR 790

Query: 1223 ----TSTGKKSYAPHVNQRLEETFKQNQYPSQEVKGSLSKELGLTTTQIAKWFAKSRAKL 1056
                +STG+K + P V Q+L+  F+++ YPS+E K +LS+ELGLT  Q+++WF+ +R   
Sbjct: 791  SNGSSSTGRK-FGPVVTQKLKVHFEKDPYPSRETKVNLSEELGLTFNQVSRWFSSTRHYS 849

Query: 1055 RISA 1044
            R+++
Sbjct: 850  RVAS 853


>gb|EMT16215.1| Homeobox protein HOX1A [Aegilops tauschii]
          Length = 1236

 Score =  241 bits (615), Expect = 1e-60
 Identities = 166/487 (34%), Positives = 239/487 (49%), Gaps = 19/487 (3%)
 Frame = -1

Query: 2468 ELERAKSEILRCKLRIRESMCHLDSLLSEGRPDENMFDND-EIDYENIICATCDSKDLST 2292
            ELERAK EI+RCKLRIRE+  +LD LL+ G+ +E++FD++ +I  ++I+CATC  ++ + 
Sbjct: 192  ELERAKVEIVRCKLRIREAFQNLDHLLTVGKLEESLFDSEGKISSDDIVCATCSLQEATL 251

Query: 2291 DNDIILCDGSCERGFHQKCLSPPLQTHEIPPGDQGWLCPACDCKVDCFNLLNEFQGSTLT 2112
            +NDIILCDG+C+RGFHQ CL+PPL T +IP G++GWLCPACDCK+DC  L+NE QG+ L 
Sbjct: 252  NNDIILCDGACDRGFHQNCLNPPLLTKDIPEGEEGWLCPACDCKIDCIELINELQGTDLD 311

Query: 2111 IEDTWEKVFPEAAVIANG--NNQLXXXXXXXXXXXXXXXXXDVEVAAXXXXXXXXXXXXX 1938
            I D+WEKVFPEA+ +A+G   N +                   E  A             
Sbjct: 312  INDSWEKVFPEASAVAHGPMQNDVADLPSDDSEDDDFDPNISEEHVAGHAEGSSEEDGDE 371

Query: 1937 XXXXXXXXXXSVGYNN--------VDVLGXXXXXXXXXXXXXXXXDPNKDDQNEGPASNE 1782
                      +   N+        VD LG                D +KD + +   S+ 
Sbjct: 372  GSDSDDSNFMTSSDNSEHVKEKVKVDDLGLPSEDSEDDDYDPAGPDSDKDIEEKQDESD- 430

Query: 1781 SDFTSDSDEFCLELSKRVNVDEVTSSQLDSRMADCSQEGXXXXXXXXXXXRHPPMVEADF 1602
              FTSDSDEFC E++K  + DEV+S     ++   + +             H   +E D 
Sbjct: 431  --FTSDSDEFCAEITKSCSKDEVSSG---PKVGGRTNDLEGAPVRPNTSMSHSKDLEIDP 485

Query: 1601 DNSCPVPKTRQQQRLDYEKLNDVSYXXXXXXXXXXXXXXXXXXXXXXXXXXXKRESASLS 1422
            D   P  K RQ QRLDY+KL D +Y                               +  S
Sbjct: 486  DVILPSTK-RQVQRLDYKKLYDDTY---------------------------GEAPSESS 517

Query: 1421 YGRSYSVNHQRNLSIKDMVDVPPLAMLNPDQQQVLEPAEKSTPKTQQ--------YLNEQ 1266
             G  +S                 L   N ++ +V   A KS+  T++         +N+Q
Sbjct: 518  DGDEWS-------------GKSTLKEENEERNEVDSFARKSSRGTREVHPDGFHGLVNDQ 564

Query: 1265 HINDHLHAENGNKTTSTGKKSYAPHVNQRLEETFKQNQYPSQEVKGSLSKELGLTTTQIA 1086
            H    L ++  N  +   K+ + P +N+RL + F  +QYPS+ VK SL++ELGLT  Q+ 
Sbjct: 565  HAGG-LTSDGSN--SKAKKRHFGPVINERLNQYFTTDQYPSRAVKESLAQELGLTFRQVN 621

Query: 1085 KWFAKSR 1065
            KWF  +R
Sbjct: 622  KWFESTR 628



 Score = 72.0 bits (175), Expect = 1e-09
 Identities = 43/104 (41%), Positives = 59/104 (56%), Gaps = 4/104 (3%)
 Frame = -1

Query: 1298 TPKTQQYLNEQHIN----DHLHAENGNKTTSTGKKSYAPHVNQRLEETFKQNQYPSQEVK 1131
            TP+  Q      +N    + L   NG+ TT   K+ Y P +NQRL E FK +QYPS+ VK
Sbjct: 1024 TPQRSQQSFHGSVNGQNAEELLTPNGSSTTGQ-KRQYGPIINQRLHEQFKSDQYPSRAVK 1082

Query: 1130 GSLSKELGLTTTQIAKWFAKSRAKLRISATGLKLSDTVYHAETK 999
             SL++ELGLT  Q+ KWF   R  +R+++   K S  V +  TK
Sbjct: 1083 ESLAQELGLTFRQVEKWFESRRRHIRVASK--KSSTHVENHSTK 1124


>ref|XP_004961485.1| PREDICTED: homeobox protein HOX1A-like [Setaria italica]
          Length = 741

 Score =  214 bits (545), Expect = 1e-52
 Identities = 95/141 (67%), Positives = 122/141 (86%), Gaps = 1/141 (0%)
 Frame = -1

Query: 2468 ELERAKSEILRCKLRIRESMCHLDSLLSEGRPDENMFDND-EIDYENIICATCDSKDLST 2292
            ELERAK+EILRCKLRIRE   +LDSLLS+G+ DE++FD++ EI  E+I CA C SKD++ 
Sbjct: 168  ELERAKAEILRCKLRIREVFQNLDSLLSKGKIDESLFDSEGEISCEDIFCANCGSKDVTL 227

Query: 2291 DNDIILCDGSCERGFHQKCLSPPLQTHEIPPGDQGWLCPACDCKVDCFNLLNEFQGSTLT 2112
             NDIILCDG+C+RGFHQ CL+PPL+T +IP GD+GWLCPACDCK+DC +++N+ QGS L+
Sbjct: 228  GNDIILCDGACDRGFHQNCLNPPLRTEDIPEGDEGWLCPACDCKIDCIDVINDLQGSDLS 287

