BLASTX nr result
ID: Zingiber23_contig00003735
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00003735
(577 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_001047900.1| Os02g0711100 [Oryza sativa Japonica Group] g... 44 3e-09
ref|XP_006482140.1| PREDICTED: pentatricopeptide repeat-containi... 44 2e-08
dbj|BAJ94382.1| predicted protein [Hordeum vulgare subsp. vulgare] 44 3e-08
ref|XP_002301697.1| predicted protein [Populus trichocarpa] 44 6e-08
ref|XP_006383312.1| hypothetical protein POPTR_0005s14380g, part... 44 6e-08
ref|XP_003570219.1| PREDICTED: pentatricopeptide repeat-containi... 44 7e-08
ref|XP_006430632.1| hypothetical protein CICLE_v10011615mg [Citr... 42 8e-08
ref|XP_004140363.1| PREDICTED: pentatricopeptide repeat-containi... 44 1e-07
ref|XP_004173996.1| PREDICTED: pentatricopeptide repeat-containi... 44 1e-07
ref|XP_004307088.1| PREDICTED: pentatricopeptide repeat-containi... 41 3e-07
ref|XP_002532468.1| pentatricopeptide repeat-containing protein,... 41 6e-07
gb|EMJ16546.1| hypothetical protein PRUPE_ppa005397mg [Prunus pe... 42 1e-06
gb|EOY03976.1| Tetratricopeptide repeat-like superfamily protein... 41 1e-06
gb|AFW73075.1| hypothetical protein ZEAMMB73_887223 [Zea mays] 45 2e-06
ref|NP_001144625.1| uncharacterized protein LOC100277643 [Zea ma... 45 2e-06
gb|ACR36806.1| unknown [Zea mays] 45 2e-06
emb|CBI33534.3| unnamed protein product [Vitis vinifera] 40 4e-06
ref|XP_002272930.1| PREDICTED: pentatricopeptide repeat-containi... 40 4e-06
gb|EAZ24364.1| hypothetical protein OsJ_08117 [Oryza sativa Japo... 44 4e-06
>ref|NP_001047900.1| Os02g0711100 [Oryza sativa Japonica Group]
gi|41052650|dbj|BAD07498.1| pentatricopeptide (PPR)
repeat-containing protein-like [Oryza sativa Japonica
Group] gi|41052866|dbj|BAD07780.1| pentatricopeptide
(PPR) repeat-containing protein-like [Oryza sativa
Japonica Group] gi|113537431|dbj|BAF09814.1|
Os02g0711100 [Oryza sativa Japonica Group]
gi|125540864|gb|EAY87259.1| hypothetical protein
OsI_08660 [Oryza sativa Indica Group]
gi|215687282|dbj|BAG91847.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 489
Score = 44.3 bits (103), Expect(2) = 3e-09
Identities = 19/36 (52%), Positives = 23/36 (63%)
Frame = -2
Query: 474 RCCRRFFRWGRSLYLSDQHSPYAWSLMFDLLSKNPL 367
R FFRW +L QHSPY+W+L+ DLL KN L
Sbjct: 86 RAAVAFFRWAGHRHLRHQHSPYSWNLVVDLLGKNRL 121
Score = 42.7 bits (99), Expect(2) = 3e-09
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -3
Query: 575 SSTPSSVDRALDNTGVRVSSQDVEVVLKFSYSQPGVVVA 459
+S+ VD ALD+ VRV+S DVE VL+FSY+ P VA
Sbjct: 52 ASSAPDVDAALDDADVRVTSSDVEQVLRFSYAHPRAAVA 90
