BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00008806
         (892 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004978645.1| PREDICTED: DNA-directed RNA polymerases I, I...   263   5e-68
ref|XP_003576358.1| PREDICTED: uncharacterized protein LOC100836...   259   7e-67
ref|NP_001066119.1| Os12g0139500 [Oryza sativa Japonica Group] g...   258   2e-66
gb|ABA96407.2| RNA polymerase Rpb5, N-terminal domain containing...   258   2e-66
ref|NP_001065723.1| Os11g0143400 [Oryza sativa Japonica Group] g...   256   8e-66
ref|XP_006664324.1| PREDICTED: DNA-directed RNA polymerase V sub...   255   1e-65
ref|XP_006663193.1| PREDICTED: DNA-directed RNA polymerase V sub...   254   4e-65
gb|EAY79909.1| hypothetical protein OsI_35073 [Oryza sativa Indi...   253   5e-65
emb|CBX25377.1| hypothetical_protein [Oryza brachyantha]              247   4e-63
emb|CBX25472.1| hypothetical_protein [Oryza glaberrima]               246   8e-63
ref|XP_002450250.1| hypothetical protein SORBIDRAFT_05g002600 [S...   245   2e-62
dbj|BAJ92858.1| predicted protein [Hordeum vulgare subsp. vulgar...   244   3e-62
tpg|DAA39210.1| TPA: DNA-directed RNA polymerase II polypeptide ...   240   4e-61
gb|ACG37268.1| DNA-directed RNA polymerase II 23 kDa polypeptide...   240   4e-61
ref|NP_001141853.1| uncharacterized protein LOC100273995 [Zea ma...   240   4e-61
emb|CBI30093.3| unnamed protein product [Vitis vinifera]              232   1e-58
ref|XP_003632734.1| PREDICTED: DNA-directed RNA polymerases I, I...   232   1e-58
ref|XP_003577067.1| PREDICTED: DNA-directed RNA polymerases I, I...   231   3e-58
ref|XP_006364435.1| PREDICTED: DNA-directed RNA polymerase V sub...   226   9e-57
gb|EOY19924.1| RNA polymerase II fifth largest subunit, putative...   226   9e-57

>ref|XP_004978645.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Setaria italica]
          Length = 240

 Score =  263 bits (673), Expect = 5e-68
 Identities = 132/215 (61%), Positives = 169/215 (78%), Gaps = 1/215 (0%)
 Frame = +2

Query: 56  VPECLSSFVDRG-SVESHRYFLARRTLLEMIRDRGFPVPDDELALTLPSFRSKFGDKPKL 232
           VP C+SS +DRG SVESHR FLARRT LEM+RDRG+ VP+ ELA TLP FR+ + +KP+L
Sbjct: 27  VPACISSMIDRGGSVESHRLFLARRTALEMLRDRGYSVPEAELARTLPEFRAWWAEKPEL 86

Query: 233 DDLRISLSIPCKGSPPKKLLVIFFGTEPFKLSTLREMYGAVKQENLTNLILVLQSKMTSK 412
           + L  S ++    S   K+ V+F   EP K++ +RE+Y  V++ENL+ LIL+LQSK+TSK
Sbjct: 87  ERLAFSTALAADQS--SKVKVVFCPPEPVKIAVIREIYSRVQEENLSRLILILQSKITSK 144

Query: 413 ARDGVKEISKIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKKYNVGESQFPRML 592
           +R+ +KEI   KV+ FQITELLVNITKHVL PKHE+LT +EK  LLK+YNV +SQ PRML
Sbjct: 145 SRESIKEIFPFKVDTFQITELLVNITKHVLKPKHEVLTAEEKAKLLKEYNVVDSQLPRML 204

Query: 593 ESDPVSRYHGLKKGQIVKVTYEGELTGSHVTYRCV 697
           E+D V+RYHGL KG +VKVTY+ ELTG+HVTYRC+
Sbjct: 205 ETDAVARYHGLGKGTVVKVTYDSELTGNHVTYRCI 239


>ref|XP_003576358.1| PREDICTED: uncharacterized protein LOC100836489 [Brachypodium
           distachyon]
          Length = 468

 Score =  259 bits (663), Expect = 7e-67
 Identities = 125/214 (58%), Positives = 167/214 (78%)
 Frame = +2

Query: 56  VPECLSSFVDRGSVESHRYFLARRTLLEMIRDRGFPVPDDELALTLPSFRSKFGDKPKLD 235
           V  C+SS +D G  ESHR FLARRT LEM+RDR + VP+ +LA TLP FR+ + ++P++D
Sbjct: 256 VARCVSSMIDSGDPESHRLFLARRTALEMLRDRRYAVPEADLARTLPEFRAWWAERPEID 315

