BLASTX nr result
ID: Zanthoxylum22_contig00022195
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zanthoxylum22_contig00022195
(3474 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1914 0.0
ref|XP_011024314.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1665 0.0
ref|XP_011024307.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1664 0.0
ref|XP_012072320.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1662 0.0
ref|XP_012072321.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1662 0.0
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [... 1662 0.0
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th... 1654 0.0
ref|XP_012072326.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1650 0.0
ref|XP_012072327.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1650 0.0
ref|XP_010093320.1| RNA-dependent RNA polymerase 1 [Morus notabi... 1631 0.0
ref|XP_012463738.1| PREDICTED: RNA-dependent RNA polymerase 1 [G... 1613 0.0
gb|KHG26498.1| RNA-dependent RNA polymerase 1 -like protein [Gos... 1611 0.0
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 1608 0.0
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 1604 0.0
ref|XP_010275353.1| PREDICTED: probable RNA-dependent RNA polyme... 1587 0.0
ref|XP_002284914.1| PREDICTED: probable RNA-dependent RNA polyme... 1578 0.0
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1 is... 1547 0.0
ref|XP_010066561.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1543 0.0
ref|XP_008220919.1| PREDICTED: probable RNA-dependent RNA polyme... 1541 0.0
ref|XP_011075687.1| PREDICTED: probable RNA-dependent RNA polyme... 1539 0.0
>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
Length = 1132
Score = 1914 bits (4958), Expect = 0.0
Identities = 947/1118 (84%), Positives = 1007/1118 (90%), Gaps = 1/1118 (0%)
Frame = -3
Query: 3412 MGKTIQVYGFPSGVTAEAVKNLLQSHTGEETIYAIKVRLPKNGALRAYAIVQFTTDASAV 3233
MGKTIQV+GFP+GVTAEAVK+ L+S TG T+YA+K+R PK G R YAIVQFTT +A
Sbjct: 1 MGKTIQVFGFPAGVTAEAVKDFLESKTGGGTVYALKLRTPKKGVGRLYAIVQFTTKEAAD 60
Query: 3232 TIISLA-NSRRLWYGRSYLNARPMENDIVPRPRTFLYTMESIKLSFGCKISKEKFAVLWR 3056
TIISLA + +LWYGRSYLNAR ME D VPRPRTF++TME I+L FGCKIS EKFAVLWR
Sbjct: 61 TIISLACRTEKLWYGRSYLNARRMEQDTVPRPRTFMHTMEHIELHFGCKISNEKFAVLWR 120
Query: 3055 GVNVTVNFGFGMRKINFLLSHLETEYRLELAYENIWEIELHSPHGQTAKYLLIQLLGAPR 2876
GVNVTVNFGFGMRKINFLLSHL EYRLEL YENIWEIELH P Q KYLLIQLLGAPR
Sbjct: 121 GVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAPR 180
Query: 2875 IFKKDVCSSDLVYESLLFNFFMEIPDDQWVRARDFTPSNCIGQSTGLCLELPYGLELPDF 2696
IF+K + S DL+YES +FNFF E+PDDQWVR DFTPSN IGQSTGLC+ELPY LELPDF
Sbjct: 181 IFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELPDF 240
Query: 2695 QENFAYYRESRGNFTLETGFAYSKSLDLVPIVGPPAGITLPYEILFKINLLVQNGCVPGP 2516
+ENFAYY+ES F LETG AYS+SLDLVPIVGPP GI LPYEILFKINLLVQNGCV GP
Sbjct: 241 KENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGP 300
Query: 2515 LLDSNFYRLVDPCRTNVSMSCIEHALDKLYHFKECCYEPSRWLTEQYTKYITSGRMPRLP 2336
LLDSNFYRLVDP R VS+SCIEHALDKLYH KECCYEPSRWLT+QY KY+TS P P
Sbjct: 301 LLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSP 360
Query: 2335 AINLDDGLVYVHRLQVTPSKVYFSGPEINVSNRVLRHFRGYIDNFLRVSFIDEDLDKIHS 2156
AI+LDDGLVYVHR+QVTPS+VYF GPEINVSNRVLRHFR IDNFLR+SFIDEDLDKIHS
Sbjct: 361 AISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHS 420
Query: 2155 NDLSPRGSSATEIRRTEIYERILSTLHDGIVIGDKKFEFLAFSSSQLRESSTWMFASTDG 1976
DLSPRGSSAT+I RT IY RILSTL +GI+IGD+KFEFLAFSSSQLRESS WMFAS G
Sbjct: 421 TDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG 480
Query: 1975 LTAAVIREWMGNFRQIRNVAKYAARLGQSFSSSTETLNVGKNEIEIIPDVKIESGNTTYV 1796
LTAA IREWMGNFR+IRNVAKYAARLGQSFSSS ETL+V +EIEIIPDVKIE G T YV
Sbjct: 481 LTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYV 540
Query: 1795 FSDGIGKISSEFSMKVASKCGLKDSPPSAFQIRYGGYKGVVAVDPTSSKKLSLRDSMCKY 1616
FSDGIGK+S+EF+ KVASKCGLKD+PPSAFQIRYGGYKGVVA DPTSSKKLSLRDSM KY
Sbjct: 541 FSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKY 600
Query: 1615 ESELMKLDVLAWSKYQPCFLNRQLISLLSTLGIPDEVFEKKQREAVRQLDDILRDPLKAQ 1436
ESEL KLDVLAWSKYQPCFLNRQLISLLSTLGI DE+FEKKQREAVRQLD IL DPLKAQ
Sbjct: 601 ESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQ 660
Query: 1435 EALELMSPGENTNILKEMLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSM 1256
EALELMSPGENTNILKE+LICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSM
Sbjct: 661 EALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSM 720
Query: 1255 MGCLDETRTLDYGQVFVQFSGAGYRQLFDEYSVFGSSGSRQRFIVEGRVVVAKNPCLHPG 1076
MGCLDETRTL+YGQVFVQ SGAGYRQL E S+F SS SRQRFIV+G VVVAKNPCLHPG
Sbjct: 721 MGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPG 780
Query: 1075 DVRVLRAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDSELIPRKHDEP 896
DVRVL+AVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWD ELIP + D P
Sbjct: 781 DVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPP 840
Query: 895 MDYAPAPSTQLDHDVRIEEVEEYFTNYIVNDSLGIISNAHTVFADREPLKARSDPCLQLA 716
MDY PA S QLDHDV+IE+VEEYFTNYIVNDSLGII+NAHTVFADREP KARS+PCLQLA
Sbjct: 841 MDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPHKARSEPCLQLA 900
Query: 715 EKFSIAVDFPKTGVPADIPRHLYVKEYPDFMEKPDKPTYESNNVIGKLFREVKDISPQTS 536
EKFSIAVDFPKTGVPA+IP HLYVKEYPDFMEKPDKPTYES NVIGKLFR VKDI+P TS
Sbjct: 901 EKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTS 960
Query: 535 CIRLFTKEVARRSYDPDMEVDGFEDHIHDAFYHKGNYDYKLGNLMDYYGIKTEAEILSGG 356
CIRLFTKEVARRSYDPDMEVDGFEDHI DA YHKGNYDYKLGNLMDYYGIKTEAEIL+G
Sbjct: 961 CIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGS 1020
Query: 355 ILKMSKSFTKRRDAEAIGLAVRSLRKEARAWFKEKRSGLDYEDDAYAKASAWYHVTYHHS 176
I+KMSKSFTKRRDAEAIG+AVR+LRKEARAWFKEK SG D EDDAYAKASAWYHVTYH
Sbjct: 1021 IMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEK-SGSDTEDDAYAKASAWYHVTYHPD 1079
Query: 175 YWGCYNEDMNRDHFLSFPWCVYDKLIEIKKNKTSIRNA 62
YWGCYN MNRDHFLSFPWCVYD+L+EIKK+KTSI NA
Sbjct: 1080 YWGCYNHGMNRDHFLSFPWCVYDRLVEIKKDKTSIGNA 1117
>ref|XP_011024314.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X2 [Populus
euphratica]
Length = 1132
Score = 1665 bits (4311), Expect = 0.0
Identities = 812/1118 (72%), Positives = 938/1118 (83%), Gaps = 1/1118 (0%)
Frame = -3
Query: 3412 MGKTIQVYGFPSGVTAEAVKNLLQSHTGEETIYAIKVRLPKNGALRAYAIVQFTTDASAV 3233
M KT+QV GFPS TA AV+ L+S+TG T+ A+K+R + R YAIVQFTT +
Sbjct: 1 MSKTVQVSGFPSSATAGAVQVFLESYTGGGTVEALKIRETRTRGARKYAIVQFTTTRATE 60
Query: 3232 TIISLANSRRLWYGRSYLNARPMENDIVPRPRTFLYTMESIKLSFGCKISKEKFAVLWRG 3053
IISLAN +RLWYGRSYLNARPM+ DI+P+PR+ L+TMES+ L FG + SKEKF+ +W G
Sbjct: 61 QIISLAN-QRLWYGRSYLNARPMDRDIIPQPRSSLHTMESVTLHFGYQTSKEKFSAVWSG 119
Query: 3052 VNVTVNFGFGMRKINFLLSHLETEYRLELAYENIWEIELHSPHGQTAKYLLIQLLGAPRI 2873
NV+VNFG GMRK++F LSH EY+L L +ENIW+IELH P GQT KYLLIQL GAPRI
Sbjct: 120 NNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPRI 179
Query: 2872 FKKDVCSSDLVYESLLFNFFMEIPDDQWVRARDFTPSNCIGQSTGLCLELPYGLELPDFQ 2693
++++V SS ++E L N+F +IPD+QWVR DFTPS IG S+ LCLELP L+LP+F
Sbjct: 180 YEREVPSSLNLFEDPLLNYFRDIPDEQWVRTTDFTPSCSIGHSSSLCLELPSHLQLPNFN 239
Query: 2692 ENFAYYRESRGNFTLETGFAYSKSLDLVPIVGPPAGITLPYEILFKINLLVQNGCVPGPL 2513
ENF YY+E+ G F LE+G +S++ DLVPIVGP +G+ LPY ILF++NLLVQNGC+ G +
Sbjct: 240 ENFFYYKENEGTFVLESGSTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGSM 299
Query: 2512 LDSNFYRLVDPCRTNVSMSCIEHALDKLYHFKECCYEPSRWLTEQYTKYITSGRMPRLPA 2333
LD FYRLVDP R V CIEHAL+KLYH KECCYEPS+W EQY KY+TSG PR P
Sbjct: 300 LDDIFYRLVDPNRMPVR--CIEHALEKLYHLKECCYEPSKWFNEQYRKYLTSGNPPRSPV 357
Query: 2332 INLDDGLVYVHRLQVTPSKVYFSGPEINVSNRVLRHFRGYIDNFLRVSFIDEDLDKIHSN 2153
++LD GLVYV+++Q+TP KV+F GPE+N+SNRVLR + IDNFLRVSF+DE+L+KIHS
Sbjct: 358 LSLDAGLVYVYKVQITPCKVFFCGPEVNISNRVLRQYLEEIDNFLRVSFVDEELEKIHST 417
Query: 2152 DLSPRGSSATEIRRTEIYERILSTLHDGIVIGDKKFEFLAFSSSQLRESSTWMFASTDGL 1973
D+SPR SS E+RRT IY RILSTL +GIVIGDKKFEFLAFSSSQLRE+S WMFAS GL
Sbjct: 418 DVSPRTSSRNELRRTAIYNRILSTLRNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGL 477
Query: 1972 TAAVIREWMGNFRQIRNVAKYAARLGQSFSSSTETLNVGKNEIEIIPDVKIESGNTTYVF 1793
TAA IR WMG+F QIRNVA+YAARLGQSFSSSTETL+V ++EIEII D+++ G T Y+F
Sbjct: 478 TAADIRRWMGSFHQIRNVARYAARLGQSFSSSTETLSVSRHEIEIISDIEVSRGGTRYLF 537
Query: 1792 SDGIGKISSEFSMKVASKCGLKDSPPSAFQIRYGGYKGVVAVDPTSSKKLSLRDSMCKYE 1613
SDGIGKIS+EF+ KVA KCG K PSAFQIRY GYKGVVAVDPTS+KKLSLR SM KYE
Sbjct: 538 SDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSTKKLSLRMSMFKYE 597
Query: 1612 SELMKLDVLAWSKYQPCFLNRQLISLLSTLGIPDEVFEKKQREAVRQLDDILRDPLKAQE 1433
SE KLDVLA SKYQPCFLNRQLI+LLSTLG+PD FE+KQREAV QLD IL DPL+AQE
Sbjct: 598 SENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAILTDPLRAQE 657
Query: 1432 ALELMSPGENTNILKEMLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 1253
AL LMSPGENTNILKEML+CGY+PDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGR MM
Sbjct: 658 ALVLMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRLMM 717
Query: 1252 GCLDETRTLDYGQVFVQFSGAGYRQLFDEYSVFGSSGSRQRFIVEGRVVVAKNPCLHPGD 1073
GCLDETRTL++GQVFVQFSG+ +R L+D VF G Q +++EG VVVAKNPCLHPGD
Sbjct: 718 GCLDETRTLEHGQVFVQFSGSRFRNLYDSSDVFSERGRGQCYLIEGSVVVAKNPCLHPGD 777
Query: 1072 VRVLRAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDSELIPRKHDEPM 893
VR+L+AV+VPALHHMVDCVVFPQKG RPHPN+CSGSDLDGDIYFVCWD ELIP + PM
Sbjct: 778 VRILKAVDVPALHHMVDCVVFPQKGPRPHPNQCSGSDLDGDIYFVCWDPELIPSQQISPM 837
Query: 892 DYAPAPSTQLDHDVRIEEVEEYFTNYIVNDSLGIISNAHTVFADREPLKARSDPCLQLAE 713
DY P P+ QLDHDV IEEVEEYFTNYIVNDSLGII+NAHT FAD+E LKA S+PCL+LA
Sbjct: 838 DYTPEPTLQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTAFADKESLKAMSEPCLELAR 897
Query: 712 KFSIAVDFPKTGVPADIPRHLYVKEYPDFMEKPDKPTYESNNVIGKLFREVKDISPQTSC 533
KFSIAVDFPKTGVPA+IP +L V+EYPDFMEKPDKP+YES NVIGKLFREVKDI+P+TS
Sbjct: 898 KFSIAVDFPKTGVPAEIPSNLRVREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSS 957
Query: 532 IRLFTKEVARRSYDPDMEVDGFEDHIHDAFYHKGNYDYKLGNLMDYYGIKTEAEILSGGI 353
IR FT +VAR+ YDPDMEVDGFED+I DAFY+K NYDYKLGNLM+YYGIKTEAE+LSG
Sbjct: 958 IRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSF 1017
