BLASTX nr result
ID: Zanthoxylum22_contig00036917
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zanthoxylum22_contig00036917
(425 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II su... 111 2e-33
ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II su... 111 2e-33
ref|XP_006425357.1| hypothetical protein CICLE_v10024686mg [Citr... 111 2e-33
ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II su... 111 2e-33
ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II su... 111 2e-33
ref|XP_012469269.1| PREDICTED: DNA-directed RNA polymerase II su... 110 4e-30
gb|KJB17563.1| hypothetical protein B456_003G005700 [Gossypium r... 110 4e-30
ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su... 110 7e-30
gb|EMT33557.1| DNA-directed RNA polymerase II subunit RPB1 [Aegi... 105 9e-30
ref|XP_010113285.1| DNA-directed RNA polymerase II subunit rpb1 ... 107 9e-30
ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II su... 108 1e-29
ref|XP_011099129.1| PREDICTED: DNA-directed RNA polymerase II su... 109 1e-29
ref|XP_008448514.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 110 1e-29
ref|XP_011073958.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 106 1e-29
ref|XP_013656472.1| PREDICTED: DNA-directed RNA polymerase II su... 108 1e-29
ref|XP_013627895.1| PREDICTED: DNA-directed RNA polymerase II su... 108 1e-29
ref|XP_009109265.1| PREDICTED: DNA-directed RNA polymerase II su... 108 1e-29
ref|XP_003573479.1| PREDICTED: DNA-directed RNA polymerase II su... 107 2e-29
ref|XP_007046584.1| DNA-directed RNA polymerase II subunit RPB1 ... 110 2e-29
ref|XP_010266907.1| PREDICTED: DNA-directed RNA polymerase II su... 108 2e-29
>ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5
[Citrus sinensis]
Length = 1963
Score = 111 bits (277), Expect(2) = 2e-33
Identities = 53/67 (79%), Positives = 59/67 (88%)
Frame = -3
Query: 294 VMCHEDVDARRTRSKHLIEIVQVLGIEAVHRVVLDELRVIIRFDGSFVNYRHRAILRDTM 115
VMCHEDVDARRT S HLIEI++VLGIEAV R +LDELRV+I FDGS+VNYRH AIL DTM
Sbjct: 1336 VMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTM 1395
Query: 114 TYGGHLI 94
TY GHL+
Sbjct: 1396 TYRGHLM 1402
Score = 57.8 bits (138), Expect(2) = 2e-33
Identities = 23/34 (67%), Positives = 31/34 (91%)
Frame = -1
Query: 404 EVFIKKGKSTKYDDDDGLKLEEEWMVDAEGVNII 303
+VFIKKGK+TKYDD++G K E+EWM+D EGVN++
Sbjct: 1301 KVFIKKGKTTKYDDNEGFKSEDEWMLDTEGVNLL 1334
>ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X1
[Citrus sinensis] gi|568825318|ref|XP_006467028.1|
PREDICTED: DNA-directed RNA polymerase II subunit 1-like
isoform X2 [Citrus sinensis]
Length = 1860
Score = 111 bits (277), Expect(2) = 2e-33
Identities = 53/67 (79%), Positives = 59/67 (88%)
Frame = -3
Query: 294 VMCHEDVDARRTRSKHLIEIVQVLGIEAVHRVVLDELRVIIRFDGSFVNYRHRAILRDTM 115