Query: 2111 IEDTWEKVFPEAAVIANGNNQ 2049
            I+D+WEKVFPEAA +ANG+NQ
Sbjct: 288  IDDSWEKVFPEAATMANGSNQ 308



 Score = 95.5 bits (236), Expect = 1e-16
 Identities = 77/263 (29%), Positives = 111/263 (42%)
 Frame = -1

Query: 1820 NKDDQNEGPASNESDFTSDSDEFCLELSKRVNVDEVTSSQLDSRMADCSQEGXXXXXXXX 1641
            +KD Q +   S+ESDFTSDSD+FC E++K    DEV+S  L     D   E         
Sbjct: 399  DKDIQKKESNSDESDFTSDSDDFCEEIAKTGGHDEVSSPPLPDGKVD-DMEKSTSQANTA 457

Query: 1640 XXXRHPPMVEADFDNSCPVPKTRQQQRLDYEKLNDVSYXXXXXXXXXXXXXXXXXXXXXX 1461
                 P   E D     PV   RQ +RLDY+KL D +Y                      
Sbjct: 458  NSNDDPMETEMDQSVVLPVSGRRQTERLDYKKLYDEAYGEAPSNSSDDEEWSGKSTPRKG 517

Query: 1460 XXXXXKRESASLSYGRSYSVNHQRNLSIKDMVDVPPLAMLNPDQQQVLEPAEKSTPKTQQ 1281
                     A  S   +  V+H   L+                     + A+KS      
Sbjct: 518  HEESEADSPAGKSSRSTRIVHHSDELT--------------------PQSAQKSLHPDSL 557

Query: 1280 YLNEQHINDHLHAENGNKTTSTGKKSYAPHVNQRLEETFKQNQYPSQEVKGSLSKELGLT 1101
            + +    ++ L +   N T+  G   + P +NQ+L E FK   YPS+ VK +L++ELGLT
Sbjct: 558  HGSVDEKHEDLTSNGSNSTSKKG--HFGPVINQKLHEHFKTEPYPSRSVKENLAEELGLT 615

Query: 1100 TTQIAKWFAKSRAKLRISATGLK 1032
              Q++KWF +SR     +A+ +K
Sbjct: 616  FRQVSKWF-ESRRHFTRAASSMK 637


>ref|XP_003569804.1| PREDICTED: homeobox protein HOX1A-like [Brachypodium distachyon]
          Length = 861

 Score =  213 bits (543), Expect = 2e-52
 Identities = 95/142 (66%), Positives = 123/142 (86%), Gaps = 1/142 (0%)
 Frame = -1

Query: 2468 ELERAKSEILRCKLRIRESMCHLDSLLSEGRPDENMFDND-EIDYENIICATCDSKDLST 2292
            EL+RAK+EILRCKLRIRE+  ++DSLLSEG+ +E++FD++ EI  E+I CA C SK ++ 
Sbjct: 195  ELQRAKAEILRCKLRIREAFQNMDSLLSEGKLEESLFDSEGEISSEDIFCAICGSKHVTL 254

Query: 2291 DNDIILCDGSCERGFHQKCLSPPLQTHEIPPGDQGWLCPACDCKVDCFNLLNEFQGSTLT 2112
             NDIILCDG+C RGFHQKCL+PPL   +IPPGD+GWLCPACDCK+DC ++LNE QGSTL+
Sbjct: 255  RNDIILCDGACVRGFHQKCLNPPLLAQDIPPGDEGWLCPACDCKLDCIDVLNELQGSTLS 314

Query: 2111 IEDTWEKVFPEAAVIANGNNQL 2046
            I D+WEKVFPE+A++ANG+NQ+
Sbjct: 315  IHDSWEKVFPESALLANGSNQI 336



 Score = 89.4 bits (220), Expect = 7e-15
 Identities = 80/288 (27%), Positives = 117/288 (40%), Gaps = 6/288 (2%)
 Frame = -1

Query: 1820 NKDDQNEGPASNESDFTSDSDEFCLELSKRVNVDEVTSSQLDSRMADCSQEGXXXXXXXX 1641
            + +DQ     S ESDFTSDSD+FC E++K    DEV+                       
Sbjct: 427  SSEDQKAKTNSEESDFTSDSDDFCAEIAKSCGQDEVSPPSSSDHADGIEISAVDNQLGQE 486

Query: 1640 XXXRHPPMVEADFDNSCPVPKTRQQQRLDYEKLNDVSYXXXXXXXXXXXXXXXXXXXXXX 1461
               R     E D D   PV   RQ +RLDY +L D +Y                      
Sbjct: 487  DNNRIIMETELDQDVVLPVSSRRQVERLDYRRLYDEAYGKEMSDSSDDEEWS-------- 538

Query: 1460 XXXXXKRESASLSYGRSYSVNHQRNLSIKD-MVDVPPLAMLNPDQQQVLEPAEKSTPKTQ 1284
                          G S S N   + S  D +      A ++  + Q      K TP+T 
Sbjct: 539  --------------GDSTSSNGNLDDSGTDSLAGSLQFAKIHSRRPQAGHQNNKHTPQTG 584

Query: 1283 QYLNEQHINDHLHAENGNKTTSTGKKSYAPHVNQRLEETFKQNQYPSQEVKGSLSKELGL 1104
            +          +   NG+ +TS  KK + P +NQ+L+   +++ YPS+  K SL++ELGL
Sbjct: 585  RCSVSTGQCSEVLYSNGSSSTSH-KKHFGPIINQKLKVHLEKDPYPSRPTKESLAQELGL 643

Query: 1103 TTTQIAKWFAKSRAKLRISATGLKLSDTVYHAE-----TKVQISEGNG 975
            T  Q+++WF+ +R   RI+    +     Y AE       +Q  E NG
Sbjct: 644  TFNQVSRWFSSARHYSRIAGAKKEKHPENYTAENDRTAADIQQREPNG 691


>tpg|DAA57634.1| TPA: putative homeodomain-like transcription factor superfamily
            protein, partial [Zea mays]
          Length = 683

 Score =  212 bits (540), Expect = 5e-52
 Identities = 118/260 (45%), Positives = 151/260 (58%), Gaps = 1/260 (0%)
 Frame = -1

Query: 2468 ELERAKSEILRCKLRIRESMCHLDSLLSEGRPDENMFDN-DEIDYENIICATCDSKDLST 2292
            ELERAK+EIL+CKLRIRE+  ++DSLLS+G+ +E++FD+  +I  E+I CA C SKD+++
Sbjct: 424  ELERAKAEILQCKLRIREAFRNMDSLLSKGKLEESLFDSAGQISSEDIFCAICGSKDVTS 483

