BLASTX nr result
ID: Zingiber23_contig00006533
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00006533
(274 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EXB57576.1| DEAD-box ATP-dependent RNA helicase 3 [Morus nota... 135 4e-30
ref|XP_002512602.1| dead box ATP-dependent RNA helicase, putativ... 128 7e-28
ref|XP_004302309.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 127 1e-27
ref|XP_004165586.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 127 1e-27
ref|XP_004135577.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 127 1e-27
gb|EMS52116.1| DEAD-box ATP-dependent RNA helicase 3, chloroplas... 127 2e-27
ref|NP_001051773.1| Os03g0827700 [Oryza sativa Japonica Group] g... 127 2e-27
sp|Q0DM51.2|RH3_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA h... 127 2e-27
gb|EMJ09551.1| hypothetical protein PRUPE_ppa001778mg [Prunus pe... 126 3e-27
dbj|BAD21122.1| ATP-dependent RNA helicase [Hordeum vulgare subs... 125 8e-27
ref|XP_006382234.1| hypothetical protein POPTR_0005s00200g [Popu... 123 2e-26
ref|XP_006382233.1| hypothetical protein POPTR_0005s00200g [Popu... 123 2e-26
tpg|DAA52300.1| TPA: putative DEAD-box ATP-dependent RNA helicas... 123 2e-26
ref|XP_002330040.1| predicted protein [Populus trichocarpa] 123 2e-26
gb|ACG27839.1| nucleolar RNA helicase 2 [Zea mays] 123 2e-26
ref|XP_003563193.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 123 3e-26
ref|XP_003563192.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 123 3e-26
ref|XP_004981197.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 122 4e-26
ref|XP_006382238.1| hypothetical protein POPTR_0005s00240g [Popu... 122 5e-26
ref|XP_002330044.1| predicted protein [Populus trichocarpa] gi|5... 122 5e-26
>gb|EXB57576.1| DEAD-box ATP-dependent RNA helicase 3 [Morus notabilis]
Length = 810
Score = 135 bits (341), Expect = 4e-30
Identities = 68/81 (83%), Positives = 73/81 (90%)
Frame = +3
Query: 18 AEVDQDELAVSKLGLPQQLVSILEKRGITNLFPIQRAVLIPVLEGRDLIARAKTGTGKTL 197
A VD DELA+SKLGLPQ+LV LEKRGIT+LFPIQRAVL+P LEGRDLIARAKTGTGKTL
Sbjct: 103 ASVDDDELAISKLGLPQRLVDSLEKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTL 162
Query: 198 AFGIPIIKRLTEDDEAEGRKR 260
AFGIPIIKRLTEDDE G +R
Sbjct: 163 AFGIPIIKRLTEDDEQRGSRR 183
>ref|XP_002512602.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223548563|gb|EEF50054.1| dead box ATP-dependent RNA
helicase, putative [Ricinus communis]
Length = 772
Score = 128 bits (322), Expect = 7e-28
Identities = 64/81 (79%), Positives = 72/81 (88%)
Frame = +3
Query: 27 DQDELAVSKLGLPQQLVSILEKRGITNLFPIQRAVLIPVLEGRDLIARAKTGTGKTLAFG 206
D DELA+SKLGLPQ+LV LEKRGIT+LFPIQRAVL+P LEGRDLIARAKTGTGKTLAFG
