BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00004489
         (4858 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II su...  2807   0.0  
ref|XP_004972809.1| PREDICTED: DNA-directed RNA polymerase II su...  2799   0.0  
ref|XP_004972810.1| PREDICTED: DNA-directed RNA polymerase II su...  2797   0.0  
ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su...  2797   0.0  
ref|XP_002443877.1| hypothetical protein SORBIDRAFT_07g003680 [S...  2777   0.0  
gb|AFW57310.1| RNA polymerase II large subunit family protein [Z...  2774   0.0  
ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [A...  2771   0.0  
gb|EMS50869.1| DNA-directed RNA polymerase II subunit RPB1 [Trit...  2767   0.0  
gb|EMT20712.1| DNA-directed RNA polymerase II subunit RPB1 [Aegi...  2764   0.0  
dbj|BAK02300.1| predicted protein [Hordeum vulgare subsp. vulgare]   2760   0.0  
ref|XP_003573479.1| PREDICTED: DNA-directed RNA polymerase II su...  2750   0.0  
ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II su...  2740   0.0  
ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  2740   0.0  
gb|EMJ04257.1| hypothetical protein PRUPE_ppa000093mg [Prunus pe...  2735   0.0  
ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II su...  2734   0.0  
ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II su...  2729   0.0  
gb|ESW29856.1| hypothetical protein PHAVU_002G104500g [Phaseolus...  2726   0.0  
ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II su...  2724   0.0  
ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II su...  2724   0.0  
ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II su...  2724   0.0  

>ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Oryza
            brachyantha]
          Length = 1855

 Score = 2807 bits (7277), Expect = 0.0
 Identities = 1389/1511 (91%), Positives = 1450/1511 (95%)
 Frame = -1

Query: 4858 EIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTIDRKMKCETCMANMAECPGHFGHLELA 4679
            EIRQMSVVQ+EH ETMERGKPKP GLSDPR+GTIDRK+KCETCMA MAECPGHFGHLELA
Sbjct: 27   EIRQMSVVQIEHAETMERGKPKPGGLSDPRLGTIDRKIKCETCMAGMAECPGHFGHLELA 86

Query: 4678 KPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAKFKQALKIRNPKNRLKRIYDACKSKKK 4499
            KPMFHIGF+KTVL+IMRCVCFNCSKILADEDD KFKQALKIRNPKNRLKRIYDACKSKK 
Sbjct: 87   KPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTKFKQALKIRNPKNRLKRIYDACKSKKV 146

Query: 4498 CAXXXXXXXXXXXXXDEPIKKTRNGCGAQQPNITIDGMKMVAEYKAPKKKSDEQEQLPEP 4319
            CA             DEP+K+ R GCGAQQPNIT+DGMKMVAE+KAPKKK+D+QEQLPEP
Sbjct: 147  CAGGDDLDVQEQQDTDEPVKR-RGGCGAQQPNITVDGMKMVAEFKAPKKKNDDQEQLPEP 205

Query: 4318 AERKQILSAERVLSVLKRITDDDCLLLGLNPKFARPDWMILQVLXXXXXXXXPSVMMDTS 4139
             ERKQILSAERVL+VLKRI+D+DCLLLGLNPKFARPDWMILQVL        PSVMMDTS
Sbjct: 206  VERKQILSAERVLNVLKRISDEDCLLLGLNPKFARPDWMILQVLPIPPPPVRPSVMMDTS 265

Query: 4138 SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNDLPGQPRAT 3959
            SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII+EFAQLLQFHIATYFDN+LPGQPRAT
Sbjct: 266  SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIITEFAQLLQFHIATYFDNELPGQPRAT 325

Query: 3958 QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 3779
            QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP INID+LGVPWSIALNLT
Sbjct: 326  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLT 385

Query: 3778 YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKV 3599
            YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRY+KKSSD HLELGYKV
Sbjct: 386  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKV 445

Query: 3598 ERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 3419
            ERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP
Sbjct: 446  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 505

Query: 3418 QSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW 3239
            QSFETRAEV+ELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDT IEKDVFMNILMW
Sbjct: 506  QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMW 565

Query: 3238 WEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINLIRFSAWHAESEVGSITPGDTLVRI 3059
            WEDFDGK+PAPAILKPRP+WTGKQVFNLIIPK INLIRFSAWH+E+E G ITPGDT+VRI
Sbjct: 566  WEDFDGKVPAPAILKPRPIWTGKQVFNLIIPKPINLIRFSAWHSEAETGFITPGDTMVRI 625

Query: 3058 EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 2879
            EKGELLSGTLCKK LGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN FSIGIG
Sbjct: 626  EKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIG 685

Query: 2878 DTIADAATMEKINETISKAKNDVKELIKLAQEKQLEAEPGRTMMESFENKVNQVLNKARD 2699
            DTIADAATMEKINETIS AKN+VKELIK A +K LEAEPGRTMMESFEN+VNQVLNKARD
Sbjct: 686  DTIADAATMEKINETISTAKNEVKELIKQAHDKHLEAEPGRTMMESFENRVNQVLNKARD 745

Query: 2698 DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFNERTLPHF 2519
            DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF +RTLPHF
Sbjct: 746  DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHF 805

Query: 2518 TKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 2339
            TKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED
Sbjct: 806  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 865

Query: 2338 IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFVHVFKYELDDDNWN 2159
            IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKK EF  VF+YELDD+NW 
Sbjct: 866  IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKGEFDTVFRYELDDENWR 925

Query: 2158 PSYMQPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDVTMPMPVNLKRLIWN 1979
            P+YM PEHVEDLKTIREFRNVF+AEVQKLEADR+QLGTEIATTGD T PMPVNLKRLIWN
Sbjct: 926  PNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWN 985

Query: 1978 AQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDFLSMEAQKNATLLFNILLRSTF 1799
            AQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDD +S+EAQKNATL FNILLRSTF
Sbjct: 986  AQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTF 1045

Query: 1798 ASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1619
            ASKRVLKEYRLT+EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY
Sbjct: 1046 ASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1105

Query: 1618 AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSV 1439
            AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSV
Sbjct: 1106 AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSV 1165

Query: 1438 THATEIWYDPDPMSTIIEEDVDFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLS 1259
            THATEIWYDPDP+ TIIEEDV+FV+SYYEMPDED+ P+KISPWLLRIELNREMMVDKKLS
Sbjct: 1166 THATEIWYDPDPLGTIIEEDVEFVRSYYEMPDEDVDPDKISPWLLRIELNREMMVDKKLS 1225

Query: 1258 MADIAEKINREFDDDLTCIFNDDNADKLILRIRIMNDDAPKGELQDESAEDDVFLKKIES 1079
            MADIAEKIN EFDDDL+CIFNDDNADKLILR+RI ND+APKGE+QDESAEDDVFLKKIES
Sbjct: 1226 MADIAEKINHEFDDDLSCIFNDDNADKLILRVRITNDEAPKGEIQDESAEDDVFLKKIES 1285

Query: 1078 NMLTEMALRGIPDINKVFIKSGKINRFDESEGFKSDVEWMLDTEGVNLLAVICHEDVDAT 899
            NMLTEMALRGIPDINKVFIK GK+N+F++++GFK D EWMLDTEGVNLLAV+CHEDVDAT
Sbjct: 1286 NMLTEMALRGIPDINKVFIKYGKVNKFEDNDGFKPDNEWMLDTEGVNLLAVMCHEDVDAT 1345

Query: 898  RTTSNHLIEVIEILGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 719
            RTTSNHLIEVIE+LGIEAVRR+LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT
Sbjct: 1346 RTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 1405

Query: 718  RHGINRNDTGPMMRCSFEETVDILLDAAVFAEADHLRGVTENIMLGQLAPIGTGSCALYL 539
            RHGINRNDTGP+MRCSFEETVDILLDAAV+AE+D+LRGVTENIMLGQLAPIGTG CALYL
Sbjct: 1406 RHGINRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYL 1465

Query: 538  NDQMLQQAIELQLPSYMDGGLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPITDA 359
            NDQMLQQAIELQLPSY++ GLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPITDA
Sbjct: 1466 NDQMLQQAIELQLPSYVE-GLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPITDA 1524

Query: 358  QFSPYVGGMAF 326
            QFSPYVGGMAF
Sbjct: 1525 QFSPYVGGMAF 1535


>ref|XP_004972809.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
            X1 [Setaria italica]
          Length = 1852

 Score = 2799 bits (7256), Expect = 0.0
 Identities = 1388/1512 (91%), Positives = 1448/1512 (95%), Gaps = 1/1512 (0%)
 Frame = -1

Query: 4858 EIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTIDRKMKCETCMANMAECPGHFGHLELA 4679
            EIRQMSV+Q+EH ETMERGKPKP GLSDPR+GTIDRK+KCETCMA MAECPGHFGHLELA
Sbjct: 27   EIRQMSVIQIEHAETMERGKPKPGGLSDPRLGTIDRKIKCETCMAGMAECPGHFGHLELA 86

Query: 4678 KPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAKFKQALKIRNPKNRLKRIYDACKSKKK 4499
            KPMFHIGF+KTVL+IMRCVCFNCSKILADEDD KFKQALKIRNPKNRLKRIYDACKSKK 
Sbjct: 87   KPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTKFKQALKIRNPKNRLKRIYDACKSKKV 146

Query: 4498 CAXXXXXXXXXXXXXDEPIKKTRNGCGAQQPNITIDGMKMVAEYKAPKKKSDEQEQLPEP 4319
            CA             DEP+KK R GCGAQQPNIT+DGMKMVAE+KAPKKK+D+Q+QLPEP
Sbjct: 147  CAGGDDLDVQEQQDTDEPVKK-RGGCGAQQPNITVDGMKMVAEFKAPKKKTDDQDQLPEP 205

Query: 4318 AERKQILSAERVLSVLKRITDDDCLLLGLNPKFARPDWMILQVLXXXXXXXXPSVMMDTS 4139
             ERKQILSAERVL+VLKRI+D+DCLLLGLNPKFARPDWMILQVL        PSVMMDTS
Sbjct: 206  VERKQILSAERVLNVLKRISDEDCLLLGLNPKFARPDWMILQVLPIPPPPVRPSVMMDTS 265

Query: 4138 SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNDLPGQPRAT 3959
            SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII+EFAQLLQFHIATYFDN+LPGQPRAT
Sbjct: 266  SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIITEFAQLLQFHIATYFDNELPGQPRAT 325

Query: 3958 QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 3779
            QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP INID+LGVPWSIALNLT
Sbjct: 326  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLT 385

Query: 3778 YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKV 3599
            YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRY+KKSSD HLELGYKV
Sbjct: 386  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKV 445

Query: 3598 ERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 3419
            ERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP
Sbjct: 446  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 505

Query: 3418 QSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW 3239
            QSFETRAEV+ELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDT IEKDVFMN LMW
Sbjct: 506  QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNTLMW 565

Query: 3238 WEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINLIRFSAWHAESEVGSITPGDTLVRI 3059
            W+DFDGKIPAPAILKPRP+WTGKQVFNLIIPKQINLIRFSAWH+E+E G ITPGDT+VRI
Sbjct: 566  WQDFDGKIPAPAILKPRPIWTGKQVFNLIIPKQINLIRFSAWHSETETGFITPGDTMVRI 625

Query: 3058 EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 2879
            EKGELLSGTLCKK+LGT +GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ  FSIGIG
Sbjct: 626  EKGELLSGTLCKKSLGTGSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQGFSIGIG 685

Query: 2878 DTIADAATMEKINETISKAKNDVKELIKLAQEKQLEAEPGRTMMESFENKVNQVLNKARD 2699
            DTIADAATMEKINETISKAKN+VKELIK AQ+K LEAEPGRTMMESFEN+VNQVLNKARD
Sbjct: 686  DTIADAATMEKINETISKAKNEVKELIKQAQDKHLEAEPGRTMMESFENRVNQVLNKARD 745

Query: 2698 DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFNERTLPHF 2519
            DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF +RTLPHF
Sbjct: 746  DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHF 805

Query: 2518 TKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 2339
            TKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED
Sbjct: 806  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 865

Query: 2338 IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFVHVFKYELDDDNWN 2159
            IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKK EF +VF+YELDD+NW 
Sbjct: 866  IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKGEFDNVFRYELDDENWR 925

Query: 2158 PSYMQPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDVTMPMPVNLKRLIWN 1979
            P+YM PEHV+DLKTIREFRNVF+AEVQKLEADR+QLGTEI TTGD + PMPVNLKRLIWN
Sbjct: 926  PNYMLPEHVDDLKTIREFRNVFEAEVQKLEADRFQLGTEITTTGDNSWPMPVNLKRLIWN 985

Query: 1978 AQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDFLSMEAQKNATLLFNILLRSTF 1799
            AQKTFKID RRPSDMHPMEIVEAIDKLQERLKVVPGDD +S+EAQKNATL FNILLRSTF
Sbjct: 986  AQKTFKIDFRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTF 1045

Query: 1798 ASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1619
            ASKRVLKEYRLT+EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY
Sbjct: 1046 ASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1105

Query: 1618 AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSV 1439
            AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSV
Sbjct: 1106 AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSV 1165

Query: 1438 THATEIWYDPDPMSTIIEEDVDFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLS 1259
            THATEIWYDPDP+ TIIEEDV+FV+SYYEMPDEDI P+KISPWLLRIELNREMM+DKKLS
Sbjct: 1166 THATEIWYDPDPLGTIIEEDVEFVRSYYEMPDEDIDPDKISPWLLRIELNREMMIDKKLS 1225

Query: 1258 MADIAEKINREFDDDLTCIFNDDNADKLILRIRIMNDDAPKGELQDESAEDDVFLKKIES 1079
            MADIAEKINREFDDDL+CIFNDDNADKLILRIRI NDDAPKGE+QDESAEDDVFLKKIE 
Sbjct: 1226 MADIAEKINREFDDDLSCIFNDDNADKLILRIRITNDDAPKGEIQDESAEDDVFLKKIEG 1285

Query: 1078 NMLTEMALRGIPDINKVFIKSGKINRFDESEGFKSDVEWMLDTEGVNLLAVICHEDVDAT 899
            NMLTEMALRGIPDINKVFIK GK+N+FD+SEGFK+D EWMLDTEGVNLLAV+CHEDVDAT
Sbjct: 1286 NMLTEMALRGIPDINKVFIKHGKVNKFDQSEGFKADNEWMLDTEGVNLLAVMCHEDVDAT 1345

Query: 898  RTTSNHLIEVIEILGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 719
            RTTSNHLIEVIE+LGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT
Sbjct: 1346 RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 1405

Query: 718  RHGINRNDTGPMMRCSFEETVDILLDAAVFAEADHLRGVTENIMLGQLAPIGTGSCALYL 539
            RHGINRNDTGP+MRCSFEETVDILLDAAV+AEAD LRGVTENIMLGQLAPIGTG CALYL
Sbjct: 1406 RHGINRNDTGPLMRCSFEETVDILLDAAVYAEADLLRGVTENIMLGQLAPIGTGGCALYL 1465

Query: 538  NDQMLQQAIELQLPSYMDGGLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPI-TD 362
            NDQMLQQAIELQLPSY++ GLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPI TD
Sbjct: 1466 NDQMLQQAIELQLPSYVE-GLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPINTD 1524

Query: 361  AQFSPYVGGMAF 326
            A FSPYVG MAF
Sbjct: 1525 ASFSPYVGHMAF 1536


>ref|XP_004972810.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
            X2 [Setaria italica]
          Length = 1852

 Score = 2797 bits (7251), Expect = 0.0
 Identities = 1387/1512 (91%), Positives = 1447/1512 (95%), Gaps = 1/1512 (0%)
 Frame = -1

Query: 4858 EIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTIDRKMKCETCMANMAECPGHFGHLELA 4679
            EIRQMSV+Q+EH ETMERGKPKP GLSDPR+GTIDRK+KCETCMA MAECPGHFGHLELA
Sbjct: 27   EIRQMSVIQIEHAETMERGKPKPGGLSDPRLGTIDRKIKCETCMAGMAECPGHFGHLELA 86

Query: 4678 KPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAKFKQALKIRNPKNRLKRIYDACKSKKK 4499
            KPMFHIGF+KTVL+IMRCVCFNCSKILADEDD KFKQALKIRNPKNRLKRIYDACKSKK 
Sbjct: 87   KPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTKFKQALKIRNPKNRLKRIYDACKSKKV 146

Query: 4498 CAXXXXXXXXXXXXXDEPIKKTRNGCGAQQPNITIDGMKMVAEYKAPKKKSDEQEQLPEP 4319
            CA             DEP+KK R GCGAQQPNIT+DGMKMVAE+KAPKKK+D+Q+QLPEP
Sbjct: 147  CAGGDDLDVQEQQDTDEPVKK-RGGCGAQQPNITVDGMKMVAEFKAPKKKTDDQDQLPEP 205

Query: 4318 AERKQILSAERVLSVLKRITDDDCLLLGLNPKFARPDWMILQVLXXXXXXXXPSVMMDTS 4139
             ERKQILSAERVL+VLKRI+D+DCLLLGLNPKFARPDWMILQVL        PSVMMDTS
Sbjct: 206  VERKQILSAERVLNVLKRISDEDCLLLGLNPKFARPDWMILQVLPIPPPPVRPSVMMDTS 265

Query: 4138 SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNDLPGQPRAT 3959
            SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII+EFAQLLQFHIATYFDN+LPGQPRAT
Sbjct: 266  SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIITEFAQLLQFHIATYFDNELPGQPRAT 325

