BLASTX nr result
ID: Zingiber23_contig00008603
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00008603
(543 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_001150884.1| plastid-specific ribosomal protein 6 [Zea ma... 89 5e-16
ref|NP_001158969.1| plastid-specific ribosomal protein 6 [Zea ma... 89 5e-16
gb|EXC01136.1| 50S ribosomal protein 6 [Morus notabilis] 88 2e-15
ref|XP_004979460.1| PREDICTED: 50S ribosomal protein 6, chloropl... 84 2e-14
ref|XP_003577468.1| PREDICTED: 50S ribosomal protein 6, chloropl... 81 1e-13
ref|XP_006400330.1| hypothetical protein EUTSA_v10015071mg [Eutr... 80 2e-13
gb|EEE52269.1| hypothetical protein OsJ_34231 [Oryza sativa Japo... 80 3e-13
ref|NP_001068076.1| Os11g0550800 [Oryza sativa Japonica Group] g... 80 3e-13
ref|XP_002510018.1| 50S ribosomal protein CL25, chloroplast prec... 79 7e-13
ref|XP_002277800.1| PREDICTED: 50S ribosomal protein 6, chloropl... 79 9e-13
ref|XP_002456091.1| hypothetical protein SORBIDRAFT_03g030290 [S... 78 1e-12
dbj|BAJ92980.1| predicted protein [Hordeum vulgare subsp. vulgare] 78 2e-12
gb|EMJ16314.1| hypothetical protein PRUPE_ppa012953mg [Prunus pe... 77 2e-12
sp|P82411.1|PSRP6_SPIOL RecName: Full=50S ribosomal protein 6, c... 77 2e-12
ref|NP_568358.1| plastid-specific 50S ribosomal protein 6 [Arabi... 77 3e-12
ref|XP_002871784.1| hypothetical protein ARALYDRAFT_488653 [Arab... 77 3e-12
ref|XP_006288938.1| hypothetical protein CARUB_v10002303mg [Caps... 77 3e-12
ref|XP_006852759.1| hypothetical protein AMTR_s00033p00126850 [A... 76 5e-12
ref|XP_002302374.1| plastid-specific ribosomal family protein [P... 76 5e-12
gb|EPS64597.1| hypothetical protein M569_10187, partial [Genlise... 76 6e-12
>ref|NP_001150884.1| plastid-specific ribosomal protein 6 [Zea mays]
gi|195642604|gb|ACG40770.1| plastid-specific ribosomal
protein 6 precursor [Zea mays]
Length = 123
Score = 89.4 bits (220), Expect = 5e-16
Identities = 49/96 (51%), Positives = 56/96 (58%), Gaps = 10/96 (10%)
Frame = +1
Query: 1 MASMAVMLANAVRVPCANPKPS----------SFSPSYGGGDRGSPSVVECSSRPQKKAT 150
M+ + +LA V P + P PS FSP +GGG + VECSSRPQKK T
Sbjct: 1 MSPVTALLAGTVVPPASAPAPSPARHARHYSVGFSPLHGGGR--AALAVECSSRPQKKGT 58
Query: 151 SHHMKTRPKKTQPWDIKRKGPTAYXXXXXXXXDWTL 258
HHMKTRPKKTQPWDIKR+ PT Y DWTL
Sbjct: 59 KHHMKTRPKKTQPWDIKRR-PTQYPPLPPLPPDWTL 93
>ref|NP_001158969.1| plastid-specific ribosomal protein 6 [Zea mays]
gi|195615274|gb|ACG29467.1| plastid-specific ribosomal
protein 6 precursor [Zea mays]
gi|413925596|gb|AFW65528.1| plastid-specific ribosomal
protein 6 [Zea mays]
Length = 121
Score = 89.4 bits (220), Expect = 5e-16
Identities = 48/94 (51%), Positives = 56/94 (59%), Gaps = 8/94 (8%)
Frame = +1