Sbjct: 116 DDDELAISKLGLPQRLVESLEKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFG 175
Query: 207 IPIIKRLTEDDEAEGRKRSRL 269
IPIIK +TEDD++ R+ RL
Sbjct: 176 IPIIKCITEDDKSSQRRTGRL 196
>ref|XP_004302309.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Fragaria vesca subsp. vesca]
Length = 772
Score = 127 bits (320), Expect = 1e-27
Identities = 63/81 (77%), Positives = 73/81 (90%)
Frame = +3
Query: 30 QDELAVSKLGLPQQLVSILEKRGITNLFPIQRAVLIPVLEGRDLIARAKTGTGKTLAFGI 209
+DELA+SKLGLPQ+LV LE+RGI++LFPIQRAVL+P LEGRD+IARAKTGTGKTLAFGI
Sbjct: 114 KDELALSKLGLPQRLVDSLERRGISSLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGI 173
Query: 210 PIIKRLTEDDEAEGRKRSRLL 272
PI+KRLTEDDE G +RS L
Sbjct: 174 PILKRLTEDDEQRGSRRSGYL 194
>ref|XP_004165586.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like, partial [Cucumis sativus]
Length = 726
Score = 127 bits (320), Expect = 1e-27
Identities = 65/86 (75%), Positives = 74/86 (86%), Gaps = 1/86 (1%)
Frame = +3
Query: 15 AAEVDQDELAVSKLGLPQQLVSILEKRGITNLFPIQRAVLIPVLEGRDLIARAKTGTGKT 194
A D DELA+SKL LPQ+L L+KRGIT+LFPIQRAVL+P LEGRDLIARAKTGTGKT
Sbjct: 104 AFAADDDELAISKLNLPQRLTDALQKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKT 163
Query: 195 LAFGIPIIKRLTEDDEAEG-RKRSRL 269
LAFGIPI+K+LTEDDE+ R+RSRL
Sbjct: 164 LAFGIPILKKLTEDDESRSLRRRSRL 189
>ref|XP_004135577.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Cucumis sativus]
Length = 748
Score = 127 bits (320), Expect = 1e-27
Identities = 65/86 (75%), Positives = 74/86 (86%), Gaps = 1/86 (1%)
Frame = +3
Query: 15 AAEVDQDELAVSKLGLPQQLVSILEKRGITNLFPIQRAVLIPVLEGRDLIARAKTGTGKT 194
A D DELA+SKL LPQ+L L+KRGIT+LFPIQRAVL+P LEGRDLIARAKTGTGKT
Sbjct: 104 AFAADDDELAISKLNLPQRLTDALQKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKT 163
Query: 195 LAFGIPIIKRLTEDDEAEG-RKRSRL 269
LAFGIPI+K+LTEDDE+ R+RSRL
Sbjct: 164 LAFGIPILKKLTEDDESRSLRRRSRL 189
>gb|EMS52116.1| DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Triticum
urartu]
Length = 884
Score = 127 bits (319), Expect = 2e-27
Identities = 65/89 (73%), Positives = 74/89 (83%)
Frame = +3
Query: 3 EEGFAAEVDQDELAVSKLGLPQQLVSILEKRGITNLFPIQRAVLIPVLEGRDLIARAKTG 182
+EG A E D DELA+S+LGLP QLV+ LEKRGIT+LFPIQRAVLIP LEGRDLIARAKTG
Sbjct: 89 QEGPAVEGDADELAISRLGLPAQLVATLEKRGITHLFPIQRAVLIPALEGRDLIARAKTG 148
Query: 183 TGKTLAFGIPIIKRLTEDDEAEGRKRSRL 269
TGKTLAFGIP+IK++ E DE R R+
Sbjct: 149 TGKTLAFGIPMIKQIIEQDEGRTPGRGRI 177
>ref|NP_001051773.1| Os03g0827700 [Oryza sativa Japonica Group]
gi|113550244|dbj|BAF13687.1| Os03g0827700, partial
[Oryza sativa Japonica Group]
Length = 723
Score = 127 bits (318), Expect = 2e-27