>ref|XP_006482140.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Citrus sinensis]
Length = 482
Score = 43.5 bits (101), Expect(2) = 2e-08
Identities = 19/32 (59%), Positives = 25/32 (78%)
Frame = -2
Query: 462 RFFRWGRSLYLSDQHSPYAWSLMFDLLSKNPL 367
+FFRW + L+D+HSPYAW+L+ DLL KN L
Sbjct: 86 KFFRWS-AYQLNDKHSPYAWNLVVDLLGKNCL 116
Score = 41.2 bits (95), Expect(2) = 2e-08
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Frame = -3
Query: 575 SSTPS-SVDRALDNTGVRVSSQDVEVVLKFSYSQPGVVV 462
++TPS +V+ LD T +RVS + VE VLKFSYS PG V
Sbjct: 47 ANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAV 85
>dbj|BAJ94382.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 488
Score = 44.3 bits (103), Expect(2) = 3e-08
Identities = 18/31 (58%), Positives = 22/31 (70%)
Frame = -2
Query: 459 FFRWGRSLYLSDQHSPYAWSLMFDLLSKNPL 367
FFRW +L QHSPY+W+L+ DLL KN L
Sbjct: 90 FFRWAGHRHLHHQHSPYSWNLVIDLLGKNRL 120
Score = 39.7 bits (91), Expect(2) = 3e-08
Identities = 18/34 (52%), Positives = 26/34 (76%)
Frame = -3
Query: 575 SSTPSSVDRALDNTGVRVSSQDVEVVLKFSYSQP 474
+S+ S V+ ALD+ VRV++ DVE VL+FSY+ P
Sbjct: 51 ASSASDVEAALDDADVRVTTSDVEQVLRFSYAHP 84
>ref|XP_002301697.1| predicted protein [Populus trichocarpa]
Length = 499
Score = 43.9 bits (102), Expect(2) = 6e-08
Identities = 18/32 (56%), Positives = 25/32 (78%)
Frame = -2
Query: 462 RFFRWGRSLYLSDQHSPYAWSLMFDLLSKNPL 367
+FFRW L L+D+HSPY+W+L+ DLL KN +
Sbjct: 99 KFFRWA-GLQLNDKHSPYSWNLVVDLLGKNSM 129
Score = 38.9 bits (89), Expect(2) = 6e-08
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = -3
Query: 575 SSTPS-SVDRALDNTGVRVSSQDVEVVLKFSYSQPGVVV 462
++TPS +V+ LD T +RV DVE VLK SYS PG V
Sbjct: 60 ANTPSHNVESVLDATVIRVKQTDVEQVLKLSYSSPGSAV 98
>ref|XP_006383312.1| hypothetical protein POPTR_0005s14380g, partial [Populus
trichocarpa] gi|550338919|gb|ERP61109.1| hypothetical
protein POPTR_0005s14380g, partial [Populus trichocarpa]
Length = 497
Score = 43.9 bits (102), Expect(2) = 6e-08
Identities = 18/32 (56%), Positives = 25/32 (78%)
Frame = -2
Query: 462 RFFRWGRSLYLSDQHSPYAWSLMFDLLSKNPL 367
+FFRW L L+D+HSPY+W+L+ DLL KN +
Sbjct: 99 KFFRWA-GLQLNDKHSPYSWNLVVDLLGKNSM 129
Score = 38.9 bits (89), Expect(2) = 6e-08
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = -3
Query: 575 SSTPS-SVDRALDNTGVRVSSQDVEVVLKFSYSQPGVVV 462
++TPS +V+ LD T +RV DVE VLK SYS PG V
Sbjct: 60 ANTPSHNVESVLDATVIRVKQTDVEQVLKLSYSSPGSAV 98
>ref|XP_003570219.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Brachypodium distachyon]
Length = 488
Score = 44.3 bits (103), Expect(2) = 7e-08
Identities = 18/31 (58%), Positives = 22/31 (70%)
Frame = -2
Query: 459 FFRWGRSLYLSDQHSPYAWSLMFDLLSKNPL 367
