BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00004327
         (726 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006853170.1| hypothetical protein AMTR_s00038p00194050 [A...   362   7e-98
gb|EMJ03015.1| hypothetical protein PRUPE_ppa008812mg [Prunus pe...   362   7e-98
gb|EOX98333.1| DNA-directed RNA polymerase family protein [Theob...   361   1e-97
ref|XP_004304034.1| PREDICTED: DNA-directed RNA polymerase II su...   360   3e-97
ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, puta...   359   4e-97
ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerases II, ...   353   4e-95
ref|XP_006422955.1| hypothetical protein CICLE_v10028849mg [Citr...   352   5e-95
gb|ESW29765.1| hypothetical protein PHAVU_002G097400g [Phaseolus...   352   7e-95
ref|XP_004505300.1| PREDICTED: DNA-directed RNA polymerase II su...   351   1e-94
ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerases II, ...   350   2e-94
emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]   348   1e-93
ref|XP_006660419.1| PREDICTED: DNA-directed RNA polymerases II, ...   347   2e-93
ref|XP_001765827.1| predicted protein [Physcomitrella patens] gi...   347   2e-93
ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II su...   347   2e-93
ref|XP_004238992.1| PREDICTED: DNA-directed RNA polymerase II su...   345   9e-93
ref|XP_002883895.1| RBP36A [Arabidopsis lyrata subsp. lyrata] gi...   345   9e-93
ref|NP_001062572.1| Os09g0110400 [Oryza sativa Japonica Group] g...   343   4e-92
ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II su...   342   6e-92
ref|XP_006348609.1| PREDICTED: DNA-directed RNA polymerases II, ...   342   7e-92
ref|NP_179145.1| DNA-directed RNA polymerase II subunit RPB3-A [...   342   7e-92

>ref|XP_006853170.1| hypothetical protein AMTR_s00038p00194050 [Amborella trichopoda]
           gi|548856809|gb|ERN14637.1| hypothetical protein
           AMTR_s00038p00194050 [Amborella trichopoda]
          Length = 324

 Score =  362 bits (929), Expect = 7e-98
 Identities = 181/241 (75%), Positives = 204/241 (84%)
 Frame = +3

Query: 3   YLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEINSSVLNDEFISHRLGLIPLTSDD 182
           YLKFELR+TD S+ANALRR+M+AEVPTIAIDLVEIE NSSVLNDEF++HRLGLIPLTS+ 
Sbjct: 21  YLKFELRETDPSMANALRRIMLAEVPTIAIDLVEIEANSSVLNDEFLAHRLGLIPLTSEK 80

Query: 183 AMSMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTMDVTSADLQSTNPRVCPVNVTIA 362
           AMSMRFSRDCDACDGDGQCE+CSVEF LSV+CDSDQT+DVTSADL S++  V PV+V   
Sbjct: 81  AMSMRFSRDCDACDGDGQCEYCSVEFQLSVKCDSDQTLDVTSADLVSSDIHVIPVDV--- 137

Query: 363 SAMSSDREGCESSEQKGILIVKLHRGQELRLRAIARKGIGKDHAKWSPAATVAFMYEPQI 542
           +    D  G ++SEQ+GI+IVKL RGQELRLRAIARKGIGKDHAKWSP ATV FMYEP+I
Sbjct: 138 AGRGMDSNGFDASEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPGATVTFMYEPEI 197

Query: 543 HINXXXXXXXXXXXKQAWVESSPTKVFVIDPNTQQVEVNDPEAYTYEDEVLKKAEAMGKP 722
           HIN           K+ WVESSPT+VF IDPNT QV V DPEAYTY+DEV+KKAEAMGKP
Sbjct: 198 HINDDLMETLSLDEKREWVESSPTRVFDIDPNTHQVVVVDPEAYTYDDEVIKKAEAMGKP 257

Query: 723 G 725
           G
Sbjct: 258 G 258


>gb|EMJ03015.1| hypothetical protein PRUPE_ppa008812mg [Prunus persica]
          Length = 318

 Score =  362 bits (929), Expect = 7e-98
 Identities = 185/241 (76%), Positives = 200/241 (82%)
 Frame = +3

Query: 3   YLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEINSSVLNDEFISHRLGLIPLTSDD 182
           Y+KFELRDTDAS+ANALRRVMIAEVPT+AIDLVEIEINSSVLNDEFI+HRLGLIPLTSD 
Sbjct: 21  YMKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAHRLGLIPLTSDR 80

Query: 183 AMSMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTMDVTSADLQSTNPRVCPVNVTIA 362
           AMSMRFSRDCDACDGDGQCEFCSVEF L  +C SDQT+DVTS DL S++  V PV+    
Sbjct: 81  AMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLLSSDHTVVPVDF--- 137

Query: 363 SAMSSDREGCESSEQKGILIVKLHRGQELRLRAIARKGIGKDHAKWSPAATVAFMYEPQI 542
               SD  G ESSEQKGI+IVKL RGQELRLRAIARKGIGKDHAKWSPAATV FMYEP I
Sbjct: 138 ----SDSAGMESSEQKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDI 193

Query: 543 HINXXXXXXXXXXXKQAWVESSPTKVFVIDPNTQQVEVNDPEAYTYEDEVLKKAEAMGKP 722
            IN           K+AWVESSPTKVF  DP T++V V DPEAYTY+DEV+KKAEAMGKP
Sbjct: 194 RINEELMDMLTLDEKKAWVESSPTKVFDFDPKTEKVMVVDPEAYTYDDEVIKKAEAMGKP 253

Query: 723 G 725
           G
Sbjct: 254 G 254


>gb|EOX98333.1| DNA-directed RNA polymerase family protein [Theobroma cacao]
          Length = 318

 Score =  361 bits (927), Expect = 1e-97
 Identities = 185/241 (76%), Positives = 203/241 (84%)
 Frame = +3

Query: 3   YLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEINSSVLNDEFISHRLGLIPLTSDD 182
           Y KFELRDTDAS+ANALRRVMIAEVPTIAIDLVEIE+NSSVLNDEFI+HRLGLIPLTS+ 
Sbjct: 21  YAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSER 80

Query: 183 AMSMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTMDVTSADLQSTNPRVCPVNVTIA 362
           AMSMRFSRDCDACDGDGQCEFCSVEF L  +C +DQT+DVTS DL S++  V PV+ T  
Sbjct: 81  AMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDQTLDVTSKDLYSSDHTVVPVDFT-- 138

Query: 363 SAMSSDREGCESSEQKGILIVKLHRGQELRLRAIARKGIGKDHAKWSPAATVAFMYEPQI 542
                D  G +SSEQ+GI+IVKL RGQELRLRAIARKGIGKDHAKWSPAATV FMYEP+I
Sbjct: 139 -----DSAGYDSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEI 193

Query: 543 HINXXXXXXXXXXXKQAWVESSPTKVFVIDPNTQQVEVNDPEAYTYEDEVLKKAEAMGKP 722
           HIN           KQ++VESSPT+VF IDPNTQQV V DPEAYTY+DEVLKKAEAMGKP
Sbjct: 194 HINEDMMETLTLEEKQSFVESSPTRVFDIDPNTQQVVVVDPEAYTYDDEVLKKAEAMGKP 253

Query: 723 G 725
           G
Sbjct: 254 G 254


>ref|XP_004304034.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Fragaria vesca subsp. vesca]
          Length = 318

 Score =  360 bits (923), Expect = 3e-97
 Identities = 184/241 (76%), Positives = 200/241 (82%)
 Frame = +3

Query: 3   YLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEINSSVLNDEFISHRLGLIPLTSDD 182
           YLKFELRDTDAS+ANALRRVMIAEVPT+AIDLVEIEINSSVLNDEFI+HRLGLIPLTSD 
Sbjct: 21  YLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAHRLGLIPLTSDR 80

Query: 183 AMSMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTMDVTSADLQSTNPRVCPVNVTIA 362
           AMSMRFSRDCDACDGDGQCE+CSVEF L  RC SDQT+DVTS +L S++  V PV+    
Sbjct: 81  AMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDVTSKELLSSDHTVVPVDF--- 137

Query: 363 SAMSSDREGCESSEQKGILIVKLHRGQELRLRAIARKGIGKDHAKWSPAATVAFMYEPQI 542
               SD  G E+SEQ+GI+IVKL RGQELRLRAIARKGIGKDHAKWSPAATV FMYEP I
Sbjct: 138 ----SDASGYEASEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDI 193

Query: 543 HINXXXXXXXXXXXKQAWVESSPTKVFVIDPNTQQVEVNDPEAYTYEDEVLKKAEAMGKP 722
            IN           K AWV+SSPTKVF IDPNT +V V DPEAYTY+DEV+KKAEAMGKP
Sbjct: 194 RINEEMMDTLSLEDKAAWVDSSPTKVFEIDPNTGKVVVVDPEAYTYDDEVIKKAEAMGKP 253

Query: 723 G 725
           G
Sbjct: 254 G 254


>ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
           gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase
           II subunit, putative [Ricinus communis]
          Length = 318

 Score =  359 bits (922), Expect = 4e-97
 Identities = 181/241 (75%), Positives = 202/241 (83%)
 Frame = +3

Query: 3   YLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEINSSVLNDEFISHRLGLIPLTSDD 182
           Y KFELRDTDAS+ANALRRVMIAEVPT+AIDLVEIE+NSSVLNDEFI+HRLGLIPLTS+ 
Sbjct: 21  YCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSER 80

Query: 183 AMSMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTMDVTSADLQSTNPRVCPVNVTIA 362
           AMSMRFSRDCDACDGDGQC++CSVEF L  +C +DQT+DVTS DL S++  V PV+    
Sbjct: 81  AMSMRFSRDCDACDGDGQCDYCSVEFHLRAKCITDQTLDVTSKDLYSSDHTVVPVDF--- 137