Query: 236 DLRISLSIPCKGSPPKKLLVIFFGTEPFKLSTLREMYGAVKQENLTNLILVLQSKMTSKA 415
             R+S S      P  K+ ++F   EPFK++ +RE+YG VK ENL+ LILVLQSK+TS+A
Sbjct: 316 --RLSFSTTLASDPSNKVQLVFCPPEPFKIAAIREVYGRVKDENLSCLILVLQSKITSRA 373

Query: 416 RDGVKEISKIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKKYNVGESQFPRMLE 595
           +D +KEI K KV++FQI ELLVN+TKHVL P+HE+LT +EK  LLKKYNV +SQ PRMLE
Sbjct: 374 KDAIKEIFKYKVDVFQIAELLVNVTKHVLKPEHEVLTPEEKAHLLKKYNVVDSQLPRMLE 433

Query: 596 SDPVSRYHGLKKGQIVKVTYEGELTGSHVTYRCV 697
           +D ++RY+GL KG +++VTY+GELTG+HVTYRC+
Sbjct: 434 TDAIARYYGLGKGTVLRVTYDGELTGNHVTYRCI 467


>ref|NP_001066119.1| Os12g0139500 [Oryza sativa Japonica Group]
           gi|113648626|dbj|BAF29138.1| Os12g0139500 [Oryza sativa
           Japonica Group] gi|125535725|gb|EAY82213.1| hypothetical
           protein OsI_37416 [Oryza sativa Indica Group]
           gi|125578454|gb|EAZ19600.1| hypothetical protein
           OsJ_35178 [Oryza sativa Japonica Group]
           gi|346703760|emb|CBX24428.1| hypothetical_protein [Oryza
           glaberrima]
          Length = 227

 Score =  258 bits (660), Expect = 2e-66
 Identities = 123/214 (57%), Positives = 167/214 (78%)
 Frame = +2

Query: 56  VPECLSSFVDRGSVESHRYFLARRTLLEMIRDRGFPVPDDELALTLPSFRSKFGDKPKLD 235
           VPEC++S +DRGSVESHR FLARRT +EM+RDRG+ VP+ E+A TLP FR+ + +KP ++
Sbjct: 15  VPECIASMIDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIE 74

Query: 236 DLRISLSIPCKGSPPKKLLVIFFGTEPFKLSTLREMYGAVKQENLTNLILVLQSKMTSKA 415
             R++ +      P KK+ ++F   EP K++T+RE+Y   K+ENL+ L+L+LQSK+ S+A
Sbjct: 75  --RLAFTTTLVSDPSKKVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRA 132

Query: 416 RDGVKEISKIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKKYNVGESQFPRMLE 595
           R+ +KEI K KV++FQ T+LLVNITKHVL PKHE+L+ D+K  LLK+YNV +SQ PRMLE
Sbjct: 133 REAIKEIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLE 192

Query: 596 SDPVSRYHGLKKGQIVKVTYEGELTGSHVTYRCV 697
           +D V+RY+G  KG +VKVTY+GELTG  V YRCV
Sbjct: 193 TDAVARYYGFDKGTVVKVTYDGELTGKRVAYRCV 226


>gb|ABA96407.2| RNA polymerase Rpb5, N-terminal domain containing protein,
           expressed [Oryza sativa Japonica Group]
          Length = 335

 Score =  258 bits (660), Expect = 2e-66
 Identities = 123/214 (57%), Positives = 167/214 (78%)
 Frame = +2

Query: 56  VPECLSSFVDRGSVESHRYFLARRTLLEMIRDRGFPVPDDELALTLPSFRSKFGDKPKLD 235
           VPEC++S +DRGSVESHR FLARRT +EM+RDRG+ VP+ E+A TLP FR+ + +KP ++
Sbjct: 123 VPECIASMIDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIE 182

Query: 236 DLRISLSIPCKGSPPKKLLVIFFGTEPFKLSTLREMYGAVKQENLTNLILVLQSKMTSKA 415
             R++ +      P KK+ ++F   EP K++T+RE+Y   K+ENL+ L+L+LQSK+ S+A
Sbjct: 183 --RLAFTTTLVSDPSKKVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRA 240

Query: 416 RDGVKEISKIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKKYNVGESQFPRMLE 595
           R+ +KEI K KV++FQ T+LLVNITKHVL PKHE+L+ D+K  LLK+YNV +SQ PRMLE
Sbjct: 241 REAIKEIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLE 300

Query: 596 SDPVSRYHGLKKGQIVKVTYEGELTGSHVTYRCV 697
           +D V+RY+G  KG +VKVTY+GELTG  V YRCV
Sbjct: 301 TDAVARYYGFDKGTVVKVTYDGELTGKRVAYRCV 334


>ref|NP_001065723.1| Os11g0143400 [Oryza sativa Japonica Group]
           gi|77548620|gb|ABA91417.1| RNA polymerase Rpb5,
           N-terminal domain containing protein, expressed [Oryza
           sativa Japonica Group] gi|113644427|dbj|BAF27568.1|
           Os11g0143400 [Oryza sativa Japonica Group]
           gi|125576186|gb|EAZ17408.1| hypothetical protein
           OsJ_32930 [Oryza sativa Japonica Group]
          Length = 227