FFRW +L QHSPY+W+L+ DLL KN L
Sbjct: 90 FFRWAGHRHLRHQHSPYSWNLVIDLLGKNRL 120
Score = 38.1 bits (87), Expect(2) = 7e-08
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = -3
Query: 575 SSTPSSVDRALDNTGVRVSSQDVEVVLKFSYSQP 474
+S + V+ ALD+ VRV++ DVE VL+FSY+ P
Sbjct: 51 ASPATDVEAALDDAAVRVTTSDVEQVLRFSYAHP 84
>ref|XP_006430632.1| hypothetical protein CICLE_v10011615mg [Citrus clementina]
gi|557532689|gb|ESR43872.1| hypothetical protein
CICLE_v10011615mg [Citrus clementina]
Length = 482
Score = 42.4 bits (98), Expect(2) = 8e-08
Identities = 18/32 (56%), Positives = 25/32 (78%)
Frame = -2
Query: 462 RFFRWGRSLYLSDQHSPYAWSLMFDLLSKNPL 367
+FFRW + L+D+HSPYAW+L+ DLL +N L
Sbjct: 86 KFFRWS-AYQLNDKHSPYAWNLVVDLLGRNCL 116
Score = 40.0 bits (92), Expect(2) = 8e-08
Identities = 21/39 (53%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Frame = -3
Query: 575 SSTPS-SVDRALDNTGVRVSSQDVEVVLKFSYSQPGVVV 462
++TPS +V+ LD T +RVS + VE VL+FSYS PG V
Sbjct: 47 ANTPSPTVEDVLDKTLIRVSQETVEQVLRFSYSHPGPAV 85
>ref|XP_004140363.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Cucumis sativus]
Length = 519
Score = 43.9 bits (102), Expect(2) = 1e-07
Identities = 20/31 (64%), Positives = 25/31 (80%), Gaps = 1/31 (3%)
Frame = -2
Query: 462 RFFRW-GRSLYLSDQHSPYAWSLMFDLLSKN 373
+FFRW GR L +DQHSPYAW+L+ D+L KN
Sbjct: 121 KFFRWSGRKL--NDQHSPYAWNLIIDMLGKN 149
Score = 38.1 bits (87), Expect(2) = 1e-07
Identities = 18/36 (50%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = -3
Query: 575 SSTPS-SVDRALDNTGVRVSSQDVEVVLKFSYSQPG 471
+++PS V++AL++TG+ + QDVE VLK SY PG
Sbjct: 82 ANSPSLDVEKALEDTGIHATQQDVEEVLKLSYRFPG 117
>ref|XP_004173996.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like, partial [Cucumis sativus]
Length = 391
Score = 43.9 bits (102), Expect(2) = 1e-07
Identities = 20/31 (64%), Positives = 25/31 (80%), Gaps = 1/31 (3%)
Frame = -2
Query: 462 RFFRW-GRSLYLSDQHSPYAWSLMFDLLSKN 373
+FFRW GR L +DQHSPYAW+L+ D+L KN
Sbjct: 121 KFFRWSGRKL--NDQHSPYAWNLIIDMLGKN 149
Score = 38.1 bits (87), Expect(2) = 1e-07
Identities = 18/36 (50%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = -3
Query: 575 SSTPS-SVDRALDNTGVRVSSQDVEVVLKFSYSQPG 471
+++PS V++AL++TG+ + QDVE VLK SY PG
Sbjct: 82 ANSPSLDVEKALEDTGIHATQQDVEEVLKLSYRFPG 117
>ref|XP_004307088.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Fragaria vesca subsp. vesca]
Length = 491
Score = 40.8 bits (94), Expect(2) = 3e-07
Identities = 19/31 (61%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Frame = -2
Query: 462 RFFRW-GRSLYLSDQHSPYAWSLMFDLLSKN 373
+FFRW GR L ++ HSPYAW+L+ DLL KN
Sbjct: 94 KFFRWSGRQL--NEHHSPYAWNLVVDLLGKN 122