Query: 363 SAMSSDREGCESSEQKGILIVKLHRGQELRLRAIARKGIGKDHAKWSPAATVAFMYEPQI 542
               SD  G +SSEQ+GI+IVKL RGQELRLRAIARKGIGKDHAKWSPAATV FMYEP I
Sbjct: 138 ----SDSSGYDSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDI 193

Query: 543 HINXXXXXXXXXXXKQAWVESSPTKVFVIDPNTQQVEVNDPEAYTYEDEVLKKAEAMGKP 722
           HIN           KQ+WVESSPTKVF IDPNTQQV V DPEAYTY++EV+KKAE+MGKP
Sbjct: 194 HINEDLMESLSLEEKQSWVESSPTKVFDIDPNTQQVVVVDPEAYTYDEEVIKKAESMGKP 253

Query: 723 G 725
           G
Sbjct: 254 G 254


>ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3
           [Glycine max]
          Length = 319

 Score =  353 bits (905), Expect = 4e-95
 Identities = 180/241 (74%), Positives = 199/241 (82%)
 Frame = +3

Query: 3   YLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEINSSVLNDEFISHRLGLIPLTSDD 182
           Y KFELRDTDASIANALRRVMIAEVPT+AIDLVEIE+NSSVLNDEFI+HRLGLIPLTS+ 
Sbjct: 22  YAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSER 81

Query: 183 AMSMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTMDVTSADLQSTNPRVCPVNVTIA 362
           AMSMRFSRDCDACDGDGQCEFCSVEF L V+C +DQT+DVTS DL S++P V PV+ +  
Sbjct: 82  AMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDVTSKDLYSSDPTVSPVDFSDP 141

Query: 363 SAMSSDREGCESSEQKGILIVKLHRGQELRLRAIARKGIGKDHAKWSPAATVAFMYEPQI 542
           SA  SD         +GI+IVKL RGQEL+LRAIARKGIGKDHAKWSPAATV FMYEP+I
Sbjct: 142 SATDSD-------NNRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPEI 194

Query: 543 HINXXXXXXXXXXXKQAWVESSPTKVFVIDPNTQQVEVNDPEAYTYEDEVLKKAEAMGKP 722
           HIN           K+ WV+SSPT+VF IDP TQQV V D EAYTY+DEVLKKAEAMGKP
Sbjct: 195 HINEDLMETLTLEEKREWVDSSPTRVFEIDPVTQQVMVVDAEAYTYDDEVLKKAEAMGKP 254

Query: 723 G 725
           G
Sbjct: 255 G 255


>ref|XP_006422955.1| hypothetical protein CICLE_v10028849mg [Citrus clementina]
           gi|568867393|ref|XP_006487022.1| PREDICTED: DNA-directed
           RNA polymerases II, IV and V subunit 3-like [Citrus
           sinensis] gi|557524889|gb|ESR36195.1| hypothetical
           protein CICLE_v10028849mg [Citrus clementina]
          Length = 319

 Score =  352 bits (904), Expect = 5e-95
 Identities = 180/241 (74%), Positives = 198/241 (82%)
 Frame = +3

Query: 3   YLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEINSSVLNDEFISHRLGLIPLTSDD 182
           Y KFELRDTDAS+ANALRRVMIAEVPTIAIDLVEIE+NSSVLNDEFI+HRLGLIPLTS+ 
Sbjct: 21  YAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSER 80

Query: 183 AMSMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTMDVTSADLQSTNPRVCPVNVTIA 362
           AMSMRFSRDCDACDGDGQCEFCSVEF L  +C SDQT+DVTS DL S++  V PV+    
Sbjct: 81  AMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDP 140

Query: 363 SAMSSDREGCESSEQKGILIVKLHRGQELRLRAIARKGIGKDHAKWSPAATVAFMYEPQI 542
           +   S      + +Q+GI+IVKL RGQELRLRAIARKGIGKDHAKWSPAATV FMYEP+I
Sbjct: 141 AGYDS------TDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEI 194

Query: 543 HINXXXXXXXXXXXKQAWVESSPTKVFVIDPNTQQVEVNDPEAYTYEDEVLKKAEAMGKP 722
           HIN           KQ+WVESSPTKVF IDPNT QV V D EAYTY+DEV+KKAEAMGKP
Sbjct: 195 HINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKP 254

Query: 723 G 725
           G
Sbjct: 255 G 255


>gb|ESW29765.1| hypothetical protein PHAVU_002G097400g [Phaseolus vulgaris]
          Length = 318

 Score =  352 bits (903), Expect = 7e-95
 Identities = 178/241 (73%), Positives = 200/241 (82%)
 Frame = +3