Query: 1 MASMAVMLANAVRVPCANPKPS--------SFSPSYGGGDRGSPSVVECSSRPQKKATSH 156
M+ + +LA V P + P P+ FSP +GGG + VECSSRPQKK T H
Sbjct: 1 MSPVTALLAGTVVPPASAPSPARHARHYSVGFSPLHGGGR--AALAVECSSRPQKKGTKH 58
Query: 157 HMKTRPKKTQPWDIKRKGPTAYXXXXXXXXDWTL 258
HMKTRPKKTQPWDIKR+ PT Y DWTL
Sbjct: 59 HMKTRPKKTQPWDIKRR-PTQYPPLPPLPPDWTL 91
>gb|EXC01136.1| 50S ribosomal protein 6 [Morus notabilis]
Length = 115
Score = 87.8 bits (216), Expect = 2e-15
Identities = 46/81 (56%), Positives = 53/81 (65%), Gaps = 5/81 (6%)
Frame = +1
Query: 31 AVRVPCANPKPSSF-----SPSYGGGDRGSPSVVECSSRPQKKATSHHMKTRPKKTQPWD 195
AVR+P A P+SF S + GG G P+V+ECSSRP KKAT+HHMKTRPKKTQ WD
Sbjct: 13 AVRIPSA---PASFAGARKSAPWNGGGGGGPAVIECSSRPTKKATAHHMKTRPKKTQAWD 69
Query: 196 IKRKGPTAYXXXXXXXXDWTL 258
I+RK PT Y DW L
Sbjct: 70 IRRK-PTVYAPLPPLPPDWVL 89
>ref|XP_004979460.1| PREDICTED: 50S ribosomal protein 6, chloroplastic-like [Setaria
italica]
Length = 117
Score = 84.3 bits (207), Expect = 2e-14
Identities = 46/85 (54%), Positives = 52/85 (61%)
Frame = +1
Query: 4 ASMAVMLANAVRVPCANPKPSSFSPSYGGGDRGSPSVVECSSRPQKKATSHHMKTRPKKT 183
A +A A VP +P+ PS GG R + +V ECSSRPQKK T HHMKTRPKKT
Sbjct: 6 ALLAGTAVPAAPVPARPSRPTVGFPSLLGGGRAALAV-ECSSRPQKKGTKHHMKTRPKKT 64
Query: 184 QPWDIKRKGPTAYXXXXXXXXDWTL 258
QPWDIKR+ PT Y DWTL
Sbjct: 65 QPWDIKRR-PTQYPPLPQLPPDWTL 88
>ref|XP_003577468.1| PREDICTED: 50S ribosomal protein 6, chloroplastic-like
[Brachypodium distachyon]
Length = 118
Score = 81.3 bits (199), Expect = 1e-13
Identities = 44/86 (51%), Positives = 50/86 (58%)
Frame = +1
Query: 1 MASMAVMLANAVRVPCANPKPSSFSPSYGGGDRGSPSVVECSSRPQKKATSHHMKTRPKK 180
M+ + LA A P A P+ + S + G G VECSSRPQKK T HHMKTRPKK
Sbjct: 1 MSLVTAFLAGAA-APAAAPRTARPSAGFFGVGGGCALTVECSSRPQKKGTKHHMKTRPKK 59
Query: 181 TQPWDIKRKGPTAYXXXXXXXXDWTL 258
TQ WDIKR+ PT Y DWTL
Sbjct: 60 TQRWDIKRR-PTQYPPLPALPEDWTL 84
>ref|XP_006400330.1| hypothetical protein EUTSA_v10015071mg [Eutrema salsugineum]
gi|557101420|gb|ESQ41783.1| hypothetical protein
EUTSA_v10015071mg [Eutrema salsugineum]
Length = 109
Score = 80.5 bits (197), Expect = 2e-13
Identities = 39/82 (47%), Positives = 47/82 (57%)
Frame = +1
Query: 7 SMAVMLANAVRVPCANPKPSSFSPSYGGGDRGSPSVVECSSRPQKKATSHHMKTRPKKTQ 186
S++ + + A+P F G G V+ECSSRPQKK+T+HH KTRPKKTQ
Sbjct: 2 SVSAIFGTGIVTVAASPSLRQFQVPKSGNGGGLGMVIECSSRPQKKSTAHHRKTRPKKTQ 61
Query: 187 PWDIKRKGPTAYXXXXXXXXDW 252
PWDIKRK PT Y DW
Sbjct: 62 PWDIKRK-PTVYAPLPPLPPDW 82
>gb|EEE52269.1| hypothetical protein OsJ_34231 [Oryza sativa Japonica Group]
Length = 127
Score = 80.1 bits (196), Expect = 3e-13
Identities = 44/88 (50%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Frame = +1
Query: 1 MASMAVMLANAVR-VPCANPKPSSFSP-SYGGGDRGSPSVVECSSRPQKKATSHHMKTRP 174
