BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00004328
         (621 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EOX98333.1| DNA-directed RNA polymerase family protein [Theob...   263   2e-68
ref|XP_006422955.1| hypothetical protein CICLE_v10028849mg [Citr...   261   1e-67
emb|CBI40277.3| unnamed protein product [Vitis vinifera]              261   1e-67
ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II su...   261   1e-67
emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]   261   1e-67
ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, puta...   259   4e-67
ref|XP_006853170.1| hypothetical protein AMTR_s00038p00194050 [A...   259   6e-67
ref|XP_004304034.1| PREDICTED: DNA-directed RNA polymerase II su...   253   4e-65
ref|XP_004505300.1| PREDICTED: DNA-directed RNA polymerase II su...   252   5e-65
ref|XP_001765827.1| predicted protein [Physcomitrella patens] gi...   251   9e-65
gb|EMJ03015.1| hypothetical protein PRUPE_ppa008812mg [Prunus pe...   251   1e-64
gb|ESW29765.1| hypothetical protein PHAVU_002G097400g [Phaseolus...   248   8e-64
ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerases II, ...   248   8e-64
ref|XP_003576823.1| PREDICTED: DNA-directed RNA polymerase II su...   248   1e-63
ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerases II, ...   248   1e-63
dbj|BAN19962.1| RNA polymerase II, partial [Echinochloa phyllopo...   246   3e-63
ref|NP_001062572.1| Os09g0110400 [Oryza sativa Japonica Group] g...   246   4e-63
gb|EMT28290.1| DNA-directed RNA polymerase II subunit RPB3-A [Ae...   245   8e-63
gb|ADE77570.1| unknown [Picea sitchensis]                             244   1e-62
ref|XP_006660419.1| PREDICTED: DNA-directed RNA polymerases II, ...   244   2e-62

>gb|EOX98333.1| DNA-directed RNA polymerase family protein [Theobroma cacao]
          Length = 318

 Score =  263 bits (673), Expect = 2e-68
 Identities = 131/174 (75%), Positives = 150/174 (86%)
 Frame = +1

Query: 22  DPGGYESPEQKGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPQIHINXX 201
           D  GY+S EQ+GI+IVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP+IHIN  
Sbjct: 139 DSAGYDSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINED 198

Query: 202 XXXXXXXXXKRSWVESSPTKVFGIDPNTQQVVVIDSEAYTYDDEVLKKSEAMGKPGLVEI 381
                    K+S+VESSPT+VF IDPNTQQVVV+D EAYTYDDEVLKK+EAMGKPGLVEI
Sbjct: 199 MMETLTLEEKQSFVESSPTRVFDIDPNTQQVVVVDPEAYTYDDEVLKKAEAMGKPGLVEI 258

Query: 382 YAKEDSFIFTIESTGAIKASQMLINAIDVLKQKLDAVRLQDEASDMNELTSHLG 543
           YAKEDSFIFT+ESTGAIKASQ+++NAI+VLKQKLDAVRL ++  + ++    LG
Sbjct: 259 YAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVEADDQFGELG 312


>ref|XP_006422955.1| hypothetical protein CICLE_v10028849mg [Citrus clementina]
           gi|568867393|ref|XP_006487022.1| PREDICTED: DNA-directed
           RNA polymerases II, IV and V subunit 3-like [Citrus
           sinensis] gi|557524889|gb|ESR36195.1| hypothetical
           protein CICLE_v10028849mg [Citrus clementina]
          Length = 319

 Score =  261 bits (667), Expect = 1e-67
 Identities = 130/175 (74%), Positives = 150/175 (85%), Gaps = 1/175 (0%)
 Frame = +1

Query: 22  DPGGYESPEQ-KGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPQIHINX 198
           DP GY+S +Q +GI+IVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP+IHIN 
Sbjct: 139 DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINE 198

Query: 199 XXXXXXXXXXKRSWVESSPTKVFGIDPNTQQVVVIDSEAYTYDDEVLKKSEAMGKPGLVE 378
                     K+SWVESSPTKVF IDPNT QV V+D+EAYTYDDEV+KK+EAMGKPGLVE
Sbjct: 199 DLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVE 258