 Score =  256 bits (654), Expect = 8e-66
 Identities = 122/214 (57%), Positives = 166/214 (77%)
 Frame = +2

Query: 56  VPECLSSFVDRGSVESHRYFLARRTLLEMIRDRGFPVPDDELALTLPSFRSKFGDKPKLD 235
           VPEC++S +DRGSVESHR FLARRT +EM+RDRG+ VP+ E+A TLP FR+ + +KP ++
Sbjct: 15  VPECIASMIDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIE 74

Query: 236 DLRISLSIPCKGSPPKKLLVIFFGTEPFKLSTLREMYGAVKQENLTNLILVLQSKMTSKA 415
             R++ +      P KK+ ++F   EP K++T+RE+Y   K+ENL+ L+L+LQSK+ S+A
Sbjct: 75  --RLAFTTTLVSDPSKKVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRA 132

Query: 416 RDGVKEISKIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKKYNVGESQFPRMLE 595
           R+ +KEI K KV++FQ T+LLVNITKHVL PKHE+L+ D+K  LLK+YNV +SQ PRMLE
Sbjct: 133 REAIKEIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLE 192

Query: 596 SDPVSRYHGLKKGQIVKVTYEGELTGSHVTYRCV 697
           +D V+RY+G  KG +VKV Y+GELTG  V YRCV
Sbjct: 193 TDAVARYYGFDKGTVVKVIYDGELTGKRVAYRCV 226


>ref|XP_006664324.1| PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Oryza
           brachyantha]
          Length = 283

 Score =  255 bits (652), Expect = 1e-65
 Identities = 124/215 (57%), Positives = 170/215 (79%), Gaps = 1/215 (0%)
 Frame = +2

Query: 56  VPECLSSFVDR-GSVESHRYFLARRTLLEMIRDRGFPVPDDELALTLPSFRSKFGDKPKL 232
           VP+C++S VDR GSVES R FLARRT LEM+RDRG+ VPD+E+A TLP FR+ +G+K ++
Sbjct: 70  VPDCIASMVDRSGSVESKRLFLARRTALEMLRDRGYSVPDEEIARTLPEFRAWWGEKSEI 129

Query: 233 DDLRISLSIPCKGSPPKKLLVIFFGTEPFKLSTLREMYGAVKQENLTNLILVLQSKMTSK 412
           +  R++ +      P KK+ ++F   EP K++T+RE+Y   + ENL+ LIL+LQS++ S+
Sbjct: 130 E--RLAFTTTLVSDPSKKVQIVFCPPEPVKIATIREIYRQTEGENLSRLILILQSRILSR 187

Query: 413 ARDGVKEISKIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKKYNVGESQFPRML 592
           AR+ +KEI K+KV++FQ+TELLVNITKHVL PKHE+L+  +K  LLK+YNV +SQ PRML
Sbjct: 188 ARESIKEIFKLKVDIFQVTELLVNITKHVLKPKHEVLSAAQKAKLLKQYNVEDSQLPRML 247

Query: 593 ESDPVSRYHGLKKGQIVKVTYEGELTGSHVTYRCV 697
           E+DPV+RY+GL KG +VKV Y+ ELTG+HV YRCV
Sbjct: 248 ETDPVARYYGLDKGTVVKVIYDSELTGNHVAYRCV 282


>ref|XP_006663193.1| PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Oryza
           brachyantha] gi|346703190|emb|CBX25289.1|
           hypothetical_protein [Oryza brachyantha]
          Length = 288

 Score =  254 bits (648), Expect = 4e-65
 Identities = 123/215 (57%), Positives = 170/215 (79%), Gaps = 1/215 (0%)
 Frame = +2

Query: 56  VPECLSSFVDR-GSVESHRYFLARRTLLEMIRDRGFPVPDDELALTLPSFRSKFGDKPKL 232
           VP+C++S VDR GSVES R FLARRT LEM+RDRG+ VP++E+A TLP FR+ +G+K ++
Sbjct: 75  VPDCIASMVDRSGSVESKRLFLARRTALEMLRDRGYSVPEEEIARTLPEFRAWWGEKSEI 134

Query: 233 DDLRISLSIPCKGSPPKKLLVIFFGTEPFKLSTLREMYGAVKQENLTNLILVLQSKMTSK 412
           +  R++ +      P KK+ ++F   EP K++T+RE+Y   + ENL+ LIL+LQS++ S+
Sbjct: 135 E--RLAFTTTLVSDPSKKVQIVFCPPEPVKIATIREIYRQTEGENLSRLILILQSRILSR 192