Identities = 65/93 (69%), Positives = 78/93 (83%), Gaps = 4/93 (4%)
Frame = +3
Query: 3 EEGFAA----EVDQDELAVSKLGLPQQLVSILEKRGITNLFPIQRAVLIPVLEGRDLIAR 170
EEG A E D+DELA+++LGLP+QLVS LEKRGIT+LFPIQRAVLIP L+GRDLIAR
Sbjct: 53 EEGVEAVGGGEGDEDELAIARLGLPEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIAR 112
Query: 171 AKTGTGKTLAFGIPIIKRLTEDDEAEGRKRSRL 269
AKTGTGKTLAFGIP+IK+L E+D+ +R R+
Sbjct: 113 AKTGTGKTLAFGIPMIKQLMEEDDGRSVRRGRI 145
>sp|Q0DM51.2|RH3_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 3, chloroplastic;
Flags: Precursor gi|18855061|gb|AAL79753.1|AC096687_17
putative RNA helicase [Oryza sativa Japonica Group]
Length = 758
Score = 127 bits (318), Expect = 2e-27
Identities = 65/93 (69%), Positives = 78/93 (83%), Gaps = 4/93 (4%)
Frame = +3
Query: 3 EEGFAA----EVDQDELAVSKLGLPQQLVSILEKRGITNLFPIQRAVLIPVLEGRDLIAR 170
EEG A E D+DELA+++LGLP+QLVS LEKRGIT+LFPIQRAVLIP L+GRDLIAR
Sbjct: 88 EEGVEAVGGGEGDEDELAIARLGLPEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIAR 147
Query: 171 AKTGTGKTLAFGIPIIKRLTEDDEAEGRKRSRL 269
AKTGTGKTLAFGIP+IK+L E+D+ +R R+
Sbjct: 148 AKTGTGKTLAFGIPMIKQLMEEDDGRSVRRGRI 180
>gb|EMJ09551.1| hypothetical protein PRUPE_ppa001778mg [Prunus persica]
Length = 766
Score = 126 bits (316), Expect = 3e-27
Identities = 64/85 (75%), Positives = 72/85 (84%)
Frame = +3
Query: 6 EGFAAEVDQDELAVSKLGLPQQLVSILEKRGITNLFPIQRAVLIPVLEGRDLIARAKTGT 185
E +A D DELA+SKLGLPQ+LV LEKRGI++LFPIQRAVL+P LEGRD+IARAKTGT
Sbjct: 104 EPASAAGDDDELALSKLGLPQRLVDSLEKRGISSLFPIQRAVLVPALEGRDIIARAKTGT 163
Query: 186 GKTLAFGIPIIKRLTEDDEAEGRKR 260
GKTLAFGIPI+KRLTEDDE R
Sbjct: 164 GKTLAFGIPILKRLTEDDEQRSSHR 188
>dbj|BAD21122.1| ATP-dependent RNA helicase [Hordeum vulgare subsp. vulgare]
gi|326532610|dbj|BAK05234.1| predicted protein [Hordeum
vulgare subsp. vulgare]
Length = 764
Score = 125 bits (313), Expect = 8e-27
Identities = 66/90 (73%), Positives = 76/90 (84%), Gaps = 1/90 (1%)
Frame = +3
Query: 3 EEGFAA-EVDQDELAVSKLGLPQQLVSILEKRGITNLFPIQRAVLIPVLEGRDLIARAKT 179
+EG AA E D+DELA+S+LGLP QLV+ LEKRGIT+LFPIQRAVLIP LEGRDLIARAKT
Sbjct: 78 QEGPAAVEGDKDELAISRLGLPAQLVATLEKRGITHLFPIQRAVLIPALEGRDLIARAKT 137
Query: 180 GTGKTLAFGIPIIKRLTEDDEAEGRKRSRL 269
GTGKTLAFGIP+IK++ E DE R R+
Sbjct: 138 GTGKTLAFGIPMIKQIIEQDEGRTPGRGRI 167
>ref|XP_006382234.1| hypothetical protein POPTR_0005s00200g [Populus trichocarpa]
gi|550337585|gb|ERP60031.1| hypothetical protein
POPTR_0005s00200g [Populus trichocarpa]
Length = 774
Score = 123 bits (309), Expect = 2e-26
Identities = 62/81 (76%), Positives = 69/81 (85%)
Frame = +3
Query: 18 AEVDQDELAVSKLGLPQQLVSILEKRGITNLFPIQRAVLIPVLEGRDLIARAKTGTGKTL 197
+ +DEL +SKLGLPQ+LV L+ RGIT+LFPIQRAVLIP LEGRDLIARAKTGTGKTL