Query: 2291 DNDIILCDGSCERGFHQKCLSPPLQTHEIPPGDQGWLCPACDCKVDCFNLLNEFQGSTLT 2112
             NDIILCDG+C+RGFHQ CLSPPL T EIPPGD+GWLCPAC CK D  + LNE QGS L+
Sbjct: 484  QNDIILCDGACDRGFHQNCLSPPLLTEEIPPGDEGWLCPACVCKADYIDALNELQGSKLS 543

Query: 2111 IEDTWEKVFPEAAVIANGNNQLXXXXXXXXXXXXXXXXXDVEVAAXXXXXXXXXXXXXXX 1932
            I D+W KVFPEAA  ANG+ Q+                  V                   
Sbjct: 544  IHDSWVKVFPEAASTANGSKQVDASDLLPDHIKDSANLALVGTHMVNEIRFSEEDD---- 599

Query: 1931 XXXXXXXXSVGYNNVDVLGXXXXXXXXXXXXXXXXDPNKDDQNEGPASNESDFTSDSDEF 1752
                        +  D LG                D ++D  + G  S ESDFTSDSD F
Sbjct: 600  ------------SKADDLGLPSEDSGDGDFDPAGPDSSEDQND-GLNSEESDFTSDSDYF 646

Query: 1751 CLELSKRVNVDEVTSSQLDS 1692
            C E++K    DEV++S L +
Sbjct: 647  CAEIAKSCGQDEVSASPLSN 666


>gb|AFW78854.1| putative homeodomain-like transcription factor superfamily protein
            [Zea mays]
          Length = 693

 Score =  211 bits (536), Expect = 2e-51
 Identities = 95/141 (67%), Positives = 119/141 (84%), Gaps = 1/141 (0%)
 Frame = -1

Query: 2468 ELERAKSEILRCKLRIRESMCHLDSLLSEGRPDENMFDND-EIDYENIICATCDSKDLST 2292
            ELERAKSEILRCKLRIRE   ++DSLLS+G+ DE++FD++ EI  E+I CATC SK+ + 
Sbjct: 164  ELERAKSEILRCKLRIREVFQNIDSLLSKGKIDESLFDSEGEISCEDIFCATCGSKNATL 223

Query: 2291 DNDIILCDGSCERGFHQKCLSPPLQTHEIPPGDQGWLCPACDCKVDCFNLLNEFQGSTLT 2112
             NDIILCDG+C+RGFHQ CL+PPL+T +IP GD+GWLCPACDCK+DC +L+NE QGS ++
Sbjct: 224  GNDIILCDGACDRGFHQNCLNPPLRTEDIPMGDEGWLCPACDCKLDCIDLINELQGSDIS 283

Query: 2111 IEDTWEKVFPEAAVIANGNNQ 2049
            IED WEKVFPEAA + NG+ Q
Sbjct: 284  IEDPWEKVFPEAAAMTNGSKQ 304


>ref|NP_001105918.1| HOX1B protein [Zea mays] gi|1648931|emb|CAA63156.1| HOX1B protein
            [Zea mays]
          Length = 692

 Score =  211 bits (536), Expect = 2e-51
 Identities = 95/141 (67%), Positives = 119/141 (84%), Gaps = 1/141 (0%)
 Frame = -1

Query: 2468 ELERAKSEILRCKLRIRESMCHLDSLLSEGRPDENMFDND-EIDYENIICATCDSKDLST 2292
            ELERAKSEILRCKLRIRE   ++DSLLS+G+ DE++FD++ EI  E+I CATC SK+ + 
Sbjct: 163  ELERAKSEILRCKLRIREVFQNIDSLLSKGKIDESLFDSEGEISCEDIFCATCGSKNATL 222

Query: 2291 DNDIILCDGSCERGFHQKCLSPPLQTHEIPPGDQGWLCPACDCKVDCFNLLNEFQGSTLT 2112
             NDIILCDG+C+RGFHQ CL+PPL+T +IP GD+GWLCPACDCK+DC +L+NE QGS ++
Sbjct: 223  GNDIILCDGACDRGFHQNCLNPPLRTEDIPMGDEGWLCPACDCKLDCIDLINELQGSDIS 282

Query: 2111 IEDTWEKVFPEAAVIANGNNQ 2049
            IED WEKVFPEAA + NG+ Q
Sbjct: 283  IEDPWEKVFPEAAAMTNGSKQ 303


>gb|AFW78862.1| putative homeodomain-like transcription factor superfamily protein
            [Zea mays]
          Length = 692

 Score =  210 bits (534), Expect = 3e-51
 Identities = 95/141 (67%), Positives = 119/141 (84%), Gaps = 1/141 (0%)
 Frame = -1

Query: 2468 ELERAKSEILRCKLRIRESMCHLDSLLSEGRPDENMFDND-EIDYENIICATCDSKDLST 2292
            ELERAKSEILRCKLRIRE   ++DSLLS+G+ DE++FD++ EI  E+I CATC SK+ + 
Sbjct: 163  ELERAKSEILRCKLRIREVFQNIDSLLSKGKIDESLFDSEGEISCEDIFCATCGSKNATL 222

Query: 2291 DNDIILCDGSCERGFHQKCLSPPLQTHEIPPGDQGWLCPACDCKVDCFNLLNEFQGSTLT 2112
             NDIILCDG+C+RGFHQ CL+PPL+T +IP GD+GWLCPACDCK+DC +L+NE QGS ++
Sbjct: 223  GNDIILCDGACDRGFHQNCLNPPLRTEDIPMGDEGWLCPACDCKLDCIDLINELQGSDIS 282

Query: 2111 IEDTWEKVFPEAAVIANGNNQ 2049
            IED WEKVFPEAA +AN + Q
Sbjct: 283  IEDPWEKVFPEAAAMANSSKQ 303


>ref|NP_001105447.1| homeobox protein HOX1A [Zea mays] gi|1170434|sp|P46605.1|HOX1A_MAIZE
            RecName: Full=Homeobox protein HOX1A
            gi|22331|emb|CAA47859.1| Zmhox1a homeobox protein [Zea
            mays]
          Length = 719

 Score =  207 bits (526), Expect = 2e-50
 Identities = 92/141 (65%), Positives = 117/141 (82%), Gaps = 1/141 (0%)
 Frame = -1

Query: 2468 ELERAKSEILRCKLRIRESMCHLDSLLSEGRPDENMFDND-EIDYENIICATCDSKDLST 2292
            ELERAKSEILRCKLRIRE   ++DSLLS+G+ DE +FD++ EI  E+I C+TC S D + 
Sbjct: 163  ELERAKSEILRCKLRIREVFRNIDSLLSKGKIDETLFDSEGEISCEDIFCSTCGSNDATL 222