Query: 413 ARDGVKEISKIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKKYNVGESQFPRML 592
           AR+ +KEI K+KV++FQ+TELLVNITKHVL PKHE+L+  +K  LLK+YNV +SQ PRML
Sbjct: 193 ARESIKEIFKLKVDIFQVTELLVNITKHVLKPKHEVLSAAQKAKLLKQYNVEDSQLPRML 252

Query: 593 ESDPVSRYHGLKKGQIVKVTYEGELTGSHVTYRCV 697
           E+DPV+RY+GL KG +VKV Y+ ELTG+HV YRCV
Sbjct: 253 ETDPVARYYGLDKGTVVKVIYDSELTGNHVAYRCV 287


>gb|EAY79909.1| hypothetical protein OsI_35073 [Oryza sativa Indica Group]
          Length = 227

 Score =  253 bits (647), Expect = 5e-65
 Identities = 121/214 (56%), Positives = 165/214 (77%)
 Frame = +2

Query: 56  VPECLSSFVDRGSVESHRYFLARRTLLEMIRDRGFPVPDDELALTLPSFRSKFGDKPKLD 235
           VPEC++S +DRGSVESHR FLARRT +EM+RDRG+ VP+ E+A T P FR+ + +KP ++
Sbjct: 15  VPECIASMIDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTPPEFRAWWAEKPGIE 74

Query: 236 DLRISLSIPCKGSPPKKLLVIFFGTEPFKLSTLREMYGAVKQENLTNLILVLQSKMTSKA 415
             R++ +      P KK+ ++F   EP K++T+RE+Y   K+ENL+ L+L+LQSK+ S+A
Sbjct: 75  --RLAFTTTLVSDPSKKVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRA 132

Query: 416 RDGVKEISKIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKKYNVGESQFPRMLE 595
           R+ +KEI K KV++FQ T+LLVNITKHVL PKHE+L+ D+K  LLK+YNV +SQ PRMLE
Sbjct: 133 REAIKEIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLE 192

Query: 596 SDPVSRYHGLKKGQIVKVTYEGELTGSHVTYRCV 697
           +D V+RY+G  KG +VKV Y+GELTG  V YRCV
Sbjct: 193 TDAVARYYGFDKGTVVKVIYDGELTGKRVAYRCV 226


>emb|CBX25377.1| hypothetical_protein [Oryza brachyantha]
          Length = 226

 Score =  247 bits (631), Expect = 4e-63
 Identities = 123/215 (57%), Positives = 168/215 (78%), Gaps = 1/215 (0%)
 Frame = +2

Query: 56  VPECLSSFVDR-GSVESHRYFLARRTLLEMIRDRGFPVPDDELALTLPSFRSKFGDKPKL 232
           VP+C++S VDR GSVES R FLARRT LEM+RDRG+ VPD+E+A TLP FR+ +G+K ++
Sbjct: 15  VPDCIASMVDRSGSVESKRLFLARRTALEMLRDRGYSVPDEEIARTLPEFRAWWGEKSEI 74

Query: 233 DDLRISLSIPCKGSPPKKLLVIFFGTEPFKLSTLREMYGAVKQENLTNLILVLQSKMTSK 412
           +  R++ +      P KK+ ++F   EP K++T+RE+Y   + ENL+ LIL+LQS++ S+
Sbjct: 75  E--RLAFTTTLVSDPSKKVQIVFCPPEPVKIATIREIYRQTEGENLSRLILILQSRILSR 132

Query: 413 ARDGVKEISKIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKKYNVGESQFPRML 592
           AR+ +KEI K+KV++FQ  ELLVNITKHVL PKHE+L+  +K  LLK+YNV +SQ PRML
Sbjct: 133 ARESIKEIFKLKVDIFQ--ELLVNITKHVLKPKHEVLSAAQKAKLLKQYNVEDSQLPRML 190

Query: 593 ESDPVSRYHGLKKGQIVKVTYEGELTGSHVTYRCV 697
           E+DPV+RY+GL KG +VKV Y+ ELTG+HV YRCV
Sbjct: 191 ETDPVARYYGLDKGTVVKVIYDSELTGNHVAYRCV 225


>emb|CBX25472.1| hypothetical_protein [Oryza glaberrima]
          Length = 206

 Score =  246 bits (628), Expect = 8e-63
 Identities = 118/206 (57%), Positives = 160/206 (77%)
 Frame = +2

Query: 80  VDRGSVESHRYFLARRTLLEMIRDRGFPVPDDELALTLPSFRSKFGDKPKLDDLRISLSI 259
           +DRGSVESHR FLARRT +EM+RDRG+ VP+ E+A TLP FR+ + +KP ++  R++ + 
Sbjct: 2   IDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIE--RLAFTT 59

Query: 260 PCKGSPPKKLLVIFFGTEPFKLSTLREMYGAVKQENLTNLILVLQSKMTSKARDGVKEIS 439
                P KK+ ++F   EP K++T+RE+Y   K+ENL+ L+L+LQSK+ S+AR+ +KEI 
Sbjct: 60  TLVSDPSKKVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF 119