Query: 379 IYAKEDSFIFTIESTGAIKASQMLINAIDVLKQKLDAVRLQDEASDMNELTSHLG 543
           IYAKEDSFIFT+ESTGAIKASQ+++NAI+VLKQKLDAVRL ++  + ++    LG
Sbjct: 259 IYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVEADDQFGELG 313


>emb|CBI40277.3| unnamed protein product [Vitis vinifera]
          Length = 206

 Score =  261 bits (666), Expect = 1e-67
 Identities = 130/175 (74%), Positives = 149/175 (85%)
 Frame = +1

Query: 19  ADPGGYESPEQKGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPQIHINX 198
           +D  GY+S ++KGI+IVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP+IHIN 
Sbjct: 26  SDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINE 85

Query: 199 XXXXXXXXXXKRSWVESSPTKVFGIDPNTQQVVVIDSEAYTYDDEVLKKSEAMGKPGLVE 378
                     K SWVESSPTKVF ID ++QQVVV D+EAYTYDDEVLKK+EAMGKPGLVE
Sbjct: 86  DLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTYDDEVLKKAEAMGKPGLVE 145

Query: 379 IYAKEDSFIFTIESTGAIKASQMLINAIDVLKQKLDAVRLQDEASDMNELTSHLG 543
           IYAKEDSFIFT+ESTGAIKASQ+++NAIDVLKQKLDAVRL ++  + ++    LG
Sbjct: 146 IYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSEDTVEADDQFGELG 200


>ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A [Vitis
           vinifera]
          Length = 318

 Score =  261 bits (666), Expect = 1e-67
 Identities = 130/175 (74%), Positives = 149/175 (85%)
 Frame = +1

Query: 19  ADPGGYESPEQKGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPQIHINX 198
           +D  GY+S ++KGI+IVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP+IHIN 
Sbjct: 138 SDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINE 197

Query: 199 XXXXXXXXXXKRSWVESSPTKVFGIDPNTQQVVVIDSEAYTYDDEVLKKSEAMGKPGLVE 378
                     K SWVESSPTKVF ID ++QQVVV D+EAYTYDDEVLKK+EAMGKPGLVE
Sbjct: 198 DLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTYDDEVLKKAEAMGKPGLVE 257

Query: 379 IYAKEDSFIFTIESTGAIKASQMLINAIDVLKQKLDAVRLQDEASDMNELTSHLG 543
           IYAKEDSFIFT+ESTGAIKASQ+++NAIDVLKQKLDAVRL ++  + ++    LG
Sbjct: 258 IYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSEDTVEADDQFGELG 312


>emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
          Length = 318

 Score =  261 bits (666), Expect = 1e-67
 Identities = 130/175 (74%), Positives = 149/175 (85%)
 Frame = +1

Query: 19  ADPGGYESPEQKGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPQIHINX 198
           +D  GY+S ++KGI+IVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP+IHIN 
Sbjct: 138 SDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINE 197

Query: 199 XXXXXXXXXXKRSWVESSPTKVFGIDPNTQQVVVIDSEAYTYDDEVLKKSEAMGKPGLVE 378
                     K SWVESSPTKVF ID ++QQVVV D+EAYTYDDEVLKK+EAMGKPGLVE
Sbjct: 198 DLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTYDDEVLKKAEAMGKPGLVE 257

Query: 379 IYAKEDSFIFTIESTGAIKASQMLINAIDVLKQKLDAVRLQDEASDMNELTSHLG 543
           IYAKEDSFIFT+ESTGAIKASQ+++NAIDVLKQKLDAVRL ++  + ++    LG
Sbjct: 258 IYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSEDTVEADDQFGELG 312


>ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
           gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase
           II subunit, putative [Ricinus communis]
          Length = 318

 Score =  259 bits (662), Expect = 4e-67
 Identities = 127/175 (72%), Positives = 148/175 (84%)
 Frame = +1

Query: 19  ADPGGYESPEQKGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPQIHINX 198
           +D  GY+S EQ+GI+IVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP IHIN 
Sbjct: 138 SDSSGYDSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIHINE 197