Query: 2291 DNDIILCDGSCERGFHQKCLSPPLQTHEIPPGDQGWLCPACDCKVDCFNLLNEFQGSTLT 2112
             NDIILCDG+C+RGFHQ CL+PPL+T +IP GD+GWLCPACDCK+DC +L+NE  GS ++
Sbjct: 223  GNDIILCDGACDRGFHQNCLNPPLRTEDIPMGDEGWLCPACDCKIDCIDLINELHGSNIS 282

Query: 2111 IEDTWEKVFPEAAVIANGNNQ 2049
            IED+WEKVFP+AA +AN + Q
Sbjct: 283  IEDSWEKVFPDAAAMANDSKQ 303



 Score = 90.9 bits (224), Expect = 2e-15
 Identities = 79/266 (29%), Positives = 119/266 (44%), Gaps = 5/266 (1%)
 Frame = -1

Query: 1823 PNKD-DQNEGPASNESDFTSDSDEFCLELSKRVNVDEVTSSQL-DSRMADCSQEGXXXXX 1650
            P+ D D  +  +S+ESDFTSDSD+FC E+SK  + DEV+S  L D+++ D   E      
Sbjct: 386  PDSDKDVEKKSSSDESDFTSDSDDFCKEISKSGH-DEVSSPLLPDAKVGD--MEKITAQA 442

Query: 1649 XXXXXXRHPPMVEADFDNSCPVPKTRQQQRLDYEKLNDVSYXXXXXXXXXXXXXXXXXXX 1470
                    P   E D     P  + RQ +RLDY+KL D +Y                   
Sbjct: 443  KTTSSADDPMETEIDQGVVLPDSRRRQAERLDYKKLYDEAYG------------------ 484

Query: 1469 XXXXXXXXKRESASLSYGRSYSVNHQRNLSIKDMVDVPPLAMLNPDQQQVLEPAEKSTPK 1290
                        AS         + +    IK   +    +      + V    E +T  
Sbjct: 485  -----------EASSDSSDDEEWSGKNTPIIKSNEEGEANSPAGKGSRVVHHNDELTTQS 533

Query: 1289 TQQYLNEQH--INDHLHAENGNKTTSTGKKS-YAPHVNQRLEETFKQNQYPSQEVKGSLS 1119
            T++ L+  H  +++       N + ST +K  + P +NQ+L E FK   YPS+ VK SL+
Sbjct: 534  TKKSLHSIHGSVDEKPGDLTSNGSNSTARKGHFGPVINQKLHEHFKTQPYPSRSVKESLA 593

Query: 1118 KELGLTTTQIAKWFAKSRAKLRISAT 1041
            +ELGLT  Q+ KWF   R   R++++
Sbjct: 594  EELGLTFRQVNKWFETRRHSARVASS 619


>emb|CAB51951.1| homeodomain transcription factor [Zea mays]
          Length = 719

 Score =  207 bits (526), Expect = 2e-50
 Identities = 92/141 (65%), Positives = 117/141 (82%), Gaps = 1/141 (0%)
 Frame = -1

Query: 2468 ELERAKSEILRCKLRIRESMCHLDSLLSEGRPDENMFDND-EIDYENIICATCDSKDLST 2292
            ELERAKSEILRCKLRIRE   ++DSLLS+G+ DE +FD++ EI  E+I C+TC S D + 
Sbjct: 163  ELERAKSEILRCKLRIREVFRNIDSLLSKGKIDETLFDSEGEISCEDIFCSTCGSNDATL 222

Query: 2291 DNDIILCDGSCERGFHQKCLSPPLQTHEIPPGDQGWLCPACDCKVDCFNLLNEFQGSTLT 2112
             NDIILCDG+C+RGFHQ CL+PPL+T +IP GD+GWLCPACDCK+DC +L+NE  GS ++
Sbjct: 223  GNDIILCDGACDRGFHQNCLNPPLRTEDIPMGDEGWLCPACDCKIDCIDLINELHGSNIS 282

Query: 2111 IEDTWEKVFPEAAVIANGNNQ 2049
            IED+WEKVFP+AA +AN + Q
Sbjct: 283  IEDSWEKVFPDAAAMANDSKQ 303



 Score = 90.9 bits (224), Expect = 2e-15
 Identities = 79/266 (29%), Positives = 119/266 (44%), Gaps = 5/266 (1%)
 Frame = -1

Query: 1823 PNKD-DQNEGPASNESDFTSDSDEFCLELSKRVNVDEVTSSQL-DSRMADCSQEGXXXXX 1650
            P+ D D  +  +S+ESDFTSDSD+FC E+SK  + DEV+S  L D+++ D   E      
Sbjct: 386  PDSDKDVEKKSSSDESDFTSDSDDFCKEISKSGH-DEVSSPLLPDAKVGD--MEKITAQA 442

Query: 1649 XXXXXXRHPPMVEADFDNSCPVPKTRQQQRLDYEKLNDVSYXXXXXXXXXXXXXXXXXXX 1470
                    P   E D     P  + RQ +RLDY+KL D +Y                   
Sbjct: 443  KTTSSADDPMETEIDQGVVLPDSRRRQAERLDYKKLYDEAYG------------------ 484

Query: 1469 XXXXXXXXKRESASLSYGRSYSVNHQRNLSIKDMVDVPPLAMLNPDQQQVLEPAEKSTPK 1290
                        AS         + +    IK   +    +      + V    E +T  
Sbjct: 485  -----------EASSDSSDDEEWSGKNTPIIKSNEEGEANSPAGKGSRVVHHNDELTTQS 533

Query: 1289 TQQYLNEQH--INDHLHAENGNKTTSTGKKS-YAPHVNQRLEETFKQNQYPSQEVKGSLS 1119
            T++ L+  H  +++       N + ST +K  + P +NQ+L E FK   YPS+ VK SL+
Sbjct: 534  TKKSLHSIHGSVDEKPGDLTSNGSNSTARKGHFGPVINQKLHEHFKTQPYPSRSVKESLA 593

Query: 1118 KELGLTTTQIAKWFAKSRAKLRISAT 1041
            +ELGLT  Q+ KWF   R   R++++
Sbjct: 594  EELGLTFRQVNKWFETRRHSARVASS 619


>ref|XP_006643655.1| PREDICTED: homeobox protein HOX1A-like isoform X3 [Oryza brachyantha]
          Length = 814

 Score =  204 bits (520), Expect = 1e-49
 Identities = 94/142 (66%), Positives = 114/142 (80%), Gaps = 1/142 (0%)
 Frame = -1