Query: 3   YLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEINSSVLNDEFISHRLGLIPLTSDD 182
           Y KFELRDTDASIANALRRVMIAEVPTIAIDLVEIE+NSSVLNDEFI+HRLGLIPLTS+ 
Sbjct: 21  YAKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSER 80

Query: 183 AMSMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTMDVTSADLQSTNPRVCPVNVTIA 362
           AMSMRFSRDCDACDGDGQCEFCSVEF L V+C +DQT+DV+S DL S++P V PV+    
Sbjct: 81  AMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDVSSKDLYSSDPSVVPVDF--- 137

Query: 363 SAMSSDREGCESSEQKGILIVKLHRGQELRLRAIARKGIGKDHAKWSPAATVAFMYEPQI 542
               SD    +SSE +G++IVKL RGQELRLRAIARKGIGKDHAKWSPAATV FMYEP+I
Sbjct: 138 ----SDPASTDSSESRGVIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEI 193

Query: 543 HINXXXXXXXXXXXKQAWVESSPTKVFVIDPNTQQVEVNDPEAYTYEDEVLKKAEAMGKP 722
           H+N           K+ WV+SSPT+VF IDP TQQV V D EAY+Y+DEV+KKAEAMGKP
Sbjct: 194 HLNEDLMETLTLEEKREWVDSSPTRVFEIDPVTQQVMVVDSEAYSYDDEVIKKAEAMGKP 253

Query: 723 G 725
           G
Sbjct: 254 G 254


>ref|XP_004505300.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Cicer arietinum]
          Length = 319

 Score =  351 bits (901), Expect = 1e-94
 Identities = 177/241 (73%), Positives = 201/241 (83%)
 Frame = +3

Query: 3   YLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEINSSVLNDEFISHRLGLIPLTSDD 182
           Y+KFELRDTDAS+ANALRRVMI+EVPTIAIDLVEIE+NSSVLNDEFI+HRLGLIPLTS+ 
Sbjct: 21  YMKFELRDTDASVANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSER 80

Query: 183 AMSMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTMDVTSADLQSTNPRVCPVNVTIA 362
           AM+MRFSRDCDACDGDGQCE+CSVEF L V+C +DQT+DVTS DL S++  V PV+    
Sbjct: 81  AMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLDVTSKDLYSSDHTVVPVD---- 136

Query: 363 SAMSSDREGCESSEQKGILIVKLHRGQELRLRAIARKGIGKDHAKWSPAATVAFMYEPQI 542
              S+D    ESS+ +GI+IVKL RGQELRLRAIARKGIGKDHAKWSPAATV FMYEP I
Sbjct: 137 --FSADPSSLESSDGRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDI 194

Query: 543 HINXXXXXXXXXXXKQAWVESSPTKVFVIDPNTQQVEVNDPEAYTYEDEVLKKAEAMGKP 722
           HIN           K+ WV+SSPT+VF IDP TQQV V DPEAY+Y+DEV+KKAEAMGKP
Sbjct: 195 HINEDLMESLTLEEKREWVDSSPTRVFDIDPVTQQVMVVDPEAYSYDDEVIKKAEAMGKP 254

Query: 723 G 725
           G
Sbjct: 255 G 255


>ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
           [Glycine max]
          Length = 320

 Score =  350 bits (899), Expect = 2e-94
 Identities = 179/241 (74%), Positives = 198/241 (82%)
 Frame = +3

Query: 3   YLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEINSSVLNDEFISHRLGLIPLTSDD 182
           Y KFELRDTDASIANALRRVMIAEVPT+AIDLVEIE+NSSVLNDEFI+HRLGLIPLTS+ 
Sbjct: 22  YAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSER 81

Query: 183 AMSMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTMDVTSADLQSTNPRVCPVNVTIA 362
           AMSMRFSRDCDACDGDGQCEFCSVEF L V+C +DQT+DVTS DL S++P V PV+ +  
Sbjct: 82  AMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDVTSKDLYSSDPTVSPVDFSDP 141

Query: 363 SAMSSDREGCESSEQKGILIVKLHRGQELRLRAIARKGIGKDHAKWSPAATVAFMYEPQI 542
           SA  S          +GI+IVKL RGQEL+LRAIARKGIGKDHAKWSPAATV FMYEP+I
Sbjct: 142 SATDS------PDNNRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPEI 195

Query: 543 HINXXXXXXXXXXXKQAWVESSPTKVFVIDPNTQQVEVNDPEAYTYEDEVLKKAEAMGKP 722
           HIN           K+ WV+SSPT+VF IDP TQQV V D EAYTY+DEVLKKAEAMGKP
Sbjct: 196 HINEDLMETLTLEEKREWVDSSPTRVFEIDPVTQQVMVVDAEAYTYDDEVLKKAEAMGKP 255

Query: 723 G 725
           G
Sbjct: 256 G 256


>emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
          Length = 318

 Score =  348 bits (893), Expect = 1e-93
 Identities = 177/241 (73%), Positives = 200/241 (82%)
 Frame = +3