Query: 440 KIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKKYNVGESQFPRMLESDPVSRYH 619
           K KV++FQ T+LLVNITKHVL PKHE+L+ D+K  LLK+YNV +SQ PRMLE+D V+RY+
Sbjct: 120 KFKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLETDAVARYY 179

Query: 620 GLKKGQIVKVTYEGELTGSHVTYRCV 697
           G  KG +VKVTY+GELTG  V YRCV
Sbjct: 180 GFDKGTVVKVTYDGELTGKRVAYRCV 205


>ref|XP_002450250.1| hypothetical protein SORBIDRAFT_05g002600 [Sorghum bicolor]
           gi|241936093|gb|EES09238.1| hypothetical protein
           SORBIDRAFT_05g002600 [Sorghum bicolor]
          Length = 263

 Score =  245 bits (625), Expect = 2e-62
 Identities = 124/215 (57%), Positives = 161/215 (74%), Gaps = 1/215 (0%)
 Frame = +2

Query: 56  VPECLSSFVDRG-SVESHRYFLARRTLLEMIRDRGFPVPDDELALTLPSFRSKFGDKPKL 232
           V  C+S+ +D G SVES R FLARRT LEM+RDRG+ VP+DELA TLP FR+ + DKP+L
Sbjct: 50  VAACISAMLDLGGSVESKRLFLARRTALEMLRDRGYAVPEDELARTLPEFRAWWEDKPEL 109

Query: 233 DDLRISLSIPCKGSPPKKLLVIFFGTEPFKLSTLREMYGAVKQENLTNLILVLQSKMTSK 412
           +  R++ S      P  K+ V+F   EP K++ +R +Y  VK ENL+ LIL+LQ ++ SK
Sbjct: 110 E--RLAFSTTLASDPSSKVKVVFCPPEPVKIAAIRVVYTGVKDENLSRLILILQGRIMSK 167

Query: 413 ARDGVKEISKIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKKYNVGESQFPRML 592
           AR+ +KEI   KV+ FQITELLVNITKH L PKH++LT +EK  LLK+YNV +SQ PRML
Sbjct: 168 AREAIKEIFPYKVDTFQITELLVNITKHALKPKHQVLTAEEKAKLLKEYNVVDSQLPRML 227

Query: 593 ESDPVSRYHGLKKGQIVKVTYEGELTGSHVTYRCV 697
           E+D V+RY+GL KG +VKV Y+ ELTG+HVTYRC+
Sbjct: 228 ENDAVARYYGLGKGTVVKVIYDSELTGNHVTYRCI 262


>dbj|BAJ92858.1| predicted protein [Hordeum vulgare subsp. vulgare]
           gi|326531658|dbj|BAJ97833.1| predicted protein [Hordeum
           vulgare subsp. vulgare]
          Length = 251

 Score =  244 bits (623), Expect = 3e-62
 Identities = 123/217 (56%), Positives = 163/217 (75%), Gaps = 3/217 (1%)
 Frame = +2

Query: 56  VPECLSSFVDRGS---VESHRYFLARRTLLEMIRDRGFPVPDDELALTLPSFRSKFGDKP 226
           V  C+SS VD G    VES R FLARRT LEM+RDRG+ VP+DELA TLP FR+ + + P
Sbjct: 36  VAGCISSMVDLGGAAGVESQRLFLARRTALEMLRDRGYSVPEDELARTLPEFRAWWSETP 95

Query: 227 KLDDLRISLSIPCKGSPPKKLLVIFFGTEPFKLSTLREMYGAVKQENLTNLILVLQSKMT 406
           +++  R+S S      P  K+ ++F   EP K++ +RE++  +K+ENL+ LIL+LQSK+T
Sbjct: 96  EIE--RLSFSTTLASDPSSKVRIVFCPPEPVKIAAIREVHLRIKEENLSCLILILQSKIT 153

Query: 407 SKARDGVKEISKIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKKYNVGESQFPR 586
           ++AR+ +KEI K KV++FQITELLVNITKHVL P HE+LT +EK  LLK+YNV +SQ PR
Sbjct: 154 ARARESIKEIFKFKVDVFQITELLVNITKHVLKPNHEVLTAEEKAKLLKEYNVVDSQLPR 213

Query: 587 MLESDPVSRYHGLKKGQIVKVTYEGELTGSHVTYRCV 697
           MLE+D V+RY+GL KG +VK TY+ ELT  HVTYRC+
Sbjct: 214 MLETDAVARYYGLGKGTVVKFTYDNELTVDHVTYRCI 250


>tpg|DAA39210.1| TPA: DNA-directed RNA polymerase II polypeptide [Zea mays]
          Length = 263

 Score =  240 bits (613), Expect = 4e-61
 Identities = 122/215 (56%), Positives = 160/215 (74%), Gaps = 1/215 (0%)
 Frame = +2