Query: 352 LKMSKSFTKRRDAEAIGLAVRSLRKEARAWFKEKRSGLDYE-DDAYAKASAWYHVTYHHS 176
+KMSKSFTK+RDAEAIG+AVRSLRKEAR+WF EK SGLD + DD AKASAWYHVTYHH+
Sbjct: 1018 MKMSKSFTKKRDAEAIGMAVRSLRKEARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHN 1077
Query: 175 YWGCYNEDMNRDHFLSFPWCVYDKLIEIKKNKTSIRNA 62
YWGCYNE MNRDHFLSFPWC+YDKLI+IKKN IR +
Sbjct: 1078 YWGCYNEGMNRDHFLSFPWCLYDKLIQIKKNSARIRRS 1115
>ref|XP_011024307.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Populus
euphratica]
Length = 1132
Score = 1664 bits (4308), Expect = 0.0
Identities = 812/1118 (72%), Positives = 937/1118 (83%), Gaps = 1/1118 (0%)
Frame = -3
Query: 3412 MGKTIQVYGFPSGVTAEAVKNLLQSHTGEETIYAIKVRLPKNGALRAYAIVQFTTDASAV 3233
M KT+QV GFPS TA AV+ L+S+TG T+ A+K+R + R YAIVQFTT +
Sbjct: 1 MSKTVQVSGFPSSATAGAVQVFLESYTGGGTVEALKIRETRTRGARKYAIVQFTTTRATE 60
Query: 3232 TIISLANSRRLWYGRSYLNARPMENDIVPRPRTFLYTMESIKLSFGCKISKEKFAVLWRG 3053
IISLAN +RLWYGRSYLNARPM+ DI+P+PR+ L+TMES+ L FG + SKEKF+ +W G
Sbjct: 61 QIISLAN-QRLWYGRSYLNARPMDRDIIPQPRSSLHTMESVTLHFGYQTSKEKFSAVWSG 119
Query: 3052 VNVTVNFGFGMRKINFLLSHLETEYRLELAYENIWEIELHSPHGQTAKYLLIQLLGAPRI 2873
NV+VNFG GMRK++F LSH EY+L L +ENIW+IELH P GQT KYLLIQL GAPRI
Sbjct: 120 NNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPRI 179
Query: 2872 FKKDVCSSDLVYESLLFNFFMEIPDDQWVRARDFTPSNCIGQSTGLCLELPYGLELPDFQ 2693
++++V SS ++E L N+F +IPD+QWVR DFTPS IG S+ LCLELP L+LP+F
Sbjct: 180 YEREVPSSLNLFEDPLLNYFRDIPDEQWVRTTDFTPSCSIGHSSSLCLELPSHLQLPNFN 239
Query: 2692 ENFAYYRESRGNFTLETGFAYSKSLDLVPIVGPPAGITLPYEILFKINLLVQNGCVPGPL 2513
ENF YY+E+ G F LE+G +S++ DLVPIVGP +G+ LPY ILF++NLLVQNGC+ G +
Sbjct: 240 ENFFYYKENEGTFVLESGSTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGSM 299
Query: 2512 LDSNFYRLVDPCRTNVSMSCIEHALDKLYHFKECCYEPSRWLTEQYTKYITSGRMPRLPA 2333
LD FYRLVDP R V CIEHAL+KLYH KECCYEPS+W EQY KY+TSG PR P
Sbjct: 300 LDDIFYRLVDPNRMPVR--CIEHALEKLYHLKECCYEPSKWFNEQYRKYLTSGNPPRSPV 357
Query: 2332 INLDDGLVYVHRLQVTPSKVYFSGPEINVSNRVLRHFRGYIDNFLRVSFIDEDLDKIHSN 2153
++LD GLVYV+++Q+TP KV+F GPE+N+SNRVLR + IDNFLRVSF+DE+L+KIHS
Sbjct: 358 LSLDAGLVYVYKVQITPCKVFFCGPEVNISNRVLRQYLEEIDNFLRVSFVDEELEKIHST 417
Query: 2152 DLSPRGSSATEIRRTEIYERILSTLHDGIVIGDKKFEFLAFSSSQLRESSTWMFASTDGL 1973
D+SPR SS E+RRT IY RILSTL +GIVIGDKKFEFLAFSSSQLRE+S WMFAS GL
Sbjct: 418 DVSPRTSSRNELRRTAIYNRILSTLRNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGL 477
Query: 1972 TAAVIREWMGNFRQIRNVAKYAARLGQSFSSSTETLNVGKNEIEIIPDVKIESGNTTYVF 1793
TAA IR WMG+F QIRNVA+YAARLGQSFSSSTETL+V ++EIEII D+++ G T Y+F
Sbjct: 478 TAADIRRWMGSFHQIRNVARYAARLGQSFSSSTETLSVSRHEIEIISDIEVSRGGTRYLF 537
Query: 1792 SDGIGKISSEFSMKVASKCGLKDSPPSAFQIRYGGYKGVVAVDPTSSKKLSLRDSMCKYE 1613
SDGIGKIS+EF+ KVA KCG K PSAFQIRY GYKGVVAVDPTS+KKLSLR SM KYE
Sbjct: 538 SDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSTKKLSLRMSMFKYE 597
Query: 1612 SELMKLDVLAWSKYQPCFLNRQLISLLSTLGIPDEVFEKKQREAVRQLDDILRDPLKAQE 1433
SE KLDVLA SKYQPCFLNRQLI+LLSTLG+PD FE+KQREAV QLD IL DPL+AQE
Sbjct: 598 SENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAILTDPLRAQE 657
Query: 1432 ALELMSPGENTNILKEMLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 1253
AL LMSPGENTNILKEML+CGY+PDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGR MM
Sbjct: 658 ALVLMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRLMM 717
Query: 1252 GCLDETRTLDYGQVFVQFSGAGYRQLFDEYSVFGSSGSRQRFIVEGRVVVAKNPCLHPGD 1073
GCLDETRTL++GQVFVQFSG+ +R L+D VF G Q +++EG VVVAKNPCLHPGD
Sbjct: 718 GCLDETRTLEHGQVFVQFSGSRFRNLYDSSDVFSERGRGQCYLIEGSVVVAKNPCLHPGD 777
Query: 1072 VRVLRAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDSELIPRKHDEPM 893
VR+L+AV+VPALHHMVDCVVFPQKG RPHP ECSGSDLDGDIYFVCWD ELIP + PM
Sbjct: 778 VRILKAVDVPALHHMVDCVVFPQKGPRPHPKECSGSDLDGDIYFVCWDPELIPSQQISPM 837
Query: 892 DYAPAPSTQLDHDVRIEEVEEYFTNYIVNDSLGIISNAHTVFADREPLKARSDPCLQLAE 713
DY P P+ QLDHDV IEEVEEYFTNYIVNDSLGII+NAHT FAD+E LKA S+PCL+LA
Sbjct: 838 DYTPEPTLQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTAFADKESLKAMSEPCLELAR 897
Query: 712 KFSIAVDFPKTGVPADIPRHLYVKEYPDFMEKPDKPTYESNNVIGKLFREVKDISPQTSC 533
KFSIAVDFPKTGVPA+IP +L V+EYPDFMEKPDKP+YES NVIGKLFREVKDI+P+TS
Sbjct: 898 KFSIAVDFPKTGVPAEIPSNLRVREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSS 957
Query: 532 IRLFTKEVARRSYDPDMEVDGFEDHIHDAFYHKGNYDYKLGNLMDYYGIKTEAEILSGGI 353
IR FT +VAR+ YDPDMEVDGFED+I DAFY+K NYDYKLGNLM+YYGIKTEAE+LSG
Sbjct: 958 IRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSF 1017
Query: 352 LKMSKSFTKRRDAEAIGLAVRSLRKEARAWFKEKRSGLDYE-DDAYAKASAWYHVTYHHS 176
+KMSKSFTK+RDAEAIG+AVRSLRKEAR+WF EK SGLD + DD AKASAWYHVTYHH+
Sbjct: 1018 MKMSKSFTKKRDAEAIGMAVRSLRKEARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHN 1077
Query: 175 YWGCYNEDMNRDHFLSFPWCVYDKLIEIKKNKTSIRNA 62
YWGCYNE MNRDHFLSFPWC+YDKLI+IKKN IR +
Sbjct: 1078 YWGCYNEGMNRDHFLSFPWCLYDKLIQIKKNSARIRRS 1115
>ref|XP_012072320.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Jatropha
curcas]
Length = 1144
Score = 1662 bits (4305), Expect = 0.0
Identities = 809/1115 (72%), Positives = 940/1115 (84%), Gaps = 1/1115 (0%)
Frame = -3
Query: 3421 LRFMGKTIQVYGFPSGVTAEAVKNLLQSHTGEETIYAIKVRLPKNGALRAYAIVQFTTDA 3242
+ MGKTIQVYGFPS VT + VK L+SH+GE T++A+K+R KN R YAIVQF T
Sbjct: 15 ISLMGKTIQVYGFPSHVTVDEVKKFLESHSGEGTVFAMKIRETKNRGRRKYAIVQFQTAR 74
Query: 3241 SAVTIISLANSRRLWYGRSYLNARPMENDIVPRPRTFLYTMESIKLSFGCKISKEKFAVL 3062
A IISL N +RL YG SYL ARP++NDIVP+PRTFL++M+ I L FGC+ISKEKF+VL
Sbjct: 75 DAELIISLTN-KRLRYGTSYLKARPLDNDIVPKPRTFLHSMDHITLHFGCQISKEKFSVL 133
Query: 3061 WRGVNVTVNFGFGMRKINFLLSHLETEYRLELAYENIWEIELHSPHGQTAKYLLIQLLGA 2882
W G NV+VNFGFGMRK+ F LSH + Y+LEL+YEN+W++ELH P G++ KYLLIQL GA
Sbjct: 134 WTGTNVSVNFGFGMRKLQFFLSHGQMGYKLELSYENVWQMELHCPRGRSVKYLLIQLYGA 193
Query: 2881 PRIFKKDVCSSDLVYESLLFNFFMEIPDDQWVRARDFTPSNCIGQSTGLCLELPYGLELP 2702
PRIF+K++ + + V+E LFN + PD+QWVR DFTP IG S+GLCLE P + +P
Sbjct: 194 PRIFEKEIATFN-VFEIPLFNDLKDTPDEQWVRTIDFTPFCLIGHSSGLCLEFPSSINVP 252
Query: 2701 DFQENFAYYRESRGNFTLETGFAYSKSLDLVPIVGPPAGITLPYEILFKINLLVQNGCVP 2522
FQENF+YY+ES G F LE G A+S++LDLVPIVGPP+G+ LP+EILF++NLLVQNGC+P
Sbjct: 253 KFQENFSYYKESEGIFVLENGNAFSRNLDLVPIVGPPSGVDLPFEILFRVNLLVQNGCLP 312
Query: 2521 GPLLDSNFYRLVDPCRTNVSMSCIEHALDKLYHFKECCYEPSRWLTEQYTKYITSGRMPR 2342
G LDS+FY LVDP N+ CIEHAL KL+H KECCY+PSRWL EQY KY+ S PR
Sbjct: 313 GSALDSSFYELVDPSTMNID--CIEHALKKLFHLKECCYDPSRWLDEQYRKYLKSKCHPR 370
Query: 2341 LPAINLDDGLVYVHRLQVTPSKVYFSGPEINVSNRVLRHFRGYIDNFLRVSFIDEDLDKI 2162
P+I+L GLVY+ R+Q+TP KVYF GPE+NVSNRV+RH+ I+NFLRVSF+DE+L+KI
Sbjct: 371 SPSISLGSGLVYMRRVQITPCKVYFCGPEVNVSNRVIRHYSKDINNFLRVSFVDEELEKI 430
Query: 2161 HSNDLSPRGSSATEIRRTEIYERILSTLHDGIVIGDKKFEFLAFSSSQLRESSTWMFAST 1982
+S DL PR SS RRT IY+RILSTL +GIVIG+K+FEFLAFSSSQLRE+S WMFAS
Sbjct: 431 YSTDLCPRASSGNGDRRTAIYKRILSTLQNGIVIGNKRFEFLAFSSSQLRENSCWMFASR 490
Query: 1981 DGLTAAVIREWMGNFRQIRNVAKYAARLGQSFSSSTETLNVGKNEIEIIPDVKIESGNTT 1802
DGLTAA IREWMGNFRQIRNVAKYAARLGQSF SSTETL+V +NEIEI+PDV++E G T
Sbjct: 491 DGLTAADIREWMGNFRQIRNVAKYAARLGQSFGSSTETLSVSRNEIEILPDVEVERGRTK 550
Query: 1801 YVFSDGIGKISSEFSMKVASKCGLKDSPPSAFQIRYGGYKGVVAVDPTSSKKLSLRDSMC 1622
Y+FSDGIGKIS+EF+ +VA KCG + PSAFQIRYGGYKGVVAVDPTSSKKLSLR+SMC
Sbjct: 551 YLFSDGIGKISAEFARRVALKCGHQGFYPSAFQIRYGGYKGVVAVDPTSSKKLSLRESMC 610
Query: 1621 KYESELMKLDVLAWSKYQPCFLNRQLISLLSTLGIPDEVFEKKQREAVRQLDDILRDPLK 1442
KYESE KLDVL +SKYQPCFLNRQ+I+LLSTLG+ D +FEKKQREAV QLD IL + L+
Sbjct: 611 KYESENTKLDVLGYSKYQPCFLNRQMITLLSTLGVADHIFEKKQREAVDQLDAILTNSLR 670
Query: 1441 AQEALELMSPGENTNILKEMLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGR 1262
AQEAL+LMSPGE TNIL EML+CGY+PDAEPFLSMMLQ FRASKLL+LRTK+RIF+PNGR
Sbjct: 671 AQEALDLMSPGETTNILNEMLLCGYQPDAEPFLSMMLQMFRASKLLDLRTKSRIFVPNGR 730
Query: 1261 SMMGCLDETRTLDYGQVFVQFSGAGYRQLFDEYSVFGSSGSRQRFIVEGRVVVAKNPCLH 1082
SMMGCLDETR L+YGQVFVQFSG+ ++Q++D ++ G GS F++EG V+VAKNPCLH
Sbjct: 731 SMMGCLDETRNLEYGQVFVQFSGSKHKQVYDSSTMVGGIGSGNGFVIEGMVIVAKNPCLH 790
Query: 1081 PGDVRVLRAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDSELIPRKHD 902
PGD+RVLRAVNVP LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD +LIPR+
Sbjct: 791 PGDIRVLRAVNVPDLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPRQQL 850
Query: 901 EPMDYAPAPSTQLDHDVRIEEVEEYFTNYIVNDSLGIISNAHTVFADREPLKARSDPCLQ 722
PMDY P PS QLDHDV I+EV EYFTNYI+NDSLGIISNAHTVFADREP KA S PCL+
Sbjct: 851 PPMDYTPQPSLQLDHDVTIQEVAEYFTNYILNDSLGIISNAHTVFADREPEKAMSKPCLE 910
Query: 721 LAEKFSIAVDFPKTGVPADIPRHLYVKEYPDFMEKPDKPTYESNNVIGKLFREVKDISPQ 542
LA KFSIAVDFPKTGVPA+I HL VKEYPDFMEKPDKPTYES NVIGKLFR V+DI+P
Sbjct: 911 LASKFSIAVDFPKTGVPAEIHSHLRVKEYPDFMEKPDKPTYESQNVIGKLFRAVRDIAPH 970
Query: 541 TSCIRLFTKEVARRSYDPDMEVDGFEDHIHDAFYHKGNYDYKLGNLMDYYGIKTEAEILS 362
TS I+ FT EVAR+ YDPDMEVDGFED+I DAFY+K NYDYKLGN MDYYGI+TEAEIL
Sbjct: 971 TSSIKSFTLEVARQCYDPDMEVDGFEDYIDDAFYYKTNYDYKLGNHMDYYGIRTEAEILG 1030
Query: 361 GGILKMSKSFTKRRDAEAIGLAVRSLRKEARAWFKEKRSGLD-YEDDAYAKASAWYHVTY 185
G I+KMSK+FTK+RDAEAIGLAVRSLRKEAR+WFKE+ SGLD EDD YAKASAW++VTY
Sbjct: 1031 GSIMKMSKAFTKKRDAEAIGLAVRSLRKEARSWFKERGSGLDSEEDDVYAKASAWHYVTY 1090
Query: 184 HHSYWGCYNEDMNRDHFLSFPWCVYDKLIEIKKNK 80
H SYWG YNE MNRDHFLSFPWCVYDKLI+IK+ +
Sbjct: 1091 HPSYWGRYNEGMNRDHFLSFPWCVYDKLIQIKRKR 1125
>ref|XP_012072321.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X2 [Jatropha
curcas] gi|802596568|ref|XP_012072322.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X2 [Jatropha
curcas] gi|802596570|ref|XP_012072324.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X2 [Jatropha
curcas]
Length = 1127
Score = 1662 bits (4304), Expect = 0.0
Identities = 809/1112 (72%), Positives = 939/1112 (84%), Gaps = 1/1112 (0%)
Frame = -3
Query: 3412 MGKTIQVYGFPSGVTAEAVKNLLQSHTGEETIYAIKVRLPKNGALRAYAIVQFTTDASAV 3233
MGKTIQVYGFPS VT + VK L+SH+GE T++A+K+R KN R YAIVQF T A
Sbjct: 1 MGKTIQVYGFPSHVTVDEVKKFLESHSGEGTVFAMKIRETKNRGRRKYAIVQFQTARDAE 60
Query: 3232 TIISLANSRRLWYGRSYLNARPMENDIVPRPRTFLYTMESIKLSFGCKISKEKFAVLWRG 3053
IISL N +RL YG SYL ARP++NDIVP+PRTFL++M+ I L FGC+ISKEKF+VLW G
Sbjct: 61 LIISLTN-KRLRYGTSYLKARPLDNDIVPKPRTFLHSMDHITLHFGCQISKEKFSVLWTG 119