Query: 3   YLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEINSSVLNDEFISHRLGLIPLTSDD 182
           Y KFELR+TDAS+ANALRRVMIAEVPT+AIDLVEIE+NSSVLNDEFI+HRLGLIPLTS+ 
Sbjct: 21  YAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSER 80

Query: 183 AMSMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTMDVTSADLQSTNPRVCPVNVTIA 362
           AMSMRFSRDCDACDGDGQCEFCSVEF L  +C +D+T+DVTS DL S++  V PV+    
Sbjct: 81  AMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDVTSKDLISSDHTVVPVDF--- 137

Query: 363 SAMSSDREGCESSEQKGILIVKLHRGQELRLRAIARKGIGKDHAKWSPAATVAFMYEPQI 542
               SD  G +S+++KGI+IVKL RGQELRLRAIARKGIGKDHAKWSPAATV FMYEP+I
Sbjct: 138 ----SDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEI 193

Query: 543 HINXXXXXXXXXXXKQAWVESSPTKVFVIDPNTQQVEVNDPEAYTYEDEVLKKAEAMGKP 722
           HIN           K +WVESSPTKVF ID ++QQV V D EAYTY+DEVLKKAEAMGKP
Sbjct: 194 HINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTYDDEVLKKAEAMGKP 253

Query: 723 G 725
           G
Sbjct: 254 G 254


>ref|XP_006660419.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
           [Oryza brachyantha]
          Length = 330

 Score =  347 bits (890), Expect = 2e-93
 Identities = 179/246 (72%), Positives = 202/246 (82%), Gaps = 5/246 (2%)
 Frame = +3

Query: 3   YLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEINSSVLNDEFISHRLGLIPLTSDD 182
           Y KFELRDTDAS+ANALRRVMIAEVPT+AIDLVEIE+NSSVLNDEFI+HRLGLIPLTS  
Sbjct: 25  YAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSAA 84

Query: 183 AMSMRFSRDCDACDGDGQCEFCSVEFFLSVRC-DSDQTMDVTSADLQSTNPRVCPVNVTI 359
           AM MRFSRDCDACDGDG CE+CSVEF L+ R  DSDQT++VTS DL+ST+P+VCPV+   
Sbjct: 85  AMGMRFSRDCDACDGDGSCEYCSVEFHLAARATDSDQTLEVTSNDLRSTDPKVCPVDQAR 144

Query: 360 ASAM----SSDREGCESSEQKGILIVKLHRGQELRLRAIARKGIGKDHAKWSPAATVAFM 527
           A       S   +   +++Q+GILIVKL RGQELRLRAIARKGIGKDHAKWSPAATV FM
Sbjct: 145 AYQHALGGSEPFDTAAAADQRGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 204

Query: 528 YEPQIHINXXXXXXXXXXXKQAWVESSPTKVFVIDPNTQQVEVNDPEAYTYEDEVLKKAE 707
           YEP+I IN           K++ VESSPTKVF IDPNTQQV V DPEAYTY+DEV+KKA+
Sbjct: 205 YEPEIRINEELMETLTLDEKRSLVESSPTKVFNIDPNTQQVVVEDPEAYTYDDEVIKKAD 264

Query: 708 AMGKPG 725
           AMGKPG
Sbjct: 265 AMGKPG 270


>ref|XP_001765827.1| predicted protein [Physcomitrella patens]
           gi|162683004|gb|EDQ69418.1| predicted protein
           [Physcomitrella patens]
          Length = 324

 Score =  347 bits (890), Expect = 2e-93
 Identities = 171/240 (71%), Positives = 200/240 (83%)
 Frame = +3

Query: 6   LKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEINSSVLNDEFISHRLGLIPLTSDDA 185
           LKFELRDTDASIANALRR+MIAEVPT+AIDLVEIE NSSVLNDEF++HRLGLIP+ SD A
Sbjct: 22  LKFELRDTDASIANALRRIMIAEVPTLAIDLVEIESNSSVLNDEFLAHRLGLIPIVSDRA 81

Query: 186 MSMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTMDVTSADLQSTNPRVCPVNVTIAS 365
           M MR SRDCDACDGDG+CE+CS+EF LSV+C  DQT+DVTS DL S++P + PV+   A+
Sbjct: 82  MEMRLSRDCDACDGDGRCEYCSIEFHLSVKCTGDQTLDVTSLDLVSSDPSIIPVD---AA 138

Query: 366 AMSSDREGCESSEQKGILIVKLHRGQELRLRAIARKGIGKDHAKWSPAATVAFMYEPQIH 545
             ++D  G ES++ +GILIVKL +GQEL+LRAIARKGIGKDHAKWSPAATV F YEP+IH
Sbjct: 139 GRAADMGGFESNDTRGILIVKLRKGQELKLRAIARKGIGKDHAKWSPAATVTFQYEPEIH 198