VMCHEDVDARRT S HLIEI++VLGIEAV R +LDELRV+I FDGS+VNYRH AIL DTM
Sbjct: 1336 VMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTM 1395
Query: 114 TYGGHLI 94
TY GHL+
Sbjct: 1396 TYRGHLM 1402
Score = 57.8 bits (138), Expect(2) = 2e-33
Identities = 23/34 (67%), Positives = 31/34 (91%)
Frame = -1
Query: 404 EVFIKKGKSTKYDDDDGLKLEEEWMVDAEGVNII 303
+VFIKKGK+TKYDD++G K E+EWM+D EGVN++
Sbjct: 1301 KVFIKKGKTTKYDDNEGFKSEDEWMLDTEGVNLL 1334
>ref|XP_006425357.1| hypothetical protein CICLE_v10024686mg [Citrus clementina]
gi|557527347|gb|ESR38597.1| hypothetical protein
CICLE_v10024686mg [Citrus clementina]
Length = 1860
Score = 111 bits (277), Expect(2) = 2e-33
Identities = 53/67 (79%), Positives = 59/67 (88%)
Frame = -3
Query: 294 VMCHEDVDARRTRSKHLIEIVQVLGIEAVHRVVLDELRVIIRFDGSFVNYRHRAILRDTM 115
VMCHEDVDARRT S HLIEI++VLGIEAV R +LDELRV+I FDGS+VNYRH AIL DTM
Sbjct: 1336 VMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTM 1395
Query: 114 TYGGHLI 94
TY GHL+
Sbjct: 1396 TYRGHLM 1402
Score = 57.8 bits (138), Expect(2) = 2e-33
Identities = 23/34 (67%), Positives = 31/34 (91%)
Frame = -1
Query: 404 EVFIKKGKSTKYDDDDGLKLEEEWMVDAEGVNII 303
+VFIKKGK+TKYDD++G K E+EWM+D EGVN++
Sbjct: 1301 KVFIKKGKTTKYDDNEGFKSEDEWMLDTEGVNLL 1334
>ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X4
[Citrus sinensis]
Length = 1853
Score = 111 bits (277), Expect(2) = 2e-33
Identities = 53/67 (79%), Positives = 59/67 (88%)
Frame = -3
Query: 294 VMCHEDVDARRTRSKHLIEIVQVLGIEAVHRVVLDELRVIIRFDGSFVNYRHRAILRDTM 115
VMCHEDVDARRT S HLIEI++VLGIEAV R +LDELRV+I FDGS+VNYRH AIL DTM
Sbjct: 1336 VMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTM 1395
Query: 114 TYGGHLI 94
TY GHL+
Sbjct: 1396 TYRGHLM 1402
Score = 57.8 bits (138), Expect(2) = 2e-33
Identities = 23/34 (67%), Positives = 31/34 (91%)
Frame = -1
Query: 404 EVFIKKGKSTKYDDDDGLKLEEEWMVDAEGVNII 303
+VFIKKGK+TKYDD++G K E+EWM+D EGVN++
Sbjct: 1301 KVFIKKGKTTKYDDNEGFKSEDEWMLDTEGVNLL 1334
>ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X3
[Citrus sinensis]
Length = 1790
Score = 111 bits (277), Expect(2) = 2e-33
Identities = 53/67 (79%), Positives = 59/67 (88%)
Frame = -3
Query: 294 VMCHEDVDARRTRSKHLIEIVQVLGIEAVHRVVLDELRVIIRFDGSFVNYRHRAILRDTM 115
VMCHEDVDARRT S HLIEI++VLGIEAV R +LDELRV+I FDGS+VNYRH AIL DTM
Sbjct: 1336 VMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTM 1395
Query: 114 TYGGHLI 94
TY GHL+
Sbjct: 1396 TYRGHLM 1402
Score = 57.8 bits (138), Expect(2) = 2e-33
Identities = 23/34 (67%), Positives = 31/34 (91%)
Frame = -1
Query: 404 EVFIKKGKSTKYDDDDGLKLEEEWMVDAEGVNII 303
+VFIKKGK+TKYDD++G K E+EWM+D EGVN++
Sbjct: 1301 KVFIKKGKTTKYDDNEGFKSEDEWMLDTEGVNLL 1334
>ref|XP_012469269.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Gossypium