Query: 3052 VNVTVNFGFGMRKINFLLSHLETEYRLELAYENIWEIELHSPHGQTAKYLLIQLLGAPRI 2873
NV+VNFGFGMRK+ F LSH + Y+LEL+YEN+W++ELH P G++ KYLLIQL GAPRI
Sbjct: 120 TNVSVNFGFGMRKLQFFLSHGQMGYKLELSYENVWQMELHCPRGRSVKYLLIQLYGAPRI 179
Query: 2872 FKKDVCSSDLVYESLLFNFFMEIPDDQWVRARDFTPSNCIGQSTGLCLELPYGLELPDFQ 2693
F+K++ + + V+E LFN + PD+QWVR DFTP IG S+GLCLE P + +P FQ
Sbjct: 180 FEKEIATFN-VFEIPLFNDLKDTPDEQWVRTIDFTPFCLIGHSSGLCLEFPSSINVPKFQ 238
Query: 2692 ENFAYYRESRGNFTLETGFAYSKSLDLVPIVGPPAGITLPYEILFKINLLVQNGCVPGPL 2513
ENF+YY+ES G F LE G A+S++LDLVPIVGPP+G+ LP+EILF++NLLVQNGC+PG
Sbjct: 239 ENFSYYKESEGIFVLENGNAFSRNLDLVPIVGPPSGVDLPFEILFRVNLLVQNGCLPGSA 298
Query: 2512 LDSNFYRLVDPCRTNVSMSCIEHALDKLYHFKECCYEPSRWLTEQYTKYITSGRMPRLPA 2333
LDS+FY LVDP N+ CIEHAL KL+H KECCY+PSRWL EQY KY+ S PR P+
Sbjct: 299 LDSSFYELVDPSTMNID--CIEHALKKLFHLKECCYDPSRWLDEQYRKYLKSKCHPRSPS 356
Query: 2332 INLDDGLVYVHRLQVTPSKVYFSGPEINVSNRVLRHFRGYIDNFLRVSFIDEDLDKIHSN 2153
I+L GLVY+ R+Q+TP KVYF GPE+NVSNRV+RH+ I+NFLRVSF+DE+L+KI+S
Sbjct: 357 ISLGSGLVYMRRVQITPCKVYFCGPEVNVSNRVIRHYSKDINNFLRVSFVDEELEKIYST 416
Query: 2152 DLSPRGSSATEIRRTEIYERILSTLHDGIVIGDKKFEFLAFSSSQLRESSTWMFASTDGL 1973
DL PR SS RRT IY+RILSTL +GIVIG+K+FEFLAFSSSQLRE+S WMFAS DGL
Sbjct: 417 DLCPRASSGNGDRRTAIYKRILSTLQNGIVIGNKRFEFLAFSSSQLRENSCWMFASRDGL 476
Query: 1972 TAAVIREWMGNFRQIRNVAKYAARLGQSFSSSTETLNVGKNEIEIIPDVKIESGNTTYVF 1793
TAA IREWMGNFRQIRNVAKYAARLGQSF SSTETL+V +NEIEI+PDV++E G T Y+F
Sbjct: 477 TAADIREWMGNFRQIRNVAKYAARLGQSFGSSTETLSVSRNEIEILPDVEVERGRTKYLF 536
Query: 1792 SDGIGKISSEFSMKVASKCGLKDSPPSAFQIRYGGYKGVVAVDPTSSKKLSLRDSMCKYE 1613
SDGIGKIS+EF+ +VA KCG + PSAFQIRYGGYKGVVAVDPTSSKKLSLR+SMCKYE
Sbjct: 537 SDGIGKISAEFARRVALKCGHQGFYPSAFQIRYGGYKGVVAVDPTSSKKLSLRESMCKYE 596
Query: 1612 SELMKLDVLAWSKYQPCFLNRQLISLLSTLGIPDEVFEKKQREAVRQLDDILRDPLKAQE 1433
SE KLDVL +SKYQPCFLNRQ+I+LLSTLG+ D +FEKKQREAV QLD IL + L+AQE
Sbjct: 597 SENTKLDVLGYSKYQPCFLNRQMITLLSTLGVADHIFEKKQREAVDQLDAILTNSLRAQE 656
Query: 1432 ALELMSPGENTNILKEMLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 1253
AL+LMSPGE TNIL EML+CGY+PDAEPFLSMMLQ FRASKLL+LRTK+RIF+PNGRSMM
Sbjct: 657 ALDLMSPGETTNILNEMLLCGYQPDAEPFLSMMLQMFRASKLLDLRTKSRIFVPNGRSMM 716
Query: 1252 GCLDETRTLDYGQVFVQFSGAGYRQLFDEYSVFGSSGSRQRFIVEGRVVVAKNPCLHPGD 1073
GCLDETR L+YGQVFVQFSG+ ++Q++D ++ G GS F++EG V+VAKNPCLHPGD
Sbjct: 717 GCLDETRNLEYGQVFVQFSGSKHKQVYDSSTMVGGIGSGNGFVIEGMVIVAKNPCLHPGD 776
Query: 1072 VRVLRAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDSELIPRKHDEPM 893
+RVLRAVNVP LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD +LIPR+ PM
Sbjct: 777 IRVLRAVNVPDLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPRQQLPPM 836
Query: 892 DYAPAPSTQLDHDVRIEEVEEYFTNYIVNDSLGIISNAHTVFADREPLKARSDPCLQLAE 713
DY P PS QLDHDV I+EV EYFTNYI+NDSLGIISNAHTVFADREP KA S PCL+LA
Sbjct: 837 DYTPQPSLQLDHDVTIQEVAEYFTNYILNDSLGIISNAHTVFADREPEKAMSKPCLELAS 896
Query: 712 KFSIAVDFPKTGVPADIPRHLYVKEYPDFMEKPDKPTYESNNVIGKLFREVKDISPQTSC 533
KFSIAVDFPKTGVPA+I HL VKEYPDFMEKPDKPTYES NVIGKLFR V+DI+P TS
Sbjct: 897 KFSIAVDFPKTGVPAEIHSHLRVKEYPDFMEKPDKPTYESQNVIGKLFRAVRDIAPHTSS 956
Query: 532 IRLFTKEVARRSYDPDMEVDGFEDHIHDAFYHKGNYDYKLGNLMDYYGIKTEAEILSGGI 353
I+ FT EVAR+ YDPDMEVDGFED+I DAFY+K NYDYKLGN MDYYGI+TEAEIL G I
Sbjct: 957 IKSFTLEVARQCYDPDMEVDGFEDYIDDAFYYKTNYDYKLGNHMDYYGIRTEAEILGGSI 1016
Query: 352 LKMSKSFTKRRDAEAIGLAVRSLRKEARAWFKEKRSGLD-YEDDAYAKASAWYHVTYHHS 176
+KMSK+FTK+RDAEAIGLAVRSLRKEAR+WFKE+ SGLD EDD YAKASAW++VTYH S
Sbjct: 1017 MKMSKAFTKKRDAEAIGLAVRSLRKEARSWFKERGSGLDSEEDDVYAKASAWHYVTYHPS 1076
Query: 175 YWGCYNEDMNRDHFLSFPWCVYDKLIEIKKNK 80
YWG YNE MNRDHFLSFPWCVYDKLI+IK+ +
Sbjct: 1077 YWGRYNEGMNRDHFLSFPWCVYDKLIQIKRKR 1108
>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
family protein [Populus trichocarpa]
Length = 1133
Score = 1662 bits (4303), Expect = 0.0
Identities = 809/1119 (72%), Positives = 938/1119 (83%), Gaps = 2/1119 (0%)
Frame = -3
Query: 3412 MGKTIQVYGFPSGVTAEAVKNLLQSHTGEETIYAIKVRLPKNGALRAYAIVQFTTDASAV 3233
M KT++V GFPS TA AV+ L+SHTG T+ A+K+R + G R YAIVQFTT +A
Sbjct: 1 MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGARKYAIVQFTTTRAAE 60
Query: 3232 TIISLANSRRLWYGRSYLNARPMENDIVPRPRTFLYTMESIKLSFGCKISKEKFAVLWRG 3053
IISLAN R LWYG SYLNARPM+ DI+P+PR+FL+TMES+ L FG + SKEKF+ +W G
Sbjct: 61 QIISLANPR-LWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWSG 119
Query: 3052 VNVTVNFGFGMRKINFLLSHLETEYRLELAYENIWEIELHSPHGQTAKYLLIQLLGAPRI 2873
NV+VNFG GMRK++F LSH EY+L L +ENIW+IELH P GQT KYLLIQL GAPRI
Sbjct: 120 NNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPRI 179
Query: 2872 FKKDVCSSDLVYESLLFNFFMEIPDDQWVRARDFTPSNCIGQSTGLCLELPYGLELPDFQ 2693
+++DV SS V+E L N+F ++PD+QWVR DFTPS IG S+ LCLELP L+LP+F
Sbjct: 180 YERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNFN 239
Query: 2692 ENFAYYRESRGNFTLETGFAYSKSLDLVPIVGPPAGITLPYEILFKINLLVQNGCVPGPL 2513
ENF YY+E+ G F LE+G +S++ DLVPIVGP +G+ LPY ILF++NLLVQNGC+ G +
Sbjct: 240 ENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGSM 299
Query: 2512 LDSNFYRLVDPCRTNVSMSCIEHALDKLYHFKECCYEPSRWLTEQYTKYITSGRMPRLPA 2333
LD FYRLVDP R V CIE+AL+KLYH KECCYEPS+W EQY KY+TSG PR P
Sbjct: 300 LDDIFYRLVDPNRMPVR--CIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPV 357
Query: 2332 INLDDGLVYVHRLQVTPSKVYFSGPEINVSNRVLRHFRGYIDNFLRVSFIDEDLDKIHSN 2153
++LD GLVYV+++Q+TP KV+F GPE+NVSNRVLR +R IDNFLRVSF+DE+L+KIHS
Sbjct: 358 LSLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHST 417
Query: 2152 DLSPRGSSATEIRRTEIYERILSTLHDGIVIGDKKFEFLAFSSSQLRESSTWMFASTDGL 1973
D+SPR SS E+RRT IY RILSTL +GIVIGDKKFEFLAFSSSQLRE+S WMFAS GL
Sbjct: 418 DVSPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGL 477
Query: 1972 TAAVIREWMGNFRQIRNVAKYAARLGQSFSSSTETLNVGKNEIEIIPDVKIESGNTTYVF 1793
TAA IR WMG+F +IRNVA+YAARLGQSF SSTETL+V +EIEIIPD+++ G T Y+F
Sbjct: 478 TAADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYLF 537
Query: 1792 SDGIGKISSEFSMKVASKCGLKDSPPSAFQIRYGGYKGVVAVDPTSSKKLSLRDSMCKYE 1613
SDGIGKIS+EF+ KVA KCG K PSAFQIRY GYKGVVAVDPTSSKKLSLR SM KYE
Sbjct: 538 SDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYE 597
Query: 1612 SELMKLDVLAWSKYQPCFLNRQLISLLSTLGIPDEVFEKKQREAVRQLDDILRDPLKAQE 1433
SE KLDVLA SKYQPCFLNRQLI+LLSTLG+PD FE+KQREAV QLD +L DPL+AQE
Sbjct: 598 SENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQE 657
Query: 1432 ALELMSPGENTNILKEMLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 1253
ALELMSPGENTNILKEML+CGY+PDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM
Sbjct: 658 ALELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 717
Query: 1252 GCLDETRTLDYGQVFVQFSGAGYRQLFDEYSVFGSSGSRQRFIVEGRVVVAKNPCLHPGD 1073
GCLDETRTL++GQVFV+FSG+ +R L+D +F G Q ++++G VVVAKNPCLHPGD
Sbjct: 718 GCLDETRTLEHGQVFVKFSGSRFRNLYDSSDMFSERGRGQCYLIKGSVVVAKNPCLHPGD 777
Query: 1072 VRVLRAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDSELIPRKHDEPM 893
+R+L+AV+VPALHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD ELIP + PM
Sbjct: 778 LRILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQISPM 837
Query: 892 DYAPAPSTQLDHDVRIEEVEEYFTNYIVNDSLGIISNAHTVFADREPLKARSDPCLQLAE 713
DY P P QLDHDV IEEVEEYFTNYIVNDSLG+I+NAHT AD+E LKA S+PC++LA
Sbjct: 838 DYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVELAR 897
Query: 712 KFSIAVDFPKTGVPADIPRHLYVKEYPDFMEKPDKPTYESNNVIGKLFREVKDISPQTSC 533
KFSIAVDFPKTGVPA+IP +L +EYPDFMEKPDKP+YES NVIGKLFREVKDI+P+TS
Sbjct: 898 KFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSS 957
Query: 532 IRLFTKEVARRSYDPDMEVDGFEDHIHDAFYHKGNYDYKLGNLMDYYGIKTEAEILSGGI 353
IR FT +VAR+ YDPDMEVDGFED+I DAFY+K NYDYKLGNLM+YYGIKTEAE+LSG
Sbjct: 958 IRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSF 1017
Query: 352 LKMSKSFTKRRDAEAIGLAVRSLRKEARAWFKEKRSGLDYE-DDAYAKASAWYHVTYHHS 176
+KMSKSFTK+RDAEAIG+AVRSL+KEAR+WF EK SGLD + DD AKASAWYHVTYHH+
Sbjct: 1018 MKMSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHN 1077
Query: 175 YWGCYNEDMNRDHFLSFPWCVYDKLIEIK-KNKTSIRNA 62
YWGCYNE MNRDHFLSFPWCVYDKLI+IK +N IR +
Sbjct: 1078 YWGCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSARIRRS 1116
>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1|
RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
Length = 1109
Score = 1654 bits (4282), Expect = 0.0
Identities = 828/1118 (74%), Positives = 931/1118 (83%), Gaps = 1/1118 (0%)
Frame = -3
Query: 3412 MGKTIQVYGFPSGVTAEAVKNLLQSHTGEETIYAIKVRLPKNGALRAYAIVQFTTDASAV 3233
MGKTIQV FPS V AE VK L+ +TG+ET+YA+K+R KNG RAYAIVQFT A
Sbjct: 1 MGKTIQVSRFPSNVHAEEVKTFLELYTGKETVYALKIRQQKNGG-RAYAIVQFTKSTDAE 59
Query: 3232 TIISLANSRRLWYGRSYLNARPMENDIVPRPRTFLYTMESIKLSFGCKISKEKFAVLWRG 3053
II L N +RL+YG SYL AR MENDIVP+PRTFL+TME + L FGC++S EKF VLW
Sbjct: 60 LIIRLTN-QRLYYGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYVLWEE 118
Query: 3052 VNVTVNFGFGMRKINFLLSHLETEYRLELAYENIWEIELHSPHGQTAKYLLIQLLGAPRI 2873
V+VTVNFG GMRK+ FLLSH EYRL+L YENIW+IELH P QT+KYLLIQL GAPRI
Sbjct: 119 VDVTVNFGMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRPRNQTSKYLLIQLFGAPRI 178
Query: 2872 FKKDVCSSDLVYESLLFNFFMEIPDDQWVRARDFTPSNCIGQSTGLCLELPYGLELPDFQ 2693
++KDV SS LV+E+ L N+FM++PDDQWVR DFT S+CIGQS+ LCLELPY L+LP+F+
Sbjct: 179 YEKDVRSSGLVFENPLLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYLQLPNFR 238
Query: 2692 ENFAYYRESRGNFTLETGFAYSKSLDLVPIVGPPAGITLPYEILFKINLLVQNGCVPGPL 2513
ENFAYY+ES G F LE+G +YS++L+LVPIVGP GI LPYEILFKINLLVQNGC+PGP
Sbjct: 239 ENFAYYKESEGKFVLESGSSYSRNLNLVPIVGPSLGIDLPYEILFKINLLVQNGCIPGPA 298
Query: 2512 LDSNFYRLVDPCRTNVSMSCIEHALDKLYHFKECCYEPSRWLTEQYTKYITSGRMPRLPA 2333
LD+NFYRLV+PCR + I+HAL+KLY+ KECC+EPS+WL EQY YI S + P P
Sbjct: 299 LDANFYRLVNPCR--IDKVYIDHALEKLYYLKECCFEPSKWLLEQYKGYIASKKNPGSPV 356
Query: 2332 INLDDGLVYVHRLQVTPSKVYFSGPEINVSNRVLRHFRGYIDNFLRVSFIDEDLDKIHSN 2153
I+LDDGLV V R+Q+TPS+VYF GPEINVSNRVLRHF IDNFLR++F+DE+L+KIHS
Sbjct: 357 ISLDDGLVNVRRVQITPSRVYFCGPEINVSNRVLRHFHDDIDNFLRITFVDEELEKIHST 416
Query: 2152 DLSPRGSSATEIRRTEIYERILSTLHDGIVIGDKKFEFLAFSSSQLRESSTWMFASTDGL 1973
DL R R TEIY RILSTL +GIVIGDK+FEFLAFSSSQLRE+S WMFAS +GL
Sbjct: 417 DLLTRN------RITEIYGRILSTLKNGIVIGDKQFEFLAFSSSQLRENSAWMFASREGL 470