Sbjct: 128 SNTSEDELDISKLGLPQRLVQTLQNRGITHLFPIQRAVLIPTLEGRDLIARAKTGTGKTL 187
Query: 198 AFGIPIIKRLTEDDEAEGRKR 260
AFGIPIIKRLTED E G +R
Sbjct: 188 AFGIPIIKRLTEDAELRGSQR 208
>ref|XP_006382233.1| hypothetical protein POPTR_0005s00200g [Populus trichocarpa]
gi|550337584|gb|ERP60030.1| hypothetical protein
POPTR_0005s00200g [Populus trichocarpa]
Length = 773
Score = 123 bits (309), Expect = 2e-26
Identities = 62/81 (76%), Positives = 69/81 (85%)
Frame = +3
Query: 18 AEVDQDELAVSKLGLPQQLVSILEKRGITNLFPIQRAVLIPVLEGRDLIARAKTGTGKTL 197
+ +DEL +SKLGLPQ+LV L+ RGIT+LFPIQRAVLIP LEGRDLIARAKTGTGKTL
Sbjct: 128 SNTSEDELDISKLGLPQRLVQTLQNRGITHLFPIQRAVLIPTLEGRDLIARAKTGTGKTL 187
Query: 198 AFGIPIIKRLTEDDEAEGRKR 260
AFGIPIIKRLTED E G +R
Sbjct: 188 AFGIPIIKRLTEDAELRGSQR 208
>tpg|DAA52300.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 743
Score = 123 bits (309), Expect = 2e-26
Identities = 63/89 (70%), Positives = 75/89 (84%), Gaps = 1/89 (1%)
Frame = +3
Query: 3 EEGF-AAEVDQDELAVSKLGLPQQLVSILEKRGITNLFPIQRAVLIPVLEGRDLIARAKT 179
+EGF A E D +ELA+++LGLP +LV+ LEKRGIT+LFPIQRAVLIP LEGRDLIARAKT
Sbjct: 75 DEGFEAGEGDNEELAIARLGLPDELVATLEKRGITHLFPIQRAVLIPALEGRDLIARAKT 134
Query: 180 GTGKTLAFGIPIIKRLTEDDEAEGRKRSR 266
GTGKTLAFGIP+IK+L E D+ +R R
Sbjct: 135 GTGKTLAFGIPMIKQLIEQDDGRITRRGR 163
>ref|XP_002330040.1| predicted protein [Populus trichocarpa]
Length = 735
Score = 123 bits (309), Expect = 2e-26
Identities = 62/81 (76%), Positives = 69/81 (85%)
Frame = +3
Query: 18 AEVDQDELAVSKLGLPQQLVSILEKRGITNLFPIQRAVLIPVLEGRDLIARAKTGTGKTL 197
+ +DEL +SKLGLPQ+LV L+ RGIT+LFPIQRAVLIP LEGRDLIARAKTGTGKTL
Sbjct: 89 SNTSEDELDISKLGLPQRLVQTLQNRGITHLFPIQRAVLIPTLEGRDLIARAKTGTGKTL 148
Query: 198 AFGIPIIKRLTEDDEAEGRKR 260
AFGIPIIKRLTED E G +R
Sbjct: 149 AFGIPIIKRLTEDAELRGSQR 169
>gb|ACG27839.1| nucleolar RNA helicase 2 [Zea mays]
Length = 744
Score = 123 bits (309), Expect = 2e-26
Identities = 63/89 (70%), Positives = 75/89 (84%), Gaps = 1/89 (1%)
Frame = +3
Query: 3 EEGF-AAEVDQDELAVSKLGLPQQLVSILEKRGITNLFPIQRAVLIPVLEGRDLIARAKT 179
+EGF A E D +ELA+++LGLP +LV+ LEKRGIT+LFPIQRAVLIP LEGRDLIARAKT
Sbjct: 75 DEGFEAGEGDNEELAIARLGLPDELVATLEKRGITHLFPIQRAVLIPALEGRDLIARAKT 134
Query: 180 GTGKTLAFGIPIIKRLTEDDEAEGRKRSR 266
GTGKTLAFGIP+IK+L E D+ +R R
Sbjct: 135 GTGKTLAFGIPMIKQLIEQDDGRITRRGR 163
>ref|XP_003563193.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like isoform 2 [Brachypodium distachyon]
Length = 749
Score = 123 bits (308), Expect = 3e-26
Identities = 64/94 (68%), Positives = 75/94 (79%), Gaps = 5/94 (5%)
Frame = +3
Query: 3 EEGFAAEV-----DQDELAVSKLGLPQQLVSILEKRGITNLFPIQRAVLIPVLEGRDLIA 167