Query: 56  VPECLSSFVDRG-SVESHRYFLARRTLLEMIRDRGFPVPDDELALTLPSFRSKFGDKPKL 232
           V  C+S+ +DRG SVESHR FLARRT LEM+RDRG+ VP++ELA TLP FR+ +  +P+L
Sbjct: 50  VAACISTMLDRGGSVESHRLFLARRTALEMLRDRGYAVPEEELARTLPEFRAWWEYRPEL 109

Query: 233 DDLRISLSIPCKGSPPKKLLVIFFGTEPFKLSTLREMYGAVKQENLTNLILVLQSKMTSK 412
           +  R++ S      P  K+ V+F    P K++ +R +Y  VK ENL+ LIL+LQ K+ S 
Sbjct: 110 E--RLAFSTTLTSDPSSKVKVVFCPPGPVKIAAIRLIYTEVKDENLSRLILILQGKIMST 167

Query: 413 ARDGVKEISKIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKKYNVGESQFPRML 592
            R+ +KEI + KV+ FQITELLVNITKHVL PKHE+LT + K  LLK+YNV +SQ PRML
Sbjct: 168 TRESIKEIFRFKVDTFQITELLVNITKHVLKPKHEVLTAEGKAKLLKEYNVVDSQLPRML 227

Query: 593 ESDPVSRYHGLKKGQIVKVTYEGELTGSHVTYRCV 697
           E+D V+RY+GL KG +VKV Y+ ELTG+HVTYRC+
Sbjct: 228 ENDAVARYYGLGKGTVVKVIYDSELTGNHVTYRCI 262


>gb|ACG37268.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Zea mays]
          Length = 264

 Score =  240 bits (613), Expect = 4e-61
 Identities = 122/215 (56%), Positives = 160/215 (74%), Gaps = 1/215 (0%)
 Frame = +2

Query: 56  VPECLSSFVDRG-SVESHRYFLARRTLLEMIRDRGFPVPDDELALTLPSFRSKFGDKPKL 232
           V  C+S+ +DRG SVESHR FLARRT LEM+RDRG+ VP++ELA TLP FR+ +  +P+L
Sbjct: 51  VAACISTMLDRGGSVESHRLFLARRTALEMLRDRGYAVPEEELARTLPEFRAWWEYRPEL 110

Query: 233 DDLRISLSIPCKGSPPKKLLVIFFGTEPFKLSTLREMYGAVKQENLTNLILVLQSKMTSK 412
           +  R++ S      P  K+ V+F    P K++ +R +Y  VK ENL+ LIL+LQ K+ S 
Sbjct: 111 E--RLAFSTTLASDPSSKVKVVFCPPGPVKIAAIRLIYTEVKDENLSRLILILQGKIMST 168

Query: 413 ARDGVKEISKIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKKYNVGESQFPRML 592
            R+ +KEI + KV+ FQITELLVNITKHVL PKHE+LT + K  LLK+YNV +SQ PRML
Sbjct: 169 TRESIKEIFRFKVDTFQITELLVNITKHVLKPKHEVLTAEGKAKLLKEYNVVDSQLPRML 228

Query: 593 ESDPVSRYHGLKKGQIVKVTYEGELTGSHVTYRCV 697
           E+D V+RY+GL KG +VKV Y+ ELTG+HVTYRC+
Sbjct: 229 ENDAVARYYGLGKGTVVKVIYDSELTGNHVTYRCI 263


>ref|NP_001141853.1| uncharacterized protein LOC100273995 [Zea mays]
           gi|194706176|gb|ACF87172.1| unknown [Zea mays]
          Length = 248

 Score =  240 bits (613), Expect = 4e-61
 Identities = 122/215 (56%), Positives = 160/215 (74%), Gaps = 1/215 (0%)
 Frame = +2

Query: 56  VPECLSSFVDRG-SVESHRYFLARRTLLEMIRDRGFPVPDDELALTLPSFRSKFGDKPKL 232
           V  C+S+ +DRG SVESHR FLARRT LEM+RDRG+ VP++ELA TLP FR+ +  +P+L
Sbjct: 35  VAACISTMLDRGGSVESHRLFLARRTALEMLRDRGYAVPEEELARTLPEFRAWWEYRPEL 94

Query: 233 DDLRISLSIPCKGSPPKKLLVIFFGTEPFKLSTLREMYGAVKQENLTNLILVLQSKMTSK 412
           +  R++ S      P  K+ V+F    P K++ +R +Y  VK ENL+ LIL+LQ K+ S 
Sbjct: 95  E--RLAFSTTLTSDPSSKVKVVFCPPGPVKIAAIRLIYTEVKDENLSRLILILQGKIMST 152