Query: 1972 TAAVIREWMGNFRQIRNVAKYAARLGQSFSSSTETLNVGKNEIEIIPDVKIESGNTTYVF 1793
TAA IR WMG F +IRNVAKYAARLGQSFSSSTETL+V K+EIEII DV+I+ YVF
Sbjct: 471 TAADIRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEIIDDVEIKRDGINYVF 530
Query: 1792 SDGIGKISSEFSMKVASKCGLKDSPPSAFQIRYGGYKGVVAVDPTSSKKLSLRDSMCKYE 1613
SDGIGKIS++F+ KVA+KC L PSAFQIR GG+KGVVAVDPTSSKKLSLR SM KYE
Sbjct: 531 SDGIGKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKKLSLRGSMSKYE 590
Query: 1612 SELMKLDVLAWSKYQPCFLNRQLISLLSTLGIPDEVFEKKQREAVRQLDDILRDPLKAQE 1433
SE KLDVLAWSKYQPCFLNRQLI+LLSTLG+PD FE+KQRE V QL+ IL DPLKAQE
Sbjct: 591 SENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVVDQLNAILTDPLKAQE 650
Query: 1432 ALELMSPGENTNILKEMLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 1253
ALELMSPGENTNILKEML+CGY+PDAEPFLSMMLQTFRASKLLELRTK+RIF+ NGRSMM
Sbjct: 651 ALELMSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKSRIFVANGRSMM 710
Query: 1252 GCLDETRTLDYGQVFVQFSGAGYRQLFDEYSVFGSSGSRQRFIVEGRVVVAKNPCLHPGD 1073
GCLDETRTLDYGQVFVQ SG S S QRFIV+G+VVVAKNPCLHPGD
Sbjct: 711 GCLDETRTLDYGQVFVQVSG---------------SRSEQRFIVQGKVVVAKNPCLHPGD 755
Query: 1072 VRVLRAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDSELIPRKHDEPM 893
VRVL AVNVP LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD ELIP K PM
Sbjct: 756 VRVLTAVNVPDLHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPSKQIPPM 815
Query: 892 DYAPAPSTQLDHDVRIEEVEEYFTNYIVNDSLGIISNAHTVFADREPLKARSDPCLQLAE 713
DY+PAP+ L+H+V IEEVEEYFTNYIVNDSLGII+NAHTVFADREP KA S C LA+
Sbjct: 816 DYSPAPTKPLEHEVTIEEVEEYFTNYIVNDSLGIIANAHTVFADREPRKAMSSECKWLAK 875
Query: 712 KFSIAVDFPKTGVPADIPRHLYVKEYPDFMEKPDKPTYESNNVIGKLFREVKDISPQTSC 533
FSIAVDFPKTGVPA+IP+ L VKEYPDFMEKPDKPTY+S NVIGKLFREVKD++P
Sbjct: 876 LFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPTYQSYNVIGKLFREVKDLAPNECF 935
Query: 532 IRLFTKEVARRSYDPDMEVDGFEDHIHDAFYHKGNYDYKLGNLMDYYGIKTEAEILSGGI 353
IR T+E R YDPDMEVDG+ED++ DAFYHK NYDYKLGNLM+YYGIKTEAEILSGGI
Sbjct: 936 IRSLTRERLERFYDPDMEVDGYEDYVDDAFYHKSNYDYKLGNLMEYYGIKTEAEILSGGI 995
Query: 352 LKMSKSFTKRRDAEAIGLAVRSLRKEARAWFKEKRSGLDYE-DDAYAKASAWYHVTYHHS 176
+KMS+SFTK+RDAEAIG+AVRSLRKEAR+WF EK +GLD E DD YAKASAWYHVTYH S
Sbjct: 996 MKMSRSFTKQRDAEAIGVAVRSLRKEARSWFNEKGNGLDSEADDLYAKASAWYHVTYHPS 1055
Query: 175 YWGCYNEDMNRDHFLSFPWCVYDKLIEIKKNKTSIRNA 62
YWG YNE MNR+HFLSFPWCVYDKLI IKK TS RN+
Sbjct: 1056 YWGLYNEGMNRNHFLSFPWCVYDKLILIKKKVTSRRNS 1093
>ref|XP_012072326.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Jatropha
curcas]
Length = 1150
Score = 1650 bits (4274), Expect = 0.0
Identities = 801/1115 (71%), Positives = 934/1115 (83%), Gaps = 1/1115 (0%)
Frame = -3
Query: 3421 LRFMGKTIQVYGFPSGVTAEAVKNLLQSHTGEETIYAIKVRLPKNGALRAYAIVQFTTDA 3242
+ MGKTI VYGFP VT + VK L+SH+G+ T++A+K+R KNG R YAIVQF T
Sbjct: 22 IALMGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTAR 81
Query: 3241 SAVTIISLANSRRLWYGRSYLNARPMENDIVPRPRTFLYTMESIKLSFGCKISKEKFAVL 3062
A IISL ++R+ YG SYL AR + DIVP PRTFL++M+ I L FGC+ISKEKF+VL
Sbjct: 82 DAELIISL--NKRIRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVL 139
Query: 3061 WRGVNVTVNFGFGMRKINFLLSHLETEYRLELAYENIWEIELHSPHGQTAKYLLIQLLGA 2882
W G NV+VNFGFG+RK+ F LSH + +Y+L+L+YEN+W+IELH P G++ KYLLIQL GA
Sbjct: 140 WTGTNVSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCPRGRSVKYLLIQLYGA 199
Query: 2881 PRIFKKDVCSSDLVYESLLFNFFMEIPDDQWVRARDFTPSNCIGQSTGLCLELPYGLELP 2702
PRIF+K++ SS+ V+ES LFN+F + PD+QWVR DFTP IG S+GLCLE P + +P
Sbjct: 200 PRIFEKEIASSN-VFESPLFNYFKDTPDEQWVRTIDFTPFCLIGHSSGLCLEFPSSINVP 258
Query: 2701 DFQENFAYYRESRGNFTLETGFAYSKSLDLVPIVGPPAGITLPYEILFKINLLVQNGCVP 2522
FQENF+YY+ES F LE G A+S +LDLVPIVGPP+G+ LP+EILF++NLLVQ+GC+P
Sbjct: 259 KFQENFSYYKESEAIFVLENGNAFSCNLDLVPIVGPPSGVDLPFEILFRVNLLVQHGCLP 318
Query: 2521 GPLLDSNFYRLVDPCRTNVSMSCIEHALDKLYHFKECCYEPSRWLTEQYTKYITSGRMPR 2342
G LDS+FY+LVDP R N+ CIEHAL+KL+H KECCYEPS WL EQY KY+TS +PR
Sbjct: 319 GSALDSSFYKLVDPSRMNID--CIEHALEKLFHLKECCYEPSMWLNEQYRKYLTSKYLPR 376
Query: 2341 LPAINLDDGLVYVHRLQVTPSKVYFSGPEINVSNRVLRHFRGYIDNFLRVSFIDEDLDKI 2162
P+I+LD GL YV R Q+TP K YF GPE+NVSNRV+R + I+NFLRVSF+DE+L KI
Sbjct: 377 SPSISLDTGLEYVRRGQITPCKAYFCGPEVNVSNRVIRRYSKDINNFLRVSFVDEELGKI 436
Query: 2161 HSNDLSPRGSSATEIRRTEIYERILSTLHDGIVIGDKKFEFLAFSSSQLRESSTWMFAST 1982
HS DLSPR SS RRT IY RILSTL +GIVIG+K+FEFLAFSSSQLRE+S WMFAS
Sbjct: 437 HSTDLSPRASSGNGDRRTAIYNRILSTLQNGIVIGNKRFEFLAFSSSQLRENSCWMFASR 496
Query: 1981 DGLTAAVIREWMGNFRQIRNVAKYAARLGQSFSSSTETLNVGKNEIEIIPDVKIESGNTT 1802
DGLTAA IREWMGNFRQIRNVAKYAARLGQSF SSTETL+V +N+IEI+PD++ E G T
Sbjct: 497 DGLTAADIREWMGNFRQIRNVAKYAARLGQSFGSSTETLSVRRNQIEILPDIEAERGRTK 556
Query: 1801 YVFSDGIGKISSEFSMKVASKCGLKDSPPSAFQIRYGGYKGVVAVDPTSSKKLSLRDSMC 1622
Y+FSDGIGKIS+EF+ +VA KCG + PSAFQIRYGGYKGVVAVDPTSSKKLSLR SMC
Sbjct: 557 YLFSDGIGKISAEFARRVALKCGHQGFYPSAFQIRYGGYKGVVAVDPTSSKKLSLRKSMC 616
Query: 1621 KYESELMKLDVLAWSKYQPCFLNRQLISLLSTLGIPDEVFEKKQREAVRQLDDILRDPLK 1442
KYESE KLDVL +SKYQPCFLNRQ+I+LLSTLG+PD +FEKKQREAV QLD IL + L+
Sbjct: 617 KYESENTKLDVLGYSKYQPCFLNRQMITLLSTLGVPDHIFEKKQREAVDQLDAILTNSLR 676
Query: 1441 AQEALELMSPGENTNILKEMLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGR 1262
AQEAL+LMSPGE TNIL EML+CGY+PDAEPFL+MMLQ FRASKLL++RTK+RIF+PNGR
Sbjct: 677 AQEALDLMSPGETTNILNEMLLCGYQPDAEPFLAMMLQMFRASKLLDVRTKSRIFVPNGR 736
Query: 1261 SMMGCLDETRTLDYGQVFVQFSGAGYRQLFDEYSVFGSSGSRQRFIVEGRVVVAKNPCLH 1082
SMMGCLDETR L+YGQVFVQFSG+ ++Q++D ++FG GS RF++EG+V+VAKNPCLH
Sbjct: 737 SMMGCLDETRNLEYGQVFVQFSGSKHKQVYDSSTMFGGIGSGNRFVIEGQVIVAKNPCLH 796
Query: 1081 PGDVRVLRAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDSELIPRKHD 902
PGD+RVLRAVNVP LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD +LIPR
Sbjct: 797 PGDIRVLRAVNVPDLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPRLQI 856
Query: 901 EPMDYAPAPSTQLDHDVRIEEVEEYFTNYIVNDSLGIISNAHTVFADREPLKARSDPCLQ 722
PMDY P PS QLDHDV I+EV EYFTNYI+NDSLGIISNAHTVFADREP KA S PCL+
Sbjct: 857 PPMDYTPEPSLQLDHDVTIQEVAEYFTNYILNDSLGIISNAHTVFADREPAKAMSKPCLE 916
Query: 721 LAEKFSIAVDFPKTGVPADIPRHLYVKEYPDFMEKPDKPTYESNNVIGKLFREVKDISPQ 542
LA KFSIAVDFPKTGVPA+I HL VKEYPDFMEKPDKPTYES NVIGKLFR V+DI+P
Sbjct: 917 LASKFSIAVDFPKTGVPAEIHSHLRVKEYPDFMEKPDKPTYESQNVIGKLFRAVRDIAPH 976
Query: 541 TSCIRLFTKEVARRSYDPDMEVDGFEDHIHDAFYHKGNYDYKLGNLMDYYGIKTEAEILS 362
TS I+ FT EVAR+ YDPDMEVDGF+D+I DAF +K NYDYKLGN MDYYGI+TEAEIL
Sbjct: 977 TSSIKSFTLEVARQCYDPDMEVDGFKDYIDDAFDYKSNYDYKLGNHMDYYGIRTEAEILG 1036
Query: 361 GGILKMSKSFTKRRDAEAIGLAVRSLRKEARAWFKEKRSGLD-YEDDAYAKASAWYHVTY 185
G I+KMSK+FTK+RDAEAIGLAV SL KEAR+WF E SGLD EDD YAKASAWY+VTY
Sbjct: 1037 GSIMKMSKAFTKKRDAEAIGLAVSSLIKEARSWFNENGSGLDSEEDDVYAKASAWYYVTY 1096
Query: 184 HHSYWGCYNEDMNRDHFLSFPWCVYDKLIEIKKNK 80
H +YWG YNE MNRDHFLSFPWCVYDKLI+IK+ +
Sbjct: 1097 HPTYWGRYNEGMNRDHFLSFPWCVYDKLIQIKRKR 1131
>ref|XP_012072327.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X2 [Jatropha
curcas] gi|802596581|ref|XP_012072328.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X2 [Jatropha
curcas]
Length = 1126
Score = 1650 bits (4273), Expect = 0.0
Identities = 801/1112 (72%), Positives = 933/1112 (83%), Gaps = 1/1112 (0%)
Frame = -3
Query: 3412 MGKTIQVYGFPSGVTAEAVKNLLQSHTGEETIYAIKVRLPKNGALRAYAIVQFTTDASAV 3233
MGKTI VYGFP VT + VK L+SH+G+ T++A+K+R KNG R YAIVQF T A
Sbjct: 1 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 60
Query: 3232 TIISLANSRRLWYGRSYLNARPMENDIVPRPRTFLYTMESIKLSFGCKISKEKFAVLWRG 3053
IISL ++R+ YG SYL AR + DIVP PRTFL++M+ I L FGC+ISKEKF+VLW G
Sbjct: 61 LIISL--NKRIRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWTG 118
Query: 3052 VNVTVNFGFGMRKINFLLSHLETEYRLELAYENIWEIELHSPHGQTAKYLLIQLLGAPRI 2873
NV+VNFGFG+RK+ F LSH + +Y+L+L+YEN+W+IELH P G++ KYLLIQL GAPRI
Sbjct: 119 TNVSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCPRGRSVKYLLIQLYGAPRI 178
Query: 2872 FKKDVCSSDLVYESLLFNFFMEIPDDQWVRARDFTPSNCIGQSTGLCLELPYGLELPDFQ 2693
F+K++ SS+ V+ES LFN+F + PD+QWVR DFTP IG S+GLCLE P + +P FQ
Sbjct: 179 FEKEIASSN-VFESPLFNYFKDTPDEQWVRTIDFTPFCLIGHSSGLCLEFPSSINVPKFQ 237
Query: 2692 ENFAYYRESRGNFTLETGFAYSKSLDLVPIVGPPAGITLPYEILFKINLLVQNGCVPGPL 2513
ENF+YY+ES F LE G A+S +LDLVPIVGPP+G+ LP+EILF++NLLVQ+GC+PG
Sbjct: 238 ENFSYYKESEAIFVLENGNAFSCNLDLVPIVGPPSGVDLPFEILFRVNLLVQHGCLPGSA 297
Query: 2512 LDSNFYRLVDPCRTNVSMSCIEHALDKLYHFKECCYEPSRWLTEQYTKYITSGRMPRLPA 2333
LDS+FY+LVDP R N+ CIEHAL+KL+H KECCYEPS WL EQY KY+TS +PR P+
Sbjct: 298 LDSSFYKLVDPSRMNID--CIEHALEKLFHLKECCYEPSMWLNEQYRKYLTSKYLPRSPS 355
Query: 2332 INLDDGLVYVHRLQVTPSKVYFSGPEINVSNRVLRHFRGYIDNFLRVSFIDEDLDKIHSN 2153
I+LD GL YV R Q+TP K YF GPE+NVSNRV+R + I+NFLRVSF+DE+L KIHS
Sbjct: 356 ISLDTGLEYVRRGQITPCKAYFCGPEVNVSNRVIRRYSKDINNFLRVSFVDEELGKIHST 415
Query: 2152 DLSPRGSSATEIRRTEIYERILSTLHDGIVIGDKKFEFLAFSSSQLRESSTWMFASTDGL 1973
DLSPR SS RRT IY RILSTL +GIVIG+K+FEFLAFSSSQLRE+S WMFAS DGL
Sbjct: 416 DLSPRASSGNGDRRTAIYNRILSTLQNGIVIGNKRFEFLAFSSSQLRENSCWMFASRDGL 475
Query: 1972 TAAVIREWMGNFRQIRNVAKYAARLGQSFSSSTETLNVGKNEIEIIPDVKIESGNTTYVF 1793
TAA IREWMGNFRQIRNVAKYAARLGQSF SSTETL+V +N+IEI+PD++ E G T Y+F
Sbjct: 476 TAADIREWMGNFRQIRNVAKYAARLGQSFGSSTETLSVRRNQIEILPDIEAERGRTKYLF 535
Query: 1792 SDGIGKISSEFSMKVASKCGLKDSPPSAFQIRYGGYKGVVAVDPTSSKKLSLRDSMCKYE 1613
SDGIGKIS+EF+ +VA KCG + PSAFQIRYGGYKGVVAVDPTSSKKLSLR SMCKYE
Sbjct: 536 SDGIGKISAEFARRVALKCGHQGFYPSAFQIRYGGYKGVVAVDPTSSKKLSLRKSMCKYE 595
Query: 1612 SELMKLDVLAWSKYQPCFLNRQLISLLSTLGIPDEVFEKKQREAVRQLDDILRDPLKAQE 1433
SE KLDVL +SKYQPCFLNRQ+I+LLSTLG+PD +FEKKQREAV QLD IL + L+AQE
Sbjct: 596 SENTKLDVLGYSKYQPCFLNRQMITLLSTLGVPDHIFEKKQREAVDQLDAILTNSLRAQE 655
Query: 1432 ALELMSPGENTNILKEMLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 1253
AL+LMSPGE TNIL EML+CGY+PDAEPFL+MMLQ FRASKLL++RTK+RIF+PNGRSMM
Sbjct: 656 ALDLMSPGETTNILNEMLLCGYQPDAEPFLAMMLQMFRASKLLDVRTKSRIFVPNGRSMM 715
Query: 1252 GCLDETRTLDYGQVFVQFSGAGYRQLFDEYSVFGSSGSRQRFIVEGRVVVAKNPCLHPGD 1073
GCLDETR L+YGQVFVQFSG+ ++Q++D ++FG GS RF++EG+V+VAKNPCLHPGD
Sbjct: 716 GCLDETRNLEYGQVFVQFSGSKHKQVYDSSTMFGGIGSGNRFVIEGQVIVAKNPCLHPGD 775