Query: 2468 ELERAKSEILRCKLRIRESMCHLDSLLSEGRPDENMFDN-DEIDYENIICATCDSKDLST 2292
            ELERAK+EILRCKLRIRE+   LDSLLSEG+ +E++FD+  EI  E+I CA C SKD++ 
Sbjct: 198  ELERAKAEILRCKLRIREAFQSLDSLLSEGKLEESLFDSAGEISSEDIFCAICSSKDVTL 257

Query: 2291 DNDIILCDGSCERGFHQKCLSPPLQTHEIPPGDQGWLCPACDCKVDCFNLLNEFQGSTLT 2112
             NDIILCDG C+RGFHQ CL+PPL    IPPGD+GWLCPACDCK+DC ++LNE QG  L+
Sbjct: 258  KNDIILCDGICDRGFHQYCLNPPLLAEHIPPGDEGWLCPACDCKLDCIDVLNELQGVKLS 317

Query: 2111 IEDTWEKVFPEAAVIANGNNQL 2046
            I D+WEKVFPEAA   NG+ Q+
Sbjct: 318  IHDSWEKVFPEAASFVNGSKQI 339



 Score = 92.4 bits (228), Expect = 8e-16
 Identities = 70/266 (26%), Positives = 117/266 (43%), Gaps = 8/266 (3%)
 Frame = -1

Query: 1814 DDQNEGPASNESDFTSDSDEFCLELSKRVNVDEVTSSQLDSRMADCSQEGXXXXXXXXXX 1635
            DD++    S+ESDFTSDSD+FC E++K    DE +   L          G          
Sbjct: 434  DDESNSDQSDESDFTSDSDDFCAEIAKSCVQDETSGPSLSQIRTVDHTVGSAFDSEPTAE 493

Query: 1634 XRHPPMVEADFDNSC--PVPKTRQQQRLDYEKLNDVSYXXXXXXXXXXXXXXXXXXXXXX 1461
              +   +EA+ +     PV   RQ +RLDY++L D +Y                      
Sbjct: 494  NSNLAFMEAELEQDMVLPVSSKRQVERLDYKQLYDEAYGKASS----------------- 536

Query: 1460 XXXXXKRESASLSYGRSYSVNHQRNLSIKD---MVDVPPLAMLNPDQQQVLEPAEKSTPK 1290
                   +S+        S + + NL   +   + + P        +  V     + TP+
Sbjct: 537  -------DSSDDEEWSGDSAHQEENLEDSETDLLAESPQRGKNFTRRAAVRHQNNEHTPQ 589

Query: 1289 TQQY---LNEQHINDHLHAENGNKTTSTGKKSYAPHVNQRLEETFKQNQYPSQEVKGSLS 1119
              +    +++Q         NG+   +  K+ + P +NQ+L+E FK++ YPS+  K +L+
Sbjct: 590  NVRSGGSVSDQQTEVLCSDSNGS---AARKRHFGPAINQKLKEYFKEDPYPSRTTKENLA 646

Query: 1118 KELGLTTTQIAKWFAKSRAKLRISAT 1041
            +ELGLT  Q+ KWF+ +R   R++AT
Sbjct: 647  QELGLTFNQVTKWFSSTRHYSRVAAT 672


>ref|XP_006643653.1| PREDICTED: homeobox protein HOX1A-like isoform X1 [Oryza brachyantha]
            gi|573911872|ref|XP_006643654.1| PREDICTED: homeobox
            protein HOX1A-like isoform X2 [Oryza brachyantha]
          Length = 836

 Score =  204 bits (520), Expect = 1e-49
 Identities = 94/142 (66%), Positives = 114/142 (80%), Gaps = 1/142 (0%)
 Frame = -1

Query: 2468 ELERAKSEILRCKLRIRESMCHLDSLLSEGRPDENMFDN-DEIDYENIICATCDSKDLST 2292
            ELERAK+EILRCKLRIRE+   LDSLLSEG+ +E++FD+  EI  E+I CA C SKD++ 
Sbjct: 198  ELERAKAEILRCKLRIREAFQSLDSLLSEGKLEESLFDSAGEISSEDIFCAICSSKDVTL 257

Query: 2291 DNDIILCDGSCERGFHQKCLSPPLQTHEIPPGDQGWLCPACDCKVDCFNLLNEFQGSTLT 2112
             NDIILCDG C+RGFHQ CL+PPL    IPPGD+GWLCPACDCK+DC ++LNE QG  L+
Sbjct: 258  KNDIILCDGICDRGFHQYCLNPPLLAEHIPPGDEGWLCPACDCKLDCIDVLNELQGVKLS 317

Query: 2111 IEDTWEKVFPEAAVIANGNNQL 2046
            I D+WEKVFPEAA   NG+ Q+
Sbjct: 318  IHDSWEKVFPEAASFVNGSKQI 339



 Score = 92.4 bits (228), Expect = 8e-16
 Identities = 70/266 (26%), Positives = 117/266 (43%), Gaps = 8/266 (3%)
 Frame = -1

Query: 1814 DDQNEGPASNESDFTSDSDEFCLELSKRVNVDEVTSSQLDSRMADCSQEGXXXXXXXXXX 1635
            DD++    S+ESDFTSDSD+FC E++K    DE +   L          G          
Sbjct: 434  DDESNSDQSDESDFTSDSDDFCAEIAKSCVQDETSGPSLSQIRTVDHTVGSAFDSEPTAE 493

Query: 1634 XRHPPMVEADFDNSC--PVPKTRQQQRLDYEKLNDVSYXXXXXXXXXXXXXXXXXXXXXX 1461
              +   +EA+ +     PV   RQ +RLDY++L D +Y                      
Sbjct: 494  NSNLAFMEAELEQDMVLPVSSKRQVERLDYKQLYDEAYGKASS----------------- 536

Query: 1460 XXXXXKRESASLSYGRSYSVNHQRNLSIKD---MVDVPPLAMLNPDQQQVLEPAEKSTPK 1290
                   +S+        S + + NL   +   + + P        +  V     + TP+
Sbjct: 537  -------DSSDDEEWSGDSAHQEENLEDSETDLLAESPQRGKNFTRRAAVRHQNNEHTPQ 589

Query: 1289 TQQY---LNEQHINDHLHAENGNKTTSTGKKSYAPHVNQRLEETFKQNQYPSQEVKGSLS 1119
              +    +++Q         NG+   +  K+ + P +NQ+L+E FK++ YPS+  K +L+
Sbjct: 590  NVRSGGSVSDQQTEVLCSDSNGS---AARKRHFGPAINQKLKEYFKEDPYPSRTTKENLA 646