Query: 199 XXXXXXXXXXKRSWVESSPTKVFGIDPNTQQVVVIDSEAYTYDDEVLKKSEAMGKPGLVE 378
                     K+SWVESSPTKVF IDPNTQQVVV+D EAYTYD+EV+KK+E+MGKPGLV 
Sbjct: 198 DLMESLSLEEKQSWVESSPTKVFDIDPNTQQVVVVDPEAYTYDEEVIKKAESMGKPGLVN 257

Query: 379 IYAKEDSFIFTIESTGAIKASQMLINAIDVLKQKLDAVRLQDEASDMNELTSHLG 543
           I AKEDSFIFT+ESTGAIKASQ+++NAI++LKQKLDAVRL ++  + ++    LG
Sbjct: 258 IQAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRLSEDTVEADDQFGELG 312


>ref|XP_006853170.1| hypothetical protein AMTR_s00038p00194050 [Amborella trichopoda]
           gi|548856809|gb|ERN14637.1| hypothetical protein
           AMTR_s00038p00194050 [Amborella trichopoda]
          Length = 324

 Score =  259 bits (661), Expect = 6e-67
 Identities = 128/174 (73%), Positives = 146/174 (83%)
 Frame = +1

Query: 22  DPGGYESPEQKGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPQIHINXX 201
           D  G+++ EQ+GI+IVKLRRGQELRLRAIARKGIGKDHAKWSP ATVTFMYEP+IHIN  
Sbjct: 143 DSNGFDASEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPGATVTFMYEPEIHINDD 202

Query: 202 XXXXXXXXXKRSWVESSPTKVFGIDPNTQQVVVIDSEAYTYDDEVLKKSEAMGKPGLVEI 381
                    KR WVESSPT+VF IDPNT QVVV+D EAYTYDDEV+KK+EAMGKPGLVEI
Sbjct: 203 LMETLSLDEKREWVESSPTRVFDIDPNTHQVVVVDPEAYTYDDEVIKKAEAMGKPGLVEI 262

Query: 382 YAKEDSFIFTIESTGAIKASQMLINAIDVLKQKLDAVRLQDEASDMNELTSHLG 543
           YA+EDSFIFT+ESTGAIKASQ++INAI+VLKQKLDAVRL  +  + +E    LG
Sbjct: 263 YAREDSFIFTVESTGAIKASQLVINAIEVLKQKLDAVRLSLDTEEGDEQFGELG 316


>ref|XP_004304034.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Fragaria vesca subsp. vesca]
          Length = 318

 Score =  253 bits (645), Expect = 4e-65
 Identities = 125/175 (71%), Positives = 146/175 (83%)
 Frame = +1

Query: 19  ADPGGYESPEQKGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPQIHINX 198
           +D  GYE+ EQ+GI+IVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP I IN 
Sbjct: 138 SDASGYEASEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIRINE 197

Query: 199 XXXXXXXXXXKRSWVESSPTKVFGIDPNTQQVVVIDSEAYTYDDEVLKKSEAMGKPGLVE 378
                     K +WV+SSPTKVF IDPNT +VVV+D EAYTYDDEV+KK+EAMGKPGLV+
Sbjct: 198 EMMDTLSLEDKAAWVDSSPTKVFEIDPNTGKVVVVDPEAYTYDDEVIKKAEAMGKPGLVD 257

Query: 379 IYAKEDSFIFTIESTGAIKASQMLINAIDVLKQKLDAVRLQDEASDMNELTSHLG 543
           I AKEDSFIFT+ESTGAIKASQ+L+NAI++LKQKLDAVRL ++  + ++    LG
Sbjct: 258 ITAKEDSFIFTVESTGAIKASQLLLNAIEILKQKLDAVRLSEDTVEADDQFGELG 312


>ref|XP_004505300.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Cicer arietinum]
          Length = 319

 Score =  252 bits (644), Expect = 5e-65
 Identities = 124/176 (70%), Positives = 146/176 (82%)
 Frame = +1

Query: 16  SADPGGYESPEQKGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPQIHIN 195
           SADP   ES + +GI+IVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP IHIN
Sbjct: 138 SADPSSLESSDGRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIHIN 197