Query: 546 INXXXXXXXXXXXKQAWVESSPTKVFVIDPNTQQVEVNDPEAYTYEDEVLKKAEAMGKPG 725
           IN           KQ W++SSPTKVF +DP +QQV V DPEAYTY++EVLKKAEAMGKPG
Sbjct: 199 INEALMETLTLEEKQEWIDSSPTKVFELDPVSQQVVVVDPEAYTYDEEVLKKAEAMGKPG 258


>ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A [Vitis
           vinifera]
          Length = 318

 Score =  347 bits (890), Expect = 2e-93
 Identities = 176/241 (73%), Positives = 200/241 (82%)
 Frame = +3

Query: 3   YLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEINSSVLNDEFISHRLGLIPLTSDD 182
           Y KFELR+TDAS+ANALRRVMIAEVPT+AIDLVEIE+NSSVLNDEFI+HRLGLIPLTS+ 
Sbjct: 21  YAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSER 80

Query: 183 AMSMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTMDVTSADLQSTNPRVCPVNVTIA 362
           AM+MRFSRDCDACDGDGQCEFCSVEF L  +C +D+T+DVTS DL S++  V PV+    
Sbjct: 81  AMAMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDVTSKDLISSDHTVVPVDF--- 137

Query: 363 SAMSSDREGCESSEQKGILIVKLHRGQELRLRAIARKGIGKDHAKWSPAATVAFMYEPQI 542
               SD  G +S+++KGI+IVKL RGQELRLRAIARKGIGKDHAKWSPAATV FMYEP+I
Sbjct: 138 ----SDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEI 193

Query: 543 HINXXXXXXXXXXXKQAWVESSPTKVFVIDPNTQQVEVNDPEAYTYEDEVLKKAEAMGKP 722
           HIN           K +WVESSPTKVF ID ++QQV V D EAYTY+DEVLKKAEAMGKP
Sbjct: 194 HINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTYDDEVLKKAEAMGKP 253

Query: 723 G 725
           G
Sbjct: 254 G 254


>ref|XP_004238992.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Solanum lycopersicum]
          Length = 319

 Score =  345 bits (885), Expect = 9e-93
 Identities = 177/241 (73%), Positives = 200/241 (82%)
 Frame = +3

Query: 3   YLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEINSSVLNDEFISHRLGLIPLTSDD 182
           ++KFELRDTDASIANALRR+MIAEVPTIAIDLVEIE+NSSVLNDEFISHRLGL+PLTS+ 
Sbjct: 21  FMKFELRDTDASIANALRRIMIAEVPTIAIDLVEIEVNSSVLNDEFISHRLGLVPLTSER 80

Query: 183 AMSMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTMDVTSADLQSTNPRVCPVNVTIA 362
           AMSMRFSRDCDACDGDGQCE+CSVEF+L V+C SDQT+DVTS DL S++  V PV+ + A
Sbjct: 81  AMSMRFSRDCDACDGDGQCEYCSVEFYLRVKCLSDQTLDVTSKDLLSSDHTVVPVDYSDA 140

Query: 363 SAMSSDREGCESSEQKGILIVKLHRGQELRLRAIARKGIGKDHAKWSPAATVAFMYEPQI 542
           S+        +++  KGI+IVKL RGQELRLRAIARKGIGKDHAKWSPAATV FMYEP+I
Sbjct: 141 SS------SFDNTPNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEI 194

Query: 543 HINXXXXXXXXXXXKQAWVESSPTKVFVIDPNTQQVEVNDPEAYTYEDEVLKKAEAMGKP 722
           +IN           K   VESSPTKVF IDP  +QV V DPEAYTY+DEVLKKAEAMGKP
Sbjct: 195 YINEDMMESLTLEEKTELVESSPTKVFGIDPENKQVIVVDPEAYTYDDEVLKKAEAMGKP 254

Query: 723 G 725
           G
Sbjct: 255 G 255


>ref|XP_002883895.1| RBP36A [Arabidopsis lyrata subsp. lyrata]
           gi|297329735|gb|EFH60154.1| RBP36A [Arabidopsis lyrata
           subsp. lyrata]
          Length = 319

 Score =  345 bits (885), Expect = 9e-93
 Identities = 178/241 (73%), Positives = 199/241 (82%)
 Frame = +3

Query: 3   YLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEINSSVLNDEFISHRLGLIPLTSDD 182
           Y KFELR+TD S+ANALRRVMI+EVPT+AIDLVEIE+NSSVLNDEFI+HRLGLIPLTS+ 
Sbjct: 21  YAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSER 80

Query: 183 AMSMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTMDVTSADLQSTNPRVCPVNVTIA 362
           AMSMRFSRDCDACDGDGQCEFCSVEF LS +C +DQT+DVTS DL S +P V PV+ TI 
Sbjct: 81  AMSMRFSRDCDACDGDGQCEFCSVEFRLSAKCVTDQTLDVTSRDLYSADPTVTPVDFTID 140