M+ + +LA A +P +PS +P Y G VECSSRPQKKAT HHMKTRP
Sbjct: 1 MSPVTALLAGAAAPLPAMARRPSRVAPPGYSPVGGGCALAVECSSRPQKKATKHHMKTRP 60
Query: 175 KKTQPWDIKRKGPTAYXXXXXXXXDWTL 258
KK+QPWD KR+ PT Y DWTL
Sbjct: 61 KKSQPWDRKRR-PTQYRPLPALRPDWTL 87
>ref|NP_001068076.1| Os11g0550800 [Oryza sativa Japonica Group]
gi|108864492|gb|ABA94192.2| expressed protein [Oryza
sativa Japonica Group] gi|113645298|dbj|BAF28439.1|
Os11g0550800 [Oryza sativa Japonica Group]
gi|215694720|dbj|BAG89911.1| unnamed protein product
[Oryza sativa Japonica Group]
gi|215740870|dbj|BAG97026.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 127
Score = 80.1 bits (196), Expect = 3e-13
Identities = 44/88 (50%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Frame = +1
Query: 1 MASMAVMLANAVR-VPCANPKPSSFSP-SYGGGDRGSPSVVECSSRPQKKATSHHMKTRP 174
M+ + +LA A +P +PS +P Y G VECSSRPQKKAT HHMKTRP
Sbjct: 1 MSPVTALLAGAAAPLPAMARRPSRVAPPGYSPVGGGCALAVECSSRPQKKATKHHMKTRP 60
Query: 175 KKTQPWDIKRKGPTAYXXXXXXXXDWTL 258
KK+QPWD KR+ PT Y DWTL
Sbjct: 61 KKSQPWDRKRR-PTQYRPLPALPPDWTL 87
>ref|XP_002510018.1| 50S ribosomal protein CL25, chloroplast precursor, putative
[Ricinus communis] gi|223550719|gb|EEF52205.1| 50S
ribosomal protein CL25, chloroplast precursor, putative
[Ricinus communis]
Length = 126
Score = 79.0 bits (193), Expect = 7e-13
Identities = 39/68 (57%), Positives = 47/68 (69%)
Frame = +1
Query: 55 PKPSSFSPSYGGGDRGSPSVVECSSRPQKKATSHHMKTRPKKTQPWDIKRKGPTAYXXXX 234
PK ++ + Y GG V+ECSSRP+KKAT+HHMKTRPKK+QPWDI+RK PT Y
Sbjct: 30 PKTATGNGWYSGG-----LVIECSSRPKKKATAHHMKTRPKKSQPWDIRRK-PTVYPPLP 83
Query: 235 XXXXDWTL 258
DWTL
Sbjct: 84 PLPPDWTL 91
>ref|XP_002277800.1| PREDICTED: 50S ribosomal protein 6, chloroplastic [Vitis vinifera]
Length = 108
Score = 78.6 bits (192), Expect = 9e-13
Identities = 37/62 (59%), Positives = 44/62 (70%)
Frame = +1
Query: 73 SPSYGGGDRGSPSVVECSSRPQKKATSHHMKTRPKKTQPWDIKRKGPTAYXXXXXXXXDW 252
+P GGG +V+ECSSRPQKK TSHHMKTRP+KTQPWDIKR+ PT Y +W
Sbjct: 27 APRLGGG----AAVIECSSRPQKKGTSHHMKTRPRKTQPWDIKRR-PTVYAPLPPLPPEW 81
Query: 253 TL 258
T+
Sbjct: 82 TV 83
>ref|XP_002456091.1| hypothetical protein SORBIDRAFT_03g030290 [Sorghum bicolor]
gi|241928066|gb|EES01211.1| hypothetical protein
SORBIDRAFT_03g030290 [Sorghum bicolor]
Length = 123
Score = 78.2 bits (191), Expect = 1e-12
Identities = 38/61 (62%), Positives = 40/61 (65%)
Frame = +1
Query: 76 PSYGGGDRGSPSVVECSSRPQKKATSHHMKTRPKKTQPWDIKRKGPTAYXXXXXXXXDWT 255
PS G + VECSSRPQKK T HHMKTRPKKTQPWDIKR+ PT Y DWT
Sbjct: 32 PSLPNGAGRAALAVECSSRPQKKGTKHHMKTRPKKTQPWDIKRR-PTQYPPLPPLPPDWT 90
Query: 256 L 258
L
Sbjct: 91 L 91
>dbj|BAJ92980.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 118
Score = 77.8 bits (190), Expect = 2e-12