Query: 196 XXXXXXXXXXXKRSWVESSPTKVFGIDPNTQQVVVIDSEAYTYDDEVLKKSEAMGKPGLV 375
                      KR WV+SSPT+VF IDP TQQV+V+D EAY+YDDEV+KK+EAMGKPGLV
Sbjct: 198 EDLMESLTLEEKREWVDSSPTRVFDIDPVTQQVMVVDPEAYSYDDEVIKKAEAMGKPGLV 257

Query: 376 EIYAKEDSFIFTIESTGAIKASQMLINAIDVLKQKLDAVRLQDEASDMNELTSHLG 543
           EI AK+DSFIFT+ESTGA+KASQ+L+NAI++LKQKLDAVRL ++  + ++    LG
Sbjct: 258 EITAKQDSFIFTVESTGAVKASQLLLNAIEILKQKLDAVRLSEDTVEADDQFGELG 313


>ref|XP_001765827.1| predicted protein [Physcomitrella patens]
           gi|162683004|gb|EDQ69418.1| predicted protein
           [Physcomitrella patens]
          Length = 324

 Score =  251 bits (642), Expect = 9e-65
 Identities = 127/183 (69%), Positives = 151/183 (82%), Gaps = 4/183 (2%)
 Frame = +1

Query: 4   ASAMSADPGGYESPEQKGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPQ 183
           A+  +AD GG+ES + +GILIVKLR+GQEL+LRAIARKGIGKDHAKWSPAATVTF YEP+
Sbjct: 137 AAGRAADMGGFESNDTRGILIVKLRKGQELKLRAIARKGIGKDHAKWSPAATVTFQYEPE 196

Query: 184 IHINXXXXXXXXXXXKRSWVESSPTKVFGIDPNTQQVVVIDSEAYTYDDEVLKKSEAMGK 363
           IHIN           K+ W++SSPTKVF +DP +QQVVV+D EAYTYD+EVLKK+EAMGK
Sbjct: 197 IHINEALMETLTLEEKQEWIDSSPTKVFELDPVSQQVVVVDPEAYTYDEEVLKKAEAMGK 256

Query: 364 PGLVEIYAKEDSFIFTIESTGAIKASQMLINAIDVLKQKLDAVRLQ---DEASD-MNELT 531
           PGLVEIY+KEDSFIFT+ESTGAIKASQM +NAI++LK KLDAVRL    +EA D   EL 
Sbjct: 257 PGLVEIYSKEDSFIFTVESTGAIKASQMFLNAIEILKSKLDAVRLSFDTEEADDQFGELG 316

Query: 532 SHL 540
           +H+
Sbjct: 317 AHM 319


>gb|EMJ03015.1| hypothetical protein PRUPE_ppa008812mg [Prunus persica]
          Length = 318

 Score =  251 bits (641), Expect = 1e-64
 Identities = 123/175 (70%), Positives = 145/175 (82%)
 Frame = +1

Query: 19  ADPGGYESPEQKGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPQIHINX 198
           +D  G ES EQKGI+IVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP I IN 
Sbjct: 138 SDSAGMESSEQKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIRINE 197

Query: 199 XXXXXXXXXXKRSWVESSPTKVFGIDPNTQQVVVIDSEAYTYDDEVLKKSEAMGKPGLVE 378
                     K++WVESSPTKVF  DP T++V+V+D EAYTYDDEV+KK+EAMGKPGLV+
Sbjct: 198 ELMDMLTLDEKKAWVESSPTKVFDFDPKTEKVMVVDPEAYTYDDEVIKKAEAMGKPGLVD 257

Query: 379 IYAKEDSFIFTIESTGAIKASQMLINAIDVLKQKLDAVRLQDEASDMNELTSHLG 543
           I AKEDSFIFT+ESTGA+KASQ+L+NAI++LKQKLDAVRL ++  + ++    LG
Sbjct: 258 IIAKEDSFIFTVESTGAVKASQLLLNAIEILKQKLDAVRLSEDTVEADDQFGELG 312


>gb|ESW29765.1| hypothetical protein PHAVU_002G097400g [Phaseolus vulgaris]
          Length = 318