Query: 1118 KELGLTTTQIAKWFAKSRAKLRISAT 1041
            +ELGLT  Q+ KWF+ +R   R++AT
Sbjct: 647  QELGLTFNQVTKWFSSTRHYSRVAAT 672


>ref|XP_003566033.1| PREDICTED: homeobox protein HOX1A-like [Brachypodium distachyon]
          Length = 963

 Score =  204 bits (518), Expect = 2e-49
 Identities = 91/138 (65%), Positives = 117/138 (84%), Gaps = 1/138 (0%)
 Frame = -1

Query: 2468 ELERAKSEILRCKLRIRESMCHLDSLLSEGRPDENMFDND-EIDYENIICATCDSKDLST 2292
            ELERAK EI+RCKLRIRE+  +LDSLLS G+ DE++FDN+ +I  E+IICATC S+ ++ 
Sbjct: 181  ELERAKEEIVRCKLRIREAFQNLDSLLSMGKLDESLFDNEGKISCEDIICATCSSQYVTL 240

Query: 2291 DNDIILCDGSCERGFHQKCLSPPLQTHEIPPGDQGWLCPACDCKVDCFNLLNEFQGSTLT 2112
            +NDIILCDG C+RGFHQKCL+PPL T +IP GD+GWLCPACDCK+DC +++NE QG+ L+
Sbjct: 241  NNDIILCDGVCDRGFHQKCLNPPLLTKDIPAGDEGWLCPACDCKIDCIDVINELQGTNLS 300

Query: 2111 IEDTWEKVFPEAAVIANG 2058
            I D+WEKVFPE A +A+G
Sbjct: 301  ISDSWEKVFPETAALAHG 318



 Score = 80.5 bits (197), Expect = 3e-12
 Identities = 73/261 (27%), Positives = 107/261 (40%), Gaps = 2/261 (0%)
 Frame = -1

Query: 1820 NKDDQNEGPASNESDFTSDSDEFCLELSKRVNVDEVTSSQLDSRMADCSQEGXXXXXXXX 1641
            +KD + +  +SNESD++S SD+FC E++K    + V S            EG        
Sbjct: 603  DKDIEKKQSSSNESDYSSASDDFCGEIAKSCGREGVPSGAKAGGHPTNDLEGTTVRTNAA 662

Query: 1640 XXXRHPPMVEADFDNSCPVPKTRQQQRLDYEKLNDVSYXXXXXXXXXXXXXXXXXXXXXX 1461
                     + D D   PV   RQ Q LD +KL D                         
Sbjct: 663  ISNLPSKDSQMDQDVVSPVSGRRQDQSLDCKKLYDAC----------------------- 699

Query: 1460 XXXXXKRESAS-LSYGRSYSVNHQRNLSIKDMVDV-PPLAMLNPDQQQVLEPAEKSTPKT 1287
                  RE++S  S G  +S         +   D       +        + A +S  +T
Sbjct: 700  ------REASSDSSDGEDWSGKCTPEKDSEKQSDTCRRTGAVRQSNGSTPDNARQSLHRT 753

Query: 1286 QQYLNEQHINDHLHAENGNKTTSTGKKSYAPHVNQRLEETFKQNQYPSQEVKGSLSKELG 1107
                N QH  + L ++  + T    ++ + P + QRL E FK +QYP + VK SL+ ELG
Sbjct: 754  ----NGQHTEELLTSDGSSSTVH--RRQFGPIIYQRLHEHFKTDQYPKRAVKESLANELG 807

Query: 1106 LTTTQIAKWFAKSRAKLRISA 1044
            LT  Q++KWF   R K RI+A
Sbjct: 808  LTFQQVSKWFETRRYKTRIAA 828


>dbj|BAC15622.1| PHD-finger family homeodomain protein [Oryza sativa Japonica Group]
          Length = 698

 Score =  202 bits (515), Expect = 4e-49
 Identities = 94/142 (66%), Positives = 113/142 (79%), Gaps = 1/142 (0%)
 Frame = -1

Query: 2468 ELERAKSEILRCKLRIRESMCHLDSLLSEGRPDENMFDN-DEIDYENIICATCDSKDLST 2292
            ELERAK EILRCK RIRE+  +LDSLLSEG+ DE+MFD+  EI  E+I CA C SKD++ 
Sbjct: 198  ELERAKVEILRCKSRIREAFRNLDSLLSEGKLDESMFDSAGEISSEDIFCAACGSKDVTL 257

Query: 2291 DNDIILCDGSCERGFHQKCLSPPLQTHEIPPGDQGWLCPACDCKVDCFNLLNEFQGSTLT 2112
             NDIILCDG C+RGFHQ CL+PPL   +IP GD+GWLCPACDCK+DC ++LNE QG  L+
Sbjct: 258  KNDIILCDGICDRGFHQYCLNPPLLAEDIPQGDEGWLCPACDCKIDCIDVLNELQGVKLS 317

Query: 2111 IEDTWEKVFPEAAVIANGNNQL 2046
            I D+WEKVFPEAA   NG+ Q+
Sbjct: 318  IHDSWEKVFPEAASFLNGSKQI 339



 Score = 87.8 bits (216), Expect = 2e-14
 Identities = 66/267 (24%), Positives = 113/267 (42%), Gaps = 8/267 (2%)
 Frame = -1

Query: 1817 KDDQNEGPASNESDFTSDSDEFCLELSKRVNVDEVTSSQLDSRMADCSQEGXXXXXXXXX 1638
            ++D++    S+ESDFTSDSD+FC E++K    DE++             +G         
Sbjct: 431  QNDESNSDQSDESDFTSDSDDFCAEIAKSCGQDEISGPSSSQIRTVDRTDGSGFDGEPNA 490

Query: 1637 XXRHPPMVEADFDNSC--PVPKTRQQQRLDYEKLNDVSYXXXXXXXXXXXXXXXXXXXXX 1464
               +   +E + +     P+   RQ +RLDY+KL + +Y                     
Sbjct: 491  ENSNLAFMETELEQDMVLPISSKRQVERLDYKKLYNEAYGKASSDSSDDEEWYGNSTPEK 550

Query: 1463 XXXXXXKRESASLS------YGRSYSVNHQRNLSIKDMVDVPPLAMLNPDQQQVLEPAEK 1302
                  + +S + S      + R   V +  N       +V P   ++  Q +VL     
Sbjct: 551  GNLEDSETDSLAESPQGGKGFSRRAPVRYHNNEHTPQ--NVRPGGSVSDQQTEVL----- 603