Query: 3958 QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 3779
            QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP INID+LGVPWSIALNLT
Sbjct: 326  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLT 385

Query: 3778 YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKV 3599
            YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRY+KKSSD HL+LGYKV
Sbjct: 386  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLDLGYKV 445

Query: 3598 ERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 3419
            ERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP
Sbjct: 446  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 505

Query: 3418 QSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW 3239
            QSFETRAEV+ELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDT IEKDVFMNILMW
Sbjct: 506  QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMW 565

Query: 3238 WEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINLIRFSAWHAESEVGSITPGDTLVRI 3059
            W+DFDGKIPAPAILKPRP+WTGKQVFNLIIPKQINLIRFSAWH+E+E G ITPGDT+VRI
Sbjct: 566  WQDFDGKIPAPAILKPRPIWTGKQVFNLIIPKQINLIRFSAWHSETETGFITPGDTMVRI 625

Query: 3058 EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 2879
            EKGELLSGTLCKK+LGT +GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ  FSIGIG
Sbjct: 626  EKGELLSGTLCKKSLGTGSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQGFSIGIG 685

Query: 2878 DTIADAATMEKINETISKAKNDVKELIKLAQEKQLEAEPGRTMMESFENKVNQVLNKARD 2699
            DTIADAATMEKINETISKAKN+VKELIK A E  LEAEPGRTMMESFEN+VNQVLNKARD
Sbjct: 686  DTIADAATMEKINETISKAKNEVKELIKQAHENHLEAEPGRTMMESFENRVNQVLNKARD 745

Query: 2698 DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFNERTLPHF 2519
            DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF +RTLPHF
Sbjct: 746  DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHF 805

Query: 2518 TKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 2339
            TKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED
Sbjct: 806  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 865

Query: 2338 IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFVHVFKYELDDDNWN 2159
            IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKK EF +VF+YELDD+NW 
Sbjct: 866  IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKGEFDNVFRYELDDENWR 925

Query: 2158 PSYMQPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDVTMPMPVNLKRLIWN 1979
            P+YM PEHV+DLKTIREFRNVF+AEVQKLEADR+QLGTEI TTGD + PMPVNLKRLIWN
Sbjct: 926  PNYMLPEHVDDLKTIREFRNVFEAEVQKLEADRFQLGTEITTTGDNSWPMPVNLKRLIWN 985

Query: 1978 AQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDFLSMEAQKNATLLFNILLRSTF 1799
            AQKTFKID RRPSDMHPMEIVEAIDKLQERLKVVPGDD +S+EAQKNATL FNILLRSTF
Sbjct: 986  AQKTFKIDFRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTF 1045

Query: 1798 ASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1619
            ASKRVLKEYRLT+EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY
Sbjct: 1046 ASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1105

Query: 1618 AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSV 1439
            AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSV
Sbjct: 1106 AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSV 1165

Query: 1438 THATEIWYDPDPMSTIIEEDVDFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLS 1259
            THATEIWYDPDP+ TIIEEDV+FV+SYYEMPDEDI P+KISPWLLRIELNREMM+DKKLS
Sbjct: 1166 THATEIWYDPDPLGTIIEEDVEFVRSYYEMPDEDIDPDKISPWLLRIELNREMMIDKKLS 1225

Query: 1258 MADIAEKINREFDDDLTCIFNDDNADKLILRIRIMNDDAPKGELQDESAEDDVFLKKIES 1079
            MADIAEKINREFDDDL+CIFNDDNADKLILRIRI NDDAPKGE+QDESAEDDVFLKKIE 
Sbjct: 1226 MADIAEKINREFDDDLSCIFNDDNADKLILRIRITNDDAPKGEIQDESAEDDVFLKKIEG 1285

Query: 1078 NMLTEMALRGIPDINKVFIKSGKINRFDESEGFKSDVEWMLDTEGVNLLAVICHEDVDAT 899
            NMLTEMALRGIPDINKVFIK GK+N+FD+SEGFK+D EWMLDTEGVNLLAV+CHEDVDAT
Sbjct: 1286 NMLTEMALRGIPDINKVFIKHGKVNKFDQSEGFKADNEWMLDTEGVNLLAVMCHEDVDAT 1345

Query: 898  RTTSNHLIEVIEILGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 719
            RTTSNHLIEVIE+LGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT
Sbjct: 1346 RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 1405

Query: 718  RHGINRNDTGPMMRCSFEETVDILLDAAVFAEADHLRGVTENIMLGQLAPIGTGSCALYL 539
            RHGINRNDTGP+MRCSFEETVDILLDAAV+AEAD LRGVTENIMLGQLAPIGTG CALYL
Sbjct: 1406 RHGINRNDTGPLMRCSFEETVDILLDAAVYAEADLLRGVTENIMLGQLAPIGTGGCALYL 1465

Query: 538  NDQMLQQAIELQLPSYMDGGLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPI-TD 362
            NDQMLQQAIELQLPSY++ GLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPI TD
Sbjct: 1466 NDQMLQQAIELQLPSYVE-GLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPINTD 1524

Query: 361  AQFSPYVGGMAF 326
            A FSPYVG MAF
Sbjct: 1525 ASFSPYVGHMAF 1536


>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
            vinifera]
          Length = 1848

 Score = 2797 bits (7250), Expect = 0.0
 Identities = 1383/1511 (91%), Positives = 1444/1511 (95%)
 Frame = -1

Query: 4858 EIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTIDRKMKCETCMANMAECPGHFGHLELA 4679
            EIRQMSVVQ+EH ET ERGKPKP GLSDPR+GTIDRKMKCETC ANMAECPGHFGHLELA
Sbjct: 27   EIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELA 86

Query: 4678 KPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAKFKQALKIRNPKNRLKRIYDACKSKKK 4499
            KPMFHIGF+KTVL+IMRCVCFNCSKILADE+D KFKQA KIRNPKNRLK+I DACK+K K
Sbjct: 87   KPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHKFKQAQKIRNPKNRLKKILDACKNKSK 146

Query: 4498 CAXXXXXXXXXXXXXDEPIKKTRNGCGAQQPNITIDGMKMVAEYKAPKKKSDEQEQLPEP 4319
            C               EP+KK+R GCGAQQP +TI+GMKM+AEYK  +KK+D+ EQLPEP
Sbjct: 147  CEGGDEIETQALDSD-EPVKKSRGGCGAQQPKLTIEGMKMIAEYKIQRKKNDDPEQLPEP 205

Query: 4318 AERKQILSAERVLSVLKRITDDDCLLLGLNPKFARPDWMILQVLXXXXXXXXPSVMMDTS 4139
             ERKQ LSAERVL+VLKRI+D+DC+LLGLNPK+ARPDWMILQVL        PSVMMDTS
Sbjct: 206  VERKQQLSAERVLNVLKRISDEDCILLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS 265

Query: 4138 SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNDLPGQPRAT 3959
            SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFH+ATYFDN+LPGQPRAT
Sbjct: 266  SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHVATYFDNELPGQPRAT 325

Query: 3958 QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 3779
            QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID+LGVPWSIALNLT
Sbjct: 326  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLT 385

Query: 3778 YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKV 3599
            YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKV
Sbjct: 386  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKV 445

Query: 3598 ERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 3419
            ERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP
Sbjct: 446  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 505

Query: 3418 QSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW 3239
            QSFETRAEV+ELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW
Sbjct: 506  QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW 565

Query: 3238 WEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINLIRFSAWHAESEVGSITPGDTLVRI 3059
            WEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINL+R SAWH+ESE G ITPGDT VRI
Sbjct: 566  WEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINLLRTSAWHSESETGFITPGDTQVRI 625

Query: 3058 EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 2879
            EKGELL+GTLCKK LGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN FSIGIG
Sbjct: 626  EKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIG 685

Query: 2878 DTIADAATMEKINETISKAKNDVKELIKLAQEKQLEAEPGRTMMESFENKVNQVLNKARD 2699
            DTIADAATMEKINETISKAKN+VKELI+ AQE+QLEAEPGRTMMESFEN+VNQVLNKARD
Sbjct: 686  DTIADAATMEKINETISKAKNEVKELIRAAQERQLEAEPGRTMMESFENRVNQVLNKARD 745

Query: 2698 DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFNERTLPHF 2519
            DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF +RTLPHF
Sbjct: 746  DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHF 805

Query: 2518 TKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 2339
            TKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED
Sbjct: 806  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 865

Query: 2338 IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFVHVFKYELDDDNWN 2159
            IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+QKLDSLKMKK EF  VFKYE+DD+NWN
Sbjct: 866  IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKGEFDRVFKYEIDDENWN 925

Query: 2158 PSYMQPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDVTMPMPVNLKRLIWN 1979
            PSYM PEHVEDLKTIREFRNVFDAEVQKLEADR+QLGTEIATTGD + PMPVNLKRLIWN
Sbjct: 926  PSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWPMPVNLKRLIWN 985

Query: 1978 AQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDFLSMEAQKNATLLFNILLRSTF 1799
            AQKTFK+DLRRPSDMHPMEIVEA+DKLQERLKVVPGDD +SMEAQKNATL FNILLRSTF
Sbjct: 986  AQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDDLISMEAQKNATLFFNILLRSTF 1045

Query: 1798 ASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1619
            ASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY
Sbjct: 1046 ASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1105

Query: 1618 AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSV 1439
            AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKP+V+K KE AKNVQCALEYTTLRSV
Sbjct: 1106 AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPDVSKTKERAKNVQCALEYTTLRSV 1165

Query: 1438 THATEIWYDPDPMSTIIEEDVDFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLS 1259
            T ATE+WYDPDPMSTIIEEDVDFVKSYYEMPDE++APEKISPWLLRIELNREMMVDKKLS
Sbjct: 1166 TQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEVAPEKISPWLLRIELNREMMVDKKLS 1225

Query: 1258 MADIAEKINREFDDDLTCIFNDDNADKLILRIRIMNDDAPKGELQDESAEDDVFLKKIES 1079
            MADIAEKIN EFDDDLTCIFNDDNA+KLILRIRIMND+APKGELQDESAEDDVFLKKIES
Sbjct: 1226 MADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELQDESAEDDVFLKKIES 1285

Query: 1078 NMLTEMALRGIPDINKVFIKSGKINRFDESEGFKSDVEWMLDTEGVNLLAVICHEDVDAT 899
            NMLTEMALRGIPDINKVFIKSGK+N+FDESEGFK +VEWMLDTEGVNLLAV+CHEDVDA 
Sbjct: 1286 NMLTEMALRGIPDINKVFIKSGKVNKFDESEGFKPEVEWMLDTEGVNLLAVMCHEDVDAR 1345

Query: 898  RTTSNHLIEVIEILGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 719
            RTTSNHLIEVIE+LGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT
Sbjct: 1346 RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 1405

Query: 718  RHGINRNDTGPMMRCSFEETVDILLDAAVFAEADHLRGVTENIMLGQLAPIGTGSCALYL 539
            RHGINRNDTGPMMRCSFEETVDILLDAAV+AE D LRGVTENIMLGQLAPIGTG CALYL
Sbjct: 1406 RHGINRNDTGPMMRCSFEETVDILLDAAVYAETDFLRGVTENIMLGQLAPIGTGDCALYL 1465

Query: 538  NDQMLQQAIELQLPSYMDGGLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPITDA 359
            NDQMLQ AIELQLPSYM+ GLDFGMTP+RSPI+GTPYH+GMMSP+YLLSPN+R SPITDA
Sbjct: 1466 NDQMLQHAIELQLPSYME-GLDFGMTPSRSPITGTPYHDGMMSPNYLLSPNLRLSPITDA 1524

Query: 358  QFSPYVGGMAF 326
            QFSPYVGGMAF
Sbjct: 1525 QFSPYVGGMAF 1535


>ref|XP_002443877.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
            gi|241940227|gb|EES13372.1| hypothetical protein
            SORBIDRAFT_07g003680 [Sorghum bicolor]
          Length = 1857

 Score = 2777 bits (7199), Expect = 0.0
 Identities = 1377/1512 (91%), Positives = 1443/1512 (95%), Gaps = 1/1512 (0%)
 Frame = -1

Query: 4858 EIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTIDRKMKCETCMANMAECPGHFGHLELA 4679
            EIRQMSVVQ+EH ETMERGKPKP GLSDPR+GTIDRK+KCETCMA MAECPGHFGHLELA
Sbjct: 27   EIRQMSVVQIEHAETMERGKPKPGGLSDPRLGTIDRKIKCETCMAGMAECPGHFGHLELA 86

Query: 4678 KPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAKFKQALKIRNPKNRLKRIYDACKSKKK 4499
            KPMFHIGF+KTVL+IMRCVCFNCSKILADED+ KFKQALKIRNPKNRLKRIYDACKSKK 
Sbjct: 87   KPMFHIGFIKTVLSIMRCVCFNCSKILADEDETKFKQALKIRNPKNRLKRIYDACKSKKV 146

Query: 4498 CAXXXXXXXXXXXXXDEPIKKTRNGCGAQQPNITIDGMKMVAEYKAPKKKSDEQEQLPEP 4319
            CA              EP+KK R GCGAQQPNIT+DGMKMVAE+KAPKKKSD+Q+QLPEP
Sbjct: 147  CAGGDDLDVQEQDTD-EPVKK-RGGCGAQQPNITVDGMKMVAEFKAPKKKSDDQDQLPEP 204

Query: 4318 AERKQILSAERVLSVLKRITDDDCLLLGLNPKFARPDWMILQVLXXXXXXXXPSVMMDTS 4139
             ERKQILSAERVL+VLKRI+D+DCLLLGLNPK+ARPDWMILQVL        PSVMMDTS
Sbjct: 205  VERKQILSAERVLNVLKRISDEDCLLLGLNPKYARPDWMILQVLPVPPPPVRPSVMMDTS 264

Query: 4138 SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNDLPGQPRAT 3959
            SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII+EFAQLLQFHIATYFDN+LPGQPRAT
Sbjct: 265  SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIITEFAQLLQFHIATYFDNELPGQPRAT 324

Query: 3958 QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 3779
            QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP INID+LGVPWSIALNLT
Sbjct: 325  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLT 384

Query: 3778 YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKV 3599
            YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRY+KKSSD HLELGYKV
Sbjct: 385  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKV 444

Query: 3598 ERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 3419
            ERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP
Sbjct: 445  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 504

Query: 3418 QSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW 3239
            QSFETRAEV+ELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDT IEKDVFMNILMW
Sbjct: 505  QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMW 564

Query: 3238 WEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINLIRFSAWHAESEVGSITPGDTLVRI 3059
            W+DFDGKIPAPAILKPRP+WTGKQVFNLIIPKQINLIRFSAWH+E E G ITPGDT+VRI
Sbjct: 565  WQDFDGKIPAPAILKPRPIWTGKQVFNLIIPKQINLIRFSAWHSEEEKGFITPGDTMVRI 624

Query: 3058 EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 2879
            EKGELLSGTLCKK+LGT TGSLIH+IWEEVGPDAARKFLGHTQWLVNYWLLQN FSIGIG
Sbjct: 625  EKGELLSGTLCKKSLGTGTGSLIHIIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIG 684

Query: 2878 DTIADAATMEKINETISKAKNDVKELIKLAQEKQLEAEPGRTMMESFENKVNQVLNKARD 2699
            DTIADA+TM+ IN+TI KAK++VKELIK A EKQLEAEPGRTMMESFEN+VNQVLNKARD
Sbjct: 685  DTIADASTMQTINDTICKAKDEVKELIKKAHEKQLEAEPGRTMMESFENRVNQVLNKARD 744

Query: 2698 DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFNERTLPHF 2519
            DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF +RTLPHF
Sbjct: 745  DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHF 804

Query: 2518 TKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 2339
            TKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED
Sbjct: 805  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 864

Query: 2338 IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFVHVFKYELDDDNWN 2159
            IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKK EF ++F+YELDD+NW 
Sbjct: 865  IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDNLFRYELDDENWR 924

Query: 2158 PSYMQPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDVTMPMPVNLKRLIWN 1979
            P+YM PEHV+DLKTIREFRNVF+AEVQKLEADRYQLGTEIATTGD + PMPVNLKRLIWN
Sbjct: 925  PNYMLPEHVDDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWN 984

Query: 1978 AQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDFLSMEAQKNATLLFNILLRSTF 1799
            AQKTF+ID RRPSDMHPMEIVEA+DKLQERLKVVPGDD +S+EAQKNATL FNILLRSTF
Sbjct: 985  AQKTFRIDFRRPSDMHPMEIVEAVDKLQERLKVVPGDDPMSIEAQKNATLFFNILLRSTF 1044

Query: 1798 ASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1619
            ASKRVLKEYRLT+EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY
Sbjct: 1045 ASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1104

Query: 1618 AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSV 1439
            AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVN+KKELAKNVQCALEYTTLRSV
Sbjct: 1105 AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNQKKELAKNVQCALEYTTLRSV 1164

Query: 1438 THATEIWYDPDPMSTIIEEDVDFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLS 1259
            THATEIWYDPDP+ TIIEED +FV+SYYEMPDEDI P+KISPWLLRIELNREMMVDKKLS
Sbjct: 1165 THATEIWYDPDPLGTIIEEDAEFVQSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLS 1224