raimondii] gi|763750176|gb|KJB17564.1| hypothetical
protein B456_003G005700 [Gossypium raimondii]
gi|763750177|gb|KJB17565.1| hypothetical protein
B456_003G005700 [Gossypium raimondii]
gi|763750178|gb|KJB17566.1| hypothetical protein
B456_003G005700 [Gossypium raimondii]
gi|763750179|gb|KJB17567.1| hypothetical protein
B456_003G005700 [Gossypium raimondii]
Length = 1847
Score = 110 bits (274), Expect(2) = 4e-30
Identities = 52/67 (77%), Positives = 59/67 (88%)
Frame = -3
Query: 294 VMCHEDVDARRTRSKHLIEIVQVLGIEAVHRVVLDELRVIIRFDGSFVNYRHRAILRDTM 115
VMCHEDVDARRT S HLIE+++VLGIEAV R +LDELRV+I FDGS+VNYRH AIL DTM
Sbjct: 1337 VMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTM 1396
Query: 114 TYGGHLI 94
TY GHL+
Sbjct: 1397 TYRGHLM 1403
Score = 48.1 bits (113), Expect(2) = 4e-30
Identities = 19/34 (55%), Positives = 28/34 (82%)
Frame = -1
Query: 404 EVFIKKGKSTKYDDDDGLKLEEEWMVDAEGVNII 303
+VFIK GK++K+D+ DG K EEW++D EGVN++
Sbjct: 1302 KVFIKHGKASKFDEADGYKTGEEWVLDTEGVNLL 1335
>gb|KJB17563.1| hypothetical protein B456_003G005700 [Gossypium raimondii]
Length = 1570
Score = 110 bits (274), Expect(2) = 4e-30
Identities = 52/67 (77%), Positives = 59/67 (88%)
Frame = -3
Query: 294 VMCHEDVDARRTRSKHLIEIVQVLGIEAVHRVVLDELRVIIRFDGSFVNYRHRAILRDTM 115
VMCHEDVDARRT S HLIE+++VLGIEAV R +LDELRV+I FDGS+VNYRH AIL DTM
Sbjct: 1060 VMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTM 1119
Query: 114 TYGGHLI 94
TY GHL+
Sbjct: 1120 TYRGHLM 1126
Score = 48.1 bits (113), Expect(2) = 4e-30
Identities = 19/34 (55%), Positives = 28/34 (82%)
Frame = -1
Query: 404 EVFIKKGKSTKYDDDDGLKLEEEWMVDAEGVNII 303
+VFIK GK++K+D+ DG K EEW++D EGVN++
Sbjct: 1025 KVFIKHGKASKFDEADGYKTGEEWVLDTEGVNLL 1058
>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Vitis vinifera]
Length = 1848
Score = 110 bits (274), Expect(2) = 7e-30
Identities = 52/67 (77%), Positives = 59/67 (88%)
Frame = -3
Query: 294 VMCHEDVDARRTRSKHLIEIVQVLGIEAVHRVVLDELRVIIRFDGSFVNYRHRAILRDTM 115
VMCHEDVDARRT S HLIE+++VLGIEAV R +LDELRV+I FDGS+VNYRH AIL DTM
Sbjct: 1336 VMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTM 1395
Query: 114 TYGGHLI 94
TY GHL+
Sbjct: 1396 TYRGHLM 1402
Score = 47.4 bits (111), Expect(2) = 7e-30
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = -1
Query: 404 EVFIKKGKSTKYDDDDGLKLEEEWMVDAEGVNII 303
+VFIK GK K+D+ +G K E EWM+D EGVN++
Sbjct: 1301 KVFIKSGKVNKFDESEGFKPEVEWMLDTEGVNLL 1334
>gb|EMT33557.1| DNA-directed RNA polymerase II subunit RPB1 [Aegilops tauschii]
Length = 1905
Score = 105 bits (263), Expect(2) = 9e-30
Identities = 50/67 (74%), Positives = 57/67 (85%)
Frame = -3
Query: 294 VMCHEDVDARRTRSKHLIEIVQVLGIEAVHRVVLDELRVIIRFDGSFVNYRHRAILRDTM 115
VMCHEDVD RT S HLIE+++VLGIEAV R +LDELRV+I FDGS+VNYRH AIL DTM