Query: 363 SAMSSDREGCESSEQKGILIVKLHRGQELRLRAIARKGIGKDHAKWSPAATVAFMYEPQI 542
           S+ S      +SSEQKGI+IVKL RGQEL+LRAIARKGIGKDHAKWSPAATV FMYEP I
Sbjct: 141 SSAS------DSSEQKGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPDI 194

Query: 543 HINXXXXXXXXXXXKQAWVESSPTKVFVIDPNTQQVEVNDPEAYTYEDEVLKKAEAMGKP 722
            IN           K   +ESSPTKVF IDP T+QV V DPEAYTY++EV+KKAEAMGKP
Sbjct: 195 IINEDMMDTLSDEEKIDLIESSPTKVFGIDPVTRQVVVVDPEAYTYDEEVIKKAEAMGKP 254

Query: 723 G 725
           G
Sbjct: 255 G 255


>ref|NP_001062572.1| Os09g0110400 [Oryza sativa Japonica Group]
           gi|46806365|dbj|BAD17541.1| putative DNA-directed RNA
           polymerase II [Oryza sativa Japonica Group]
           gi|113630805|dbj|BAF24486.1| Os09g0110400 [Oryza sativa
           Japonica Group] gi|215692481|dbj|BAG87901.1| unnamed
           protein product [Oryza sativa Japonica Group]
           gi|215697124|dbj|BAG91118.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|215768432|dbj|BAH00661.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|218201657|gb|EEC84084.1| hypothetical protein
           OsI_30378 [Oryza sativa Indica Group]
           gi|222641056|gb|EEE69188.1| hypothetical protein
           OsJ_28369 [Oryza sativa Japonica Group]
          Length = 330

 Score =  343 bits (879), Expect = 4e-92
 Identities = 180/248 (72%), Positives = 202/248 (81%), Gaps = 7/248 (2%)
 Frame = +3

Query: 3   YLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEINSSVLNDEFISHRLGLIPLTSDD 182
           Y KFELRDTDAS+ANALRRVMIAEVPT+AIDLVEIE+NSSVLNDEFI+HRLGLIPLTS  
Sbjct: 25  YAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSAA 84

Query: 183 AMSMRFSRDCDACDGDGQCEFCSVEFFLSVRC-DSDQTMDVTSADLQSTNPRVCPVNVTI 359
           AM+MRFSRDCDACDGDG CE+CSVEF L+ R  DSDQT++VTS DL+ST+P+VCPV+   
Sbjct: 85  AMAMRFSRDCDACDGDGSCEYCSVEFHLAARATDSDQTLEVTSNDLRSTDPKVCPVDQ-- 142

Query: 360 ASAMSSDREGCE------SSEQKGILIVKLHRGQELRLRAIARKGIGKDHAKWSPAATVA 521
           A A      G E      +++Q+GILIVKL RGQELRLRAIARKGIGKDHAKWSPAATV 
Sbjct: 143 ARAYQHALGGTEPFDTAAAADQRGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVT 202

Query: 522 FMYEPQIHINXXXXXXXXXXXKQAWVESSPTKVFVIDPNTQQVEVNDPEAYTYEDEVLKK 701
           FMYEP+I IN           K+  VESSPTKVF IDPNTQQV V D EAYTY+DEV+KK
Sbjct: 203 FMYEPEIRINEELMETLTLEEKRNLVESSPTKVFNIDPNTQQVVVEDAEAYTYDDEVIKK 262

Query: 702 AEAMGKPG 725
           A+AMGKPG
Sbjct: 263 ADAMGKPG 270


>ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Cucumis sativus]
          Length = 320

 Score =  342 bits (878), Expect = 6e-92
 Identities = 175/241 (72%), Positives = 196/241 (81%)
 Frame = +3

Query: 3   YLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEINSSVLNDEFISHRLGLIPLTSDD 182
           Y KFELRDTDAS+ANALRRVMIAEVPTIAIDLVEIE+NSSVLNDEFI+HRLGLIPLTS+ 
Sbjct: 21  YAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSER 80

Query: 183 AMSMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTMDVTSADLQSTNPRVCPVNVTIA 362
           AMSMRFSRDCDACDGDGQCEFCSVEF L  +C SDQT+DVTS DL S++  V PV+ + +
Sbjct: 81  AMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDS 140

Query: 363 SAMSSDREGCESSEQKGILIVKLHRGQELRLRAIARKGIGKDHAKWSPAATVAFMYEPQI 542
           +A +      E+ + KGI+IVKL RGQELRLRAIARKGIGKDHAKWSPAATV FMYEP I
Sbjct: 141 AAATG-----EALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSI 195