 Score =  248 bits (634), Expect = 8e-64
 Identities = 119/175 (68%), Positives = 147/175 (84%)
 Frame = +1

Query: 19  ADPGGYESPEQKGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPQIHINX 198
           +DP   +S E +G++IVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP+IH+N 
Sbjct: 138 SDPASTDSSESRGVIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHLNE 197

Query: 199 XXXXXXXXXXKRSWVESSPTKVFGIDPNTQQVVVIDSEAYTYDDEVLKKSEAMGKPGLVE 378
                     KR WV+SSPT+VF IDP TQQV+V+DSEAY+YDDEV+KK+EAMGKPGLVE
Sbjct: 198 DLMETLTLEEKREWVDSSPTRVFEIDPVTQQVMVVDSEAYSYDDEVIKKAEAMGKPGLVE 257

Query: 379 IYAKEDSFIFTIESTGAIKASQMLINAIDVLKQKLDAVRLQDEASDMNELTSHLG 543
           I A++DSFIFT+ESTGAIK+SQ+++NAI++LKQKLDAVRL ++  + ++    LG
Sbjct: 258 IIARQDSFIFTVESTGAIKSSQLVLNAIEILKQKLDAVRLSEDTVEADDQFGELG 312


>ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3
           [Glycine max]
          Length = 319

 Score =  248 bits (634), Expect = 8e-64
 Identities = 120/175 (68%), Positives = 146/175 (83%)
 Frame = +1

Query: 19  ADPGGYESPEQKGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPQIHINX 198
           +DP   +S   +GI+IVKLRRGQEL+LRAIARKGIGKDHAKWSPAATVTFMYEP+IHIN 
Sbjct: 139 SDPSATDSDNNRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINE 198

Query: 199 XXXXXXXXXXKRSWVESSPTKVFGIDPNTQQVVVIDSEAYTYDDEVLKKSEAMGKPGLVE 378
                     KR WV+SSPT+VF IDP TQQV+V+D+EAYTYDDEVLKK+EAMGKPGLVE
Sbjct: 199 DLMETLTLEEKREWVDSSPTRVFEIDPVTQQVMVVDAEAYTYDDEVLKKAEAMGKPGLVE 258

Query: 379 IYAKEDSFIFTIESTGAIKASQMLINAIDVLKQKLDAVRLQDEASDMNELTSHLG 543
           I A++DSFIFT+ESTGA+KASQ+++NAI++LKQKLDAVRL ++  + ++    LG
Sbjct: 259 IIARQDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLSEDTVEADDQFGELG 313


>ref|XP_003576823.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Brachypodium distachyon]
          Length = 330

 Score =  248 bits (632), Expect = 1e-63
 Identities = 123/167 (73%), Positives = 139/167 (83%)
 Frame = +1

Query: 46  EQKGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPQIHINXXXXXXXXXX 225
           + +GILIVKLRRGQELRLRAIARKGI KDHAKWSPAATVTFMYEP I IN          
Sbjct: 163 DHRGILIVKLRRGQELRLRAIARKGIAKDHAKWSPAATVTFMYEPDIRINEELMETLTLE 222

Query: 226 XKRSWVESSPTKVFGIDPNTQQVVVIDSEAYTYDDEVLKKSEAMGKPGLVEIYAKEDSFI 405
            K SWVESSPTKVF IDPNTQQVVV+D EAYTYDDEV+KK+EAMGKPGL+EI AKEDSF+
Sbjct: 223 EKTSWVESSPTKVFDIDPNTQQVVVVDREAYTYDDEVIKKAEAMGKPGLIEISAKEDSFV 282

Query: 406 FTIESTGAIKASQMLINAIDVLKQKLDAVRLQDEASDMNELTSHLGI 546
           FT+E+TGAI A +++INAI VL+QKLDAVRLQ+E  D   L +HLG+
Sbjct: 283 FTVETTGAITAYELIINAITVLRQKLDAVRLQEEDGDFTGLDAHLGV 329


>ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
           [Glycine max]
          Length = 320

 Score =  248 bits (632), Expect = 1e-63
 Identities = 121/176 (68%), Positives = 148/176 (84%), Gaps = 1/176 (0%)
 Frame = +1