Query: 1258 MADIAEKINREFDDDLTCIFNDDNADKLILRIRIMNDDAPKGELQDESAEDDVFLKKIES 1079
            MADIA+KINREFDDDL+CIFNDDNADKLILRIRI ND+APKGE+QDESAEDDVFLKKIE 
Sbjct: 1225 MADIADKINREFDDDLSCIFNDDNADKLILRIRITNDEAPKGEIQDESAEDDVFLKKIEG 1284

Query: 1078 NMLTEMALRGIPDINKVFIKSGKINRFDESEGFKSDVEWMLDTEGVNLLAVICHEDVDAT 899
            NMLTEMALRGIPDINKVFIK GK+N F + EGFK+  EWMLDTEGVNLLAV+CHEDVDAT
Sbjct: 1285 NMLTEMALRGIPDINKVFIKEGKVNTFYQDEGFKAANEWMLDTEGVNLLAVMCHEDVDAT 1344

Query: 898  RTTSNHLIEVIEILGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 719
            RTTSNHLIEVIE+LGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT
Sbjct: 1345 RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 1404

Query: 718  RHGINRNDTGPMMRCSFEETVDILLDAAVFAEADHLRGVTENIMLGQLAPIGTGSCALYL 539
            RHGINRNDTGP+MRCSFEETVDILLDAAV+AE+DHLRGVTENIMLGQLAPIGTG CALYL
Sbjct: 1405 RHGINRNDTGPLMRCSFEETVDILLDAAVYAESDHLRGVTENIMLGQLAPIGTGGCALYL 1464

Query: 538  NDQMLQQAIELQLPSYMDGGLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPI-TD 362
            NDQMLQQAIELQLPSY++ GLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPI TD
Sbjct: 1465 NDQMLQQAIELQLPSYVE-GLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPINTD 1523

Query: 361  AQFSPYVGGMAF 326
            A FSPYVG MAF
Sbjct: 1524 ASFSPYVGHMAF 1535


>gb|AFW57310.1| RNA polymerase II large subunit family protein [Zea mays]
          Length = 1850

 Score = 2774 bits (7192), Expect = 0.0
 Identities = 1377/1512 (91%), Positives = 1440/1512 (95%), Gaps = 1/1512 (0%)
 Frame = -1

Query: 4858 EIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTIDRKMKCETCMANMAECPGHFGHLELA 4679
            EIRQMSV+Q+EH ETMERGKPKP GLSDPR+GTIDRK+KCETCMA MAECPGHFGHLELA
Sbjct: 27   EIRQMSVIQIEHAETMERGKPKPGGLSDPRLGTIDRKIKCETCMAGMAECPGHFGHLELA 86

Query: 4678 KPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAKFKQALKIRNPKNRLKRIYDACKSKKK 4499
            KPMFHIGF+KTVL+IMRCVCFNCSKILADED+ KFKQALKIRNPKNRLKRIYDACKSKK 
Sbjct: 87   KPMFHIGFIKTVLSIMRCVCFNCSKILADEDETKFKQALKIRNPKNRLKRIYDACKSKKV 146

Query: 4498 CAXXXXXXXXXXXXXDEPIKKTRNGCGAQQPNITIDGMKMVAEYKAPKKKSDEQEQLPEP 4319
            CA              EPIKK R GCGAQQPNIT+DGMKMVAE+KAPKKK+D+Q+QLPEP
Sbjct: 147  CAGGDDLDVQEQDTD-EPIKK-RGGCGAQQPNITVDGMKMVAEFKAPKKKTDDQDQLPEP 204

Query: 4318 AERKQILSAERVLSVLKRITDDDCLLLGLNPKFARPDWMILQVLXXXXXXXXPSVMMDTS 4139
             ERKQILSAERVL+VLKRI+D+DCLLLGLNPK+ARPDWMILQVL        PSVMMDTS
Sbjct: 205  VERKQILSAERVLNVLKRISDEDCLLLGLNPKYARPDWMILQVLPVPPPPVRPSVMMDTS 264

Query: 4138 SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNDLPGQPRAT 3959
            SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII+EFAQLLQFHIATYFDNDLPGQPRAT
Sbjct: 265  SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIITEFAQLLQFHIATYFDNDLPGQPRAT 324

Query: 3958 QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 3779
            QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP INID+LGVPWSIALNLT
Sbjct: 325  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLT 384

Query: 3778 YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKV 3599
            YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRY+KKSSD HLELGYKV
Sbjct: 385  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKV 444

Query: 3598 ERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 3419
            ERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP
Sbjct: 445  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 504

Query: 3418 QSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW 3239
            QSFETRAEV+ELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDT IEKDVFMNILMW
Sbjct: 505  QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMW 564

Query: 3238 WEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINLIRFSAWHAESEVGSITPGDTLVRI 3059
            W+DFDGKIPAP ILKPRP+WTGKQVFNLIIPKQINLIRFSAWH+E E G ITPGDT+VRI
Sbjct: 565  WQDFDGKIPAPTILKPRPIWTGKQVFNLIIPKQINLIRFSAWHSEEEKGFITPGDTMVRI 624

Query: 3058 EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 2879
            EKGELLSGTLCKK+LGT +GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN FSIGIG
Sbjct: 625  EKGELLSGTLCKKSLGTGSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIG 684

Query: 2878 DTIADAATMEKINETISKAKNDVKELIKLAQEKQLEAEPGRTMMESFENKVNQVLNKARD 2699
            DTIADA+TME IN+TISKAKN VKELIK A EKQLEAEPGRTMMESFEN+VNQVLNKARD
Sbjct: 685  DTIADASTMETINDTISKAKNAVKELIKKAHEKQLEAEPGRTMMESFENRVNQVLNKARD 744

Query: 2698 DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFNERTLPHF 2519
            DAGSSAQ SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF +RTLPHF
Sbjct: 745  DAGSSAQNSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHF 804

Query: 2518 TKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 2339
            TKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED
Sbjct: 805  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 864

Query: 2338 IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFVHVFKYELDDDNWN 2159
            IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKK EF +VF+YELDD+NW 
Sbjct: 865  IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDNVFRYELDDENWR 924

Query: 2158 PSYMQPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDVTMPMPVNLKRLIWN 1979
            P+YM PEHV+DLKTIREFRNVF+AEVQKLEADRYQLG+EI TTGD + PMPVNLKRLIWN
Sbjct: 925  PNYMLPEHVDDLKTIREFRNVFEAEVQKLEADRYQLGSEITTTGDNSWPMPVNLKRLIWN 984

Query: 1978 AQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDFLSMEAQKNATLLFNILLRSTF 1799
            AQKTFKID RRPSDMHPMEIVEAIDKLQERLKVVPGDD +S+EAQKNATL FNILLRSTF
Sbjct: 985  AQKTFKIDFRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTF 1044

Query: 1798 ASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1619
            ASKRVLKEYRLT+EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY
Sbjct: 1045 ASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1104

Query: 1618 AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSV 1439
            AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKP+VN+KKELAKNVQCALEYTTLRSV
Sbjct: 1105 AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPQVNQKKELAKNVQCALEYTTLRSV 1164

Query: 1438 THATEIWYDPDPMSTIIEEDVDFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLS 1259
            THATEIWYDPDP+ TIIEED +FV+SYYEMPDEDI P+KISPWLLRIELNREMMVDKKLS
Sbjct: 1165 THATEIWYDPDPLGTIIEEDTEFVQSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLS 1224

Query: 1258 MADIAEKINREFDDDLTCIFNDDNADKLILRIRIMNDDAPKGELQDESAEDDVFLKKIES 1079
            MADIAEKINREFDDDL+CIFNDDNADKLILRIRI ND+APKGE+QDESAEDDVFLKKIE 
Sbjct: 1225 MADIAEKINREFDDDLSCIFNDDNADKLILRIRITNDEAPKGEIQDESAEDDVFLKKIEG 1284

Query: 1078 NMLTEMALRGIPDINKVFIKSGKINRFDESEGFKSDVEWMLDTEGVNLLAVICHEDVDAT 899
            NMLTEMALRGIPDINKVFIK GK+N F + +GFK+  EWMLDTEGVNLLAV+CHEDVDAT
Sbjct: 1285 NMLTEMALRGIPDINKVFIKEGKVNTFYQDDGFKAANEWMLDTEGVNLLAVMCHEDVDAT 1344

Query: 898  RTTSNHLIEVIEILGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 719
            RTTSNHLIEVIE+LGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT
Sbjct: 1345 RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 1404

Query: 718  RHGINRNDTGPMMRCSFEETVDILLDAAVFAEADHLRGVTENIMLGQLAPIGTGSCALYL 539
            RHGINRNDTGP+MRCSFEETVDILLDAAV+AE+DHLRGVTENIMLGQLAPIGTG CALYL
Sbjct: 1405 RHGINRNDTGPLMRCSFEETVDILLDAAVYAESDHLRGVTENIMLGQLAPIGTGGCALYL 1464

Query: 538  NDQMLQQAIELQLPSYMDGGLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPI-TD 362
            NDQMLQQAIELQLPSY++ GLDFGMTPARSPI+GTPYHEGMMSPSYLLSPNIRASPI TD
Sbjct: 1465 NDQMLQQAIELQLPSYVE-GLDFGMTPARSPITGTPYHEGMMSPSYLLSPNIRASPINTD 1523

Query: 361  AQFSPYVGGMAF 326
            A FSPYVG MAF
Sbjct: 1524 ASFSPYVGHMAF 1535


>ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [Amborella trichopoda]
            gi|548833823|gb|ERM96260.1| hypothetical protein
            AMTR_s00001p00152770 [Amborella trichopoda]
          Length = 1844

 Score = 2771 bits (7182), Expect = 0.0
 Identities = 1369/1513 (90%), Positives = 1448/1513 (95%), Gaps = 2/1513 (0%)
 Frame = -1

Query: 4858 EIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTIDRKMKCETCMANMAECPGHFGHLELA 4679
            EIR MSVV+++H ETMERGKPKP+GLSDPR+GTIDRKMKC+TC ANMAECPGHFGHLELA
Sbjct: 27   EIRNMSVVEIQHSETMERGKPKPSGLSDPRLGTIDRKMKCDTCTANMAECPGHFGHLELA 86

Query: 4678 KPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAKFKQALKIRNPKNRLKRIYDACKSKKK 4499
            KPMFHIGFLKTVL+IMRCVCFNCS+ILADE+D +FKQALKIRNPK RLK++ D CK+K K
Sbjct: 87   KPMFHIGFLKTVLSIMRCVCFNCSRILADEEDHRFKQALKIRNPKTRLKKVLDCCKNKTK 146

Query: 4498 CAXXXXXXXXXXXXXDEPIKKTRNG-CGAQQPNITIDGMKMVAEYKAPKKKSDEQEQ-LP 4325
            C              +E +KK R+G CGAQQP ITI+GMKMVAEYK P+KK+DEQEQ LP
Sbjct: 147  CEGGDDIDEDQAQDSEEVVKKKRHGGCGAQQPKITIEGMKMVAEYKLPRKKNDEQEQMLP 206

Query: 4324 EPAERKQILSAERVLSVLKRITDDDCLLLGLNPKFARPDWMILQVLXXXXXXXXPSVMMD 4145
            EP ERKQ L+AE+VL+VLKRITD+DC LLGLNPK+ARPDWMILQV+        PSVMMD
Sbjct: 207  EPVERKQQLAAEKVLNVLKRITDEDCQLLGLNPKYARPDWMILQVMPIPPPPVRPSVMMD 266

Query: 4144 TSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNDLPGQPR 3965
            TSSRSEDDLTHQLAM+IRHNENL+RQE+NGAPAHIISEFAQLLQFH+ATYFDN+LPGQPR
Sbjct: 267  TSSRSEDDLTHQLAMVIRHNENLKRQEKNGAPAHIISEFAQLLQFHVATYFDNELPGQPR 326

Query: 3964 ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 3785
            ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID+LGVPWSIALN
Sbjct: 327  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALN 386

Query: 3784 LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGY 3605
            LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKS DHHLELGY
Sbjct: 387  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSGDHHLELGY 446

Query: 3604 KVERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 3425
            KVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH
Sbjct: 447  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 506

Query: 3424 VPQSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 3245
            VPQSFETRAEV+ELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL
Sbjct: 507  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 566

Query: 3244 MWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINLIRFSAWHAESEVGSITPGDTLV 3065
            MWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINLIR+SAWH+ESE G ITPGDT V
Sbjct: 567  MWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINLIRYSAWHSESESGFITPGDTCV 626

Query: 3064 RIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIG 2885
            RIE+GELLSGTLCKK LGTS+GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ AFSIG
Sbjct: 627  RIERGELLSGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIG 686

Query: 2884 IGDTIADAATMEKINETISKAKNDVKELIKLAQEKQLEAEPGRTMMESFENKVNQVLNKA 2705
            IGDTIADAATMEKINETISKAKN+VKELIK AQEKQLEAEPGRTMMESFEN+VNQVLNKA
Sbjct: 687  IGDTIADAATMEKINETISKAKNEVKELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKA 746

Query: 2704 RDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFNERTLP 2525
            RDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFN+RTLP
Sbjct: 747  RDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFNDRTLP 806

Query: 2524 HFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 2345
            HFTKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM
Sbjct: 807  HFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 866

Query: 2344 EDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFVHVFKYELDDDN 2165
            EDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMK+AEF +V+KYE+D +N
Sbjct: 867  EDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRAEFENVYKYEIDQEN 926

Query: 2164 WNPSYMQPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDVTMPMPVNLKRLI 1985
            W+PSYM PEHVEDLKTIREF+NVFDAEVQKLEADR+QLGTEI TTGD + PMPVNLKRLI
Sbjct: 927  WSPSYMLPEHVEDLKTIREFQNVFDAEVQKLEADRHQLGTEITTTGDNSWPMPVNLKRLI 986

Query: 1984 WNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDFLSMEAQKNATLLFNILLRS 1805
            WNAQK FK+DLRRPSDMHPMEIVEA+DKLQERLKVVPGDD +S+EAQKNATL FNILLRS
Sbjct: 987  WNAQKMFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDDLMSIEAQKNATLFFNILLRS 1046

Query: 1804 TFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTF 1625
            TFASKRVLKEYRLTREAF+WVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTF
Sbjct: 1047 TFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTF 1106

Query: 1624 HYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLR 1445
            HYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK EVNK KE AKNVQCALEYTTLR
Sbjct: 1107 HYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKHEVNKTKEKAKNVQCALEYTTLR 1166

Query: 1444 SVTHATEIWYDPDPMSTIIEEDVDFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKK 1265
            SVT ATE+WYDPDPMSTIIEEDVDFV+SYYEMPDE++APEKISPWLLRIELNREMMVDKK
Sbjct: 1167 SVTEATEVWYDPDPMSTIIEEDVDFVRSYYEMPDEEVAPEKISPWLLRIELNREMMVDKK 1226

Query: 1264 LSMADIAEKINREFDDDLTCIFNDDNADKLILRIRIMNDDAPKGELQDESAEDDVFLKKI 1085
            LSMADIAEKIN EFDDDLTCIFNDDNA+KLILRIRIMND+APKGELQDES+EDDVFLKKI
Sbjct: 1227 LSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELQDESSEDDVFLKKI 1286

Query: 1084 ESNMLTEMALRGIPDINKVFIKSGKINRFDESEGFKSDVEWMLDTEGVNLLAVICHEDVD 905
            ESNMLTEMALRGIPDINKVFIKSGKIN+FDE+EGFK ++EWMLDTEGVNLLAV+C+E+VD
Sbjct: 1287 ESNMLTEMALRGIPDINKVFIKSGKINKFDENEGFKPEIEWMLDTEGVNLLAVMCNEEVD 1346

Query: 904  ATRTTSNHLIEVIEILGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMA 725
            ATRTTSNHLIEVI++LGIEAVRR+LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMA
Sbjct: 1347 ATRTTSNHLIEVIQVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMA 1406

Query: 724  ITRHGINRNDTGPMMRCSFEETVDILLDAAVFAEADHLRGVTENIMLGQLAPIGTGSCAL 545
            ITRHGINRNDTGPMMRCSFEETVDILLDAAV+AEADHLRGVTENIMLGQLAPIGTG CAL
Sbjct: 1407 ITRHGINRNDTGPMMRCSFEETVDILLDAAVYAEADHLRGVTENIMLGQLAPIGTGDCAL 1466

Query: 544  YLNDQMLQQAIELQLPSYMDGGLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPIT 365
            YLNDQMLQQAIELQLPSYM+ G+DFGMTP+RSP++GTPYHEGMMSP YLLSPN+R+SPIT
Sbjct: 1467 YLNDQMLQQAIELQLPSYME-GMDFGMTPSRSPMTGTPYHEGMMSP-YLLSPNMRSSPIT 1524

Query: 364  DAQFSPYVGGMAF 326
            DAQFSPYVGGMAF
Sbjct: 1525 DAQFSPYVGGMAF 1537


>gb|EMS50869.1| DNA-directed RNA polymerase II subunit RPB1 [Triticum urartu]
          Length = 2040

 Score = 2767 bits (7172), Expect = 0.0
 Identities = 1375/1512 (90%), Positives = 1439/1512 (95%), Gaps = 1/1512 (0%)
 Frame = -1

Query: 4858 EIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTIDRKMKCETCMANMAECPGHFGHLELA 4679
            EIRQMSVV +EH ETMERGK KP GLSDPR+GTIDRK+KC+TCMA MAECPGHFGHLELA
Sbjct: 27   EIRQMSVVVIEHAETMERGKAKPGGLSDPRLGTIDRKIKCDTCMAGMAECPGHFGHLELA 86