Sbjct: 1390 VMCHEDVDPSRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTM 1449
Query: 114 TYGGHLI 94
TY GHL+
Sbjct: 1450 TYRGHLM 1456
Score = 51.2 bits (121), Expect(2) = 9e-30
Identities = 21/34 (61%), Positives = 28/34 (82%)
Frame = -1
Query: 404 EVFIKKGKSTKYDDDDGLKLEEEWMVDAEGVNII 303
+VFIKKGK K+D+ +G K EEEWM+D EGVN++
Sbjct: 1355 KVFIKKGKVNKFDEKEGFKGEEEWMLDTEGVNLL 1388
>ref|XP_010113285.1| DNA-directed RNA polymerase II subunit rpb1 [Morus notabilis]
gi|587949090|gb|EXC35292.1| DNA-directed RNA polymerase
II subunit rpb1 [Morus notabilis]
Length = 1866
Score = 107 bits (267), Expect(2) = 9e-30
Identities = 50/67 (74%), Positives = 59/67 (88%)
Frame = -3
Query: 294 VMCHEDVDARRTRSKHLIEIVQVLGIEAVHRVVLDELRVIIRFDGSFVNYRHRAILRDTM 115
V+CHEDVDA+RT S HLIE+++VLGIEAV R +LDELRV+I FDGS+VNYRH AIL DTM
Sbjct: 1351 VICHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTM 1410
Query: 114 TYGGHLI 94
TY GHL+
Sbjct: 1411 TYRGHLM 1417
Score = 49.7 bits (117), Expect(2) = 9e-30
Identities = 20/34 (58%), Positives = 27/34 (79%)
Frame = -1
Query: 404 EVFIKKGKSTKYDDDDGLKLEEEWMVDAEGVNII 303
+VFIK GK K+D++DG K E EWM+D EGVN++
Sbjct: 1316 KVFIKHGKVNKFDENDGFKPENEWMLDTEGVNLL 1349
>ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Oryza
brachyantha]
Length = 1855
Score = 108 bits (270), Expect(2) = 1e-29
Identities = 51/67 (76%), Positives = 58/67 (86%)
Frame = -3
Query: 294 VMCHEDVDARRTRSKHLIEIVQVLGIEAVHRVVLDELRVIIRFDGSFVNYRHRAILRDTM 115
VMCHEDVDA RT S HLIE+++VLGIEAV R +LDELRV+I FDGS+VNYRH AIL DTM
Sbjct: 1336 VMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTM 1395
Query: 114 TYGGHLI 94
TY GHL+
Sbjct: 1396 TYRGHLM 1402
Score = 48.1 bits (113), Expect(2) = 1e-29
Identities = 19/34 (55%), Positives = 27/34 (79%)
Frame = -1
Query: 404 EVFIKKGKSTKYDDDDGLKLEEEWMVDAEGVNII 303
+VFIK GK K++D+DG K + EWM+D EGVN++
Sbjct: 1301 KVFIKYGKVNKFEDNDGFKPDNEWMLDTEGVNLL 1334
>ref|XP_011099129.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Sesamum indicum]
Length = 1848
Score = 109 bits (273), Expect(2) = 1e-29
Identities = 51/67 (76%), Positives = 59/67 (88%)
Frame = -3
Query: 294 VMCHEDVDARRTRSKHLIEIVQVLGIEAVHRVVLDELRVIIRFDGSFVNYRHRAILRDTM 115
VMCHEDVDARRT S HLIE+++VLGIEAV + +LDELRV+I FDGS+VNYRH AIL DTM
Sbjct: 1336 VMCHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDGSYVNYRHLAILCDTM 1395
Query: 114 TYGGHLI 94
TY GHL+
Sbjct: 1396 TYRGHLM 1402
Score = 47.0 bits (110), Expect(2) = 1e-29
Identities = 18/34 (52%), Positives = 26/34 (76%)
Frame = -1
Query: 404 EVFIKKGKSTKYDDDDGLKLEEEWMVDAEGVNII 303
+VFIK K K+D+++G K E EWM+D EGVN++
Sbjct: 1301 KVFIKNSKLNKFDENEGFKAENEWMLDTEGVNLL 1334
>ref|XP_008448514.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit 1 [Cucumis melo]
Length = 1837