E G A EV D++ELA+++LGLP QLV+ LEKRGIT+LFPIQRAVLIP LEGRDLIA
Sbjct: 77 EGGVAGEVEGFQGDEEELAIARLGLPDQLVATLEKRGITHLFPIQRAVLIPALEGRDLIA 136
Query: 168 RAKTGTGKTLAFGIPIIKRLTEDDEAEGRKRSRL 269
RAKTGTGKTLAFGIP+IK++ E DE R R+
Sbjct: 137 RAKTGTGKTLAFGIPMIKQIIEQDEGRSLGRGRI 170
>ref|XP_003563192.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like isoform 1 [Brachypodium distachyon]
Length = 769
Score = 123 bits (308), Expect = 3e-26
Identities = 64/94 (68%), Positives = 75/94 (79%), Gaps = 5/94 (5%)
Frame = +3
Query: 3 EEGFAAEV-----DQDELAVSKLGLPQQLVSILEKRGITNLFPIQRAVLIPVLEGRDLIA 167
E G A EV D++ELA+++LGLP QLV+ LEKRGIT+LFPIQRAVLIP LEGRDLIA
Sbjct: 77 EGGVAGEVEGFQGDEEELAIARLGLPDQLVATLEKRGITHLFPIQRAVLIPALEGRDLIA 136
Query: 168 RAKTGTGKTLAFGIPIIKRLTEDDEAEGRKRSRL 269
RAKTGTGKTLAFGIP+IK++ E DE R R+
Sbjct: 137 RAKTGTGKTLAFGIPMIKQIIEQDEGRSLGRGRI 170
>ref|XP_004981197.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Setaria italica]
Length = 759
Score = 122 bits (307), Expect = 4e-26
Identities = 60/89 (67%), Positives = 74/89 (83%)
Frame = +3
Query: 3 EEGFAAEVDQDELAVSKLGLPQQLVSILEKRGITNLFPIQRAVLIPVLEGRDLIARAKTG 182
E G + D++ELA+++LGLP +LV+ LEKRGIT+LFPIQRAVLIP LEGRDLIARAKTG
Sbjct: 83 EAGEGFQGDEEELAIARLGLPDELVATLEKRGITHLFPIQRAVLIPALEGRDLIARAKTG 142
Query: 183 TGKTLAFGIPIIKRLTEDDEAEGRKRSRL 269
TGKTLAFGIP+IKRL +D+ +R R+
Sbjct: 143 TGKTLAFGIPMIKRLMGEDDGRSTRRGRI 171
>ref|XP_006382238.1| hypothetical protein POPTR_0005s00240g [Populus trichocarpa]
gi|550337589|gb|ERP60035.1| hypothetical protein
POPTR_0005s00240g [Populus trichocarpa]
Length = 731
Score = 122 bits (306), Expect = 5e-26
Identities = 62/82 (75%), Positives = 69/82 (84%)
Frame = +3
Query: 15 AAEVDQDELAVSKLGLPQQLVSILEKRGITNLFPIQRAVLIPVLEGRDLIARAKTGTGKT 194
++ +DEL VSKLGLP +LV L+ RGIT+LFPIQRAVLIP LEGRDLIARAKTGTGKT
Sbjct: 125 SSNTSEDELDVSKLGLPHRLVQTLQNRGITHLFPIQRAVLIPALEGRDLIARAKTGTGKT 184
Query: 195 LAFGIPIIKRLTEDDEAEGRKR 260
LAFGIPIIKRLTED E G +R
Sbjct: 185 LAFGIPIIKRLTEDAELRGSQR 206
>ref|XP_002330044.1| predicted protein [Populus trichocarpa]
gi|566168507|ref|XP_006382239.1| hypothetical protein
POPTR_0005s00240g [Populus trichocarpa]
gi|550337590|gb|ERP60036.1| hypothetical protein
POPTR_0005s00240g [Populus trichocarpa]
Length = 775
Score = 122 bits (306), Expect = 5e-26
Identities = 62/82 (75%), Positives = 69/82 (84%)
Frame = +3
Query: 15 AAEVDQDELAVSKLGLPQQLVSILEKRGITNLFPIQRAVLIPVLEGRDLIARAKTGTGKT 194
++ +DEL VSKLGLP +LV L+ RGIT+LFPIQRAVLIP LEGRDLIARAKTGTGKT
Sbjct: 125 SSNTSEDELDVSKLGLPHRLVQTLQNRGITHLFPIQRAVLIPALEGRDLIARAKTGTGKT 184
Query: 195 LAFGIPIIKRLTEDDEAEGRKR 260
LAFGIPIIKRLTED E G +R
Sbjct: 185 LAFGIPIIKRLTEDAELRGSQR 206