Query: 4678 KPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAKFKQALKIRNPKNRLKRIYDACKSKKK 4499
            KPMFHIGF+KTVL+IMRCVCFNCSKILADEDD KFKQALKIRNPKNRL+RIYDACKSKK 
Sbjct: 87   KPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTKFKQALKIRNPKNRLRRIYDACKSKKI 146

Query: 4498 CAXXXXXXXXXXXXXDEPIKKTRNGCGAQQPNITIDGMKMVAEYKAPKKKSDEQEQLPEP 4319
            CA             DEP+KK R GCGAQQPNIT+DGMKMVAE+KA KKKSD+Q+QLPEP
Sbjct: 147  CAGGDELEVQDQQDADEPVKK-RGGCGAQQPNITVDGMKMVAEFKATKKKSDDQDQLPEP 205

Query: 4318 AERKQILSAERVLSVLKRITDDDCLLLGLNPKFARPDWMILQVLXXXXXXXXPSVMMDTS 4139
             ERKQILSAERVL+VLKRI+D+DCLLLGLNPKFARPDWMILQVL        PSVMMDTS
Sbjct: 206  VERKQILSAERVLNVLKRISDEDCLLLGLNPKFARPDWMILQVLPIPPPPVRPSVMMDTS 265

Query: 4138 SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNDLPGQPRAT 3959
            SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII+EFAQLLQFHIATYFDNDLPGQPRAT
Sbjct: 266  SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIITEFAQLLQFHIATYFDNDLPGQPRAT 325

Query: 3958 QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 3779
            QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP INIDQLGVPWSIALNLT
Sbjct: 326  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDQLGVPWSIALNLT 385

Query: 3778 YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKV 3599
            YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRY+KKSSD HLELGYKV
Sbjct: 386  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKV 445

Query: 3598 ERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 3419
            ERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP
Sbjct: 446  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 505

Query: 3418 QSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW 3239
            QSFETRAEV+ELMMVPKCIVSPQ+NRPVMGIVQDTLLGCRKITKRDT IEKDVFMNILMW
Sbjct: 506  QSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMW 565

Query: 3238 WEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINLIRFSAWHAESEVGSITPGDTLVRI 3059
            WEDFDGK+PAPAIL+PRP+WTGKQVFNLIIPK INLIRFSAWHAE+E G ITPGDT+VRI
Sbjct: 566  WEDFDGKVPAPAILRPRPIWTGKQVFNLIIPKLINLIRFSAWHAETESGFITPGDTMVRI 625

Query: 3058 EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 2879
            EKGELLSGTLCKK LGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN FSIGIG
Sbjct: 626  EKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIG 685

Query: 2878 DTIADAATMEKINETISKAKNDVKELIKLAQEKQLEAEPGRTMMESFENKVNQVLNKARD 2699
            DTIADAATMEKINETI  AKN+VKELIK AQEK LE EPGRTMMESFEN+VNQVLNKARD
Sbjct: 686  DTIADAATMEKINETIGTAKNEVKELIKQAQEKNLEPEPGRTMMESFENRVNQVLNKARD 745

Query: 2698 DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFNERTLPHF 2519
            DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF +RTLPHF
Sbjct: 746  DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHF 805

Query: 2518 TKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 2339
            TKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED
Sbjct: 806  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 865

Query: 2338 IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFVHVFKYELDDDNWN 2159
            IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEF +VF+YELDD+NW 
Sbjct: 866  IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFDNVFRYELDDENWR 925

Query: 2158 PSYMQPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDVTMPMPVNLKRLIWN 1979
            P+YM P+HV+DLKTIREFRNVF+AEVQKLEADR QLGTEI TTGD T PMPVNLKRLIWN
Sbjct: 926  PTYMLPDHVDDLKTIREFRNVFEAEVQKLEADRLQLGTEITTTGDNTWPMPVNLKRLIWN 985

Query: 1978 AQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDFLSMEAQKNATLLFNILLRSTF 1799
            AQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDD +S+EAQKNATL FNILLRSTF
Sbjct: 986  AQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTF 1045

Query: 1798 ASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1619
            ASKRVLKEYRLT+E+FEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY
Sbjct: 1046 ASKRVLKEYRLTKESFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1105

Query: 1618 AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSV 1439
            AGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LKPEV+KKKELAKNVQCALEYTTLRSV
Sbjct: 1106 AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSV 1165

Query: 1438 THATEIWYDPDPMSTIIEEDVDFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLS 1259
            THATEIWYDPDP+ TIIEEDV+FV+SYYEMPDEDI P+KISPWLLRIELNREMMVDKKLS
Sbjct: 1166 THATEIWYDPDPLGTIIEEDVEFVRSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLS 1225

Query: 1258 MADIAEKINREFDDDLTCIFNDDNADKLILRIRIMNDDAPKGELQDESAEDDVFLKKIES 1079
            MADIAEKIN EFDDDL+CIFNDDNADKLILR+RI ND+APKGE+QDESAEDDVFLKKIE 
Sbjct: 1226 MADIAEKINHEFDDDLSCIFNDDNADKLILRVRITNDEAPKGEIQDESAEDDVFLKKIEG 1285

Query: 1078 NMLTEMALRGIPDINKVFIKSGKINRFDESEGFKSDVEWMLDTEGVNLLAVICHEDVDAT 899
            NMLTEMALRGIPDINKVFIK GK+N+FDESEGFK D EWMLDTEGVNLLAV+CHEDVD+T
Sbjct: 1286 NMLTEMALRGIPDINKVFIKYGKVNKFDESEGFKPDNEWMLDTEGVNLLAVMCHEDVDST 1345

Query: 898  RTTSNHLIEVIEILGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 719
            RTTSNHLIEVIE+LGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT
Sbjct: 1346 RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 1405

Query: 718  RHGINRNDTGPMMRCSFEETVDILLDAAVFAEADHLRGVTENIMLGQLAPIGTGSCALYL 539
            RHGINRNDTGP+MRCSFEETVDILLDAAV+AE+D+LRGVTENIMLGQLAPIGTG C LYL
Sbjct: 1406 RHGINRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCGLYL 1465

Query: 538  NDQMLQQAIELQLPSYMDGGLDFGMTPARSPISGTPYHE-GMMSPSYLLSPNIRASPITD 362
            NDQMLQQAIELQLPSY++ GLD+GMTPARSP+S TPY + GMMSP  +LSPN RASPITD
Sbjct: 1466 NDQMLQQAIELQLPSYVE-GLDYGMTPARSPMSATPYRDGGMMSP--MLSPNFRASPITD 1522

Query: 361  AQFSPYVGGMAF 326
            AQFSPYVGGMAF
Sbjct: 1523 AQFSPYVGGMAF 1534


>gb|EMT20712.1| DNA-directed RNA polymerase II subunit RPB1 [Aegilops tauschii]
          Length = 1861

 Score = 2764 bits (7165), Expect = 0.0
 Identities = 1373/1512 (90%), Positives = 1439/1512 (95%), Gaps = 1/1512 (0%)
 Frame = -1

Query: 4858 EIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTIDRKMKCETCMANMAECPGHFGHLELA 4679
            EIRQMSVV +EH ETMERGK KP GLSDPR+GTIDRK+KC+TCMA MAECPGHFGHLELA
Sbjct: 27   EIRQMSVVVIEHAETMERGKAKPGGLSDPRLGTIDRKIKCDTCMAGMAECPGHFGHLELA 86

Query: 4678 KPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAKFKQALKIRNPKNRLKRIYDACKSKKK 4499
            KPMFHIGF+KTVL+IMRCVCFNCSKILADE+D KFKQALKIRNPKNRL+RIYDACKSKK 
Sbjct: 87   KPMFHIGFIKTVLSIMRCVCFNCSKILADEEDTKFKQALKIRNPKNRLRRIYDACKSKKI 146

Query: 4498 CAXXXXXXXXXXXXXDEPIKKTRNGCGAQQPNITIDGMKMVAEYKAPKKKSDEQEQLPEP 4319
            CA             DEP+KK R GCGAQQPNIT+DGMKMVAE+KA KKKSD+Q+QLPEP
Sbjct: 147  CAGGDELEVQDQQDADEPVKK-RGGCGAQQPNITVDGMKMVAEFKATKKKSDDQDQLPEP 205

Query: 4318 AERKQILSAERVLSVLKRITDDDCLLLGLNPKFARPDWMILQVLXXXXXXXXPSVMMDTS 4139
             ERKQILSAERVL+VLKRI+D+DCLLLGLNPK+ARPDWMILQVL        PSVMMDTS
Sbjct: 206  VERKQILSAERVLNVLKRISDEDCLLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS 265

Query: 4138 SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNDLPGQPRAT 3959
            SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII+EFAQLLQFHIATYFDNDLPGQPRAT
Sbjct: 266  SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIITEFAQLLQFHIATYFDNDLPGQPRAT 325

Query: 3958 QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 3779
            QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP INIDQLGVPWSIALNLT
Sbjct: 326  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDQLGVPWSIALNLT 385

Query: 3778 YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKV 3599
            YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRY+KKSSD HLELGYKV
Sbjct: 386  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKV 445

Query: 3598 ERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 3419
            ERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP
Sbjct: 446  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 505

Query: 3418 QSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW 3239
            QSFETRAEV+ELMMVPKCIVSPQ+NRPVMGIVQDTLLGCRKITKRDT IEKDVFMNILMW
Sbjct: 506  QSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMW 565

Query: 3238 WEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINLIRFSAWHAESEVGSITPGDTLVRI 3059
            WEDFDGK+PAPAIL+PRP+WTGKQVFNLIIPK INLIRFSAWHAE+E G ITPGDT+VRI
Sbjct: 566  WEDFDGKVPAPAILRPRPIWTGKQVFNLIIPKLINLIRFSAWHAETESGFITPGDTMVRI 625

Query: 3058 EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 2879
            EKGELLSGTLCKK LGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN FSIGIG
Sbjct: 626  EKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIG 685

Query: 2878 DTIADAATMEKINETISKAKNDVKELIKLAQEKQLEAEPGRTMMESFENKVNQVLNKARD 2699
            DTIADAATMEKINETI  AKN+VKELIK AQEK LE EPGRTMMESFEN+VNQVLNKARD
Sbjct: 686  DTIADAATMEKINETIGTAKNEVKELIKQAQEKNLEPEPGRTMMESFENRVNQVLNKARD 745

Query: 2698 DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFNERTLPHF 2519
            DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF +RTLPHF
Sbjct: 746  DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHF 805

Query: 2518 TKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 2339
            TKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED
Sbjct: 806  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 865

Query: 2338 IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFVHVFKYELDDDNWN 2159
            IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEF +VF+YELDD+NW 
Sbjct: 866  IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFDNVFRYELDDENWR 925

Query: 2158 PSYMQPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDVTMPMPVNLKRLIWN 1979
            P+YM P+HV+DLKTIREFRNVF+AEVQKLEADR QLGTEI TTGD T PMPVNLKRLIWN
Sbjct: 926  PTYMLPDHVDDLKTIREFRNVFEAEVQKLEADRLQLGTEITTTGDNTWPMPVNLKRLIWN 985

Query: 1978 AQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDFLSMEAQKNATLLFNILLRSTF 1799
            AQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDD +S+EAQKNATL FNILLRSTF
Sbjct: 986  AQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTF 1045

Query: 1798 ASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1619
            ASKRVLKEYRLT+E+FEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY
Sbjct: 1046 ASKRVLKEYRLTKESFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1105

Query: 1618 AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSV 1439
            AGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LKPEV+KKKELAKNVQCALEYTTLRSV
Sbjct: 1106 AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSV 1165

Query: 1438 THATEIWYDPDPMSTIIEEDVDFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLS 1259
            THATEIWYDPDP+ TIIEEDV+FV+SYYEMPDEDI P+KISPWLLRIELNREMMVDKKLS
Sbjct: 1166 THATEIWYDPDPLGTIIEEDVEFVRSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLS 1225

Query: 1258 MADIAEKINREFDDDLTCIFNDDNADKLILRIRIMNDDAPKGELQDESAEDDVFLKKIES 1079
            MADIAEKIN EFDDDL+CIFNDDNADKLILR+RI ND+APKGE+QDESAEDDVFLKKIE 
Sbjct: 1226 MADIAEKINHEFDDDLSCIFNDDNADKLILRVRITNDEAPKGEIQDESAEDDVFLKKIEG 1285

Query: 1078 NMLTEMALRGIPDINKVFIKSGKINRFDESEGFKSDVEWMLDTEGVNLLAVICHEDVDAT 899
            NMLTEMALRGIPDINKVFIK GK+N+FDESEGFK D EWMLDTEGVNLLAV+CHEDVD+T
Sbjct: 1286 NMLTEMALRGIPDINKVFIKYGKVNKFDESEGFKPDNEWMLDTEGVNLLAVMCHEDVDST 1345

Query: 898  RTTSNHLIEVIEILGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 719
            RTTSNHLIEVIE+LGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT
Sbjct: 1346 RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 1405

Query: 718  RHGINRNDTGPMMRCSFEETVDILLDAAVFAEADHLRGVTENIMLGQLAPIGTGSCALYL 539
            RHGINRNDTGP+MRCSFEETVDILLDAAV+AE+D+LRGVTENIMLGQLAPIGTG C LYL
Sbjct: 1406 RHGINRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCGLYL 1465

Query: 538  NDQMLQQAIELQLPSYMDGGLDFGMTPARSPISGTPYHE-GMMSPSYLLSPNIRASPITD 362
            NDQMLQQAIELQLPSY++ GLD+GMTPARSP+S TPY + GMMSP  +LSPN RASPITD
Sbjct: 1466 NDQMLQQAIELQLPSYVE-GLDYGMTPARSPMSATPYRDGGMMSP--MLSPNFRASPITD 1522

Query: 361  AQFSPYVGGMAF 326
            AQFSPYVGGMAF
Sbjct: 1523 AQFSPYVGGMAF 1534


>dbj|BAK02300.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1859

 Score = 2760 bits (7154), Expect = 0.0
 Identities = 1370/1512 (90%), Positives = 1440/1512 (95%), Gaps = 1/1512 (0%)
 Frame = -1

Query: 4858 EIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTIDRKMKCETCMANMAECPGHFGHLELA 4679
            EIRQMSVV +EH ETMERGK KP GLSDPR+GTIDRK+KC+TCMA MAECPGHFGHLELA
Sbjct: 27   EIRQMSVVVIEHAETMERGKAKPGGLSDPRLGTIDRKIKCDTCMAGMAECPGHFGHLELA 86

Query: 4678 KPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAKFKQALKIRNPKNRLKRIYDACKSKKK 4499
            KPMFHIGF+KTVL+IMRCVCFNCSKILADE++ KFKQALKIRNPK+RL+RIYDACKSKK 
Sbjct: 87   KPMFHIGFIKTVLSIMRCVCFNCSKILADEEETKFKQALKIRNPKHRLRRIYDACKSKKI 146

Query: 4498 CAXXXXXXXXXXXXXDEPIKKTRNGCGAQQPNITIDGMKMVAEYKAPKKKSDEQEQLPEP 4319
            CA             DEP+KK R+GCGAQQPNIT+DGMKMVAE+KA KKKSD+Q+QLPEP
Sbjct: 147  CAGGDELDVQDQQDTDEPVKK-RSGCGAQQPNITVDGMKMVAEFKATKKKSDDQDQLPEP 205

Query: 4318 AERKQILSAERVLSVLKRITDDDCLLLGLNPKFARPDWMILQVLXXXXXXXXPSVMMDTS 4139
             ERKQILSAERVL+VLKRI+D+DCLLLGLNPK+ARPDWMILQVL        PSVMMDTS
Sbjct: 206  VERKQILSAERVLNVLKRISDEDCLLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS 265

Query: 4138 SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNDLPGQPRAT 3959
            SRSEDDLTHQLAMIIRHNENLR+QERNGAPAHII+EFAQLLQFHIATYFDNDLPGQPRAT
Sbjct: 266  SRSEDDLTHQLAMIIRHNENLRKQERNGAPAHIITEFAQLLQFHIATYFDNDLPGQPRAT 325

Query: 3958 QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 3779
            QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP INIDQLGVPWSIALNLT
Sbjct: 326  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDQLGVPWSIALNLT 385

Query: 3778 YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKV 3599
            YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRY+KKSSD HLELGYKV
Sbjct: 386  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKV 445

Query: 3598 ERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 3419
            ERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP
Sbjct: 446  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 505

Query: 3418 QSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW 3239
            QSFETRAEV+ELMMVPKCIVSPQ+NRPVMGIVQDTLLGCRKITKRDT IEKDVFMNILMW
Sbjct: 506  QSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMW 565

Query: 3238 WEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINLIRFSAWHAESEVGSITPGDTLVRI 3059
            WEDFDGK+PAPAIL+PRP+WTGKQVFNLIIPK INLIRFSAWHAE+E G ITPGDT+VRI
Sbjct: 566  WEDFDGKVPAPAILRPRPIWTGKQVFNLIIPKLINLIRFSAWHAETESGFITPGDTMVRI 625

Query: 3058 EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 2879
            EKGELLSGTLCKK LGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN FSIGIG
Sbjct: 626  EKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIG 685

Query: 2878 DTIADAATMEKINETISKAKNDVKELIKLAQEKQLEAEPGRTMMESFENKVNQVLNKARD 2699
            DTIADAATMEKINETI  AKN+VKELIK AQEK LE EPGRTMMESFEN+VNQVLNKARD
Sbjct: 686  DTIADAATMEKINETIGTAKNEVKELIKQAQEKNLEPEPGRTMMESFENRVNQVLNKARD 745