Score = 39.7 bits (91), Expect(2) = 3e-07
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = -3
Query: 560 SVDRALDNTGVRVSSQDVEVVLKFSYSQPG 471
SV+ L++TG+RVS DVE VLK SY+ PG
Sbjct: 61 SVEETLNDTGIRVSQHDVEEVLKLSYAFPG 90
>ref|XP_002532468.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223527826|gb|EEF29924.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 510
Score = 41.2 bits (95), Expect(2) = 6e-07
Identities = 18/32 (56%), Positives = 22/32 (68%)
Frame = -2
Query: 462 RFFRWGRSLYLSDQHSPYAWSLMFDLLSKNPL 367
+FFRW L D HSPY+W+L+ DLL KN L
Sbjct: 114 KFFRWA-GFRLQDNHSPYSWNLVVDLLGKNCL 144
Score = 38.1 bits (87), Expect(2) = 6e-07
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = -3
Query: 563 SSVDRALDNTGVRVSSQDVEVVLKFSYSQPGVVV 462
S+V+ LD TG+ VS DVE V+K SYS PG V
Sbjct: 80 STVETILDETGLYVSQYDVEQVIKLSYSFPGPAV 113
>gb|EMJ16546.1| hypothetical protein PRUPE_ppa005397mg [Prunus persica]
Length = 463
Score = 42.4 bits (98), Expect(2) = 1e-06
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = -2
Query: 462 RFFRWGRSLYLSDQHSPYAWSLMFDLLSKN 373
+FFRW +L+D HSPYAW+L+ DLL KN
Sbjct: 67 KFFRWAGH-HLNDYHSPYAWNLVVDLLGKN 95
Score = 36.2 bits (82), Expect(2) = 1e-06
Identities = 18/33 (54%), Positives = 22/33 (66%)
Frame = -3
Query: 560 SVDRALDNTGVRVSSQDVEVVLKFSYSQPGVVV 462
SV+ L T VRV+ +DVE VLK SY+ PG V
Sbjct: 34 SVEERLAETSVRVTQEDVEEVLKLSYAFPGPAV 66
>gb|EOY03976.1| Tetratricopeptide repeat-like superfamily protein, putative
[Theobroma cacao]
Length = 485
Score = 40.8 bits (94), Expect(2) = 1e-06
Identities = 18/32 (56%), Positives = 22/32 (68%)
Frame = -2
Query: 462 RFFRWGRSLYLSDQHSPYAWSLMFDLLSKNPL 367
+FFRW L QHSPY+W+L+ DLL KN L
Sbjct: 89 KFFRWS-GYQLQHQHSPYSWNLVVDLLGKNGL 119
Score = 37.4 bits (85), Expect(2) = 1e-06
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = -3
Query: 575 SSTPSS-VDRALDNTGVRVSSQDVEVVLKFSYSQPGVVV 462
S+TPSS V+ L+ G+RV+ DVE VLK SYS P V
Sbjct: 50 STTPSSTVEALLEGAGLRVTQPDVENVLKLSYSFPSQAV 88
>gb|AFW73075.1| hypothetical protein ZEAMMB73_887223 [Zea mays]
Length = 492
Score = 45.4 bits (106), Expect(2) = 2e-06
Identities = 18/36 (50%), Positives = 23/36 (63%)
Frame = -2
Query: 474 RCCRRFFRWGRSLYLSDQHSPYAWSLMFDLLSKNPL 367
R FFRW YL +HSPY+W+L+ D+L KN L
Sbjct: 89 RAAAAFFRWAGYRYLGHEHSPYSWNLLVDILGKNRL 124
Score = 32.3 bits (72), Expect(2) = 2e-06
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -3
Query: 545 LDNTGVRVSSQDVEVVLKFSYSQPGVVVA 459
LD +RVS DVE VL+FSY+ P A
Sbjct: 65 LDKADIRVSIADVEQVLRFSYAHPRAAAA 93
>ref|NP_001144625.1| uncharacterized protein LOC100277643 [Zea mays]
gi|195644788|gb|ACG41862.1| hypothetical protein [Zea