Score = 110 bits (274), Expect(2) = 1e-29
Identities = 52/67 (77%), Positives = 59/67 (88%)
Frame = -3
Query: 294 VMCHEDVDARRTRSKHLIEIVQVLGIEAVHRVVLDELRVIIRFDGSFVNYRHRAILRDTM 115
VMCHEDVDARRT S HLIE+++VLGIEAV R +LDELRV+I FDGS+VNYRH AIL DTM
Sbjct: 1336 VMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTM 1395
Query: 114 TYGGHLI 94
TY GHL+
Sbjct: 1396 TYRGHLM 1402
Score = 46.6 bits (109), Expect(2) = 1e-29
Identities = 19/34 (55%), Positives = 27/34 (79%)
Frame = -1
Query: 404 EVFIKKGKSTKYDDDDGLKLEEEWMVDAEGVNII 303
+VFIK GK K+D+++G K E EWM+D EGVN++
Sbjct: 1301 KVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLL 1334
>ref|XP_011073958.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit 1-like [Sesamum indicum]
Length = 1843
Score = 106 bits (264), Expect(2) = 1e-29
Identities = 49/67 (73%), Positives = 58/67 (86%)
Frame = -3
Query: 294 VMCHEDVDARRTRSKHLIEIVQVLGIEAVHRVVLDELRVIIRFDGSFVNYRHRAILRDTM 115
V CHEDVD+RRT S HLIE+++VLGIEAV + +LDELRV+I FDGS+VNYRH AIL DTM
Sbjct: 1340 VACHEDVDSRRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDGSYVNYRHLAILCDTM 1399
Query: 114 TYGGHLI 94
TY GHL+
Sbjct: 1400 TYRGHLM 1406
Score = 50.1 bits (118), Expect(2) = 1e-29
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = -1
Query: 404 EVFIKKGKSTKYDDDDGLKLEEEWMVDAEGVNIILAESC 288
+VFIK GK K+D+++G K E EWM+D EGVN +LA +C
Sbjct: 1305 KVFIKNGKVNKFDENEGFKAENEWMLDTEGVN-LLAVAC 1342
>ref|XP_013656472.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Brassica napus]
gi|923690658|ref|XP_013656473.1| PREDICTED: DNA-directed
RNA polymerase II subunit 1 [Brassica napus]
gi|923690661|ref|XP_013656474.1| PREDICTED: DNA-directed
RNA polymerase II subunit 1 [Brassica napus]
gi|923690664|ref|XP_013656475.1| PREDICTED: DNA-directed
RNA polymerase II subunit 1 [Brassica napus]
Length = 1838
Score = 108 bits (269), Expect(2) = 1e-29
Identities = 51/67 (76%), Positives = 58/67 (86%)
Frame = -3
Query: 294 VMCHEDVDARRTRSKHLIEIVQVLGIEAVHRVVLDELRVIIRFDGSFVNYRHRAILRDTM 115
VMCHEDVD +RT S HLIEI++VLGIEAV R +LDELRV+I FDGS+VNYRH AIL DTM
Sbjct: 1337 VMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTM 1396
Query: 114 TYGGHLI 94
TY GHL+
Sbjct: 1397 TYRGHLM 1403
Score = 48.1 bits (113), Expect(2) = 1e-29
Identities = 18/34 (52%), Positives = 28/34 (82%)
Frame = -1
Query: 404 EVFIKKGKSTKYDDDDGLKLEEEWMVDAEGVNII 303
+VFIK+ + +K+D+D+G K EEWM+D EGVN++
Sbjct: 1302 KVFIKQVRKSKFDEDEGFKTSEEWMLDTEGVNLL 1335
>ref|XP_013627895.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Brassica
oleracea var. oleracea] gi|922449076|ref|XP_013627896.1|
PREDICTED: DNA-directed RNA polymerase II subunit 1
[Brassica oleracea var. oleracea]
gi|922449079|ref|XP_013627897.1| PREDICTED: DNA-directed
RNA polymerase II subunit 1 [Brassica oleracea var.