Query: 2698 DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFNERTLPHF 2519
            DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF +RTLPHF
Sbjct: 746  DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHF 805

Query: 2518 TKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 2339
            TKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED
Sbjct: 806  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 865

Query: 2338 IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFVHVFKYELDDDNWN 2159
            IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEF +VF+YELDD+NW 
Sbjct: 866  IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFDNVFRYELDDENWR 925

Query: 2158 PSYMQPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDVTMPMPVNLKRLIWN 1979
            P+YM P+HV+DLKTIREFRNVF+AEVQKLEADR QLGTEI TTGD T PMPVNLKRLIWN
Sbjct: 926  PTYMLPDHVDDLKTIREFRNVFEAEVQKLEADRLQLGTEITTTGDNTWPMPVNLKRLIWN 985

Query: 1978 AQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDFLSMEAQKNATLLFNILLRSTF 1799
            AQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDD +S+EAQKNATL FNILLRSTF
Sbjct: 986  AQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTF 1045

Query: 1798 ASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1619
            ASKRVLKEYRLT+E+FEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY
Sbjct: 1046 ASKRVLKEYRLTKESFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1105

Query: 1618 AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSV 1439
            AGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LKPEV+KKKELAKNVQCALEYTTLRSV
Sbjct: 1106 AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSV 1165

Query: 1438 THATEIWYDPDPMSTIIEEDVDFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLS 1259
            THATEIWYDPDP+ TIIEEDV+FV+SYYEMPDEDI P+KISPWLLRIELNREMMVDKKLS
Sbjct: 1166 THATEIWYDPDPLGTIIEEDVEFVRSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLS 1225

Query: 1258 MADIAEKINREFDDDLTCIFNDDNADKLILRIRIMNDDAPKGELQDESAEDDVFLKKIES 1079
            MADIAEKIN EFDDDL+CIFNDDNADKLILR+RI ND+APKGE+QDESAEDDVFLKKIE 
Sbjct: 1226 MADIAEKINHEFDDDLSCIFNDDNADKLILRVRITNDEAPKGEIQDESAEDDVFLKKIEG 1285

Query: 1078 NMLTEMALRGIPDINKVFIKSGKINRFDESEGFKSDVEWMLDTEGVNLLAVICHEDVDAT 899
            NMLTEMALRGIPDINKVFIK GK+N+FDESEGFK D EWMLDTEGVNLLAV+CHEDVD+T
Sbjct: 1286 NMLTEMALRGIPDINKVFIKYGKVNKFDESEGFKPDNEWMLDTEGVNLLAVMCHEDVDST 1345

Query: 898  RTTSNHLIEVIEILGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 719
            RTTSNHLIEVIE+LGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT
Sbjct: 1346 RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 1405

Query: 718  RHGINRNDTGPMMRCSFEETVDILLDAAVFAEADHLRGVTENIMLGQLAPIGTGSCALYL 539
            RHGINRNDTGP+MRCSFEETVDILLDAAV+AE+D+LRGVTENIMLGQLAPIGTG C LYL
Sbjct: 1406 RHGINRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCGLYL 1465

Query: 538  NDQMLQQAIELQLPSYMDGGLDFGMTPARSPISGTPYHE-GMMSPSYLLSPNIRASPITD 362
            NDQMLQQAIELQLPSY++ GLD+GMTPARSP+S TPY + GMMSP  +LSPN RASPITD
Sbjct: 1466 NDQMLQQAIELQLPSYVE-GLDYGMTPARSPMSATPYRDGGMMSP--MLSPNFRASPITD 1522

Query: 361  AQFSPYVGGMAF 326
            AQFSPYVGGMAF
Sbjct: 1523 AQFSPYVGGMAF 1534


>ref|XP_003573479.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
            [Brachypodium distachyon]
          Length = 1862

 Score = 2750 bits (7128), Expect = 0.0
 Identities = 1363/1512 (90%), Positives = 1436/1512 (94%), Gaps = 1/1512 (0%)
 Frame = -1

Query: 4858 EIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTIDRKMKCETCMANMAECPGHFGHLELA 4679
            EIRQMSVV +E+ ETME+GK KP GLSDPR+GTIDRK+KC+TCMA MAECPGHFGHLELA
Sbjct: 27   EIRQMSVVVIEYAETMEKGKAKPGGLSDPRLGTIDRKVKCDTCMAGMAECPGHFGHLELA 86

Query: 4678 KPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAKFKQALKIRNPKNRLKRIYDACKSKKK 4499
            KPMFHIGF+KTVL+IMRCVCFNCSKILADEDDAKFKQALKIRNPKN+L+RIYDACKSKK 
Sbjct: 87   KPMFHIGFIKTVLSIMRCVCFNCSKILADEDDAKFKQALKIRNPKNKLRRIYDACKSKKI 146

Query: 4498 CAXXXXXXXXXXXXXDEPIKKTRNGCGAQQPNITIDGMKMVAEYKAPKKKSDEQEQLPEP 4319
            CA             DEP+KK R GCGAQQPNIT+DGMKMVAE+K  KKK+D+Q+QLPEP
Sbjct: 147  CAGGDDLEVEDQQDTDEPVKKKRGGCGAQQPNITVDGMKMVAEFKQTKKKNDDQDQLPEP 206

Query: 4318 AERKQILSAERVLSVLKRITDDDCLLLGLNPKFARPDWMILQVLXXXXXXXXPSVMMDTS 4139
             ERKQILSAERVL+VLKRI+D+DCLLLGLNPKFARPDWMILQVL        PSVMMDTS
Sbjct: 207  VERKQILSAERVLNVLKRISDEDCLLLGLNPKFARPDWMILQVLPIPPPPVRPSVMMDTS 266

Query: 4138 SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNDLPGQPRAT 3959
            SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII+EFAQLLQFHIATYFDNDLPGQPRAT
Sbjct: 267  SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIITEFAQLLQFHIATYFDNDLPGQPRAT 326

Query: 3958 QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 3779
            QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP INID+LGVPWSIALNLT
Sbjct: 327  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLT 386

Query: 3778 YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKV 3599
            YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRY+KKSSD HLELGYKV
Sbjct: 387  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKV 446

Query: 3598 ERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 3419
            ERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP
Sbjct: 447  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 506

Query: 3418 QSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW 3239
            QSFETRAEV+ELMMVPKCIVSPQ+NRPVMGIVQDTLLGCRKITKRDT IEKDVFMNILMW
Sbjct: 507  QSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMW 566

Query: 3238 WEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINLIRFSAWHAESEVGSITPGDTLVRI 3059
            WEDFDGK+PAPAILKPRP+WTGKQVFNLIIPK INLIRFSAWHAESE G ITPGDT+VRI
Sbjct: 567  WEDFDGKVPAPAILKPRPIWTGKQVFNLIIPKLINLIRFSAWHAESESGFITPGDTMVRI 626

Query: 3058 EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 2879
            EKGELLSGTLCKK LGT TGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN FSIGIG
Sbjct: 627  EKGELLSGTLCKKTLGTGTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIG 686

Query: 2878 DTIADAATMEKINETISKAKNDVKELIKLAQEKQLEAEPGRTMMESFENKVNQVLNKARD 2699
            DTIADA+TMEKINETISKAK++V ELIK AQ+K LE EPGRTMMESFEN+VNQVLNKARD
Sbjct: 687  DTIADASTMEKINETISKAKSEVTELIKQAQDKLLEPEPGRTMMESFENRVNQVLNKARD 746

Query: 2698 DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFNERTLPHF 2519
            DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF +RTLPHF
Sbjct: 747  DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHF 806

Query: 2518 TKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 2339
            TK+D+GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED
Sbjct: 807  TKNDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 866

Query: 2338 IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFVHVFKYELDDDNWN 2159
            IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+QKLDSLKMKKAEF +V++YELDD+NW 
Sbjct: 867  IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKAEFDNVYRYELDDENWR 926

Query: 2158 PSYMQPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDVTMPMPVNLKRLIWN 1979
            P+YM PEHV+DLKTIREFRNVF+AEVQKLEADR QLGTEI TTGD + PMPVNLKRLIWN
Sbjct: 927  PTYMLPEHVDDLKTIREFRNVFEAEVQKLEADRLQLGTEITTTGDNSWPMPVNLKRLIWN 986

Query: 1978 AQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDFLSMEAQKNATLLFNILLRSTF 1799
            AQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDD +S+EAQKNATL FNILLRSTF
Sbjct: 987  AQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTF 1046

Query: 1798 ASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1619
            ASKRVLKEYRLT+E+FEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY
Sbjct: 1047 ASKRVLKEYRLTKESFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1106

Query: 1618 AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSV 1439
            AGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LKPEV+KKKELAKNVQCALEYTTLRSV
Sbjct: 1107 AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSV 1166

Query: 1438 THATEIWYDPDPMSTIIEEDVDFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLS 1259
            THATEIWYDPDP+ TIIEED+DFVKSYYEMPDEDI P+KISPWLLRIELNREMMVDKKLS
Sbjct: 1167 THATEIWYDPDPLGTIIEEDMDFVKSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLS 1226

Query: 1258 MADIAEKINREFDDDLTCIFNDDNADKLILRIRIMNDDAPKGELQDESAEDDVFLKKIES 1079
            MADIAEKIN EFDDDL+CIFNDDNADKLILR+RI ND+APKGE+QDESAEDDVFLKKIE 
Sbjct: 1227 MADIAEKINHEFDDDLSCIFNDDNADKLILRVRITNDEAPKGEIQDESAEDDVFLKKIEG 1286

Query: 1078 NMLTEMALRGIPDINKVFIKSGKINRFDESEGFKSDVEWMLDTEGVNLLAVICHEDVDAT 899
            NMLTEMALRGIPDINKVFIK GKIN+FDE++GFK D EWMLDTEGVNLLAV+CHEDVDAT
Sbjct: 1287 NMLTEMALRGIPDINKVFIKYGKINKFDENDGFKPDNEWMLDTEGVNLLAVMCHEDVDAT 1346

Query: 898  RTTSNHLIEVIEILGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 719
            RTTSNHLIEVIE+LGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT
Sbjct: 1347 RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 1406

Query: 718  RHGINRNDTGPMMRCSFEETVDILLDAAVFAEADHLRGVTENIMLGQLAPIGTGSCALYL 539
            RHGINRNDTGP+MRCSFEETVDILLDAAV+AE+D+LRGVTENIMLGQLAPIGTG C LYL
Sbjct: 1407 RHGINRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCGLYL 1466

Query: 538  NDQMLQQAIELQLPSYMDGGLDFGMTPARSPISGTPYHE-GMMSPSYLLSPNIRASPITD 362
            NDQMLQQAIELQLPSY++G    GMTPAR+  SGTPYH+ GMMSP  +LSPN R+SPI+D
Sbjct: 1467 NDQMLQQAIELQLPSYVEGLEYIGMTPARASPSGTPYHDGGMMSP--MLSPNFRSSPISD 1524

Query: 361  AQFSPYVGGMAF 326
            AQFSPYVGGMAF
Sbjct: 1525 AQFSPYVGGMAF 1536


>ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
            sativus]
          Length = 1853

 Score = 2740 bits (7103), Expect = 0.0
 Identities = 1360/1511 (90%), Positives = 1425/1511 (94%)
 Frame = -1

Query: 4858 EIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTIDRKMKCETCMANMAECPGHFGHLELA 4679
            EIRQMSVVQ+EHGET ERGKPK AGLSDPR+GTIDRKMKCETC ANMAECPGHFGHLELA
Sbjct: 27   EIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELA 86

Query: 4678 KPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAKFKQALKIRNPKNRLKRIYDACKSKKK 4499
            KPMFHIGF+KTVL IMR VCFNCSKIL DE+D KFKQAL+I+NPKNRL++I DACK+K K
Sbjct: 87   KPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQALRIKNPKNRLRKILDACKNKTK 146

Query: 4498 CAXXXXXXXXXXXXXDEPIKKTRNGCGAQQPNITIDGMKMVAEYKAPKKKSDEQEQLPEP 4319
            C               +P+KK+R GCGAQQP I+I+GMKM AEYKA +KK+D+ EQLPEP
Sbjct: 147  CEGGDEIDVQGQDSD-QPVKKSRGGCGAQQPKISIEGMKMTAEYKAQRKKNDDPEQLPEP 205

Query: 4318 AERKQILSAERVLSVLKRITDDDCLLLGLNPKFARPDWMILQVLXXXXXXXXPSVMMDTS 4139
             ERKQ L+AERVL +LKRITD+DC LLGLNPK+ARPDWMILQVL        PSVMMDTS
Sbjct: 206  VERKQTLTAERVLGILKRITDEDCKLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS 265

Query: 4138 SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNDLPGQPRAT 3959
            SRSEDDLTHQLAMIIRHNENLRRQERNG+PAHIISEFAQLLQFHIATYFDN+LPG PRAT
Sbjct: 266  SRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRAT 325

Query: 3958 QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 3779
            QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID+LGVPWSIALNLT
Sbjct: 326  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLT 385

Query: 3778 YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKV 3599
            YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR+DGQRLDLRYLKKSSDHHLELGYKV
Sbjct: 386  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKV 445

Query: 3598 ERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 3419
            ERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP
Sbjct: 446  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 505

Query: 3418 QSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW 3239
            QSFETRAEV+ELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI KDVFMN LMW
Sbjct: 506  QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNTLMW 565

Query: 3238 WEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINLIRFSAWHAESEVGSITPGDTLVRI 3059
            WEDFDGKIPAPAILKP+PLWTGKQVFNLIIPKQINL R SAWH+ESE G ITPGDT VRI
Sbjct: 566  WEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQINLTRTSAWHSESETGHITPGDTFVRI 625

Query: 3058 EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 2879
            EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG
Sbjct: 626  EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 685

Query: 2878 DTIADAATMEKINETISKAKNDVKELIKLAQEKQLEAEPGRTMMESFENKVNQVLNKARD 2699
            DTIADAATMEKINETIS AKN+VK LIK AQE+ LE EPGRTMM+SFENKVNQVLNKARD
Sbjct: 686  DTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARD 745

Query: 2698 DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFNERTLPHF 2519
            DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF +RTLPHF
Sbjct: 746  DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHF 805

Query: 2518 TKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 2339
            TKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED
Sbjct: 806  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 865

Query: 2338 IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFVHVFKYELDDDNWN 2159
            IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKK EF  +F+YE +D+NW 
Sbjct: 866  IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWK 925

Query: 2158 PSYMQPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDVTMPMPVNLKRLIWN 1979
            P+YM PEHVEDLKTIREFRNVF+AEVQKLEADRYQLGTEIATTG+ + PMPVNLKRLI N
Sbjct: 926  PNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQN 985

Query: 1978 AQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDFLSMEAQKNATLLFNILLRSTF 1799
            AQKTFKID RR SDMHPMEIVEAIDKLQERLKVVPG+D LS+EAQKNATL FNILLRSTF
Sbjct: 986  AQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTF 1045

Query: 1798 ASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1619
            ASKRVL EYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY
Sbjct: 1046 ASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1105

Query: 1618 AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSV 1439
            AGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLKPE NK KE AK VQCALEYTTLRSV
Sbjct: 1106 AGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSV 1165

Query: 1438 THATEIWYDPDPMSTIIEEDVDFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLS 1259
            T ATE+WYDPDPMSTIIEED+DFVKSYYEMPDE+IAPEKISPWLLRIELNREMMVDKKLS
Sbjct: 1166 TQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLS 1225

Query: 1258 MADIAEKINREFDDDLTCIFNDDNADKLILRIRIMNDDAPKGELQDESAEDDVFLKKIES 1079
            MA+IAEKIN EFDDDLTCIFNDDNA+KLILRIRIMND+APKGEL DESAEDDVFLKKIES
Sbjct: 1226 MANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLKKIES 1285

Query: 1078 NMLTEMALRGIPDINKVFIKSGKINRFDESEGFKSDVEWMLDTEGVNLLAVICHEDVDAT 899
            NMLTEMALRGIPDINKVFIK GK+N+FDE+EGFK ++EWMLDTEGVNLLAV+ HEDVDA 
Sbjct: 1286 NMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVMTHEDVDAR 1345

Query: 898  RTTSNHLIEVIEILGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 719
            RTTSNHLIEVIE+LGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT
Sbjct: 1346 RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 1405

Query: 718  RHGINRNDTGPMMRCSFEETVDILLDAAVFAEADHLRGVTENIMLGQLAPIGTGSCALYL 539
            RHGINRNDTGPMMRCSFEETVDILLDAAV+AE DHLRGVTENIMLGQLAPIGTG CALYL
Sbjct: 1406 RHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYL 1465

Query: 538  NDQMLQQAIELQLPSYMDGGLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPITDA 359
            ND+ML+ AIELQLPSY+D GLDFGMTP+RSPISGTPYHEGMMSP+YLLSPN+R SPI+DA
Sbjct: 1466 NDEMLKNAIELQLPSYID-GLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPISDA 1524

Query: 358  QFSPYVGGMAF 326
            QFSPYVGGMAF
Sbjct: 1525 QFSPYVGGMAF 1535


>ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB1-like [Cucumis sativus]
          Length = 1832

 Score = 2740 bits (7103), Expect = 0.0
 Identities = 1360/1511 (90%), Positives = 1425/1511 (94%)
 Frame = -1