Query: 1301 STPKTQQYLNEQHINDHLHAENGNKTTSTGKKSYAPHVNQRLEETFKQNQYPSQEVKGSL 1122
                                 N N +T+  +  + P +NQ+L+  FK++ YPS+  K +L
Sbjct: 604  -------------------CSNSNGSTAKNRH-FGPAINQKLKAHFKEDPYPSRATKENL 643

Query: 1121 SKELGLTTTQIAKWFAKSRAKLRISAT 1041
            ++ELGLT  Q+ KWF+ +R   R++AT
Sbjct: 644  AQELGLTFNQVTKWFSSTRHYARVAAT 670


>ref|NP_001057214.1| Os06g0229300 [Oryza sativa Japonica Group]
            gi|22830607|dbj|BAC15621.1| PHD-finger family homeodomain
            protein [Oryza sativa Japonica Group]
            gi|51535397|dbj|BAD37267.1| PHD-finger family homeodomain
            protein [Oryza sativa Japonica Group]
            gi|113595254|dbj|BAF19128.1| Os06g0229300 [Oryza sativa
            Japonica Group] gi|215768196|dbj|BAH00425.1| unnamed
            protein product [Oryza sativa Japonica Group]
            gi|284431756|gb|ADB84619.1| PHD-finger family homeodomain
            protein [Oryza sativa Japonica Group]
          Length = 792

 Score =  202 bits (515), Expect = 4e-49
 Identities = 94/142 (66%), Positives = 113/142 (79%), Gaps = 1/142 (0%)
 Frame = -1

Query: 2468 ELERAKSEILRCKLRIRESMCHLDSLLSEGRPDENMFDN-DEIDYENIICATCDSKDLST 2292
            ELERAK EILRCK RIRE+  +LDSLLSEG+ DE+MFD+  EI  E+I CA C SKD++ 
Sbjct: 198  ELERAKVEILRCKSRIREAFRNLDSLLSEGKLDESMFDSAGEISSEDIFCAACGSKDVTL 257

Query: 2291 DNDIILCDGSCERGFHQKCLSPPLQTHEIPPGDQGWLCPACDCKVDCFNLLNEFQGSTLT 2112
             NDIILCDG C+RGFHQ CL+PPL   +IP GD+GWLCPACDCK+DC ++LNE QG  L+
Sbjct: 258  KNDIILCDGICDRGFHQYCLNPPLLAEDIPQGDEGWLCPACDCKIDCIDVLNELQGVKLS 317

Query: 2111 IEDTWEKVFPEAAVIANGNNQL 2046
            I D+WEKVFPEAA   NG+ Q+
Sbjct: 318  IHDSWEKVFPEAASFLNGSKQI 339



 Score = 87.8 bits (216), Expect = 2e-14
 Identities = 66/267 (24%), Positives = 113/267 (42%), Gaps = 8/267 (2%)
 Frame = -1

Query: 1817 KDDQNEGPASNESDFTSDSDEFCLELSKRVNVDEVTSSQLDSRMADCSQEGXXXXXXXXX 1638
            ++D++    S+ESDFTSDSD+FC E++K    DE++             +G         
Sbjct: 431  QNDESNSDQSDESDFTSDSDDFCAEIAKSCGQDEISGPSSSQIRTVDRTDGSGFDGEPNA 490

Query: 1637 XXRHPPMVEADFDNSC--PVPKTRQQQRLDYEKLNDVSYXXXXXXXXXXXXXXXXXXXXX 1464
               +   +E + +     P+   RQ +RLDY+KL + +Y                     
Sbjct: 491  ENSNLAFMETELEQDMVLPISSKRQVERLDYKKLYNEAYGKASSDSSDDEEWYGNSTPEK 550

Query: 1463 XXXXXXKRESASLS------YGRSYSVNHQRNLSIKDMVDVPPLAMLNPDQQQVLEPAEK 1302
                  + +S + S      + R   V +  N       +V P   ++  Q +VL     
Sbjct: 551  GNLEDSETDSLAESPQGGKGFSRRAPVRYHNNEHTPQ--NVRPGGSVSDQQTEVL----- 603

Query: 1301 STPKTQQYLNEQHINDHLHAENGNKTTSTGKKSYAPHVNQRLEETFKQNQYPSQEVKGSL 1122
                                 N N +T+  +  + P +NQ+L+  FK++ YPS+  K +L
Sbjct: 604  -------------------CSNSNGSTAKNRH-FGPAINQKLKAHFKEDPYPSRATKENL 643

Query: 1121 SKELGLTTTQIAKWFAKSRAKLRISAT 1041
            ++ELGLT  Q+ KWF+ +R   R++AT
Sbjct: 644  AQELGLTFNQVTKWFSSTRHYARVAAT 670


>gb|EEC80271.1| hypothetical protein OsI_22252 [Oryza sativa Indica Group]
          Length = 830

 Score =  202 bits (515), Expect = 4e-49
 Identities = 94/142 (66%), Positives = 113/142 (79%), Gaps = 1/142 (0%)
 Frame = -1

Query: 2468 ELERAKSEILRCKLRIRESMCHLDSLLSEGRPDENMFDN-DEIDYENIICATCDSKDLST 2292
            ELERAK EILRCK RIRE+  +LDSLLSEG+ DE+MFD+  EI  E+I CA C SKD++ 
Sbjct: 236  ELERAKVEILRCKSRIREAFRNLDSLLSEGKLDESMFDSAGEISSEDIFCAACGSKDVTL 295

Query: 2291 DNDIILCDGSCERGFHQKCLSPPLQTHEIPPGDQGWLCPACDCKVDCFNLLNEFQGSTLT 2112
             NDIILCDG C+RGFHQ CL+PPL   +IP GD+GWLCPACDCK+DC ++LNE QG  L+
Sbjct: 296  KNDIILCDGICDRGFHQYCLNPPLLAEDIPQGDEGWLCPACDCKIDCIDVLNELQGVKLS 355

Query: 2111 IEDTWEKVFPEAAVIANGNNQL 2046
            I D+WEKVFPEAA   NG+ Q+
Sbjct: 356  IHDSWEKVFPEAASFLNGSKQI 377



 Score = 87.8 bits (216), Expect = 2e-14
 Identities = 66/267 (24%), Positives = 113/267 (42%), Gaps = 8/267 (2%)
 Frame = -1

Query: 1817 KDDQNEGPASNESDFTSDSDEFCLELSKRVNVDEVTSSQLDSRMADCSQEGXXXXXXXXX 1638
            ++D++    S+ESDFTSDSD+FC E++K    DE++             +G         
Sbjct: 469  QNDESNSDQSDESDFTSDSDDFCAEIAKSCGQDEISGPSSSQIRTVDRTDGSGFDGEPNA 528