Query: 1072 VRVLRAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDSELIPRKHDEPM 893
+RVLRAVNVP LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD +LIPR PM
Sbjct: 776 IRVLRAVNVPDLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPRLQIPPM 835
Query: 892 DYAPAPSTQLDHDVRIEEVEEYFTNYIVNDSLGIISNAHTVFADREPLKARSDPCLQLAE 713
DY P PS QLDHDV I+EV EYFTNYI+NDSLGIISNAHTVFADREP KA S PCL+LA
Sbjct: 836 DYTPEPSLQLDHDVTIQEVAEYFTNYILNDSLGIISNAHTVFADREPAKAMSKPCLELAS 895
Query: 712 KFSIAVDFPKTGVPADIPRHLYVKEYPDFMEKPDKPTYESNNVIGKLFREVKDISPQTSC 533
KFSIAVDFPKTGVPA+I HL VKEYPDFMEKPDKPTYES NVIGKLFR V+DI+P TS
Sbjct: 896 KFSIAVDFPKTGVPAEIHSHLRVKEYPDFMEKPDKPTYESQNVIGKLFRAVRDIAPHTSS 955
Query: 532 IRLFTKEVARRSYDPDMEVDGFEDHIHDAFYHKGNYDYKLGNLMDYYGIKTEAEILSGGI 353
I+ FT EVAR+ YDPDMEVDGF+D+I DAF +K NYDYKLGN MDYYGI+TEAEIL G I
Sbjct: 956 IKSFTLEVARQCYDPDMEVDGFKDYIDDAFDYKSNYDYKLGNHMDYYGIRTEAEILGGSI 1015
Query: 352 LKMSKSFTKRRDAEAIGLAVRSLRKEARAWFKEKRSGLD-YEDDAYAKASAWYHVTYHHS 176
+KMSK+FTK+RDAEAIGLAV SL KEAR+WF E SGLD EDD YAKASAWY+VTYH +
Sbjct: 1016 MKMSKAFTKKRDAEAIGLAVSSLIKEARSWFNENGSGLDSEEDDVYAKASAWYYVTYHPT 1075
Query: 175 YWGCYNEDMNRDHFLSFPWCVYDKLIEIKKNK 80
YWG YNE MNRDHFLSFPWCVYDKLI+IK+ +
Sbjct: 1076 YWGRYNEGMNRDHFLSFPWCVYDKLIQIKRKR 1107
>ref|XP_010093320.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
gi|587864166|gb|EXB53859.1| RNA-dependent RNA polymerase
1 [Morus notabilis]
Length = 1133
Score = 1631 bits (4223), Expect = 0.0
Identities = 798/1118 (71%), Positives = 935/1118 (83%), Gaps = 1/1118 (0%)
Frame = -3
Query: 3412 MGKTIQVYGFPSGVTAEAVKNLLQSHTGEETIYAIKVRLPKNGALRAYAIVQFTTDASAV 3233
MGKTIQ+ GFPS V+AE+VK L+ HTG T+YAIK+R KNG R+YAIVQF T +A
Sbjct: 1 MGKTIQLSGFPSHVSAESVKEFLEGHTGRGTVYAIKIRPTKNGGSRSYAIVQFMTVETAE 60
Query: 3232 TIISLANSRRLWYGRSYLNARPMENDIVPRPRTFLYTMESIKLSFGCKISKEKFAVLWRG 3053
II LAN R LWYGRSYL AR ME DIVP+PR LY+++++ L FGC+ISKEKF+ LWR
Sbjct: 61 LIIRLANPR-LWYGRSYLLARVMERDIVPKPRATLYSLQNVTLHFGCQISKEKFSFLWRV 119
Query: 3052 VNVTVNFGFGMRKINFLLSHLETEYRLELAYENIWEIELHSPHGQTAKYLLIQLLGAPRI 2873
NV+V+FG G+R++NF L++ EYRL+L YEN+W+IELH P GQTAKYLLIQLLGAPR+
Sbjct: 120 GNVSVDFGLGLRRLNFYLTYGPVEYRLQLLYENVWQIELHRPRGQTAKYLLIQLLGAPRV 179
Query: 2872 FKKDVCSSDLVYESLLFNFFMEIPDDQWVRARDFTPSNCIGQSTGLCLELPYGLELPDFQ 2693
++K+V S + E+ LFN+F + PDDQWVRA DFT S CIG S+ L LELPYG++LPD +
Sbjct: 180 YEKEVRISFDILENPLFNYFKDTPDDQWVRATDFTESCCIGHSSALYLELPYGVDLPDLR 239
Query: 2692 ENFAYYRESRGNFTLETGFAYSKSLDLVPIVGPPAGITLPYEILFKINLLVQNGCVPGPL 2513
ENF YY+ES F LE+G ++S++LDLVPIVGPP+GI LP+E +FKIN+L+QNGC+ GP
Sbjct: 240 ENFVYYKESEERFILESGSSFSRNLDLVPIVGPPSGINLPFETVFKINMLLQNGCLSGPT 299
Query: 2512 LDSNFYRLVDPCRTNVSMSCIEHALDKLYHFKECCYEPSRWLTEQYTKYITSGRMPRLPA 2333
LD +FYRLVDP R ++ CI +AL+KL++ KEC YEP+ WL EQY KY+T+ R P+ PA
Sbjct: 300 LDVDFYRLVDPQRIR-NVDCINYALEKLFNLKECPYEPAAWLNEQYRKYLTAPRPPKPPA 358
Query: 2332 INLDDGLVYVHRLQVTPSKVYFSGPEINVSNRVLRHFRGYIDNFLRVSFIDEDLDKIHSN 2153
I LD GLVYV R+QVTPSKVYF GPEINVSNRVLR + YID FLRVSF+DE+L+K+ S
Sbjct: 359 IALDSGLVYVRRVQVTPSKVYFCGPEINVSNRVLREYIDYIDYFLRVSFVDEELEKLFST 418
Query: 2152 DLSPRGSSATEIRRTEIYERILSTLHDGIVIGDKKFEFLAFSSSQLRESSTWMFASTDGL 1973
DLSPR S+A E RRT IY RILS L +GI IGD+KFEFLAFSSSQLR++S WMFA+ DG
Sbjct: 419 DLSPRTSNANEDRRTGIYRRILSVLRNGIEIGDRKFEFLAFSSSQLRDNSLWMFAAVDGH 478
Query: 1972 TAAVIREWMGNFRQIRNVAKYAARLGQSFSSSTETLNVGKNEIEIIPDVKIESGNTTYVF 1793
+A IR+W+G+FR IRNVAKYAARLGQSF SSTETL V ++E E+I D++IE G YVF
Sbjct: 479 SADTIRQWIGDFRSIRNVAKYAARLGQSFGSSTETLTVDESETEVISDIEIERGAVKYVF 538
Query: 1792 SDGIGKISSEFSMKVASKCGLKDSPPSAFQIRYGGYKGVVAVDPTSSKKLSLRDSMCKYE 1613
SDGIGKISS F+ +VA KCGLKD PSAFQIRY GYKGVVAVDPTSS KLSLR SM KYE
Sbjct: 539 SDGIGKISSTFAKRVAKKCGLKDCVPSAFQIRYCGYKGVVAVDPTSSTKLSLRKSMWKYE 598
Query: 1612 SELMKLDVLAWSKYQPCFLNRQLISLLSTLGIPDEVFEKKQREAVRQLDDILRDPLKAQE 1433
SEL KLDVLA+SK Q C+LNRQLI+LLSTLG+ D VFEKKQREAV+QL+ IL DPL+A+E
Sbjct: 599 SELHKLDVLAYSKLQHCYLNRQLITLLSTLGVGDRVFEKKQREAVQQLNAILNDPLRARE 658
Query: 1432 ALELMSPGENTNILKEMLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 1253
AL+LMS GE TNILKE+L CGY+P+AEPFLSMMLQ FRASKL ELRTKTRI IP+GR+MM
Sbjct: 659 ALDLMSAGETTNILKELLSCGYQPNAEPFLSMMLQAFRASKLQELRTKTRISIPDGRAMM 718
Query: 1252 GCLDETRTLDYGQVFVQFSGAGYRQLFDEYSVFGSSGSRQRFIVEGRVVVAKNPCLHPGD 1073
GCLDE RTL+YG+VFVQFSG +R F++ + G +GS Q +IV GRVVVAKNPCLHPGD
Sbjct: 719 GCLDEMRTLEYGEVFVQFSGITHRPFFEDSFMLGGTGSGQNYIVVGRVVVAKNPCLHPGD 778
Query: 1072 VRVLRAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDSELIPRKHDEPM 893
VRVLRAVNVPALHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD ELIP+K EPM
Sbjct: 779 VRVLRAVNVPALHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDDELIPQKQFEPM 838
Query: 892 DYAPAPSTQLDHDVRIEEVEEYFTNYIVNDSLGIISNAHTVFADREPLKARSDPCLQLAE 713
DY+PAP+T+LDHDVRIEEV+EYFTNYIVNDSLGII+NAHT FAD+EP KA S C++LA
Sbjct: 839 DYSPAPTTRLDHDVRIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPSKAMSPSCIELAR 898
Query: 712 KFSIAVDFPKTGVPADIPRHLYVKEYPDFMEKPDKPTYESNNVIGKLFREVKDISPQTSC 533
FSIAVDFPKTGVPA IP+ LYVKEYPDFMEK +KPTYES NVIGKLFREVKDI+P
Sbjct: 899 LFSIAVDFPKTGVPAVIPQELYVKEYPDFMEKLNKPTYESQNVIGKLFREVKDIAPNVGS 958
Query: 532 IRLFTKEVARRSYDPDMEVDGFEDHIHDAFYHKGNYDYKLGNLMDYYGIKTEAEILSGGI 353
+ FTKEVA RSYDPDME DGFED+I DAFY+K NYDYKLGNL+DYYGIK+EAEI+ G I
Sbjct: 959 LHFFTKEVASRSYDPDMEYDGFEDYIDDAFYYKSNYDYKLGNLLDYYGIKSEAEIIGGSI 1018
Query: 352 LKMSKSFTKRRDAEAIGLAVRSLRKEARAWFKEKRSGLD-YEDDAYAKASAWYHVTYHHS 176
++MSKSFTKRRDAE+I +AVR+LRKEAR WF EK S LD DD YAKASAWY+VTYHHS
Sbjct: 1019 MRMSKSFTKRRDAESINMAVRALRKEARTWFNEKGSSLDSAADDVYAKASAWYYVTYHHS 1078
Query: 175 YWGCYNEDMNRDHFLSFPWCVYDKLIEIKKNKTSIRNA 62
YWGCYNE MNRDH+LSFPWCVYDKL++IK++K S+R +
Sbjct: 1079 YWGCYNEGMNRDHYLSFPWCVYDKLVQIKRSKASVRRS 1116
>ref|XP_012463738.1| PREDICTED: RNA-dependent RNA polymerase 1 [Gossypium raimondii]
gi|763812161|gb|KJB79013.1| hypothetical protein
B456_013G029000 [Gossypium raimondii]
Length = 1110
Score = 1613 bits (4177), Expect = 0.0
Identities = 796/1118 (71%), Positives = 926/1118 (82%), Gaps = 1/1118 (0%)
Frame = -3
Query: 3412 MGKTIQVYGFPSGVTAEAVKNLLQSHTGEETIYAIKVRLPKNGALRAYAIVQFTTDASAV 3233
MGKTIQVYGF S V+A VK L+ +TG ET+YA+K+R K G RAYAIVQFT ++A
Sbjct: 1 MGKTIQVYGFLSNVSAGEVKTFLEGYTGRETVYALKIRQHKKGG-RAYAIVQFTRSSAAE 59
Query: 3232 TIISLANSRRLWYGRSYLNARPMENDIVPRPRTFLYTMESIKLSFGCKISKEKFAVLWRG 3053
II LAN +RL+YGRSYL AR ME DIVP+PR FL+TME + ++FGC++S EKF VLW+
Sbjct: 60 LIIRLAN-QRLYYGRSYLKAREMETDIVPKPRAFLHTMERVTVNFGCQVSVEKFYVLWKA 118
Query: 3052 VNVTVNFGFGMRKINFLLSHLETEYRLELAYENIWEIELHSPHGQTAKYLLIQLLGAPRI 2873
NVT+NFG GMRK+ FL+S+ ++Y+LEL YENIW+IEL P QT+K+LLIQL GAPRI
Sbjct: 119 ENVTLNFGTGMRKLEFLVSYCRSKYKLELFYENIWQIELRCPDSQTSKHLLIQLFGAPRI 178
Query: 2872 FKKDVCSSDLVYESLLFNFFMEIPDDQWVRARDFTPSNCIGQSTGLCLELPYGLELPDFQ 2693
++K+V +S+LV++ L N+F ++PDDQWVR DFT SNCIGQS+ LCLELP+ L LP+F+
Sbjct: 179 YEKEVRASELVFDDPLLNYFKDVPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLRLPNFR 238
Query: 2692 ENFAYYRESRGNFTLETGFAYSKSLDLVPIVGPPAGITLPYEILFKINLLVQNGCVPGPL 2513
ENFAYY+E+ LE+G +YS +L LVPIV P I LP+EILFK+NLLVQNGC+PGP
Sbjct: 239 ENFAYYKENESRLVLESGSSYSCNLSLVPIVCPLRVIDLPFEILFKVNLLVQNGCIPGPA 298
Query: 2512 LDSNFYRLVDPCRTNVSMSCIEHALDKLYHFKECCYEPSRWLTEQYTKYITSGRMPRLPA 2333
LD FYRLVDPCR + I+HAL+KLY+ +ECCYEPSRWL E+Y + S + PA
Sbjct: 299 LDDTFYRLVDPCR--MDKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPA 356
Query: 2332 INLDDGLVYVHRLQVTPSKVYFSGPEINVSNRVLRHFRGYIDNFLRVSFIDEDLDKIHSN 2153
I+LD+GLVYV R+Q+TPS+VYF GPEINVSNRVLR F IDNFLR+SF+DE+L+KIHS
Sbjct: 357 ISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSI 416
Query: 2152 DLSPRGSSATEIRRTEIYERILSTLHDGIVIGDKKFEFLAFSSSQLRESSTWMFASTDGL 1973
++ RG RRT IYERILSTL +G++IGDK+FEFLAFSSSQLRE+S WMFAS GL
Sbjct: 417 NVQARG------RRTSIYERILSTLRNGVLIGDKRFEFLAFSSSQLRENSAWMFASRKGL 470
Query: 1972 TAAVIREWMGNFRQIRNVAKYAARLGQSFSSSTETLNVGKNEIEIIPDVKIESGNTTYVF 1793
TAA IR WMGNF +IRNVAKYAARLGQSFSSSTETL+V K+EI +IPD++I YVF
Sbjct: 471 TAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVF 530
Query: 1792 SDGIGKISSEFSMKVASKCGLKDSPPSAFQIRYGGYKGVVAVDPTSSKKLSLRDSMCKYE 1613
SDGIGKIS++F+ KVA+KC LK PSAFQIR GG+KGVVA+DPTSS KLSLR SM KYE
Sbjct: 531 SDGIGKISAKFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYE 590
Query: 1612 SELMKLDVLAWSKYQPCFLNRQLISLLSTLGIPDEVFEKKQREAVRQLDDILRDPLKAQE 1433
SE KLDVLAWSKYQPCFLNRQLI+LLSTLG+PD FEKKQRE + QL+ +L DPL+AQE
Sbjct: 591 SENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVIEQLNALLTDPLEAQE 650
Query: 1432 ALELMSPGENTNILKEMLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 1253
ALELMSPGENTNILKEML+CGYKPDAEPFLSMML+ FRASKLLELRTK RIF+ GRSMM
Sbjct: 651 ALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLEAFRASKLLELRTKARIFVQKGRSMM 710
Query: 1252 GCLDETRTLDYGQVFVQFSGAGYRQLFDEYSVFGSSGSRQRFIVEGRVVVAKNPCLHPGD 1073
GCLDETRTL+YGQVFVQFSG S S QR IV+G+V+VAKNPCLHPGD
Sbjct: 711 GCLDETRTLNYGQVFVQFSG---------------SRSEQRCIVQGKVIVAKNPCLHPGD 755
Query: 1072 VRVLRAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDSELIPRKHDEPM 893
VRVLRAVNVP LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD ELIP K +PM
Sbjct: 756 VRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDIYFVCWDPELIPYKQMDPM 815
Query: 892 DYAPAPSTQLDHDVRIEEVEEYFTNYIVNDSLGIISNAHTVFADREPLKARSDPCLQLAE 713
DY+PAP+T LDH+V IEE+EEYFTNYIVNDSLGIISNAHT FADREP KA PCL+LA+
Sbjct: 816 DYSPAPTTILDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMCHPCLELAK 875
Query: 712 KFSIAVDFPKTGVPADIPRHLYVKEYPDFMEKPDKPTYESNNVIGKLFREVKDISPQTSC 533
FSIAVDFPKTGVPA+IP+ L VKEYPDFMEKPDKP+Y+S+NVIGKLFREVK+++P
Sbjct: 876 LFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVKNLAPNECS 935
Query: 532 IRLFTKEVARRSYDPDMEVDGFEDHIHDAFYHKGNYDYKLGNLMDYYGIKTEAEILSGGI 353
I+ T+E +R YDPDMEV+GFED+I DAF+HK YDYKLGNLMDYYG+KTEAEILSGGI
Sbjct: 936 IKFLTREKMQRFYDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTEAEILSGGI 995
Query: 352 LKMSKSFTKRRDAEAIGLAVRSLRKEARAWFKEKRSGLDYE-DDAYAKASAWYHVTYHHS 176
LKMS+SFTK+RDAEAI +AVRSLRKEAR+WF E+RS LD E DDAYAKASAWY+VTYH S
Sbjct: 996 LKMSRSFTKKRDAEAISMAVRSLRKEARSWFNEERSELDEEIDDAYAKASAWYYVTYHPS 1055
Query: 175 YWGCYNEDMNRDHFLSFPWCVYDKLIEIKKNKTSIRNA 62