Query: 4858 EIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTIDRKMKCETCMANMAECPGHFGHLELA 4679
            EIRQMSVVQ+EHGET ERGKPK AGLSDPR+GTIDRKMKCETC ANMAECPGHFGHLELA
Sbjct: 27   EIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELA 86

Query: 4678 KPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAKFKQALKIRNPKNRLKRIYDACKSKKK 4499
            KPMFHIGF+KTVL IMR VCFNCSKIL DE+D KFKQAL+I+NPKNRL++I DACK+K K
Sbjct: 87   KPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQALRIKNPKNRLRKILDACKNKTK 146

Query: 4498 CAXXXXXXXXXXXXXDEPIKKTRNGCGAQQPNITIDGMKMVAEYKAPKKKSDEQEQLPEP 4319
            C               +P+KK+R GCGAQQP I+I+GMKM AEYKA +KK+D+ EQLPEP
Sbjct: 147  CEGGDEIDVQGQDSD-QPVKKSRGGCGAQQPKISIEGMKMTAEYKAQRKKNDDPEQLPEP 205

Query: 4318 AERKQILSAERVLSVLKRITDDDCLLLGLNPKFARPDWMILQVLXXXXXXXXPSVMMDTS 4139
             ERKQ L+AERVL +LKRITD+DC LLGLNPK+ARPDWMILQVL        PSVMMDTS
Sbjct: 206  VERKQTLTAERVLGILKRITDEDCKLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS 265

Query: 4138 SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNDLPGQPRAT 3959
            SRSEDDLTHQLAMIIRHNENLRRQERNG+PAHIISEFAQLLQFHIATYFDN+LPG PRAT
Sbjct: 266  SRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRAT 325

Query: 3958 QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 3779
            QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID+LGVPWSIALNLT
Sbjct: 326  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLT 385

Query: 3778 YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKV 3599
            YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR+DGQRLDLRYLKKSSDHHLELGYKV
Sbjct: 386  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKV 445

Query: 3598 ERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 3419
            ERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP
Sbjct: 446  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 505

Query: 3418 QSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW 3239
            QSFETRAEV+ELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI KDVFMN LMW
Sbjct: 506  QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNTLMW 565

Query: 3238 WEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINLIRFSAWHAESEVGSITPGDTLVRI 3059
            WEDFDGKIPAPAILKP+PLWTGKQVFNLIIPKQINL R SAWH+ESE G ITPGDT VRI
Sbjct: 566  WEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQINLTRTSAWHSESETGHITPGDTFVRI 625

Query: 3058 EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 2879
            EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG
Sbjct: 626  EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 685

Query: 2878 DTIADAATMEKINETISKAKNDVKELIKLAQEKQLEAEPGRTMMESFENKVNQVLNKARD 2699
            DTIADAATMEKINETIS AKN+VK LIK AQE+ LE EPGRTMM+SFENKVNQVLNKARD
Sbjct: 686  DTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARD 745

Query: 2698 DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFNERTLPHF 2519
            DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF +RTLPHF
Sbjct: 746  DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHF 805

Query: 2518 TKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 2339
            TKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED
Sbjct: 806  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 865

Query: 2338 IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFVHVFKYELDDDNWN 2159
            IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKK EF  +F+YE +D+NW 
Sbjct: 866  IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWK 925

Query: 2158 PSYMQPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDVTMPMPVNLKRLIWN 1979
            P+YM PEHVEDLKTIREFRNVF+AEVQKLEADRYQLGTEIATTG+ + PMPVNLKRLI N
Sbjct: 926  PNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQN 985

Query: 1978 AQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDFLSMEAQKNATLLFNILLRSTF 1799
            AQKTFKID RR SDMHPMEIVEAIDKLQERLKVVPG+D LS+EAQKNATL FNILLRSTF
Sbjct: 986  AQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTF 1045

Query: 1798 ASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1619
            ASKRVL EYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY
Sbjct: 1046 ASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1105

Query: 1618 AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSV 1439
            AGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLKPE NK KE AK VQCALEYTTLRSV
Sbjct: 1106 AGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSV 1165

Query: 1438 THATEIWYDPDPMSTIIEEDVDFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLS 1259
            T ATE+WYDPDPMSTIIEED+DFVKSYYEMPDE+IAPEKISPWLLRIELNREMMVDKKLS
Sbjct: 1166 TQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLS 1225

Query: 1258 MADIAEKINREFDDDLTCIFNDDNADKLILRIRIMNDDAPKGELQDESAEDDVFLKKIES 1079
            MA+IAEKIN EFDDDLTCIFNDDNA+KLILRIRIMND+APKGEL DESAEDDVFLKKIES
Sbjct: 1226 MANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLKKIES 1285

Query: 1078 NMLTEMALRGIPDINKVFIKSGKINRFDESEGFKSDVEWMLDTEGVNLLAVICHEDVDAT 899
            NMLTEMALRGIPDINKVFIK GK+N+FDE+EGFK ++EWMLDTEGVNLLAV+ HEDVDA 
Sbjct: 1286 NMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVMTHEDVDAR 1345

Query: 898  RTTSNHLIEVIEILGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 719
            RTTSNHLIEVIE+LGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT
Sbjct: 1346 RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 1405

Query: 718  RHGINRNDTGPMMRCSFEETVDILLDAAVFAEADHLRGVTENIMLGQLAPIGTGSCALYL 539
            RHGINRNDTGPMMRCSFEETVDILLDAAV+AE DHLRGVTENIMLGQLAPIGTG CALYL
Sbjct: 1406 RHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYL 1465

Query: 538  NDQMLQQAIELQLPSYMDGGLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPITDA 359
            ND+ML+ AIELQLPSY+D GLDFGMTP+RSPISGTPYHEGMMSP+YLLSPN+R SPI+DA
Sbjct: 1466 NDEMLKNAIELQLPSYID-GLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPISDA 1524

Query: 358  QFSPYVGGMAF 326
            QFSPYVGGMAF
Sbjct: 1525 QFSPYVGGMAF 1535


>gb|EMJ04257.1| hypothetical protein PRUPE_ppa000093mg [Prunus persica]
          Length = 1844

 Score = 2735 bits (7089), Expect = 0.0
 Identities = 1358/1511 (89%), Positives = 1425/1511 (94%)
 Frame = -1

Query: 4858 EIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTIDRKMKCETCMANMAECPGHFGHLELA 4679
            EIRQMSVVQ+EH ETM  GKPK AGLSDPR+GTIDRKMKCETC ANMAECPGHFGHLELA
Sbjct: 27   EIRQMSVVQIEHSETMLGGKPKTAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELA 86

Query: 4678 KPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAKFKQALKIRNPKNRLKRIYDACKSKKK 4499
            KPMFHIGF+KTVL+IMRCVCFNCSKIL DEDD KFKQAL+I++PKNRLK+I DACK+K K
Sbjct: 87   KPMFHIGFMKTVLSIMRCVCFNCSKILVDEDDHKFKQALRIKSPKNRLKKILDACKNKTK 146

Query: 4498 CAXXXXXXXXXXXXXDEPIKKTRNGCGAQQPNITIDGMKMVAEYKAPKKKSDEQEQLPEP 4319
            C              +EP+KK+R GCGAQQP ++I+GMKM AEYKA +KKSD+QEQLPEP
Sbjct: 147  C-DGGDEIDVQGQESEEPVKKSRGGCGAQQPKLSIEGMKMNAEYKAQRKKSDDQEQLPEP 205

Query: 4318 AERKQILSAERVLSVLKRITDDDCLLLGLNPKFARPDWMILQVLXXXXXXXXPSVMMDTS 4139
             ERKQ L+AERVLSVLKRI+D+D  LLGLNPK+ARPDWMILQVL        PSVMMDTS
Sbjct: 206  VERKQTLTAERVLSVLKRISDEDSQLLGLNPKYARPDWMILQVLPIPPQPVRPSVMMDTS 265

Query: 4138 SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNDLPGQPRAT 3959
            SRSEDDLTHQLAMIIRHNENLRRQERNG+PAHIISEFAQLLQFHIATYFDN+LPG PRAT
Sbjct: 266  SRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRAT 325

Query: 3958 QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 3779
            QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP INIDQLGVPWSIALNLT
Sbjct: 326  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDQLGVPWSIALNLT 385

Query: 3778 YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKV 3599
            YPETVTPYNIERLKELVE GPHPPPGKTGAKYIIR+DGQRLDLRYLKKSSDHHLELGYKV
Sbjct: 386  YPETVTPYNIERLKELVENGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKV 445

Query: 3598 ERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 3419
            ERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP
Sbjct: 446  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 505

Query: 3418 QSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW 3239
            QSFETRAEV+ELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW
Sbjct: 506  QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW 565

Query: 3238 WEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINLIRFSAWHAESEVGSITPGDTLVRI 3059
            WEDFDGK+PAPAILKPRPLWTGKQVFNLIIPKQINL R SAWH+E+E G+ITPGDT VRI
Sbjct: 566  WEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQINLQRTSAWHSEAESGNITPGDTFVRI 625

Query: 3058 EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 2879
            EKGELL+GTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG
Sbjct: 626  EKGELLAGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 685

Query: 2878 DTIADAATMEKINETISKAKNDVKELIKLAQEKQLEAEPGRTMMESFENKVNQVLNKARD 2699
            DTIADAATMEKINETISKAKN+VK+LI  AQ KQLEAEPGRTMM+SFENKVNQVLN+ARD
Sbjct: 686  DTIADAATMEKINETISKAKNEVKDLISKAQSKQLEAEPGRTMMDSFENKVNQVLNRARD 745

Query: 2698 DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFNERTLPHF 2519
            DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF +RTLPHF
Sbjct: 746  DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHF 805

Query: 2518 TKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 2339
            TKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED
Sbjct: 806  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 865

Query: 2338 IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFVHVFKYELDDDNWN 2159
            IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKK+EF   F YELDD+NWN
Sbjct: 866  IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDKTFSYELDDENWN 925

Query: 2158 PSYMQPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDVTMPMPVNLKRLIWN 1979
            P YM  EHVEDLKTIREFRNVFDAEVQKLE DR QLGTEIA TGD + P+PVNLKRLIWN
Sbjct: 926  PDYMLHEHVEDLKTIREFRNVFDAEVQKLETDRLQLGTEIAVTGDNSWPLPVNLKRLIWN 985

Query: 1978 AQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDFLSMEAQKNATLLFNILLRSTF 1799
            AQKTFKID RR SDMHPMEIVEAIDKLQERLKVVPGDD LS+EAQKNATL F+ILLRSTF
Sbjct: 986  AQKTFKIDFRRTSDMHPMEIVEAIDKLQERLKVVPGDDLLSVEAQKNATLFFSILLRSTF 1045

Query: 1798 ASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1619
            ASKRVL EYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY
Sbjct: 1046 ASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1105

Query: 1618 AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSV 1439
            AGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLKPE NK KE AKNVQCALEYTTLRSV
Sbjct: 1106 AGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKNVQCALEYTTLRSV 1165

Query: 1438 THATEIWYDPDPMSTIIEEDVDFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLS 1259
            T ATE+WYDPDPMSTIIEEDVDFV SYYEMPDE++ P+KISPWLLRIELNREMMVDKKLS
Sbjct: 1166 TQATEVWYDPDPMSTIIEEDVDFVNSYYEMPDEEVNPDKISPWLLRIELNREMMVDKKLS 1225

Query: 1258 MADIAEKINREFDDDLTCIFNDDNADKLILRIRIMNDDAPKGELQDESAEDDVFLKKIES 1079
            MADIAEKIN EFDDDLTCIFNDDNA+KLILRIRIMN +APKGEL DESAEDDVFLKKIES
Sbjct: 1226 MADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNAEAPKGELVDESAEDDVFLKKIES 1285

Query: 1078 NMLTEMALRGIPDINKVFIKSGKINRFDESEGFKSDVEWMLDTEGVNLLAVICHEDVDAT 899
            NMLTEMALRGIPDINKVFIK GK+N+FD +EGFK++ EWMLDTEGVNLLAV+CH+DVDA 
Sbjct: 1286 NMLTEMALRGIPDINKVFIKHGKVNKFDPNEGFKAEQEWMLDTEGVNLLAVLCHDDVDAR 1345

Query: 898  RTTSNHLIEVIEILGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 719
            RTTSNHLIE++EILGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT
Sbjct: 1346 RTTSNHLIEILEILGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 1405

Query: 718  RHGINRNDTGPMMRCSFEETVDILLDAAVFAEADHLRGVTENIMLGQLAPIGTGSCALYL 539
            RHGINRNDTGPMMRCSFEETVDILLDAAVFAE D+LRGVTENIMLGQLAPIGTG CALYL
Sbjct: 1406 RHGINRNDTGPMMRCSFEETVDILLDAAVFAETDYLRGVTENIMLGQLAPIGTGDCALYL 1465

Query: 538  NDQMLQQAIELQLPSYMDGGLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPITDA 359
            ND+ML+ AIELQLPSYMD GLDFGMTP+RSP+SGTPYHEGMMSP+YLLSPN+R SPI+DA
Sbjct: 1466 NDEMLKNAIELQLPSYMD-GLDFGMTPSRSPVSGTPYHEGMMSPNYLLSPNLRLSPISDA 1524

Query: 358  QFSPYVGGMAF 326
            QFSPYVGGMAF
Sbjct: 1525 QFSPYVGGMAF 1535


>ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Fragaria
            vesca subsp. vesca]
          Length = 1842

 Score = 2734 bits (7088), Expect = 0.0
 Identities = 1353/1511 (89%), Positives = 1422/1511 (94%)
 Frame = -1

Query: 4858 EIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTIDRKMKCETCMANMAECPGHFGHLELA 4679
            EIRQMSVVQ+EH ETM  GKPK AGLSDPR+GTIDRKMKCETC ANMAECPGHFGHLELA
Sbjct: 27   EIRQMSVVQIEHSETMLGGKPKTAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELA 86

Query: 4678 KPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAKFKQALKIRNPKNRLKRIYDACKSKKK 4499
            KPMFHIGF+KTVL+IMRCVCFNCSKIL DEDD KFK AL+I+NPKNRLK+I DACK+K K
Sbjct: 87   KPMFHIGFMKTVLSIMRCVCFNCSKILVDEDDHKFKTALRIKNPKNRLKKILDACKNKTK 146

Query: 4498 CAXXXXXXXXXXXXXDEPIKKTRNGCGAQQPNITIDGMKMVAEYKAPKKKSDEQEQLPEP 4319
            C               EP+KK+R GCGAQQP +TIDGMKMVAEYKA +KKSD+QEQLPEP
Sbjct: 147  CEGGDEIDVQDTD---EPLKKSRGGCGAQQPKLTIDGMKMVAEYKAQRKKSDDQEQLPEP 203

Query: 4318 AERKQILSAERVLSVLKRITDDDCLLLGLNPKFARPDWMILQVLXXXXXXXXPSVMMDTS 4139
             ERKQ L+AERVLSVLKRI+D+DC LLGLNPK+ARPDWMILQVL        PSVMMDTS
Sbjct: 204  VERKQTLTAERVLSVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPQPVRPSVMMDTS 263

Query: 4138 SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNDLPGQPRAT 3959
            SRSEDDLTHQLAMIIRHNENLRRQERNG+PAHIISEFAQLLQFHIATYFDN+LPG PRAT
Sbjct: 264  SRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRAT 323

Query: 3958 QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 3779
            QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP INIDQLGVPWSIALNLT
Sbjct: 324  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDQLGVPWSIALNLT 383

Query: 3778 YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKV 3599
            YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR+DGQRLDLRYLKKSSDHHLELGYKV
Sbjct: 384  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKV 443

Query: 3598 ERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 3419
            ERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP
Sbjct: 444  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 503

Query: 3418 QSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW 3239
            QSFETRAEV+ELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW
Sbjct: 504  QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW 563

Query: 3238 WEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINLIRFSAWHAESEVGSITPGDTLVRI 3059
            WEDFDGK+PAPAILKPRPLWTGKQVFNLIIPKQINL R SAWH+ESE G+ITPGDT VRI
Sbjct: 564  WEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQINLQRTSAWHSESETGNITPGDTHVRI 623

Query: 3058 EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 2879
            EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG
Sbjct: 624  EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 683

Query: 2878 DTIADAATMEKINETISKAKNDVKELIKLAQEKQLEAEPGRTMMESFENKVNQVLNKARD 2699
            DTIADAATMEKINETISKAKN+VKELI  AQ K LE EPGRTMM+SFENKVNQVLN+ARD
Sbjct: 684  DTIADAATMEKINETISKAKNEVKELISKAQSKSLEPEPGRTMMDSFENKVNQVLNRARD 743

Query: 2698 DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFNERTLPHF 2519
            DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF +RTLPHF
Sbjct: 744  DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHF 803

Query: 2518 TKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 2339
            TKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED
Sbjct: 804  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 863

Query: 2338 IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFVHVFKYELDDDNWN 2159
            IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKK EF   F Y  DD+NWN
Sbjct: 864  IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFDKTFAYVFDDENWN 923

Query: 2158 PSYMQPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDVTMPMPVNLKRLIWN 1979
            P YM PEHVEDLKTIREFRNVFDAEV KLE DR QLGTEIA TGD + P+PVNLKRLIWN
Sbjct: 924  PDYMLPEHVEDLKTIREFRNVFDAEVSKLETDRLQLGTEIAVTGDNSWPLPVNLKRLIWN 983