Query: 413 ARDGVKEISKIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKKYNVGESQFPRML 592
            R+ +KEI + KV+ FQITELLVNITKHVL PKHE+LT + K  LLK+YNV +SQ PRML
Sbjct: 153 TRESIKEIFRFKVDTFQITELLVNITKHVLKPKHEVLTAEGKAKLLKEYNVVDSQLPRML 212

Query: 593 ESDPVSRYHGLKKGQIVKVTYEGELTGSHVTYRCV 697
           E+D V+RY+GL KG +VKV Y+ ELTG+HVTYRC+
Sbjct: 213 ENDAVARYYGLGKGTVVKVIYDSELTGNHVTYRCI 247


>emb|CBI30093.3| unnamed protein product [Vitis vinifera]
          Length = 330

 Score =  232 bits (592), Expect = 1e-58
 Identities = 119/215 (55%), Positives = 159/215 (73%), Gaps = 1/215 (0%)
 Frame = +2

Query: 56  VPECLSSFVDRGSVESHRYFLARRTLLEMIRDRGFPVPDDELALTLPSFRSKFGDKPKLD 235
           V  CLSSFVD G +ESHRY+LARRTLLEM+RDRG+ +P  ++ ++L  FRS +  KP  D
Sbjct: 118 VKRCLSSFVDEGRIESHRYYLARRTLLEMLRDRGYSIPALDIDISLQDFRSFYSQKPDPD 177

Query: 236 DLRISLSIPCKGSPPKKLLVIFFGTEPFKLSTLREMYGA-VKQENLTNLILVLQSKMTSK 412
            LRIS ++  +  P KK+LVIF G +  K++ +R +    V +++L+ LILVLQ+ +TS+
Sbjct: 178 RLRISAAL--RSDPSKKILVIFCGPDVVKVNAIRSIATQIVNKDSLSKLILVLQNHITSQ 235

Query: 413 ARDGVKEISKIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKKYNVGESQFPRML 592
           A   V ++   +VE FQIT+LLVNITKHVL PKH +LT  EK  LLKKY++ E Q PRML
Sbjct: 236 ALKAV-DLFSFQVEKFQITDLLVNITKHVLKPKHRVLTDQEKNKLLKKYSLNEKQLPRML 294

Query: 593 ESDPVSRYHGLKKGQIVKVTYEGELTGSHVTYRCV 697
           + D ++RY+GL+KGQ+VKV Y GE+TGSHVTYRCV
Sbjct: 295 QQDAIARYYGLEKGQVVKVIYNGEITGSHVTYRCV 329


>ref|XP_003632734.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Vitis vinifera]
          Length = 229

 Score =  232 bits (592), Expect = 1e-58
 Identities = 119/215 (55%), Positives = 159/215 (73%), Gaps = 1/215 (0%)
 Frame = +2

Query: 56  VPECLSSFVDRGSVESHRYFLARRTLLEMIRDRGFPVPDDELALTLPSFRSKFGDKPKLD 235
           V  CLSSFVD G +ESHRY+LARRTLLEM+RDRG+ +P  ++ ++L  FRS +  KP  D
Sbjct: 17  VKRCLSSFVDEGRIESHRYYLARRTLLEMLRDRGYSIPALDIDISLQDFRSFYSQKPDPD 76

Query: 236 DLRISLSIPCKGSPPKKLLVIFFGTEPFKLSTLREMYGA-VKQENLTNLILVLQSKMTSK 412
            LRIS ++  +  P KK+LVIF G +  K++ +R +    V +++L+ LILVLQ+ +TS+
Sbjct: 77  RLRISAAL--RSDPSKKILVIFCGPDVVKVNAIRSIATQIVNKDSLSKLILVLQNHITSQ 134

Query: 413 ARDGVKEISKIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKKYNVGESQFPRML 592
           A   V ++   +VE FQIT+LLVNITKHVL PKH +LT  EK  LLKKY++ E Q PRML
Sbjct: 135 ALKAV-DLFSFQVEKFQITDLLVNITKHVLKPKHRVLTDQEKNKLLKKYSLNEKQLPRML 193

Query: 593 ESDPVSRYHGLKKGQIVKVTYEGELTGSHVTYRCV 697
           + D ++RY+GL+KGQ+VKV Y GE+TGSHVTYRCV
Sbjct: 194 QQDAIARYYGLEKGQVVKVIYNGEITGSHVTYRCV 228


>ref|XP_003577067.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Brachypodium distachyon]
          Length = 270

 Score =  231 bits (589), Expect = 3e-58
 Identities = 118/217 (54%), Positives = 159/217 (73%), Gaps = 3/217 (1%)
 Frame = +2

Query: 56  VPECLSSFVDRG---SVESHRYFLARRTLLEMIRDRGFPVPDDELALTLPSFRSKFGDKP 226
           V E ++S VDRG   S E H  FLARRT LEM+RDRG+ VP+ ELA TL  FR+ + +KP
Sbjct: 55  VVEWMASMVDRGGRASHEVHSLFLARRTALEMLRDRGYSVPEPELARTLTEFRAWWAEKP 114