YWG YNE MNRDHFLSFPWCVYDKLI+IKK K ++R A
Sbjct: 1056 YWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAAVREA 1093
>gb|KHG26498.1| RNA-dependent RNA polymerase 1 -like protein [Gossypium arboreum]
gi|728850182|gb|KHG29625.1| RNA-dependent RNA polymerase
1 -like protein [Gossypium arboreum]
Length = 1110
Score = 1611 bits (4171), Expect = 0.0
Identities = 795/1118 (71%), Positives = 927/1118 (82%), Gaps = 1/1118 (0%)
Frame = -3
Query: 3412 MGKTIQVYGFPSGVTAEAVKNLLQSHTGEETIYAIKVRLPKNGALRAYAIVQFTTDASAV 3233
MGKTIQVYGF S V+A VK L+ +TG ET+YA+K+R K RAYAIVQFT + A
Sbjct: 1 MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSG-RAYAIVQFTRSSDAG 59
Query: 3232 TIISLANSRRLWYGRSYLNARPMENDIVPRPRTFLYTMESIKLSFGCKISKEKFAVLWRG 3053
II LAN +RL+YGRSYL AR ME DIVP+PR FL+TME + ++FGC++S+EKF VLW+
Sbjct: 60 LIIRLAN-QRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWKA 118
Query: 3052 VNVTVNFGFGMRKINFLLSHLETEYRLELAYENIWEIELHSPHGQTAKYLLIQLLGAPRI 2873
NVT+NFG GMRK+ FLLS+ ++Y+LEL YENIW+IEL PH QT+K+LLIQL GAPRI
Sbjct: 119 DNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPRI 178
Query: 2872 FKKDVCSSDLVYESLLFNFFMEIPDDQWVRARDFTPSNCIGQSTGLCLELPYGLELPDFQ 2693
++ +V +S+ V++ L N+F ++PDDQWVR DFT SNCIGQS+ LCLELP+ L+LP+F+
Sbjct: 179 YETEVRASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQLPNFR 238
Query: 2692 ENFAYYRESRGNFTLETGFAYSKSLDLVPIVGPPAGITLPYEILFKINLLVQNGCVPGPL 2513
ENFAYY+E+ G LE+G +YS +L LVPIV P I LP+EILFK+NLLVQNGC+PGP
Sbjct: 239 ENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPA 298
Query: 2512 LDSNFYRLVDPCRTNVSMSCIEHALDKLYHFKECCYEPSRWLTEQYTKYITSGRMPRLPA 2333
LD FYRLVDPCR + I+HAL+KLY+ +ECCYEPSRWL E+Y + S + P
Sbjct: 299 LDDTFYRLVDPCRMHKVY--IDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPT 356
Query: 2332 INLDDGLVYVHRLQVTPSKVYFSGPEINVSNRVLRHFRGYIDNFLRVSFIDEDLDKIHSN 2153
I+LD+GLVYV R+Q+TPS+VYF GPEINVSNRVLR F IDNFLR+SF+DE+L+KIHS
Sbjct: 357 ISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHST 416
Query: 2152 DLSPRGSSATEIRRTEIYERILSTLHDGIVIGDKKFEFLAFSSSQLRESSTWMFASTDGL 1973
++ RG RRT IY+RILSTL +GIVIG+K+FEFLAFSSSQLRE+S WMFAS GL
Sbjct: 417 NVQARG------RRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGL 470
Query: 1972 TAAVIREWMGNFRQIRNVAKYAARLGQSFSSSTETLNVGKNEIEIIPDVKIESGNTTYVF 1793
TAA IR WMGNF +IRNVAKYAARLGQSFSSSTETL+V K+EI +IPD++I YVF
Sbjct: 471 TAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVF 530
Query: 1792 SDGIGKISSEFSMKVASKCGLKDSPPSAFQIRYGGYKGVVAVDPTSSKKLSLRDSMCKYE 1613
SDGIGKIS+EF+ KVA+KC LK PSAFQIR GG+KGVVA+DPTSS KLSLR SM KYE
Sbjct: 531 SDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYE 590
Query: 1612 SELMKLDVLAWSKYQPCFLNRQLISLLSTLGIPDEVFEKKQREAVRQLDDILRDPLKAQE 1433
SE KLDVLAWSKYQPCFLNRQLI+LLSTLG+PD FEKKQRE V QL+ +L DPL+AQE
Sbjct: 591 SENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLEAQE 650
Query: 1432 ALELMSPGENTNILKEMLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 1253
ALELMSPGENTNILKEML+CGYKPDAEPFLSMML+TFRASKLLELRTK RIF+ GRSMM
Sbjct: 651 ALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMM 710
Query: 1252 GCLDETRTLDYGQVFVQFSGAGYRQLFDEYSVFGSSGSRQRFIVEGRVVVAKNPCLHPGD 1073
GCLDETRTL+YGQVFVQFSG S S +RFIV+G+V+VAKNPCLHPGD
Sbjct: 711 GCLDETRTLNYGQVFVQFSG---------------SRSERRFIVQGKVIVAKNPCLHPGD 755
Query: 1072 VRVLRAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDSELIPRKHDEPM 893
VRVLRAVNVP LHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD ELIP K +PM
Sbjct: 756 VRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPM 815
Query: 892 DYAPAPSTQLDHDVRIEEVEEYFTNYIVNDSLGIISNAHTVFADREPLKARSDPCLQLAE 713
DY+PA +T+LDH+V IEE+EEYFTNYIVNDSLGIISNAHT FADREP KA S PCL+LA+
Sbjct: 816 DYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMSRPCLELAK 875
Query: 712 KFSIAVDFPKTGVPADIPRHLYVKEYPDFMEKPDKPTYESNNVIGKLFREVKDISPQTSC 533
FSIAVDFPKTGVPA+IP+ L VKE+PDFMEKPDKP+Y+S NVIGKLFREVK+++P
Sbjct: 876 LFSIAVDFPKTGVPAEIPQELRVKEFPDFMEKPDKPSYQSYNVIGKLFREVKNLAPNECS 935
Query: 532 IRLFTKEVARRSYDPDMEVDGFEDHIHDAFYHKGNYDYKLGNLMDYYGIKTEAEILSGGI 353
I+L T+E +R YDPDMEV+GFED+I DAF++K YDYKLGNLMDYYG+KTEAEILSGGI
Sbjct: 936 IKLLTREKMKRFYDPDMEVEGFEDYIDDAFFYKSKYDYKLGNLMDYYGVKTEAEILSGGI 995
Query: 352 LKMSKSFTKRRDAEAIGLAVRSLRKEARAWFKEKRSGLDYE-DDAYAKASAWYHVTYHHS 176
+KMS+SFTK+RDAE I +AVRSLRKEAR+WF EK S LD E DDAYAKASAWY+VTYHHS
Sbjct: 996 MKMSRSFTKKRDAEVISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHHS 1055
Query: 175 YWGCYNEDMNRDHFLSFPWCVYDKLIEIKKNKTSIRNA 62
YWG YNE MNRDHFLSFPWCVYDKLI+IKK K ++R A
Sbjct: 1056 YWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAALREA 1093
>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 1608 bits (4163), Expect = 0.0
Identities = 794/1118 (71%), Positives = 926/1118 (82%), Gaps = 1/1118 (0%)
Frame = -3
Query: 3412 MGKTIQVYGFPSGVTAEAVKNLLQSHTGEETIYAIKVRLPKNGALRAYAIVQFTTDASAV 3233
MGKTIQVYGF S V+A VK L+ +TG ET+YA+K+R K RA+AIVQFT + A
Sbjct: 1 MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSG-RAFAIVQFTRSSDAG 59
Query: 3232 TIISLANSRRLWYGRSYLNARPMENDIVPRPRTFLYTMESIKLSFGCKISKEKFAVLWRG 3053
II LAN +RL+YGRSYL AR ME DIVP+PR FL+TME + ++FGC++S+EKF VLW+
Sbjct: 60 LIIRLAN-QRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWKA 118
Query: 3052 VNVTVNFGFGMRKINFLLSHLETEYRLELAYENIWEIELHSPHGQTAKYLLIQLLGAPRI 2873
NVT+NFG GMRK+ FLLS+ ++Y+LEL YENIW+IEL PH QT+K+LLIQL GAPRI
Sbjct: 119 DNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPRI 178
Query: 2872 FKKDVCSSDLVYESLLFNFFMEIPDDQWVRARDFTPSNCIGQSTGLCLELPYGLELPDFQ 2693
++K+V +S+ V++ L N+F ++PDDQWVR DFT SNCIGQS+ L LELP+ L+LP+F+
Sbjct: 179 YEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQLPNFR 238
Query: 2692 ENFAYYRESRGNFTLETGFAYSKSLDLVPIVGPPAGITLPYEILFKINLLVQNGCVPGPL 2513
ENFAYY+E+ G LE+G +YS +L LVPIV P I LP+EILFK+NLLVQNGC+PGP
Sbjct: 239 ENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPA 298
Query: 2512 LDSNFYRLVDPCRTNVSMSCIEHALDKLYHFKECCYEPSRWLTEQYTKYITSGRMPRLPA 2333
LD FYRLVDPCR + I+HAL+KLY+ +ECCYEPSRWL E+Y + S + P
Sbjct: 299 LDDTFYRLVDPCRMHKVY--IDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPT 356
Query: 2332 INLDDGLVYVHRLQVTPSKVYFSGPEINVSNRVLRHFRGYIDNFLRVSFIDEDLDKIHSN 2153
I+LD+GLVYV R+Q+TPS+VYF GPEINVSNRVLR F IDNFLR+SF+DE+L+KIHS
Sbjct: 357 ISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHST 416
Query: 2152 DLSPRGSSATEIRRTEIYERILSTLHDGIVIGDKKFEFLAFSSSQLRESSTWMFASTDGL 1973
++ RG RRT IY+RILSTL +GIVIG+K+FEFLAFSSSQLRE+S WMFAS GL
Sbjct: 417 NVQARG------RRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGL 470
Query: 1972 TAAVIREWMGNFRQIRNVAKYAARLGQSFSSSTETLNVGKNEIEIIPDVKIESGNTTYVF 1793
TAA IR WMGNF +IRNVAKYAARLGQSFSSSTETL+V K+EI +IPD++I YVF
Sbjct: 471 TAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVF 530
Query: 1792 SDGIGKISSEFSMKVASKCGLKDSPPSAFQIRYGGYKGVVAVDPTSSKKLSLRDSMCKYE 1613
SDGIGKIS+EF+ KVA+KC LK PSAFQIR GG+KGVVA+DPTSS KLSLR SM KYE
Sbjct: 531 SDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYE 590
Query: 1612 SELMKLDVLAWSKYQPCFLNRQLISLLSTLGIPDEVFEKKQREAVRQLDDILRDPLKAQE 1433
SE KLDVLAWSKYQPCFLNRQLI+LLSTLG+PD FEKKQRE V QL+ +L DPL+AQE
Sbjct: 591 SENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLEAQE 650
Query: 1432 ALELMSPGENTNILKEMLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 1253
ALELMSPGENTNILKEML+CGYKPDAEPFLSMML+TFRASKLLELRTK RIF+ GRSMM
Sbjct: 651 ALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMM 710
Query: 1252 GCLDETRTLDYGQVFVQFSGAGYRQLFDEYSVFGSSGSRQRFIVEGRVVVAKNPCLHPGD 1073
GCLDETRTL+YGQVFVQFSG S S +RFIV+G+V+VAKNPCLHPGD
Sbjct: 711 GCLDETRTLNYGQVFVQFSG---------------SRSERRFIVQGKVIVAKNPCLHPGD 755
Query: 1072 VRVLRAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDSELIPRKHDEPM 893
VRVLRAVNVP LHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD ELIP K +PM
Sbjct: 756 VRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPM 815
Query: 892 DYAPAPSTQLDHDVRIEEVEEYFTNYIVNDSLGIISNAHTVFADREPLKARSDPCLQLAE 713
DY+PA +T+LDH+V IEE+EEYFTNYIVNDSLGIISNAHT FADREP KA S PCL+LA+
Sbjct: 816 DYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPDKAMSRPCLELAK 875
Query: 712 KFSIAVDFPKTGVPADIPRHLYVKEYPDFMEKPDKPTYESNNVIGKLFREVKDISPQTSC 533
FSIAVDFPKTGVPA+IP+ L VKEYPDFMEKPDKP+Y+S+NVIGKLFREVK+++P
Sbjct: 876 LFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVKNLAPNECS 935
Query: 532 IRLFTKEVARRSYDPDMEVDGFEDHIHDAFYHKGNYDYKLGNLMDYYGIKTEAEILSGGI 353
I+ T+E +R YDPDMEV+GFED+I DAF+HK YDYKLGNLMDYYG+KTEAEIL GGI
Sbjct: 936 IKFLTREKMQRFYDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTEAEILGGGI 995
Query: 352 LKMSKSFTKRRDAEAIGLAVRSLRKEARAWFKEKRSGLDYE-DDAYAKASAWYHVTYHHS 176
+KMS+SFTK+RDAEAI +AVRSLRKEAR+WF EK S LD E DDAYAKASAWY+VTYH S
Sbjct: 996 MKMSRSFTKKRDAEAISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHPS 1055
Query: 175 YWGCYNEDMNRDHFLSFPWCVYDKLIEIKKNKTSIRNA 62
YWG YNE MNRDHFLSFPWCVYDKLI+IKK K ++R A
Sbjct: 1056 YWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAAVREA 1093
>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 1604 bits (4153), Expect = 0.0
Identities = 792/1118 (70%), Positives = 925/1118 (82%), Gaps = 1/1118 (0%)
Frame = -3
Query: 3412 MGKTIQVYGFPSGVTAEAVKNLLQSHTGEETIYAIKVRLPKNGALRAYAIVQFTTDASAV 3233
MGKTIQVYGF S V+A VK L+ +TG ET+YA+K+R K RA+AIVQFT + A
Sbjct: 1 MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSG-RAFAIVQFTRSSDAG 59
Query: 3232 TIISLANSRRLWYGRSYLNARPMENDIVPRPRTFLYTMESIKLSFGCKISKEKFAVLWRG 3053
II LAN +RL+YGRSYL AR ME DIVP+PR FL+TME + ++F C +S+EKF VLW+
Sbjct: 60 LIIRLAN-QRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFDCHVSEEKFYVLWKA 118
Query: 3052 VNVTVNFGFGMRKINFLLSHLETEYRLELAYENIWEIELHSPHGQTAKYLLIQLLGAPRI 2873
NVT+NFG GMRK+ FLLS+ ++Y+LEL YENIW+IEL PH QT+K+LLIQL GAPRI
Sbjct: 119 DNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPRI 178
Query: 2872 FKKDVCSSDLVYESLLFNFFMEIPDDQWVRARDFTPSNCIGQSTGLCLELPYGLELPDFQ 2693
++K+V +S+ V++ L N+F ++PDDQWVR DFT SNCIGQS+ LCLELP+ L+LP+F+
Sbjct: 179 YEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQLPNFR 238
Query: 2692 ENFAYYRESRGNFTLETGFAYSKSLDLVPIVGPPAGITLPYEILFKINLLVQNGCVPGPL 2513