Identities = 42/86 (48%), Positives = 49/86 (56%)
Frame = +1
Query: 1 MASMAVMLANAVRVPCANPKPSSFSPSYGGGDRGSPSVVECSSRPQKKATSHHMKTRPKK 180
M+ + LA + P P+ + S + G D G VECSSRPQKK T HHMKTRPKK
Sbjct: 1 MSLVTAFLAGSA-APAVAPRSARPSVGFFGVDGGCALSVECSSRPQKKGTKHHMKTRPKK 59
Query: 181 TQPWDIKRKGPTAYXXXXXXXXDWTL 258
TQ WDIKR+ P Y DWTL
Sbjct: 60 TQRWDIKRR-PIQYEPLPALPDDWTL 84
>gb|EMJ16314.1| hypothetical protein PRUPE_ppa012953mg [Prunus persica]
Length = 148
Score = 77.4 bits (189), Expect = 2e-12
Identities = 39/68 (57%), Positives = 46/68 (67%)
Frame = +1
Query: 55 PKPSSFSPSYGGGDRGSPSVVECSSRPQKKATSHHMKTRPKKTQPWDIKRKGPTAYXXXX 234
PK S + S GGG + ++E SSRPQKKAT+HH KTRP+KTQPWD+KRK PT Y
Sbjct: 17 PKTSPWRGSVGGG---TGLMIEYSSRPQKKATAHHRKTRPRKTQPWDVKRK-PTVYTLLP 72
Query: 235 XXXXDWTL 258
DWTL
Sbjct: 73 PLPADWTL 80
>sp|P82411.1|PSRP6_SPIOL RecName: Full=50S ribosomal protein 6, chloroplastic; AltName:
Full=CL25; AltName: Full=Plastid-specific 50S ribosomal
protein 6; Short=PSRP-6; Flags: Precursor
gi|7578927|gb|AAF64189.1|AF245292_1 plastid-specific
ribosomal protein 6 precursor [Spinacia oleracea]
Length = 116
Score = 77.4 bits (189), Expect = 2e-12
Identities = 37/81 (45%), Positives = 46/81 (56%)
Frame = +1
Query: 16 VMLANAVRVPCANPKPSSFSPSYGGGDRGSPSVVECSSRPQKKATSHHMKTRPKKTQPWD 195
V + + +R + + PS GG G +ECSSRPQKK T+HHMKTRPKKT WD
Sbjct: 12 VTIPSVLRTSSVDGRTVKLQPSTGGSCGGGVITIECSSRPQKKGTAHHMKTRPKKTARWD 71
Query: 196 IKRKGPTAYXXXXXXXXDWTL 258
IKR GP Y +WT+
Sbjct: 72 IKR-GPAVYPPLPPLPAEWTI 91
>ref|NP_568358.1| plastid-specific 50S ribosomal protein 6 [Arabidopsis thaliana]
gi|75171293|sp|Q9FKP0.1|PSRP6_ARATH RecName: Full=50S
ribosomal protein 6, chloroplastic; AltName: Full=CL25;
AltName: Full=Plastid-specific 50S ribosomal protein 6;
Short=PSRP-6; Flags: Precursor
gi|10177888|dbj|BAB11220.1| unnamed protein product
[Arabidopsis thaliana] gi|14517428|gb|AAK62604.1|
AT5g17870/MPI7_10 [Arabidopsis thaliana]
gi|20147339|gb|AAM10383.1| AT5g17870/MPI7_10
[Arabidopsis thaliana] gi|21554906|gb|AAM63726.1|
plastid-specific ribosomal protein 6 precursor
(Psrp-6)-like [Arabidopsis thaliana]
gi|332005097|gb|AED92480.1| plastid-specific 50S
ribosomal protein 6 [Arabidopsis thaliana]
Length = 106
Score = 77.0 bits (188), Expect = 3e-12
Identities = 38/83 (45%), Positives = 48/83 (57%)
Frame = +1
Query: 7 SMAVMLANAVRVPCANPKPSSFSPSYGGGDRGSPSVVECSSRPQKKATSHHMKTRPKKTQ 186
S++ + + A+P F G G V+ECSSRPQKK+T+HH KTRPKKTQ
Sbjct: 2 SVSAIFGTGIVTVAASPVLRQFQVPKLGNGGGLGMVIECSSRPQKKSTAHHRKTRPKKTQ 61
Query: 187 PWDIKRKGPTAYXXXXXXXXDWT 255
PWDIKRK PT Y +W+
Sbjct: 62 PWDIKRK-PTVYAPLPPLPAEWS 83
>ref|XP_002871784.1| hypothetical protein ARALYDRAFT_488653 [Arabidopsis lyrata subsp.