Query: 1978 AQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDFLSMEAQKNATLLFNILLRSTF 1799
            AQKTFKID RR SDMHPMEIVEAIDKLQERL+VVPGDD LS+EAQKNATL FNILLRSTF
Sbjct: 984  AQKTFKIDFRRTSDMHPMEIVEAIDKLQERLRVVPGDDLLSVEAQKNATLFFNILLRSTF 1043

Query: 1798 ASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1619
            ASKRVL+EYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY
Sbjct: 1044 ASKRVLEEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1103

Query: 1618 AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSV 1439
            AGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLKPE NK KE AKNVQCALEYTTLRSV
Sbjct: 1104 AGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKNVQCALEYTTLRSV 1163

Query: 1438 THATEIWYDPDPMSTIIEEDVDFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLS 1259
            T ATE+WYDPDPMST+IEED+DFV+SYYEMPDE++ P+KISPWLLRIELNREMMVDKKLS
Sbjct: 1164 TQATEVWYDPDPMSTLIEEDLDFVRSYYEMPDEEVNPDKISPWLLRIELNREMMVDKKLS 1223

Query: 1258 MADIAEKINREFDDDLTCIFNDDNADKLILRIRIMNDDAPKGELQDESAEDDVFLKKIES 1079
            MADIAEKIN EFD DLTCIFNDDNA+KLILRIRIMN++ PKG+ QDESAEDDVFLKKIES
Sbjct: 1224 MADIAEKINLEFDGDLTCIFNDDNAEKLILRIRIMNEETPKGDSQDESAEDDVFLKKIES 1283

Query: 1078 NMLTEMALRGIPDINKVFIKSGKINRFDESEGFKSDVEWMLDTEGVNLLAVICHEDVDAT 899
            NMLTEMALRGIPDINKVFIK GK+N+FD++EGFK++ EWMLDTEGVNLLAV+CH+DVDA 
Sbjct: 1284 NMLTEMALRGIPDINKVFIKHGKVNKFDQNEGFKAEQEWMLDTEGVNLLAVLCHDDVDAK 1343

Query: 898  RTTSNHLIEVIEILGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 719
            RTTSNHLIE+IE+LGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT
Sbjct: 1344 RTTSNHLIEIIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 1403

Query: 718  RHGINRNDTGPMMRCSFEETVDILLDAAVFAEADHLRGVTENIMLGQLAPIGTGSCALYL 539
            RHGINRNDTGPMMRCSFEETVDILLDA+VFAE DHLRGVTENIMLGQLAPIGTG CALYL
Sbjct: 1404 RHGINRNDTGPMMRCSFEETVDILLDASVFAETDHLRGVTENIMLGQLAPIGTGDCALYL 1463

Query: 538  NDQMLQQAIELQLPSYMDGGLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPITDA 359
            ND+ML+ AIELQLPSY+D GLDFGMTP+RSP+SGTP+ +GMMSP+YLLSPN+R SPI+DA
Sbjct: 1464 NDEMLKNAIELQLPSYVD-GLDFGMTPSRSPVSGTPFRDGMMSPNYLLSPNMRMSPISDA 1522

Query: 358  QFSPYVGGMAF 326
            QFSPYVGGMAF
Sbjct: 1523 QFSPYVGGMAF 1533


>ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Glycine
            max]
          Length = 1827

 Score = 2729 bits (7073), Expect = 0.0
 Identities = 1348/1511 (89%), Positives = 1427/1511 (94%)
 Frame = -1

Query: 4858 EIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTIDRKMKCETCMANMAECPGHFGHLELA 4679
            EIRQMSVVQ+EHGET ERGKPK  GLSDPR+GTIDRK+KCETC A+MAECPGHFGHLELA
Sbjct: 27   EIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTIDRKLKCETCTASMAECPGHFGHLELA 86

Query: 4678 KPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAKFKQALKIRNPKNRLKRIYDACKSKKK 4499
            KPMFHIGFLKTVL IMRCVCFNCSKILADE+D KFKQAL+IRNPKNRLK+I DACK+K K
Sbjct: 87   KPMFHIGFLKTVLTIMRCVCFNCSKILADENDHKFKQALRIRNPKNRLKKILDACKNKSK 146

Query: 4498 CAXXXXXXXXXXXXXDEPIKKTRNGCGAQQPNITIDGMKMVAEYKAPKKKSDEQEQLPEP 4319
            C               EP+KK+R GCGAQQP ITI+GMKM+AEYKA +KKSD+QEQLPEP
Sbjct: 147  CEGGDEIDIPGQDTD-EPVKKSRGGCGAQQPKITIEGMKMIAEYKAQRKKSDDQEQLPEP 205

Query: 4318 AERKQILSAERVLSVLKRITDDDCLLLGLNPKFARPDWMILQVLXXXXXXXXPSVMMDTS 4139
             ERKQ LSAERVL VLKRI+D+DC LLGLNPK+ARPDWMILQVL        PSVMMDTS
Sbjct: 206  VERKQTLSAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS 265

Query: 4138 SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNDLPGQPRAT 3959
            SRSEDDLTHQLAMIIRHNENL+RQERNG+PAHIISEFAQLLQFHIATYFDN+LPG PRAT
Sbjct: 266  SRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRAT 325

Query: 3958 QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 3779
            QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT
Sbjct: 326  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 385

Query: 3778 YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKV 3599
            YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR+DGQRLDLRYLKKSSDHHLELGYKV
Sbjct: 386  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKV 445

Query: 3598 ERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 3419
            ERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP
Sbjct: 446  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 505

Query: 3418 QSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW 3239
            QSFETRAEV+ELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI KDVFMNILMW
Sbjct: 506  QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNILMW 565

Query: 3238 WEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINLIRFSAWHAESEVGSITPGDTLVRI 3059
            WEDFDGK+PAPAILKP PLWTGKQVFNLIIPKQINLIR+S+WH+ESE GSITPGDT+VRI
Sbjct: 566  WEDFDGKVPAPAILKPEPLWTGKQVFNLIIPKQINLIRYSSWHSESERGSITPGDTMVRI 625

Query: 3058 EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 2879
            EKGELL+GTLCKK LGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG
Sbjct: 626  EKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 685

Query: 2878 DTIADAATMEKINETISKAKNDVKELIKLAQEKQLEAEPGRTMMESFENKVNQVLNKARD 2699
            DTIADA+TME IN+TIS AK  VK+LI+ AQEK+LEAEPGRTMM+SFEN+VNQ LN+ARD
Sbjct: 686  DTIADASTMETINQTISAAKEKVKQLIREAQEKKLEAEPGRTMMDSFENRVNQTLNRARD 745

Query: 2698 DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFNERTLPHF 2519
            DAG+SAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF +RTLPHF
Sbjct: 746  DAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHF 805

Query: 2518 TKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 2339
            TKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED
Sbjct: 806  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 865

Query: 2338 IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFVHVFKYELDDDNWN 2159
            IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+QKLDSLKMKK EF  VF+YE DD+NW 
Sbjct: 866  IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKTEFDRVFRYEFDDENWK 925

Query: 2158 PSYMQPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDVTMPMPVNLKRLIWN 1979
            P+YM  E VEDLKTIREFRNVF+AEVQKLEADRYQL TEIATTGD ++P+PVNLKRLIWN
Sbjct: 926  PTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRYQLATEIATTGDSSLPLPVNLKRLIWN 985

Query: 1978 AQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDFLSMEAQKNATLLFNILLRSTF 1799
            AQKTFK+D RRPSDMHPMEIVEAIDKLQERLKVVPG+D LS EAQKNATLLFNILLRSTF
Sbjct: 986  AQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVPGEDLLSQEAQKNATLLFNILLRSTF 1045

Query: 1798 ASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1619
            ASKRVL+EYRL+REAFEWV+GEIESRFLQSLVA GEMIGCVAAQSIGEPATQMTLNTFHY
Sbjct: 1046 ASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASGEMIGCVAAQSIGEPATQMTLNTFHY 1105

Query: 1618 AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSV 1439
            AGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYL+ +V K KE AK+VQCALEYTTLRSV
Sbjct: 1106 AGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLRSDVGKTKERAKSVQCALEYTTLRSV 1165

Query: 1438 THATEIWYDPDPMSTIIEEDVDFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLS 1259
            T ATE+WYDPDPMSTIIEED DFVKSYYEMPDE++A EKISPWLLRIELNREMMVDKKLS
Sbjct: 1166 TQATEVWYDPDPMSTIIEEDADFVKSYYEMPDEEVALEKISPWLLRIELNREMMVDKKLS 1225

Query: 1258 MADIAEKINREFDDDLTCIFNDDNADKLILRIRIMNDDAPKGELQDESAEDDVFLKKIES 1079
            MADIAEKIN EFDDDLTCIFNDDNA+KLILRIRIMND+APKGE+QDESAEDDVFLKKIES
Sbjct: 1226 MADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGEIQDESAEDDVFLKKIES 1285

Query: 1078 NMLTEMALRGIPDINKVFIKSGKINRFDESEGFKSDVEWMLDTEGVNLLAVICHEDVDAT 899
            NMLTEM LRGIPDINKVFIK+ K+ +FDE++GFK + EWMLDTEGVNLLAV+CHEDVDAT
Sbjct: 1286 NMLTEMTLRGIPDINKVFIKNTKVQKFDENQGFKPNEEWMLDTEGVNLLAVMCHEDVDAT 1345

Query: 898  RTTSNHLIEVIEILGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 719
            RTTSNHLIEVIE+LGIEAVRR+LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT
Sbjct: 1346 RTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 1405

Query: 718  RHGINRNDTGPMMRCSFEETVDILLDAAVFAEADHLRGVTENIMLGQLAPIGTGSCALYL 539
            RHGINRNDTGPMMRCSFEETVDILLDAAV+AE D+LRGVTENIMLGQLAPIGTG CALYL
Sbjct: 1406 RHGINRNDTGPMMRCSFEETVDILLDAAVYAETDYLRGVTENIMLGQLAPIGTGECALYL 1465

Query: 538  NDQMLQQAIELQLPSYMDGGLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPITDA 359
            ND+ML+ AIELQLPSYMD GLDFGMTPARSPISGTPYHEG+MSPSYLLSPN+R SP +DA
Sbjct: 1466 NDEMLKNAIELQLPSYMD-GLDFGMTPARSPISGTPYHEGLMSPSYLLSPNLRLSPTSDA 1524

Query: 358  QFSPYVGGMAF 326
            QFSPYVGGMAF
Sbjct: 1525 QFSPYVGGMAF 1535


>gb|ESW29856.1| hypothetical protein PHAVU_002G104500g [Phaseolus vulgaris]
          Length = 1834

 Score = 2726 bits (7066), Expect = 0.0
 Identities = 1346/1511 (89%), Positives = 1425/1511 (94%)
 Frame = -1

Query: 4858 EIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTIDRKMKCETCMANMAECPGHFGHLELA 4679
            EIRQMSVVQ+EHGET ERGKPK AGLSDPR+GTIDRK+KCETC A+MAECPGHFGHLELA
Sbjct: 27   EIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKLKCETCTASMAECPGHFGHLELA 86

Query: 4678 KPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAKFKQALKIRNPKNRLKRIYDACKSKKK 4499
            KPMFHIGFLKTVL IMRCVCFNCSKILADE+D KFKQAL+IRNPKNRLK+I DACK+K K
Sbjct: 87   KPMFHIGFLKTVLTIMRCVCFNCSKILADENDHKFKQALRIRNPKNRLKKILDACKNKSK 146

Query: 4498 CAXXXXXXXXXXXXXDEPIKKTRNGCGAQQPNITIDGMKMVAEYKAPKKKSDEQEQLPEP 4319
            C               EP+KK+R GCGAQQP ITI+GMK++AEYKA +KKSD+QEQLPEP
Sbjct: 147  CEGGDEIDIPGQDTD-EPVKKSRGGCGAQQPKITIEGMKIIAEYKAQRKKSDDQEQLPEP 205

Query: 4318 AERKQILSAERVLSVLKRITDDDCLLLGLNPKFARPDWMILQVLXXXXXXXXPSVMMDTS 4139
             ERKQ LSAERVL VLKRI+D+DC LLGLNPK+ARPDWMILQVL        PSVMMDTS
Sbjct: 206  VERKQTLSAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS 265

Query: 4138 SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNDLPGQPRAT 3959
            SRSEDDLTHQLAMIIRHNENL+RQERNG+PAHIISEFAQLLQFHIATYFDN+LPG PRAT
Sbjct: 266  SRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRAT 325

Query: 3958 QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 3779
            QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT
Sbjct: 326  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 385

Query: 3778 YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKV 3599
            YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR+DGQRLDLRYLKKSSDHHLELGYKV
Sbjct: 386  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKV 445

Query: 3598 ERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 3419
            ERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP
Sbjct: 446  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 505

Query: 3418 QSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW 3239
            QSFETRAEV+ELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI KDVFMN LMW
Sbjct: 506  QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFISKDVFMNTLMW 565

Query: 3238 WEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINLIRFSAWHAESEVGSITPGDTLVRI 3059
            WEDFDGK+P P ILKP PLWTGKQVFNLIIPK INLIR+S+WH+ESE GSITPGDT+VRI
Sbjct: 566  WEDFDGKVPTPTILKPEPLWTGKQVFNLIIPKPINLIRYSSWHSESERGSITPGDTMVRI 625

Query: 3058 EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 2879
            EKGELL+GTLCKK LGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG
Sbjct: 626  EKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 685

Query: 2878 DTIADAATMEKINETISKAKNDVKELIKLAQEKQLEAEPGRTMMESFENKVNQVLNKARD 2699
            DTIADA+TME IN+TIS AK  VK+LI+ AQEK+LEAEPGRTMM+SFEN+VNQ LN+ARD
Sbjct: 686  DTIADASTMETINQTISAAKEKVKQLIRDAQEKKLEAEPGRTMMDSFENRVNQTLNRARD 745

Query: 2698 DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFNERTLPHF 2519
            DAG+SAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF +RTLPHF
Sbjct: 746  DAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHF 805

Query: 2518 TKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 2339
            TKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED
Sbjct: 806  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 865

Query: 2338 IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFVHVFKYELDDDNWN 2159
            IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+QKLDSLKMKK EF  VF+YE DD+NW 
Sbjct: 866  IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKTEFDRVFRYEFDDENWK 925

Query: 2158 PSYMQPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDVTMPMPVNLKRLIWN 1979
            P+YM  E VEDLKTIREFRNVF+AEVQKLEADRYQL TEIATTGD ++P+PVNLKRLIWN
Sbjct: 926  PTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRYQLATEIATTGDSSLPLPVNLKRLIWN 985

Query: 1978 AQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDFLSMEAQKNATLLFNILLRSTF 1799
            AQKTFK+D RRPSDMHPMEIVEAIDKLQERL+VVPG+D LS EAQKNATLLFNILLRSTF
Sbjct: 986  AQKTFKVDFRRPSDMHPMEIVEAIDKLQERLRVVPGEDLLSQEAQKNATLLFNILLRSTF 1045

Query: 1798 ASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1619
            ASKRVL+EYRL+REAFEWV+GEIESRFLQSLVA GEMIGCVAAQSIGEPATQMTLNTFHY
Sbjct: 1046 ASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASGEMIGCVAAQSIGEPATQMTLNTFHY 1105

Query: 1618 AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSV 1439
            AGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYL P+V K KE AK+VQCALEYTTLRSV
Sbjct: 1106 AGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLNPDVGKTKERAKSVQCALEYTTLRSV 1165

Query: 1438 THATEIWYDPDPMSTIIEEDVDFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLS 1259
            T ATE+WYDP+PMSTII+EDVDFVKSYYEMPDE++A EKISPWLLRIELNREMMVDKKLS
Sbjct: 1166 TQATEVWYDPEPMSTIIDEDVDFVKSYYEMPDEEVALEKISPWLLRIELNREMMVDKKLS 1225

Query: 1258 MADIAEKINREFDDDLTCIFNDDNADKLILRIRIMNDDAPKGELQDESAEDDVFLKKIES 1079
            MADIAEKIN EFDDDLTCIFNDDNA+KLILRIRIMND+APKGE+QDESAEDDVFLKKIES
Sbjct: 1226 MADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGEIQDESAEDDVFLKKIES 1285

Query: 1078 NMLTEMALRGIPDINKVFIKSGKINRFDESEGFKSDVEWMLDTEGVNLLAVICHEDVDAT 899
            NMLTEM LRGIPDINKVFIK+ K+ +FDESEGFK + EWMLDTEGVNLLAV+CHEDVDAT
Sbjct: 1286 NMLTEMTLRGIPDINKVFIKNTKVQKFDESEGFKPNEEWMLDTEGVNLLAVMCHEDVDAT 1345

Query: 898  RTTSNHLIEVIEILGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 719
            RTTSNHLIEVIE+LGIEAVRR+LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT
Sbjct: 1346 RTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 1405

Query: 718  RHGINRNDTGPMMRCSFEETVDILLDAAVFAEADHLRGVTENIMLGQLAPIGTGSCALYL 539
            RHGINRNDTGPMMRCSFEETVDILLDAAV+AE DHLRGVTENIMLGQLAPIGTG CALYL
Sbjct: 1406 RHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGECALYL 1465

Query: 538  NDQMLQQAIELQLPSYMDGGLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPITDA 359
            ND+ML+ AIELQLPSYMD GLDFGMTPARSPISGTPYHEG+MSPSYLLSPN+R SP +DA
Sbjct: 1466 NDEMLKNAIELQLPSYMD-GLDFGMTPARSPISGTPYHEGLMSPSYLLSPNLRLSPTSDA 1524