ENFAYY+E+ G LE+G +YS +L LVPIV P I LP+EILFK+NLLVQNGC+PGP
Sbjct: 239 ENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPA 298
Query: 2512 LDSNFYRLVDPCRTNVSMSCIEHALDKLYHFKECCYEPSRWLTEQYTKYITSGRMPRLPA 2333
LD FYRLVDPCR + I+HAL+KLY+ +ECCYEPSRWL E+Y + S + P
Sbjct: 299 LDDTFYRLVDPCRMHKVY--IDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPT 356
Query: 2332 INLDDGLVYVHRLQVTPSKVYFSGPEINVSNRVLRHFRGYIDNFLRVSFIDEDLDKIHSN 2153
I+LD+GLVYV R+Q+TPS+VYF GPEINVSNRVLR F IDNFLR+SF+DE+L+KIHS
Sbjct: 357 ISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHST 416
Query: 2152 DLSPRGSSATEIRRTEIYERILSTLHDGIVIGDKKFEFLAFSSSQLRESSTWMFASTDGL 1973
++ RG RRT IY+RILSTL +GIVIG+K+FEFLAFSSSQLRE+S WMFAS GL
Sbjct: 417 NVQARG------RRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGL 470
Query: 1972 TAAVIREWMGNFRQIRNVAKYAARLGQSFSSSTETLNVGKNEIEIIPDVKIESGNTTYVF 1793
TAA IR WMGNF +IRNVAKYAARLGQSFSSSTETL+V K+EI +IPD++I YVF
Sbjct: 471 TAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVF 530
Query: 1792 SDGIGKISSEFSMKVASKCGLKDSPPSAFQIRYGGYKGVVAVDPTSSKKLSLRDSMCKYE 1613
DGIGKIS+EF+ KVA+KC LK PSAFQIR GG+KGVVA+DPTSS KLSLR SM KYE
Sbjct: 531 PDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYE 590
Query: 1612 SELMKLDVLAWSKYQPCFLNRQLISLLSTLGIPDEVFEKKQREAVRQLDDILRDPLKAQE 1433
SE KLDVLAWSKYQPCFLNRQLI+LLSTLG+PD FEKKQRE V QL+ +L DPL+AQE
Sbjct: 591 SENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLEAQE 650
Query: 1432 ALELMSPGENTNILKEMLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 1253
ALELMSPGENTNILKEML+CGYKPDAEPFLSMML+TFRASKLLELRTK RIF+ GRSMM
Sbjct: 651 ALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMM 710
Query: 1252 GCLDETRTLDYGQVFVQFSGAGYRQLFDEYSVFGSSGSRQRFIVEGRVVVAKNPCLHPGD 1073
GCLDETRTL+YGQVFVQFSG S S +RFIV+G+V+VAKNPCLHPGD
Sbjct: 711 GCLDETRTLNYGQVFVQFSG---------------SRSERRFIVQGKVIVAKNPCLHPGD 755
Query: 1072 VRVLRAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDSELIPRKHDEPM 893
VRVLRAVNVP LHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD ELIP K +PM
Sbjct: 756 VRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPM 815
Query: 892 DYAPAPSTQLDHDVRIEEVEEYFTNYIVNDSLGIISNAHTVFADREPLKARSDPCLQLAE 713
DY+PA +T+LDH+V IEE+EEYFTNYIVNDSLGIISNAHT FADREP KA S PCL+LA+
Sbjct: 816 DYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMSRPCLELAK 875
Query: 712 KFSIAVDFPKTGVPADIPRHLYVKEYPDFMEKPDKPTYESNNVIGKLFREVKDISPQTSC 533
FSIAVDFPKTGVPA+IP+ L VKE+PDFMEKPDKP+Y+S NVIGKLFREVK+++P
Sbjct: 876 LFSIAVDFPKTGVPAEIPQELRVKEFPDFMEKPDKPSYQSYNVIGKLFREVKNLAPNECS 935
Query: 532 IRLFTKEVARRSYDPDMEVDGFEDHIHDAFYHKGNYDYKLGNLMDYYGIKTEAEILSGGI 353
I+L T+E +R YDPDMEV+GF D+I DAF++K YDYKLGNLMDYYG+KTEAEILSGGI
Sbjct: 936 IKLLTREKMKRFYDPDMEVEGFVDYIDDAFFYKSKYDYKLGNLMDYYGVKTEAEILSGGI 995
Query: 352 LKMSKSFTKRRDAEAIGLAVRSLRKEARAWFKEKRSGLDYE-DDAYAKASAWYHVTYHHS 176
+KMS+SFTK+RDAE+I +AVRSLRKEAR+WF EK S LD E DDAYAKASAWY+VTYHHS
Sbjct: 996 MKMSRSFTKKRDAESISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHHS 1055
Query: 175 YWGCYNEDMNRDHFLSFPWCVYDKLIEIKKNKTSIRNA 62
YWG YNE MNRDHFLSFPWCVYDKLI+IKK K ++R A
Sbjct: 1056 YWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAALREA 1093
>ref|XP_010275353.1| PREDICTED: probable RNA-dependent RNA polymerase 1 [Nelumbo nucifera]
gi|719962527|ref|XP_010275424.1| PREDICTED: probable
RNA-dependent RNA polymerase 1 [Nelumbo nucifera]
gi|719962530|ref|XP_010275500.1| PREDICTED: probable
RNA-dependent RNA polymerase 1 [Nelumbo nucifera]
gi|719962533|ref|XP_010275583.1| PREDICTED: probable
RNA-dependent RNA polymerase 1 [Nelumbo nucifera]
gi|719962536|ref|XP_010275643.1| PREDICTED: probable
RNA-dependent RNA polymerase 1 [Nelumbo nucifera]
gi|719962539|ref|XP_010275710.1| PREDICTED: probable
RNA-dependent RNA polymerase 1 [Nelumbo nucifera]
Length = 1136
Score = 1587 bits (4110), Expect = 0.0
Identities = 784/1120 (70%), Positives = 914/1120 (81%), Gaps = 5/1120 (0%)
Frame = -3
Query: 3412 MGKTIQVYGFPSGVTAEAVKNLLQSHTGEETIYAIKVRLPKNG--ALRAYAIVQFTTDAS 3239
MGKTI + GFP+ VTAEAVK LL+ +TG+ T+YA+KVR KN A A+ IVQFTT S
Sbjct: 1 MGKTIHLSGFPANVTAEAVKELLERYTGDGTVYALKVRHHKNKGHARFAFVIVQFTTSGS 60
Query: 3238 AVTIISLANSRRLWYGRSYLNARPMENDIVPRPRTFLYTMESIKLSFGCKISKEKFAVLW 3059
A I SL N RRL+YG YL R +E DIV +PR L ++E L FGC++S EKF+VLW
Sbjct: 61 ADVITSLVN-RRLYYGTHYLKVRDVERDIVAKPRMSLLSLEHTTLHFGCQVSPEKFSVLW 119
Query: 3058 RGVNVTVNFGFGMRKINFLLSHLETEYRLELAYENIWEIELHSPHGQTAKYLLIQLLGAP 2879
+G +V V F FG+R+++F LS +Y+L L+YENIW+I+L P GQ K+LLIQ+ G P
Sbjct: 120 KGADVAVRFEFGLRRLHFFLSQFPIDYKLGLSYENIWQIQLRHPRGQNKKFLLIQMFGVP 179
Query: 2878 RIFKKDVCSSDLVYESLLFNFFMEIPDDQWVRARDFTPSNCIGQSTGLCLELPYGLELPD 2699
RIFKK S + ++E + N+F E PDDQW R DFTP CIGQS+ LCLELPY LP+
Sbjct: 180 RIFKKVKISLENMFEDPILNYFRE-PDDQWDRTTDFTPLCCIGQSSALCLELPYSYVLPN 238
Query: 2698 FQENFAYYRESRGNFTLETGFAYSKSLDLVPIVGPPAGITLPYEILFKINLLVQNGCVPG 2519
+E FAYY+E G F LE+G +S+SL LVPIVGP G +PYEILFK+ LVQNGC+ G
Sbjct: 239 IREYFAYYKEDEGPFVLESGATFSRSLSLVPIVGPSQGSDIPYEILFKVCSLVQNGCLSG 298
Query: 2518 PLLDSNFYRLVDPCRTNVSMSCIEHALDKLYHFKECCYEPSRWLTEQYTKYITSGRMPRL 2339
P LD+ F+RLVDP +S+ IE+AL+KLYH KECCYEP WLT+QY Y T R P+L
Sbjct: 299 PTLDAAFFRLVDP--NFISIDYIENALEKLYHLKECCYEPVNWLTKQYRAYCTLKRPPKL 356
Query: 2338 PAINLDDGLVYVHRLQVTPSKVYFSGPEINVSNRVLRHFRGYIDNFLRVSFIDEDLDKIH 2159
P+I+LDDGLVYV R+Q+TP KVYF GPE+ VSNRVLR + YIDNF+R+SF+DEDLDKIH
Sbjct: 357 PSISLDDGLVYVRRIQITPCKVYFCGPEVIVSNRVLREYSRYIDNFIRISFVDEDLDKIH 416
Query: 2158 SNDLSPRGSSATEIRRTEIYERILSTLHDGIVIGDKKFEFLAFSSSQLRESSTWMFASTD 1979
S D+SPR S A E TEIY+RILSTL +GIVIGDKKF+FLAFSSSQLR++S WMFAS++
Sbjct: 417 STDISPRTSFANEKGHTEIYDRILSTLKNGIVIGDKKFDFLAFSSSQLRDNSAWMFASSN 476
Query: 1978 GLTAAVIREWMGNFRQIRNVAKYAARLGQSFSSSTETLNVGKNEIEIIPDVKIESGNTTY 1799
G TAA IR+WMG+F +IRNVAKYAARLGQSFSSS ETLNV ++E EII D+K+E Y
Sbjct: 477 GYTAASIRQWMGDFSKIRNVAKYAARLGQSFSSSRETLNVYEHETEIIDDIKVEWRGIEY 536
Query: 1798 VFSDGIGKISSEFSMKVASKCGLKDSPPSAFQIRYGGYKGVVAVDPTSSKKLSLRDSMCK 1619
+FSDGIGKIS++F+ +VA KCG K S PSAFQIRYGGYKGVVAVDPTS+KKLSLR SM K
Sbjct: 537 IFSDGIGKISADFAKQVAKKCGFKGSFPSAFQIRYGGYKGVVAVDPTSTKKLSLRRSMSK 596
Query: 1618 YESELMKLDVLAWSKYQPCFLNRQLISLLSTLGIPDEVFEKKQREAVRQLDDILRDPLKA 1439
YES KLDVL+WSKYQPCFLNRQ+I+LLSTLG+ D +FEKKQ+EA+ QLD IL D LKA
Sbjct: 597 YESRNTKLDVLSWSKYQPCFLNRQIITLLSTLGVRDSIFEKKQKEAMDQLDAILTDSLKA 656
Query: 1438 QEALELMSPGENTNILKEMLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRS 1259
QEALE+MSPGENTNILKEML+CGY+P+AEPFLSMMLQTFRASKLLELRTKTRIF+PNGRS
Sbjct: 657 QEALEIMSPGENTNILKEMLLCGYEPNAEPFLSMMLQTFRASKLLELRTKTRIFVPNGRS 716
Query: 1258 MMGCLDETRTLDYGQVFVQFSGAGYRQLFDEYSVFGSSGS---RQRFIVEGRVVVAKNPC 1088
++GCLDETRTL YG+VFVQ S G RQ F E S+F SG+ +Q+FIVEG+++VAKNPC
Sbjct: 717 LLGCLDETRTLKYGEVFVQVSSIGRRQ-FHESSLFVFSGNEPEQQKFIVEGKIIVAKNPC 775
Query: 1087 LHPGDVRVLRAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDSELIPRK 908
LHPGDVR+L+AVNVPALHHMVDCVVFPQ+G RPHPNECSGSDLDGD+YFVCWD +LIP +
Sbjct: 776 LHPGDVRLLQAVNVPALHHMVDCVVFPQEGKRPHPNECSGSDLDGDVYFVCWDPDLIPPR 835
Query: 907 HDEPMDYAPAPSTQLDHDVRIEEVEEYFTNYIVNDSLGIISNAHTVFADREPLKARSDPC 728
+PM+Y P PS LDHDV IEE+EEYFTNYIVN+SLGII+NAHT FAD+EP KA SD C
Sbjct: 836 QIQPMEYLPEPSVNLDHDVTIEEIEEYFTNYIVNESLGIIANAHTAFADKEPKKAESDAC 895
Query: 727 LQLAEKFSIAVDFPKTGVPADIPRHLYVKEYPDFMEKPDKPTYESNNVIGKLFREVKDIS 548
LQLA+ FSIAVDFPKTGVPA+IP+HLYVKEYPDFMEK DKPTY S VIGKLFR VKDI+
Sbjct: 896 LQLAKLFSIAVDFPKTGVPAEIPQHLYVKEYPDFMEKLDKPTYVSERVIGKLFRAVKDIA 955
Query: 547 PQTSCIRLFTKEVARRSYDPDMEVDGFEDHIHDAFYHKGNYDYKLGNLMDYYGIKTEAEI 368
PQT IR FT+EVARRSYDPDMEVDGFED++ DA+Y+KG YD KLGNLMDYYGIKTEAEI
Sbjct: 956 PQTWSIRSFTQEVARRSYDPDMEVDGFEDYLSDAYYYKGEYDSKLGNLMDYYGIKTEAEI 1015
Query: 367 LSGGILKMSKSFTKRRDAEAIGLAVRSLRKEARAWFKEKRSGLDYEDDAYAKASAWYHVT 188
LSG I+K+SKSFTK+RDAEAI LAVRSLRKEARAWF EK DD YAKASAWYHVT
Sbjct: 1016 LSGNIMKLSKSFTKKRDAEAISLAVRSLRKEARAWFNEKSGPGPEADDVYAKASAWYHVT 1075
Query: 187 YHHSYWGCYNEDMNRDHFLSFPWCVYDKLIEIKKNKTSIR 68
YH YWGCYNE + RDHFLSFPWCVYDKLI IK+ K SIR
Sbjct: 1076 YHPDYWGCYNEGLKRDHFLSFPWCVYDKLIHIKREKASIR 1115
>ref|XP_002284914.1| PREDICTED: probable RNA-dependent RNA polymerase 1 [Vitis vinifera]
Length = 1121
Score = 1578 bits (4086), Expect = 0.0
Identities = 786/1118 (70%), Positives = 914/1118 (81%), Gaps = 2/1118 (0%)
Frame = -3
Query: 3412 MGKTIQVYGFPSGVTAEAVKNLLQSHTGEETIYAIKVRLPKNGALRAYAIVQFTTDASAV 3233
M KTIQVYGFPS V+A+ +K L+ +TGE TI A++++ P++GA +A VQFT+ A
Sbjct: 1 MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSGASMTHAKVQFTSFELAE 60
Query: 3232 TIISLANSRRLWYGRSYLNARPMENDIVPRPRTFLYTMESIKLSFGCKISKEKFAVLWRG 3053
II+L +++WYGR+YL AR M+ DI+P+PR FL++M+ I L FGC++S E+F VLW+
Sbjct: 61 FIITLCK-KKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWKA 119
Query: 3052 VNVTVNFGFGMRKINFLLSHLETEYRLELAYENIWEIELHSPHGQTAKYLLIQLLGAPRI 2873
+NV+V FG G+RK F LSH EY+LEL+YENIW+I+L P GQ K+LLIQLLGAP+I
Sbjct: 120 INVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAPQI 179
Query: 2872 FKKDVCSSDLVYESLLFNFFMEIPDDQWVRARDFTPSNCIGQSTGLCLELPYGLELPDFQ 2693
++KDV +L +F E PDDQWVR DFTPS IGQS LCLELPYG +LP+F+
Sbjct: 180 YEKDV--------PVLSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPNFR 231
Query: 2692 ENFAYYRESRGNFTLETGFAYSKSLDLVPIVGPPAGITLPYEILFKINLLVQNGCVPGPL 2513
ENFAYY+E+ G F LE+G +YS +L LVPI+GPP G +LP++ILFKIN LVQNGC+ GP
Sbjct: 232 ENFAYYKENDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLSGPT 291
Query: 2512 LDSNFYRLVDPCRTNVSMSCIEHALDKLYHFKECCYEPSRWLTEQYTKYITSGRMPRLPA 2333
LD++F+RLVDP R +S IEHAL+KLYH KECCYEP RWL+EQY Y+ + PA
Sbjct: 292 LDTSFFRLVDPERFPISF--IEHALEKLYHLKECCYEPVRWLSEQYRTYVKKP-VAGSPA 348
Query: 2332 INLDDGLVYVHRLQVTPSKVYFSGPEINVSNRVLRHFRGYIDNFLRVSFIDEDLDKIHSN 2153
I+LD GLVYV R+Q+TP KVYF GPE+NVSNRVLR++ IDNFLRVSF+DE+L+KIHS
Sbjct: 349 ISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKIHST 408
Query: 2152 DLSPRGSSATEIRRTEIYERILSTLHDGIVIGDKKFEFLAFSSSQLRESSTWMFASTDGL 1973
+SPR S E RRT +Y RILS L +GIVIGDKKF+FLAFSSSQLR++S WMFAS GL
Sbjct: 409 VISPRMSK--EGRRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASRPGL 466