Query: 1637 XXRHPPMVEADFDNSC--PVPKTRQQQRLDYEKLNDVSYXXXXXXXXXXXXXXXXXXXXX 1464
               +   +E + +     P+   RQ +RLDY+KL + +Y                     
Sbjct: 529  ENSNLAFMETELEQDMVLPISSKRQVERLDYKKLYNEAYGKASSDSSDDEEWYGNSTPEK 588

Query: 1463 XXXXXXKRESASLS------YGRSYSVNHQRNLSIKDMVDVPPLAMLNPDQQQVLEPAEK 1302
                  + +S + S      + R   V +  N       +V P   ++  Q +VL     
Sbjct: 589  GNLEDSETDSLAESPQGGKGFSRRAPVRYHNNEHTPQ--NVRPGGSVSDQQTEVL----- 641

Query: 1301 STPKTQQYLNEQHINDHLHAENGNKTTSTGKKSYAPHVNQRLEETFKQNQYPSQEVKGSL 1122
                                 N N +T+  +  + P +NQ+L+  FK++ YPS+  K +L
Sbjct: 642  -------------------CSNSNGSTAKNRH-FGPAINQKLKAHFKEDPYPSRATKENL 681

Query: 1121 SKELGLTTTQIAKWFAKSRAKLRISAT 1041
            ++ELGLT  Q+ KWF+ +R   R++AT
Sbjct: 682  AQELGLTFNQVTKWFSSTRHYARVAAT 708


>gb|EAZ42623.1| hypothetical protein OsJ_27188 [Oryza sativa Japonica Group]
          Length = 634

 Score =  202 bits (515), Expect = 4e-49
 Identities = 94/142 (66%), Positives = 113/142 (79%), Gaps = 1/142 (0%)
 Frame = -1

Query: 2468 ELERAKSEILRCKLRIRESMCHLDSLLSEGRPDENMFDN-DEIDYENIICATCDSKDLST 2292
            ELERAK EILRCK RIRE+  +LDSLLSEG+ DE+MFD+  EI  E+I CA C SKD++ 
Sbjct: 274  ELERAKVEILRCKSRIREAFRNLDSLLSEGKLDESMFDSAGEISSEDIFCAACGSKDVTL 333

Query: 2291 DNDIILCDGSCERGFHQKCLSPPLQTHEIPPGDQGWLCPACDCKVDCFNLLNEFQGSTLT 2112
             NDIILCDG C+RGFHQ CL+PPL   +IP GD+GWLCPACDCK+DC ++LNE QG  L+
Sbjct: 334  KNDIILCDGICDRGFHQYCLNPPLLAEDIPQGDEGWLCPACDCKIDCIDVLNELQGVKLS 393

Query: 2111 IEDTWEKVFPEAAVIANGNNQL 2046
            I D+WEKVFPEAA   NG+ Q+
Sbjct: 394  IHDSWEKVFPEAASFLNGSKQI 415


>ref|NP_001105549.1| LOC542536 [Zea mays] gi|1143707|emb|CAA61910.1| Hox2b [Zea mays]
          Length = 1539

 Score =  201 bits (511), Expect = 1e-48
 Identities = 93/142 (65%), Positives = 116/142 (81%), Gaps = 1/142 (0%)
 Frame = -1

Query: 2468 ELERAKSEILRCKLRIRESMCHLDSLLSEGRPDENMFDN-DEIDYENIICATCDSKDLST 2292
            ELERAK+EIL+CKLRIRE+  ++DSLLS+G+ +E++FD+  EI  E+I CA C SKD++ 
Sbjct: 427  ELERAKAEILQCKLRIREAFRNMDSLLSKGKLEESLFDSAGEISSEDIFCAVCGSKDVTL 486

Query: 2291 DNDIILCDGSCERGFHQKCLSPPLQTHEIPPGDQGWLCPACDCKVDCFNLLNEFQGSTLT 2112
             NDIILCDG+C+RGFHQ CL+PPL T +IPPGDQ WLCPAC CK D  + LNE QGS L+
Sbjct: 487  QNDIILCDGACDRGFHQNCLNPPLLTEDIPPGDQRWLCPACVCKADSIDALNELQGSKLS 546

Query: 2111 IEDTWEKVFPEAAVIANGNNQL 2046
            I D+WEKVFPEAA IANG+ Q+
Sbjct: 547  IHDSWEKVFPEAASIANGSKQV 568



 Score = 98.6 bits (244), Expect = 1e-17
 Identities = 71/262 (27%), Positives = 120/262 (45%), Gaps = 3/262 (1%)
 Frame = -1

Query: 1820 NKDDQNEGPASNESDFTSDSDEFCLELSKRVNVDEVTSSQLDSRMADCSQEGXXXXXXXX 1641
            + +DQ +G  S ESDFTSDSD+FC E++K    DEV++S L + +    +          
Sbjct: 627  SSEDQKDGLNSEESDFTSDSDDFCAEIAKSCGQDEVSASPLSNVINHTYRMKLRASNNRS 686

Query: 1640 XXXRHPPM---VEADFDNSCPVPKTRQQQRLDYEKLNDVSYXXXXXXXXXXXXXXXXXXX 1470
                H  +   +E   D   PV   RQ +RLDY+KL D +Y                   
Sbjct: 687  NEENHDHVFMDMELGQDMVLPVSSRRQVERLDYKKLYDEAY------------------- 727

Query: 1469 XXXXXXXXKRESASLSYGRSYSVNHQRNLSIKDMVDVPPLAMLNPDQQQVLEPAEKSTPK 1290
                     +ES++ S  + +S       S  D +   P  +    ++   E        
Sbjct: 728  --------GKESSNSSDDKEWSGKELLEGSETDSLSERPHPVKRCSRRAQAEQQNNEHTP 779

Query: 1289 TQQYLNEQHINDHLHAENGNKTTSTGKKSYAPHVNQRLEETFKQNQYPSQEVKGSLSKEL 1110
             ++ L+             N ++STG+K + P   Q+L+  F+++ YPS+E K ++S+EL
Sbjct: 780  QRERLHGSESEQKTGILRSNGSSSTGRK-FGPVATQKLKVHFEKDPYPSRETKENISEEL 838

Query: 1109 GLTTTQIAKWFAKSRAKLRISA 1044
            GLT  Q+++WF+ +R   R+++
Sbjct: 839  GLTFNQVSRWFSSTRHYSRVAS 860