oleracea]
Length = 1838
Score = 108 bits (269), Expect(2) = 1e-29
Identities = 51/67 (76%), Positives = 58/67 (86%)
Frame = -3
Query: 294 VMCHEDVDARRTRSKHLIEIVQVLGIEAVHRVVLDELRVIIRFDGSFVNYRHRAILRDTM 115
VMCHEDVD +RT S HLIEI++VLGIEAV R +LDELRV+I FDGS+VNYRH AIL DTM
Sbjct: 1337 VMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTM 1396
Query: 114 TYGGHLI 94
TY GHL+
Sbjct: 1397 TYRGHLM 1403
Score = 48.1 bits (113), Expect(2) = 1e-29
Identities = 18/34 (52%), Positives = 28/34 (82%)
Frame = -1
Query: 404 EVFIKKGKSTKYDDDDGLKLEEEWMVDAEGVNII 303
+VFIK+ + +K+D+D+G K EEWM+D EGVN++
Sbjct: 1302 KVFIKQVRKSKFDEDEGFKTSEEWMLDTEGVNLL 1335
>ref|XP_009109265.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Brassica rapa]
gi|685346497|ref|XP_009109266.1| PREDICTED: DNA-directed
RNA polymerase II subunit 1 [Brassica rapa]
gi|685346499|ref|XP_009109267.1| PREDICTED: DNA-directed
RNA polymerase II subunit 1 [Brassica rapa]
gi|685346502|ref|XP_009109268.1| PREDICTED: DNA-directed
RNA polymerase II subunit 1 [Brassica rapa]
Length = 1838
Score = 108 bits (269), Expect(2) = 1e-29
Identities = 51/67 (76%), Positives = 58/67 (86%)
Frame = -3
Query: 294 VMCHEDVDARRTRSKHLIEIVQVLGIEAVHRVVLDELRVIIRFDGSFVNYRHRAILRDTM 115
VMCHEDVD +RT S HLIEI++VLGIEAV R +LDELRV+I FDGS+VNYRH AIL DTM
Sbjct: 1337 VMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTM 1396
Query: 114 TYGGHLI 94
TY GHL+
Sbjct: 1397 TYRGHLM 1403
Score = 48.1 bits (113), Expect(2) = 1e-29
Identities = 18/34 (52%), Positives = 28/34 (82%)
Frame = -1
Query: 404 EVFIKKGKSTKYDDDDGLKLEEEWMVDAEGVNII 303
+VFIK+ + +K+D+D+G K EEWM+D EGVN++
Sbjct: 1302 KVFIKQVRKSKFDEDEGFKTSEEWMLDTEGVNLL 1335
>ref|XP_003573479.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Brachypodium
distachyon] gi|944059756|gb|KQJ95346.1| hypothetical
protein BRADI_3g16660 [Brachypodium distachyon]
Length = 1862
Score = 107 bits (268), Expect(2) = 2e-29
Identities = 51/67 (76%), Positives = 58/67 (86%)
Frame = -3
Query: 294 VMCHEDVDARRTRSKHLIEIVQVLGIEAVHRVVLDELRVIIRFDGSFVNYRHRAILRDTM 115
VMCHEDVDA RT S HLIE+++VLGIEAV R +LDELRV+I FDGS+VNYRH AIL DTM
Sbjct: 1337 VMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTM 1396
Query: 114 TYGGHLI 94
TY GHL+