lyrata] gi|297317621|gb|EFH48043.1| hypothetical protein
ARALYDRAFT_488653 [Arabidopsis lyrata subsp. lyrata]
Length = 108
Score = 77.0 bits (188), Expect = 3e-12
Identities = 38/83 (45%), Positives = 48/83 (57%)
Frame = +1
Query: 7 SMAVMLANAVRVPCANPKPSSFSPSYGGGDRGSPSVVECSSRPQKKATSHHMKTRPKKTQ 186
S++ + + A+P F G G V+ECSSRPQKK+T+HH K+RPKKTQ
Sbjct: 2 SVSAIFGTGIVTVAASPVLRQFQVPTLGNGGGLGMVIECSSRPQKKSTAHHRKSRPKKTQ 61
Query: 187 PWDIKRKGPTAYXXXXXXXXDWT 255
PWDIKRK PT Y +WT
Sbjct: 62 PWDIKRK-PTVYAPLPPLPAEWT 83
>ref|XP_006288938.1| hypothetical protein CARUB_v10002303mg [Capsella rubella]
gi|482557644|gb|EOA21836.1| hypothetical protein
CARUB_v10002303mg [Capsella rubella]
Length = 109
Score = 76.6 bits (187), Expect = 3e-12
Identities = 39/85 (45%), Positives = 49/85 (57%)
Frame = +1
Query: 1 MASMAVMLANAVRVPCANPKPSSFSPSYGGGDRGSPSVVECSSRPQKKATSHHMKTRPKK 180
M+ A+ V V ++P F G G V+ECSSRPQKK+T+HH K+RPKK
Sbjct: 1 MSVSAIFGTGIVTVAASSPVLRQFQVPKLGNGGGLGMVIECSSRPQKKSTAHHRKSRPKK 60
Query: 181 TQPWDIKRKGPTAYXXXXXXXXDWT 255
+QPWDIKRK PT Y +WT
Sbjct: 61 SQPWDIKRK-PTVYAPLPPLPAEWT 84
>ref|XP_006852759.1| hypothetical protein AMTR_s00033p00126850 [Amborella trichopoda]
gi|548856373|gb|ERN14226.1| hypothetical protein
AMTR_s00033p00126850 [Amborella trichopoda]
Length = 97
Score = 76.3 bits (186), Expect = 5e-12
Identities = 42/72 (58%), Positives = 47/72 (65%), Gaps = 6/72 (8%)
Frame = +1
Query: 61 PSSFS---PSYG---GGDRGSPSVVECSSRPQKKATSHHMKTRPKKTQPWDIKRKGPTAY 222
PSS S PS+G + S+VECSSRPQKKATSHHMKTRP+K Q WDIKR GPT Y
Sbjct: 9 PSSLSRICPSFGLKKQVELRKVSIVECSSRPQKKATSHHMKTRPRKRQAWDIKR-GPTVY 67
Query: 223 XXXXXXXXDWTL 258
DW+L
Sbjct: 68 PPLPPLPPDWSL 79
>ref|XP_002302374.1| plastid-specific ribosomal family protein [Populus trichocarpa]
gi|118486925|gb|ABK95296.1| unknown [Populus
trichocarpa] gi|222844100|gb|EEE81647.1|
plastid-specific ribosomal family protein [Populus
trichocarpa]
Length = 123
Score = 76.3 bits (186), Expect = 5e-12
Identities = 44/80 (55%), Positives = 48/80 (60%), Gaps = 12/80 (15%)
Frame = +1
Query: 55 PKPS---SFSPSYG---------GGDRGSPSVVECSSRPQKKATSHHMKTRPKKTQPWDI 198
PKPS SF P G G G S+ ECSSRPQKKAT+HH KTRP+K+QPWDI
Sbjct: 15 PKPSTTPSFKPVNGEFKTVPIGTGFGHGGMSI-ECSSRPQKKATAHHRKTRPRKSQPWDI 73
Query: 199 KRKGPTAYXXXXXXXXDWTL 258
KRK PT Y DWTL
Sbjct: 74 KRK-PTVYAPLPPLPPDWTL 92
>gb|EPS64597.1| hypothetical protein M569_10187, partial [Genlisea aurea]
Length = 57
Score = 75.9 bits (185), Expect = 6e-12
Identities = 35/57 (61%), Positives = 42/57 (73%)
Frame = +1
Query: 88 GGDRGSPSVVECSSRPQKKATSHHMKTRPKKTQPWDIKRKGPTAYXXXXXXXXDWTL 258
GGD G V+ECSSRP+KKAT HHMKTRP+KT P DI+R+GPTAY +W+L
Sbjct: 2 GGDCGL--VIECSSRPEKKATKHHMKTRPRKTNPSDIRRRGPTAYPTLPVLPPEWSL 56