Query: 543 HINXXXXXXXXXXXKQAWVESSPTKVFVIDPNTQQVEVNDPEAYTYEDEVLKKAEAMGKP 722
           HIN           K+ WVES PT+VF +D  T QV V DPEAYTY+DEV+KKAEAMGK 
Sbjct: 196 HINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAYTYDDEVIKKAEAMGKA 255

Query: 723 G 725
           G
Sbjct: 256 G 256


>ref|XP_006348609.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
           [Solanum tuberosum]
          Length = 319

 Score =  342 bits (877), Expect = 7e-92
 Identities = 175/241 (72%), Positives = 199/241 (82%)
 Frame = +3

Query: 3   YLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEINSSVLNDEFISHRLGLIPLTSDD 182
           ++KFELR+TDASIANALRR+MIAEVPTIAIDLVEIE+NSSVLNDEFISHRLGL+PLTS+ 
Sbjct: 21  FMKFELRETDASIANALRRIMIAEVPTIAIDLVEIEVNSSVLNDEFISHRLGLVPLTSER 80

Query: 183 AMSMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTMDVTSADLQSTNPRVCPVNVTIA 362
           AMSMRFSRDCDACDGDGQCE+CSVEF+L V+C SDQT+DVTS DL S++  V PV+ +  
Sbjct: 81  AMSMRFSRDCDACDGDGQCEYCSVEFYLRVKCLSDQTLDVTSKDLLSSDHTVVPVDYSDT 140

Query: 363 SAMSSDREGCESSEQKGILIVKLHRGQELRLRAIARKGIGKDHAKWSPAATVAFMYEPQI 542
           S+        +++  KGI+IVKL RGQELRLRAIARKGIGKDHAKWSPAATV FMYEP+I
Sbjct: 141 SS------SFDNTPNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEI 194

Query: 543 HINXXXXXXXXXXXKQAWVESSPTKVFVIDPNTQQVEVNDPEAYTYEDEVLKKAEAMGKP 722
           +IN           K   VESSPTKVF IDP  +QV V DPEAYTY+DEVLKKAEAMGKP
Sbjct: 195 YINEDMMESLTLEEKTELVESSPTKVFGIDPENKQVIVVDPEAYTYDDEVLKKAEAMGKP 254

Query: 723 G 725
           G
Sbjct: 255 G 255


>ref|NP_179145.1| DNA-directed RNA polymerase II subunit RPB3-A [Arabidopsis
           thaliana] gi|11134646|sp|Q39211.1|NRPB3_ARATH RecName:
           Full=DNA-directed RNA polymerases II, IV and V subunit
           3; AltName: Full=DNA-directed RNA polymerase II 36 kDa
           polypeptide A; AltName: Full=DNA-directed RNA polymerase
           II subunit RPB3-A; Short=RNA polymerase II subunit 3-A;
           Short=RNA polymerase II subunit B3-A
           gi|514318|gb|AAB03741.1| RNA polymerase II third largest
           subunit [Arabidopsis thaliana] gi|4544370|gb|AAD22281.1|
           DNA-directed RNA polymerase II, third largest subunit
           [Arabidopsis thaliana] gi|17381018|gb|AAL36321.1|
           putative DNA-directed RNA polymerase II third largest
           subunit [Arabidopsis thaliana]
           gi|20465883|gb|AAM20046.1| putative DNA-directed RNA
           polymerase II [Arabidopsis thaliana]
           gi|330251306|gb|AEC06400.1| DNA-directed RNA polymerase
           II subunit RPB3-A [Arabidopsis thaliana]
          Length = 319

 Score =  342 bits (877), Expect = 7e-92
 Identities = 176/241 (73%), Positives = 199/241 (82%)
 Frame = +3

Query: 3   YLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEINSSVLNDEFISHRLGLIPLTSDD 182
           Y KFELR+TD S+ANALRRVMI+EVPT+AIDLVEIE+NSSVLNDEFI+HRLGLIPLTS+ 
Sbjct: 21  YAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSER 80

Query: 183 AMSMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTMDVTSADLQSTNPRVCPVNVTIA 362
           AMSMRFSRDCDACDGDGQCEFCSVEF LS +C +DQT+DVTS DL S +P V PV+ TI 
Sbjct: 81  AMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDVTSRDLYSADPTVTPVDFTID 140

Query: 363 SAMSSDREGCESSEQKGILIVKLHRGQELRLRAIARKGIGKDHAKWSPAATVAFMYEPQI 542
           S++S      +SSE KGI+IVKL RGQEL+LRAIARKGIGKDHAKWSPAATV FMYEP I
Sbjct: 141 SSVS------DSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPDI 194

Query: 543 HINXXXXXXXXXXXKQAWVESSPTKVFVIDPNTQQVEVNDPEAYTYEDEVLKKAEAMGKP 722
            IN           K   +ESSPTKVF +DP T+QV V DPEAYTY++EV+KKAEAMGKP
Sbjct: 195 IINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYTYDEEVIKKAEAMGKP 254

Query: 723 G 725
           G
Sbjct: 255 G 255