Query: 227 KLDDLRISLSIPCKGSPPKKLLVIFFGTEPFKLSTLREMYGAVKQENLTNLILVLQSKMT 406
           ++   R+S S         K+  +F   +P  ++T+RE+Y  +++ENL+ LIL+LQ  +T
Sbjct: 115 EMR--RLSFSATFASDHSNKVQFVFCPPKPVNITTIREVYSQIEEENLSRLILILQGDIT 172

Query: 407 SKARDGVKEISKIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKKYNVGESQFPR 586
           SKARD +KEI   KV++FQ+TELLVNI+KH L PKHE+LT +EK +LLKKYN+ +S+ P 
Sbjct: 173 SKARDCIKEIFPFKVDIFQVTELLVNISKHELKPKHEVLTAEEKAELLKKYNLEDSRLPC 232

Query: 587 MLESDPVSRYHGLKKGQIVKVTYEGELTGSHVTYRCV 697
           MLE+D V+RY+GL KG IVK+TY+GELTG HVTYRC+
Sbjct: 233 MLENDAVARYYGLGKGTIVKITYDGELTGHHVTYRCI 269


>ref|XP_006364435.1| PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Solanum
           tuberosum]
          Length = 227

 Score =  226 bits (576), Expect = 9e-57
 Identities = 115/212 (54%), Positives = 155/212 (73%), Gaps = 1/212 (0%)
 Frame = +2

Query: 65  CLSSFVDRGSVESHRYFLARRTLLEMIRDRGFPVPDDELALTLPSFRSKFGDKPKLDDLR 244
           CL+SFVD G+VESHRYFLARRT+LEM++DRGF +P+ E+  TL  FR K+G  P ++ LR
Sbjct: 18  CLASFVDDGTVESHRYFLARRTILEMLKDRGFAIPNSEIDTTLQEFREKYGQTPDVERLR 77

Query: 245 ISLSIPCKGSPPKKLLVIFFGTEPFKLSTLREMYGAV-KQENLTNLILVLQSKMTSKARD 421
           +S     +     K+LVIF G    K++ +R +   +  +E+L+ LILV+Q++MT+ A  
Sbjct: 78  VSAMH--RNDLTNKVLVIFCGPNAVKVNVIRSILTQIMNKESLSRLILVIQNQMTNPAMK 135

Query: 422 GVKEISKIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKKYNVGESQFPRMLESD 601
            V E+   KVE+FQIT+LLVNITKHVL P+HELLT  EK+ LLKKYN+ E Q PRM + D
Sbjct: 136 AV-ELFSFKVEIFQITDLLVNITKHVLKPRHELLTDTEKEKLLKKYNLEEKQLPRMSQKD 194

Query: 602 PVSRYHGLKKGQIVKVTYEGELTGSHVTYRCV 697
            ++RY+GL+KGQ+VKVTY  E+  +HVTYRCV
Sbjct: 195 AIARYYGLEKGQVVKVTYSSEIIETHVTYRCV 226


>gb|EOY19924.1| RNA polymerase II fifth largest subunit, putative isoform 2
           [Theobroma cacao]
          Length = 235

 Score =  226 bits (576), Expect = 9e-57
 Identities = 112/212 (52%), Positives = 156/212 (73%)
 Frame = +2

Query: 65  CLSSFVDRGSVESHRYFLARRTLLEMIRDRGFPVPDDELALTLPSFRSKFGDKPKLDDLR 244
           C+ S VD+GSVESHR++LAR+T+ EM++DRG+ V D EL  ++  FRS FGD+P L+ LR
Sbjct: 27  CIKSMVDQGSVESHRFYLARKTVWEMLKDRGYNVADSELTPSITEFRSVFGDQPDLELLR 86

Query: 245 ISLSIPCKGSPPKKLLVIFFGTEPFKLSTLREMYGAVKQENLTNLILVLQSKMTSKARDG 424
           IS+S+  + +P KK+LV+F GT   + +T+  + G +  E+L+ LIL+LQSKM S A   
Sbjct: 87  ISVSL--RSNPSKKILVVFMGTNDIRKATVCALKGQILNESLSGLILILQSKMNSFALKE 144

Query: 425 VKEISKIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKKYNVGESQFPRMLESDP 604
           +K     KVE+F+I +L VNITKH LMPKHE+LT +EKQ LLKKY + + Q P+ML++DP
Sbjct: 145 LKNFP-FKVELFKIADLYVNITKHFLMPKHEVLTAEEKQKLLKKYQLEDKQLPQMLQTDP 203

Query: 605 VSRYHGLKKGQIVKVTYEGELTGSHVTYRCVL 700
           ++RY+GL+KGQ+VKVTY  E    H  YRCV+
Sbjct: 204 IARYYGLEKGQVVKVTYSEEFVQFHEQYRCVV 235