Query: 19  ADPGGYESPEQ-KGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPQIHIN 195
           +DP   +SP+  +GI+IVKLRRGQEL+LRAIARKGIGKDHAKWSPAATVTFMYEP+IHIN
Sbjct: 139 SDPSATDSPDNNRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPEIHIN 198

Query: 196 XXXXXXXXXXXKRSWVESSPTKVFGIDPNTQQVVVIDSEAYTYDDEVLKKSEAMGKPGLV 375
                      KR WV+SSPT+VF IDP TQQV+V+D+EAYTYDDEVLKK+EAMGKPGLV
Sbjct: 199 EDLMETLTLEEKREWVDSSPTRVFEIDPVTQQVMVVDAEAYTYDDEVLKKAEAMGKPGLV 258

Query: 376 EIYAKEDSFIFTIESTGAIKASQMLINAIDVLKQKLDAVRLQDEASDMNELTSHLG 543
           EI A++DSFIFT+ESTGA+KASQ+++NAI++LKQKLDAVRL ++  + ++    LG
Sbjct: 259 EIIARQDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLSEDTVEADDQFGELG 314


>dbj|BAN19962.1| RNA polymerase II, partial [Echinochloa phyllopogon]
          Length = 257

 Score =  246 bits (629), Expect = 3e-63
 Identities = 125/172 (72%), Positives = 144/172 (83%), Gaps = 1/172 (0%)
 Frame = +1

Query: 31  GYESPEQKGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPQIHINXXXXX 210
           G++  EQ+GILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP I IN     
Sbjct: 84  GFDPNEQRGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIRINEELMD 143

Query: 211 XXXXXXKRSWVESSPTKVFGIDPNTQQVVVIDS-EAYTYDDEVLKKSEAMGKPGLVEIYA 387
                 KRSW+ESSPTKVF +D  TQQV V+D+ EAYTYDDEV+KK+EAMGKPGLVEI A
Sbjct: 144 TLTLDEKRSWIESSPTKVFELDNVTQQVTVVDNGEAYTYDDEVIKKAEAMGKPGLVEINA 203

Query: 388 KEDSFIFTIESTGAIKASQMLINAIDVLKQKLDAVRLQDEASDMNELTSHLG 543
           KEDSFIFT+E+TGAI A ++++NAI VL+QKLDAVRLQD+  D+ EL +HLG
Sbjct: 204 KEDSFIFTVETTGAITAYELIMNAITVLRQKLDAVRLQDDDGDLGELGAHLG 255


>ref|NP_001062572.1| Os09g0110400 [Oryza sativa Japonica Group]
           gi|46806365|dbj|BAD17541.1| putative DNA-directed RNA
           polymerase II [Oryza sativa Japonica Group]
           gi|113630805|dbj|BAF24486.1| Os09g0110400 [Oryza sativa
           Japonica Group] gi|215692481|dbj|BAG87901.1| unnamed
           protein product [Oryza sativa Japonica Group]
           gi|215697124|dbj|BAG91118.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|215768432|dbj|BAH00661.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|218201657|gb|EEC84084.1| hypothetical protein
           OsI_30378 [Oryza sativa Indica Group]
           gi|222641056|gb|EEE69188.1| hypothetical protein
           OsJ_28369 [Oryza sativa Japonica Group]
          Length = 330

 Score =  246 bits (628), Expect = 4e-63
 Identities = 123/165 (74%), Positives = 143/165 (86%)
 Frame = +1

Query: 46  EQKGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPQIHINXXXXXXXXXX 225
           +Q+GILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP+I IN          
Sbjct: 163 DQRGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIRINEELMETLTLE 222

Query: 226 XKRSWVESSPTKVFGIDPNTQQVVVIDSEAYTYDDEVLKKSEAMGKPGLVEIYAKEDSFI 405
            KR+ VESSPTKVF IDPNTQQVVV D+EAYTYDDEV+KK++AMGKPGL+EI AKEDSFI
Sbjct: 223 EKRNLVESSPTKVFNIDPNTQQVVVEDAEAYTYDDEVIKKADAMGKPGLIEINAKEDSFI 282