Query: 358  QFSPYVGGMAF 326
            QFSPYVGGMAF
Sbjct: 1525 QFSPYVGGMAF 1535


>ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5
            [Citrus sinensis]
          Length = 1963

 Score = 2724 bits (7062), Expect = 0.0
 Identities = 1343/1511 (88%), Positives = 1424/1511 (94%)
 Frame = -1

Query: 4858 EIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTIDRKMKCETCMANMAECPGHFGHLELA 4679
            EIRQMSVVQ+EHGET ERGKPKP GLSDPR+GTIDRKMKCETC ANMAECPGHFGHLELA
Sbjct: 27   EIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELA 86

Query: 4678 KPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAKFKQALKIRNPKNRLKRIYDACKSKKK 4499
            KPMFHIGF+KTVL+IMR VCFNCSKILADEDD KFKQALKIRNPKNRLK+I DACK+K K
Sbjct: 87   KPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTK 146

Query: 4498 CAXXXXXXXXXXXXXDEPIKKTRNGCGAQQPNITIDGMKMVAEYKAPKKKSDEQEQLPEP 4319
            C               EP+KK + GCGAQQP +TI+GMKM+AEYKA +KK+D+QEQLPEP
Sbjct: 147  CEGGDEIDVPGQDGE-EPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEP 205

Query: 4318 AERKQILSAERVLSVLKRITDDDCLLLGLNPKFARPDWMILQVLXXXXXXXXPSVMMDTS 4139
             ERKQ L+AERVL VLKRI+D+DC LLGLNPK+ARPDWMILQVL        PSVMMDTS
Sbjct: 206  VERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS 265

Query: 4138 SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNDLPGQPRAT 3959
            SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDN+LPGQPRAT
Sbjct: 266  SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRAT 325

Query: 3958 QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 3779
            QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT
Sbjct: 326  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 385

Query: 3778 YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKV 3599
            YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR+DGQRLDLRYLKKSSDHHLELGYKV
Sbjct: 386  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKV 445

Query: 3598 ERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 3419
            ERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP
Sbjct: 446  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 505

Query: 3418 QSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW 3239
            QSFETRAEV+ELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW
Sbjct: 506  QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW 565

Query: 3238 WEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINLIRFSAWHAESEVGSITPGDTLVRI 3059
            WEDFDGK+P P ILKPRPLWTGKQVFNLIIPKQINL R +AWHA+++ G +T GDTLVRI
Sbjct: 566  WEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRI 625

Query: 3058 EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 2879
            EKGELLSGTLCKK LGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG
Sbjct: 626  EKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 685

Query: 2878 DTIADAATMEKINETISKAKNDVKELIKLAQEKQLEAEPGRTMMESFENKVNQVLNKARD 2699
            DTIADA TME IN+TISKAKN+VK LIK AQ+K LE EPGRTMMESFENKVNQVLN ARD
Sbjct: 686  DTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARD 745

Query: 2698 DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFNERTLPHF 2519
            +AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF +RTLPHF
Sbjct: 746  EAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHF 805

Query: 2518 TKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 2339
            TKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED
Sbjct: 806  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 865

Query: 2338 IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFVHVFKYELDDDNWN 2159
            IMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ LDSLKMKK+EF   F++E+D++NWN
Sbjct: 866  IMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWN 925

Query: 2158 PSYMQPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDVTMPMPVNLKRLIWN 1979
            P+YM  E+++DLKTI+E R+VFDAEVQKLEADRYQL TEIAT+GD + P+PVNLKRLIWN
Sbjct: 926  PNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWN 985

Query: 1978 AQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDFLSMEAQKNATLLFNILLRSTF 1799
            AQKTFK+D RRPSDMHPME+VEA+DKLQERLKVVPG+D LS+EAQKNATL FNILLRSTF
Sbjct: 986  AQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTF 1045

Query: 1798 ASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1619
            ASKRVLKE+RLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY
Sbjct: 1046 ASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1105

Query: 1618 AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSV 1439
            AGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LKP VN  KE AKNVQCALEYTTLRSV
Sbjct: 1106 AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSV 1165

Query: 1438 THATEIWYDPDPMSTIIEEDVDFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLS 1259
            T ATE+WYDPDPM TIIEEDV+FVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLS
Sbjct: 1166 TEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLS 1225

Query: 1258 MADIAEKINREFDDDLTCIFNDDNADKLILRIRIMNDDAPKGELQDESAEDDVFLKKIES 1079
            MA +AEKIN+EFDDDLTCIFNDDNADKLILRIRIMND+APKGEL DESAEDDVFLKKIES
Sbjct: 1226 MAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIES 1285

Query: 1078 NMLTEMALRGIPDINKVFIKSGKINRFDESEGFKSDVEWMLDTEGVNLLAVICHEDVDAT 899
            NMLTEMALRGIPDINKVFIK GK  ++D++EGFKS+ EWMLDTEGVNLLAV+CHEDVDA 
Sbjct: 1286 NMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKSEDEWMLDTEGVNLLAVMCHEDVDAR 1345

Query: 898  RTTSNHLIEVIEILGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 719
            RTTSNHLIE+IE+LGIEAVRR+LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT
Sbjct: 1346 RTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 1405

Query: 718  RHGINRNDTGPMMRCSFEETVDILLDAAVFAEADHLRGVTENIMLGQLAPIGTGSCALYL 539
            RHGINRNDTGPMMRCSFEETVDILLDAAVFAE+D+LRGVTENIMLGQLAPIGTG C+LYL
Sbjct: 1406 RHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYL 1465

Query: 538  NDQMLQQAIELQLPSYMDGGLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPITDA 359
            ND+ML+ AIELQLPSYM+ GL+FGMTPARSP+SGTPYH+GMMSP YL SPN+R SP+TDA
Sbjct: 1466 NDEMLKNAIELQLPSYME-GLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDA 1524

Query: 358  QFSPYVGGMAF 326
            QFSPYVGGMAF
Sbjct: 1525 QFSPYVGGMAF 1535


>ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X4
            [Citrus sinensis]
          Length = 1853

 Score = 2724 bits (7062), Expect = 0.0
 Identities = 1343/1511 (88%), Positives = 1424/1511 (94%)
 Frame = -1

Query: 4858 EIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTIDRKMKCETCMANMAECPGHFGHLELA 4679
            EIRQMSVVQ+EHGET ERGKPKP GLSDPR+GTIDRKMKCETC ANMAECPGHFGHLELA
Sbjct: 27   EIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELA 86

Query: 4678 KPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAKFKQALKIRNPKNRLKRIYDACKSKKK 4499
            KPMFHIGF+KTVL+IMR VCFNCSKILADEDD KFKQALKIRNPKNRLK+I DACK+K K
Sbjct: 87   KPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTK 146

Query: 4498 CAXXXXXXXXXXXXXDEPIKKTRNGCGAQQPNITIDGMKMVAEYKAPKKKSDEQEQLPEP 4319
            C               EP+KK + GCGAQQP +TI+GMKM+AEYKA +KK+D+QEQLPEP
Sbjct: 147  CEGGDEIDVPGQDGE-EPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEP 205

Query: 4318 AERKQILSAERVLSVLKRITDDDCLLLGLNPKFARPDWMILQVLXXXXXXXXPSVMMDTS 4139
             ERKQ L+AERVL VLKRI+D+DC LLGLNPK+ARPDWMILQVL        PSVMMDTS
Sbjct: 206  VERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS 265

Query: 4138 SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNDLPGQPRAT 3959
            SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDN+LPGQPRAT
Sbjct: 266  SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRAT 325

Query: 3958 QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 3779
            QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT
Sbjct: 326  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 385

Query: 3778 YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKV 3599
            YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR+DGQRLDLRYLKKSSDHHLELGYKV
Sbjct: 386  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKV 445

Query: 3598 ERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 3419
            ERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP
Sbjct: 446  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 505

Query: 3418 QSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW 3239
            QSFETRAEV+ELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW
Sbjct: 506  QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW 565

Query: 3238 WEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINLIRFSAWHAESEVGSITPGDTLVRI 3059
            WEDFDGK+P P ILKPRPLWTGKQVFNLIIPKQINL R +AWHA+++ G +T GDTLVRI
Sbjct: 566  WEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRI 625

Query: 3058 EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 2879
            EKGELLSGTLCKK LGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG
Sbjct: 626  EKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 685

Query: 2878 DTIADAATMEKINETISKAKNDVKELIKLAQEKQLEAEPGRTMMESFENKVNQVLNKARD 2699
            DTIADA TME IN+TISKAKN+VK LIK AQ+K LE EPGRTMMESFENKVNQVLN ARD
Sbjct: 686  DTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARD 745

Query: 2698 DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFNERTLPHF 2519
            +AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF +RTLPHF
Sbjct: 746  EAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHF 805

Query: 2518 TKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 2339
            TKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED
Sbjct: 806  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 865

Query: 2338 IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFVHVFKYELDDDNWN 2159
            IMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ LDSLKMKK+EF   F++E+D++NWN
Sbjct: 866  IMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWN 925

Query: 2158 PSYMQPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDVTMPMPVNLKRLIWN 1979
            P+YM  E+++DLKTI+E R+VFDAEVQKLEADRYQL TEIAT+GD + P+PVNLKRLIWN
Sbjct: 926  PNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWN 985

Query: 1978 AQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDFLSMEAQKNATLLFNILLRSTF 1799
            AQKTFK+D RRPSDMHPME+VEA+DKLQERLKVVPG+D LS+EAQKNATL FNILLRSTF
Sbjct: 986  AQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTF 1045

Query: 1798 ASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1619
            ASKRVLKE+RLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY
Sbjct: 1046 ASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1105

Query: 1618 AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSV 1439
            AGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LKP VN  KE AKNVQCALEYTTLRSV
Sbjct: 1106 AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSV 1165

Query: 1438 THATEIWYDPDPMSTIIEEDVDFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLS 1259
            T ATE+WYDPDPM TIIEEDV+FVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLS
Sbjct: 1166 TEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLS 1225

Query: 1258 MADIAEKINREFDDDLTCIFNDDNADKLILRIRIMNDDAPKGELQDESAEDDVFLKKIES 1079
            MA +AEKIN+EFDDDLTCIFNDDNADKLILRIRIMND+APKGEL DESAEDDVFLKKIES
Sbjct: 1226 MAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIES 1285

Query: 1078 NMLTEMALRGIPDINKVFIKSGKINRFDESEGFKSDVEWMLDTEGVNLLAVICHEDVDAT 899
            NMLTEMALRGIPDINKVFIK GK  ++D++EGFKS+ EWMLDTEGVNLLAV+CHEDVDA 
Sbjct: 1286 NMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKSEDEWMLDTEGVNLLAVMCHEDVDAR 1345

Query: 898  RTTSNHLIEVIEILGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 719
            RTTSNHLIE+IE+LGIEAVRR+LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT
Sbjct: 1346 RTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 1405

Query: 718  RHGINRNDTGPMMRCSFEETVDILLDAAVFAEADHLRGVTENIMLGQLAPIGTGSCALYL 539
            RHGINRNDTGPMMRCSFEETVDILLDAAVFAE+D+LRGVTENIMLGQLAPIGTG C+LYL
Sbjct: 1406 RHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYL 1465

Query: 538  NDQMLQQAIELQLPSYMDGGLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPITDA 359
            ND+ML+ AIELQLPSYM+ GL+FGMTPARSP+SGTPYH+GMMSP YL SPN+R SP+TDA
Sbjct: 1466 NDEMLKNAIELQLPSYME-GLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDA 1524

Query: 358  QFSPYVGGMAF 326
            QFSPYVGGMAF
Sbjct: 1525 QFSPYVGGMAF 1535


>ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X3
            [Citrus sinensis]
          Length = 1790

 Score = 2724 bits (7062), Expect = 0.0
 Identities = 1343/1511 (88%), Positives = 1424/1511 (94%)
 Frame = -1

Query: 4858 EIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTIDRKMKCETCMANMAECPGHFGHLELA 4679
            EIRQMSVVQ+EHGET ERGKPKP GLSDPR+GTIDRKMKCETC ANMAECPGHFGHLELA
Sbjct: 27   EIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELA 86

Query: 4678 KPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAKFKQALKIRNPKNRLKRIYDACKSKKK 4499
            KPMFHIGF+KTVL+IMR VCFNCSKILADEDD KFKQALKIRNPKNRLK+I DACK+K K
Sbjct: 87   KPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTK 146

Query: 4498 CAXXXXXXXXXXXXXDEPIKKTRNGCGAQQPNITIDGMKMVAEYKAPKKKSDEQEQLPEP 4319
            C               EP+KK + GCGAQQP +TI+GMKM+AEYKA +KK+D+QEQLPEP
Sbjct: 147  CEGGDEIDVPGQDGE-EPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEP 205

Query: 4318 AERKQILSAERVLSVLKRITDDDCLLLGLNPKFARPDWMILQVLXXXXXXXXPSVMMDTS 4139
             ERKQ L+AERVL VLKRI+D+DC LLGLNPK+ARPDWMILQVL        PSVMMDTS
Sbjct: 206  VERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS 265

Query: 4138 SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNDLPGQPRAT 3959
            SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDN+LPGQPRAT
Sbjct: 266  SRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRAT 325

Query: 3958 QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 3779
            QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT
Sbjct: 326  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 385

Query: 3778 YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKV 3599
            YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR+DGQRLDLRYLKKSSDHHLELGYKV
Sbjct: 386  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKV 445

Query: 3598 ERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 3419
            ERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP
Sbjct: 446  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 505

Query: 3418 QSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW 3239
            QSFETRAEV+ELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW
Sbjct: 506  QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW 565

Query: 3238 WEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINLIRFSAWHAESEVGSITPGDTLVRI 3059
            WEDFDGK+P P ILKPRPLWTGKQVFNLIIPKQINL R +AWHA+++ G +T GDTLVRI
Sbjct: 566  WEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRI 625

Query: 3058 EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 2879
            EKGELLSGTLCKK LGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG
Sbjct: 626  EKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 685

Query: 2878 DTIADAATMEKINETISKAKNDVKELIKLAQEKQLEAEPGRTMMESFENKVNQVLNKARD 2699
            DTIADA TME IN+TISKAKN+VK LIK AQ+K LE EPGRTMMESFENKVNQVLN ARD
Sbjct: 686  DTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARD 745

Query: 2698 DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFNERTLPHF 2519
            +AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF +RTLPHF
Sbjct: 746  EAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHF 805

Query: 2518 TKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 2339
            TKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED
Sbjct: 806  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 865

Query: 2338 IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFVHVFKYELDDDNWN 2159
            IMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ LDSLKMKK+EF   F++E+D++NWN
Sbjct: 866  IMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWN 925

Query: 2158 PSYMQPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDVTMPMPVNLKRLIWN 1979
            P+YM  E+++DLKTI+E R+VFDAEVQKLEADRYQL TEIAT+GD + P+PVNLKRLIWN
Sbjct: 926  PNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWN 985

Query: 1978 AQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDFLSMEAQKNATLLFNILLRSTF 1799
            AQKTFK+D RRPSDMHPME+VEA+DKLQERLKVVPG+D LS+EAQKNATL FNILLRSTF
Sbjct: 986  AQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTF 1045

Query: 1798 ASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1619
            ASKRVLKE+RLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY
Sbjct: 1046 ASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1105

Query: 1618 AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSV 1439
            AGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LKP VN  KE AKNVQCALEYTTLRSV
Sbjct: 1106 AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSV 1165

Query: 1438 THATEIWYDPDPMSTIIEEDVDFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLS 1259
            T ATE+WYDPDPM TIIEEDV+FVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLS
Sbjct: 1166 TEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLS 1225

Query: 1258 MADIAEKINREFDDDLTCIFNDDNADKLILRIRIMNDDAPKGELQDESAEDDVFLKKIES 1079
            MA +AEKIN+EFDDDLTCIFNDDNADKLILRIRIMND+APKGEL DESAEDDVFLKKIES
Sbjct: 1226 MAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIES 1285

Query: 1078 NMLTEMALRGIPDINKVFIKSGKINRFDESEGFKSDVEWMLDTEGVNLLAVICHEDVDAT 899
            NMLTEMALRGIPDINKVFIK GK  ++D++EGFKS+ EWMLDTEGVNLLAV+CHEDVDA 
Sbjct: 1286 NMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKSEDEWMLDTEGVNLLAVMCHEDVDAR 1345

Query: 898  RTTSNHLIEVIEILGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 719
            RTTSNHLIE+IE+LGIEAVRR+LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT
Sbjct: 1346 RTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 1405

Query: 718  RHGINRNDTGPMMRCSFEETVDILLDAAVFAEADHLRGVTENIMLGQLAPIGTGSCALYL 539
            RHGINRNDTGPMMRCSFEETVDILLDAAVFAE+D+LRGVTENIMLGQLAPIGTG C+LYL
Sbjct: 1406 RHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYL 1465

Query: 538  NDQMLQQAIELQLPSYMDGGLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPITDA 359
            ND+ML+ AIELQLPSYM+ GL+FGMTPARSP+SGTPYH+GMMSP YL SPN+R SP+TDA
Sbjct: 1466 NDEMLKNAIELQLPSYME-GLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDA 1524

Query: 358  QFSPYVGGMAF 326
            QFSPYVGGMAF
Sbjct: 1525 QFSPYVGGMAF 1535