mays]
Length = 492
Score = 45.4 bits (106), Expect(2) = 2e-06
Identities = 18/36 (50%), Positives = 23/36 (63%)
Frame = -2
Query: 474 RCCRRFFRWGRSLYLSDQHSPYAWSLMFDLLSKNPL 367
R FFRW YL +HSPY+W+L+ D+L KN L
Sbjct: 89 RAAAAFFRWAGYRYLGHEHSPYSWNLLVDILGKNRL 124
Score = 32.3 bits (72), Expect(2) = 2e-06
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -3
Query: 545 LDNTGVRVSSQDVEVVLKFSYSQPGVVVA 459
LD +RVS DVE VL+FSY+ P A
Sbjct: 65 LDKADIRVSIADVEQVLRFSYAHPRAAAA 93
>gb|ACR36806.1| unknown [Zea mays]
Length = 369
Score = 45.4 bits (106), Expect(2) = 2e-06
Identities = 18/36 (50%), Positives = 23/36 (63%)
Frame = -2
Query: 474 RCCRRFFRWGRSLYLSDQHSPYAWSLMFDLLSKNPL 367
R FFRW YL +HSPY+W+L+ D+L KN L
Sbjct: 89 RAAAAFFRWAGYRYLGHEHSPYSWNLLVDILGKNRL 124
Score = 32.3 bits (72), Expect(2) = 2e-06
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -3
Query: 545 LDNTGVRVSSQDVEVVLKFSYSQPGVVVA 459
LD +RVS DVE VL+FSY+ P A
Sbjct: 65 LDKADIRVSIADVEQVLRFSYAHPRAAAA 93
>emb|CBI33534.3| unnamed protein product [Vitis vinifera]
Length = 506
Score = 39.7 bits (91), Expect(2) = 4e-06
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = -2
Query: 462 RFFRWGRSLYLSDQHSPYAWSLMFDLLSKN 373
+FFRW L+D HSPY+W+L+ D+L KN
Sbjct: 110 KFFRWSGH-QLNDNHSPYSWNLVVDMLGKN 138
Score = 37.0 bits (84), Expect(2) = 4e-06
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = -3
Query: 575 SSTPSS-VDRALDNTGVRVSSQDVEVVLKFSYSQPGVVV 462
++TPSS V+ L +T +RVS +DVE LK SY PG V
Sbjct: 71 ANTPSSTVEEVLHDTAIRVSPEDVEDSLKLSYGFPGSAV 109
>ref|XP_002272930.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Vitis vinifera]
Length = 502
Score = 39.7 bits (91), Expect(2) = 4e-06
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = -2
Query: 462 RFFRWGRSLYLSDQHSPYAWSLMFDLLSKN 373
+FFRW L+D HSPY+W+L+ D+L KN
Sbjct: 106 KFFRWSGH-QLNDNHSPYSWNLVVDMLGKN 134
Score = 37.0 bits (84), Expect(2) = 4e-06
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = -3
Query: 575 SSTPSS-VDRALDNTGVRVSSQDVEVVLKFSYSQPGVVV 462
++TPSS V+ L +T +RVS +DVE LK SY PG V
Sbjct: 67 ANTPSSTVEEVLHDTAIRVSPEDVEDSLKLSYGFPGSAV 105
>gb|EAZ24364.1| hypothetical protein OsJ_08117 [Oryza sativa Japonica Group]
Length = 438
Score = 44.3 bits (103), Expect(2) = 4e-06
Identities = 19/36 (52%), Positives = 23/36 (63%)
Frame = -2
Query: 474 RCCRRFFRWGRSLYLSDQHSPYAWSLMFDLLSKNPL 367
R FFRW +L QHSPY+W+L+ DLL KN L
Sbjct: 86 RAAVAFFRWAGHRHLRHQHSPYSWNLVVDLLGKNRL 121
Score = 32.3 bits (72), Expect(2) = 4e-06
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = -3
Query: 530 VRVSSQDVEVVLKFSYSQPGVVVA 459
VRV+S DVE VL+FSY+ P VA
Sbjct: 67 VRVTSSDVEQVLRFSYAHPRAAVA 90