Query: 406 FTIESTGAIKASQMLINAIDVLKQKLDAVRLQDEASDMNELTSHL 540
           FT+E+TGAI A ++++NAI VL+QKLDAVRLQD+ +D+ EL +HL
Sbjct: 283 FTVETTGAITAYELIMNAITVLRQKLDAVRLQDDDADLGELGAHL 327


>gb|EMT28290.1| DNA-directed RNA polymerase II subunit RPB3-A [Aegilops tauschii]
          Length = 192

 Score =  245 bits (625), Expect = 8e-63
 Identities = 122/163 (74%), Positives = 138/163 (84%)
 Frame = +1

Query: 52  KGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPQIHINXXXXXXXXXXXK 231
           KGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP I IN           K
Sbjct: 27  KGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEK 86

Query: 232 RSWVESSPTKVFGIDPNTQQVVVIDSEAYTYDDEVLKKSEAMGKPGLVEIYAKEDSFIFT 411
           +SWVESSPTKVF IDP TQQV ++D EAYTYDDEV+KK+EAMGKPGLVEI AKEDSF+FT
Sbjct: 87  QSWVESSPTKVFDIDPVTQQVTIVDPEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFT 146

Query: 412 IESTGAIKASQMLINAIDVLKQKLDAVRLQDEASDMNELTSHL 540
           +E+TGAI A ++++NAI VL+QKLDAVRLQD+  D+ EL +HL
Sbjct: 147 VETTGAITAYELIMNAITVLRQKLDAVRLQDDDGDLGELGAHL 189


>gb|ADE77570.1| unknown [Picea sitchensis]
          Length = 330

 Score =  244 bits (624), Expect = 1e-62
 Identities = 121/172 (70%), Positives = 141/172 (81%)
 Frame = +1

Query: 1   IASAMSADPGGYESPEQKGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP 180
           +A   +AD   +++ EQ+GI+IVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP
Sbjct: 141 VAVDRAADMNVFDASEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP 200

Query: 181 QIHINXXXXXXXXXXXKRSWVESSPTKVFGIDPNTQQVVVIDSEAYTYDDEVLKKSEAMG 360
            IHIN           KR W+ES PTKVF I P+TQQV V+D+EAY+YDDEV+KK+EAMG
Sbjct: 201 DIHINENLMETLTLDEKREWIESCPTKVFDIHPDTQQVFVVDAEAYSYDDEVIKKAEAMG 260

Query: 361 KPGLVEIYAKEDSFIFTIESTGAIKASQMLINAIDVLKQKLDAVRLQDEASD 516
           KPGLV I AK+DSFIFTIESTGA+KASQML+NAID+LKQKL+ VRL  E  +
Sbjct: 261 KPGLVSINAKDDSFIFTIESTGALKASQMLLNAIDILKQKLETVRLSPETEE 312


>ref|XP_006660419.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
           [Oryza brachyantha]
          Length = 330

 Score =  244 bits (622), Expect = 2e-62
 Identities = 123/165 (74%), Positives = 139/165 (84%)
 Frame = +1

Query: 46  EQKGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPQIHINXXXXXXXXXX 225
           +Q+GILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP+I IN          
Sbjct: 163 DQRGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIRINEELMETLTLD 222

Query: 226 XKRSWVESSPTKVFGIDPNTQQVVVIDSEAYTYDDEVLKKSEAMGKPGLVEIYAKEDSFI 405
            KRS VESSPTKVF IDPNTQQVVV D EAYTYDDEV+KK++AMGKPGL+EI AKEDSFI
Sbjct: 223 EKRSLVESSPTKVFNIDPNTQQVVVEDPEAYTYDDEVIKKADAMGKPGLIEINAKEDSFI 282

Query: 406 FTIESTGAIKASQMLINAIDVLKQKLDAVRLQDEASDMNELTSHL 540
           FT+E+TGAI A  +++NAI VL+QKLD VRLQD+  D+ EL +HL
Sbjct: 283 FTVETTGAITAYDLIMNAITVLRQKLDGVRLQDDDGDLGELGAHL 327