Sbjct: 1397 TYRGHLM 1403
Score = 48.1 bits (113), Expect(2) = 2e-29
Identities = 19/34 (55%), Positives = 27/34 (79%)
Frame = -1
Query: 404 EVFIKKGKSTKYDDDDGLKLEEEWMVDAEGVNII 303
+VFIK GK K+D++DG K + EWM+D EGVN++
Sbjct: 1302 KVFIKYGKINKFDENDGFKPDNEWMLDTEGVNLL 1335
>ref|XP_007046584.1| DNA-directed RNA polymerase II subunit RPB1 isoform 1 [Theobroma
cacao] gi|590702281|ref|XP_007046585.1| DNA-directed RNA
polymerase II subunit RPB1 isoform 1 [Theobroma cacao]
gi|590702285|ref|XP_007046586.1| DNA-directed RNA
polymerase II subunit RPB1 isoform 1 [Theobroma cacao]
gi|508698845|gb|EOX90741.1| DNA-directed RNA polymerase
II subunit RPB1 isoform 1 [Theobroma cacao]
gi|508698846|gb|EOX90742.1| DNA-directed RNA polymerase
II subunit RPB1 isoform 1 [Theobroma cacao]
gi|508698847|gb|EOX90743.1| DNA-directed RNA polymerase
II subunit RPB1 isoform 1 [Theobroma cacao]
Length = 1861
Score = 110 bits (274), Expect(2) = 2e-29
Identities = 52/67 (77%), Positives = 59/67 (88%)
Frame = -3
Query: 294 VMCHEDVDARRTRSKHLIEIVQVLGIEAVHRVVLDELRVIIRFDGSFVNYRHRAILRDTM 115
VMCHEDVDARRT S HLIE+++VLGIEAV R +LDELRV+I FDGS+VNYRH AIL DTM
Sbjct: 1337 VMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTM 1396
Query: 114 TYGGHLI 94
TY GHL+
Sbjct: 1397 TYRGHLM 1403
Score = 45.8 bits (107), Expect(2) = 2e-29
Identities = 18/34 (52%), Positives = 27/34 (79%)
Frame = -1
Query: 404 EVFIKKGKSTKYDDDDGLKLEEEWMVDAEGVNII 303
+VFIK K++K+D+ DG K EEW++D EGVN++
Sbjct: 1302 KVFIKHSKASKFDEADGYKTGEEWVLDTEGVNLL 1335
>ref|XP_010266907.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Nelumbo
nucifera]
Length = 1848
Score = 108 bits (270), Expect(2) = 2e-29
Identities = 51/67 (76%), Positives = 58/67 (86%)
Frame = -3
Query: 294 VMCHEDVDARRTRSKHLIEIVQVLGIEAVHRVVLDELRVIIRFDGSFVNYRHRAILRDTM 115
VMCHEDVDA RT S HLIE+++VLGIEAV R +LDELRV+I FDGS+VNYRH AIL DTM
Sbjct: 1336 VMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTM 1395
Query: 114 TYGGHLI 94
TY GHL+
Sbjct: 1396 TYRGHLM 1402
Score = 47.4 bits (111), Expect(2) = 2e-29
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = -1
Query: 404 EVFIKKGKSTKYDDDDGLKLEEEWMVDAEGVNII 303
+VFIK GK K+D+ +G K E EWM+D EGVN++
Sbjct: 1301 KVFIKSGKVNKFDESEGFKPEVEWMLDTEGVNLL 1334