Query: 1972 TAAVIREWMGNFRQIRNVAKYAARLGQSFSSSTETLNVGKNEIEIIPDVKIESGNTTYVF 1793
TAA IR WMG+F QIRNVAKYAARLGQSFSSS ETL V K+EIE IPD++I G TTYVF
Sbjct: 467 TAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTTYVF 526
Query: 1792 SDGIGKISSEFSMKVASKCGLKDSPPSAFQIRYGGYKGVVAVDPTSSKKLSLRDSMCKYE 1613
SDGIGKIS + + +VA KCG K S PSAFQIRYGGYKGVVAVDPTSS+KLSLR SM KYE
Sbjct: 527 SDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYE 586
Query: 1612 SELMKLDVLAWSKYQPCFLNRQLISLLSTLGIPDEVFEKKQREAVRQLDDILRDPLKAQE 1433
S+ LDVLAWSKYQP FLNRQLI+LLSTLG+ D VFEKKQR AV QLD IL+DP+ AQE
Sbjct: 587 SDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQE 646
Query: 1432 ALELMSPGENTNILKEMLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 1253
ALELMSPGENTN+LKEML+CGYKPDAEPFLSMMLQTFRA+KLLELRTKTRIF+PNGRSMM
Sbjct: 647 ALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMM 706
Query: 1252 GCLDETRTLDYGQVFVQFSGAGYRQLFDEYSVFGSSGS-RQRFIVEGRVVVAKNPCLHPG 1076
GCLDETRTL+YG+VFVQ SG G RQ F + +F SGS FI+EG++VVAKNPCLHPG
Sbjct: 707 GCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGSHHDNFILEGKIVVAKNPCLHPG 766
Query: 1075 DVRVLRAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDSELIPRKHDEP 896
DVRVL AVNVP LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD +LIP + P
Sbjct: 767 DVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQINP 826
Query: 895 MDYAPAPSTQLDHDVRIEEVEEYFTNYIVNDSLGIISNAHTVFADREPLKARSDPCLQLA 716
MDY PAP+ LDHDV IEEVEEYFTNYIVNDSLGII+NAHTVFAD+E KA DPC +LA
Sbjct: 827 MDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELA 886
Query: 715 EKFSIAVDFPKTGVPADIPRHLYVKEYPDFMEKPDKPTYESNNVIGKLFREVKDISPQTS 536
+ FSIAVDFPKTGVPA+IPR+L VKEYPDFMEK DKPTYES +VIGKLFREVKDI+P
Sbjct: 887 KLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNC 946
Query: 535 CIRLFTKEVARRSYDPDMEVDGFEDHIHDAFYHKGNYDYKLGNLMDYYGIKTEAEILSGG 356
IR FT++VAR+SYDPDMEV GFED++ DAFY+K YDYKLGNLMDYYGIKTE+EILSG
Sbjct: 947 NIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGS 1006
Query: 355 ILKMSKSFTKRRDAEAIGLAVRSLRKEARAWFKEKRSGLDYE-DDAYAKASAWYHVTYHH 179
I++MSKSF +R+DAEAIGLAV+SLRKEAR WF + S D E DD YAKASAWYHVTYH
Sbjct: 1007 IMRMSKSFDRRKDAEAIGLAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYHVTYHP 1066
Query: 178 SYWGCYNEDMNRDHFLSFPWCVYDKLIEIKKNKTSIRN 65
YWGCYNE M+RDHFLSFPWCVYDKLI K+ K S R+
Sbjct: 1067 DYWGCYNEGMDRDHFLSFPWCVYDKLIHTKRKKMSGRS 1104
>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1 isoform X1 [Fragaria vesca
subsp. vesca]
Length = 1119
Score = 1547 bits (4006), Expect = 0.0
Identities = 776/1115 (69%), Positives = 913/1115 (81%), Gaps = 2/1115 (0%)
Frame = -3
Query: 3412 MGKTIQVYGFPSGVTAEAVKNLLQSHTGEETIYAIKVRLPKNGALRAYAIVQFTTDASAV 3233
MGKTIQ++GFPSG TAE +K L+ HTGE +++A+K+R K+G R YAI+QF + + A
Sbjct: 1 MGKTIQLHGFPSGQTAENIKEFLEKHTGEGSVFALKLRPAKSGG-RFYAIIQFQSISQAE 59
Query: 3232 TIISLANSRRLWYGRSYLNARPMENDIVPRPRTFLYTMESIKLSFGCKISKEKFAVLWRG 3053
IISLAN+R LWYGRSYLNARP +DIVP+PRTFL+++ + L GC+++K+KF+VLW
Sbjct: 60 KIISLANAR-LWYGRSYLNARPA-HDIVPKPRTFLHSLRDLVLHVGCQVAKDKFSVLWGT 117
Query: 3052 VNVTVNFGFGMRKINFLLSHLETEYRLELAYENIWEIELHSPHGQTAKYLLIQLLGAPRI 2873
V+V+FGFGMR + F L + + YRL+L+YENIW+IELH G++AKYL+IQL G PRI
Sbjct: 118 AEVSVDFGFGMRNLQFRLLYRQKVYRLQLSYENIWQIELHHQRGRSAKYLVIQLYGNPRI 177
Query: 2872 FKKDVCSSD-LVYESLLFNFFMEIPDDQWVRARDFTPSNCIGQSTGLCLELPYGLELPDF 2696
++++VCSS YE + N+F + PDD WVR DFTP +CIGQS+ LCL L ELPDF
Sbjct: 178 YQQEVCSSGGNGYEDM--NYFRD-PDD-WVRTTDFTPGSCIGQSSSLCLVLTSDGELPDF 233
Query: 2695 QENFAYYRESRGNFTLETGFAYSKSLDLVPIVGPPAGITLPYEILFKINLLVQNGCVPGP 2516
+ENFAYY+++ G F LE G +S++ DLVPIVG PAGI LPY+ILFKINLLVQ GC+ GP
Sbjct: 234 EENFAYYKKTDGQFILENGSTFSRNRDLVPIVGSPAGIDLPYDILFKINLLVQQGCLSGP 293
Query: 2515 LLDSNFYRLVDPCRTNVSMSCIEHALDKLYHFKECCYEPSRWLTEQYTKYITSGRMPRLP 2336
LD+NFYRLVDP R +S CIE ALDKL + KE CYEP+ WL E+Y KY+ S + P+
Sbjct: 294 TLDNNFYRLVDPRR--ISRPCIEFALDKLSNLKESCYEPAVWLNEEYRKYMMSKKPPKPA 351
Query: 2335 AINLDDGLVYVHRLQVTPSKVYFSGPEINVSNRVLRHFRGYIDNFLRVSFIDEDLDKIHS 2156
I+LD GLVYV R+Q+TPSKVYFSGPE+NVSNR+LR + IDNFLRVSF+DE+++K++S
Sbjct: 352 LISLDSGLVYVRRVQITPSKVYFSGPEVNVSNRILRQYSSDIDNFLRVSFVDEEMEKLYS 411
Query: 2155 NDLSPRGSSATEIRRTEIYERILSTLHDGIVIGDKKFEFLAFSSSQLRESSTWMFASTDG 1976
DLSPR T R+T IY R+LS L DGIV+G KKFEFLAFSSSQLRE+S WMFA TD
Sbjct: 412 TDLSPR----TSTRKTRIYNRVLSVLRDGIVVGKKKFEFLAFSSSQLRENSLWMFAPTDE 467
Query: 1975 LTAAVIREWMGNFRQIRNVAKYAARLGQSFSSSTETLNVGKNEIEIIPDVKIESGNTTYV 1796
+A IR MG+FRQIRNVAKYAARLGQSF SSTETL+VG+NE+E+IPDV + S YV
Sbjct: 468 DSADTIRAGMGDFRQIRNVAKYAARLGQSFGSSTETLSVGRNEMEVIPDVTVNSCGIKYV 527
Query: 1795 FSDGIGKISSEFSMKVASKCGLKDSPPSAFQIRYGGYKGVVAVDPTSSKKLSLRDSMCKY 1616
FSDGIGKIS++F+ +VA KCG K PSAFQIRYGGYKGVVAVDPTSS KLSLR SM KY
Sbjct: 528 FSDGIGKISADFAERVAKKCGYKAFTPSAFQIRYGGYKGVVAVDPTSSMKLSLRKSMSKY 587
Query: 1615 ESELMKLDVLAWSKYQPCFLNRQLISLLSTLGIPDEVFEKKQREAVRQLDDILRDPLKAQ 1436
ESE KLDVLA SKYQPCFLNRQLI+LLSTL + D VF KKQR AV+QL+ IL DPLKA+
Sbjct: 588 ESENTKLDVLACSKYQPCFLNRQLITLLSTLEVQDHVFLKKQRAAVQQLNAILTDPLKAE 647
Query: 1435 EALELMSPGENTNILKEMLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSM 1256
EAL+LMS GE+TN+LKE+L+CGYKP+ EPFLSMMLQTFRASKLLELRTKTRIFIP+GR+M
Sbjct: 648 EALDLMSAGESTNVLKELLMCGYKPNVEPFLSMMLQTFRASKLLELRTKTRIFIPDGRAM 707
Query: 1255 MGCLDETRTLDYGQVFVQFSGAGYRQLFDEYSVFGSSGSRQRFIVEGRVVVAKNPCLHPG 1076
MGCLDETRTL+YGQVFVQFSG RQLFD+ + S S FI+EG+VVVAKNPCLHPG
Sbjct: 708 MGCLDETRTLEYGQVFVQFSGKRRRQLFDDICIHSSLDSC--FIIEGKVVVAKNPCLHPG 765
Query: 1075 DVRVLRAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDSELIPRKHDEP 896
DVRVLRAVNVP LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD ELIP K +P
Sbjct: 766 DVRVLRAVNVPDLHHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDPELIPPKQIQP 825
Query: 895 MDYAPAPSTQLDHDVRIEEVEEYFTNYIVNDSLGIISNAHTVFADREPLKARSDPCLQLA 716
MDY PAP ++D DV IEEVEEYF NYIVNDSLGII+NAHTVFAD + KA S PCLQLA
Sbjct: 826 MDYTPAPPIEMDQDVTIEEVEEYFVNYIVNDSLGIIANAHTVFADSKLDKAMSHPCLQLA 885
Query: 715 EKFSIAVDFPKTGVPADIPRHLYVKEYPDFMEKPDKPTYESNNVIGKLFREVKDISPQTS 536
+ FSIAVDFPKTGVPA+IP LY KEYPDFMEKPDK TY S+NVIG+LFREVKDI+P S
Sbjct: 886 KLFSIAVDFPKTGVPAEIPPELYAKEYPDFMEKPDKRTYISHNVIGQLFREVKDIAPHDS 945
Query: 535 CIRLFTKEVARRSYDPDMEVDGFEDHIHDAFYHKGNYDYKLGNLMDYYGIKTEAEILSGG 356
I FT++VA + YDPDMEVDGFED++ DAFYHKGNYDYKLGN++DYYGIKTEAEILSG
Sbjct: 946 SIASFTRQVATKCYDPDMEVDGFEDYLEDAFYHKGNYDYKLGNMLDYYGIKTEAEILSGS 1005
Query: 355 ILKMSKSFTKRRDAEAIGLAVRSLRKEARAWFKEKRSGLDY-EDDAYAKASAWYHVTYHH 179
I+ +SKSFTKRRDA+AI +AV+SLRKEARAWF EK +G+D +DD YAKASAWYHVTYH
Sbjct: 1006 IMTLSKSFTKRRDADAINVAVKSLRKEARAWFNEKDTGIDSGDDDVYAKASAWYHVTYHP 1065
Query: 178 SYWGCYNEDMNRDHFLSFPWCVYDKLIEIKKNKTS 74
+Y+G YNE MNR HF+SFPWCV+DKL IKK K +
Sbjct: 1066 NYFGLYNEGMNRAHFISFPWCVFDKLGHIKKEKVN 1100
>ref|XP_010066561.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Eucalyptus grandis]
Length = 1130
Score = 1543 bits (3996), Expect = 0.0
Identities = 774/1114 (69%), Positives = 898/1114 (80%), Gaps = 3/1114 (0%)
Frame = -3
Query: 3412 MGKTIQVYGFPSGVTAEAVKNLLQSHTGEETIYAIKVRLPKNGALRAYAIVQFTTDASAV 3233
MGKTI V+GFPS VT + V+ L+ TG TIYAIKVR K G +R+YAIVQF A
Sbjct: 1 MGKTINVHGFPSLVTVDTVRGCLEQRTGRGTIYAIKVRQDKRG-VRSYAIVQFMNADYAE 59
Query: 3232 TIISLANSRRLWYGRSYLNARPMENDIVPRPRTFLYTMESIKLSFGCKISKEKFAVLWRG 3053
+II LA+ + LWYGRSYL AR +E+DIV RPRT ++ME I L FGC++S ++F+ LW+G
Sbjct: 60 SIILLASRKDLWYGRSYLTARRVEHDIVQRPRTLSHSMEGITLHFGCQVSSKRFSTLWKG 119
Query: 3052 VNVTVNFGFGMRKINFLLSHLETEYRLELAYENIWEIELHSPHGQTAKYLLIQLLGAPRI 2873
VNV++NFG GMRK FLLS+ TEY+LEL+YENIW+IELH G YL+IQL GAP I
Sbjct: 120 VNVSLNFGLGMRKFCFLLSYHNTEYKLELSYENIWQIELHRARGHKTMYLVIQLYGAPYI 179
Query: 2872 FKKDVCSSDLVYESLLFNFFMEIPDDQWVRARDFTPSNCIGQSTGLCLELPYGLELPDFQ 2693
KK V S+ V S +NFF + DDQWVRA DFTPS CIGQS+ +CLE+P LP+F
Sbjct: 180 RKKVVQYSEDVLVSHFYNFFKDGSDDQWVRAIDFTPSACIGQSSAVCLEIPCEYPLPNFH 239
Query: 2692 ENFAYYRESRGNFTLETGFAYSKSLDLVPIVGPPAGITLPYEILFKINLLVQNGCVPGPL 2513
ENF Y+E+ G ++E G +S S DLVPIVGPP G+ LPYEI+FKINLLVQNGC+ GP
Sbjct: 240 ENFVNYKETDGTLSMENGSPFSCSADLVPIVGPPRGVDLPYEIIFKINLLVQNGCLAGPS 299
Query: 2512 LDSNFYRLVDPCRTNVSMSCIEHALDKLYHFKECCYEPSRWLTEQYTKYITSGRMPRLPA 2333
LD +FYR+VDP R + M I ALDKL+H KECCYEPS+WL EQ+ KY+TS +L +
Sbjct: 300 LDLSFYRMVDPRR--MDMDIILDALDKLFHLKECCYEPSQWLIEQHKKYLTSRHSTKLSS 357
Query: 2332 INLDDGLVYVHRLQVTPSKVYFSGPEINVSNRVLRHFRGYIDNFLRVSFIDEDLDKIHSN 2153
I+LD GLVYVHR+Q+TP +VYF GPEINVSN VLR + IDNF+R+SF+DEDLDK++S
Sbjct: 358 ISLDAGLVYVHRVQITPCRVYFFGPEINVSNHVLRSYSENIDNFIRISFVDEDLDKMYST 417
Query: 2152 DLSPRGSSATEIRRTEIYERILSTLHDGIVIGDKKFEFLAFSSSQLRESSTWMFASTDGL 1973
DLSPR +S RT+IYERILS L +GI IGDK FEFLAFSSSQLRE+S WMFA TDG
Sbjct: 418 DLSPRTASGHG--RTDIYERILSILKNGIKIGDKHFEFLAFSSSQLRENSAWMFAPTDGT 475
Query: 1972 TAAVIREWMGNFRQIRNVAKYAARLGQSFSSSTETLNVGKNEIEIIPDVKIES--GNTTY 1799
TAA IR MG F IRNVAKYAARLGQS SSSTETLNVG++E+E+IPD++++S + Y
Sbjct: 476 TAATIRAKMGKFSAIRNVAKYAARLGQSLSSSTETLNVGEDEVELIPDIEVKSLVEDMNY 535
Query: 1798 VFSDGIGKISSEFSMKVASKCGLKDSPPSAFQIRYGGYKGVVAVDPTSSKKLSLRDSMCK 1619
+FSDGIGKIS EF+ KVA KCG K PSAFQIRY GYKGVVAVDPTS KLSLR SM K
Sbjct: 536 IFSDGIGKISGEFARKVARKCGFKGYTPSAFQIRYAGYKGVVAVDPTSCVKLSLRKSMLK 595
Query: 1618 YESELMKLDVLAWSKYQPCFLNRQLISLLSTLGIPDEVFEKKQREAVRQLDDILRDPLKA 1439
YES+ KL+VL WSKYQPCFLNRQLI+LLSTLG+ D VFEKKQ+ AV QL+ IL DPL+A
Sbjct: 596 YESDETKLNVLGWSKYQPCFLNRQLITLLSTLGVRDHVFEKKQKNAVDQLNAILVDPLRA 655
Query: 1438 QEALELMSPGENTNILKEMLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRS 1259
QEAL+LMSPGEN NILKEML CGYKPDAEPFLSMML+TFRA+KL ELRTKTRIF+P GRS
Sbjct: 656 QEALDLMSPGENGNILKEMLKCGYKPDAEPFLSMMLRTFRATKLSELRTKTRIFLPEGRS 715
Query: 1258 MMGCLDETRTLDYGQVFVQFSGAGYRQLFDEYSVFGSSGSRQRFIVEGRVVVAKNPCLHP 1079
MMGCLDET++L+YGQVF+Q+SG +Q++DE VF + S Q F+V+G+VVVAKNPCLHP
Sbjct: 716 MMGCLDETQSLEYGQVFLQYSGRRKQQMWDESIVFIGTDSDQSFVVQGKVVVAKNPCLHP 775
Query: 1078 GDVRVLRAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDSELIPRKHDE 899
GDVRVL A++VPALHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WDSELIP +
Sbjct: 776 GDVRVLTAIDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDSELIPHHQRQ 835
Query: 898 PMDYAPAPSTQLDHDVRIEEVEEYFTNYIVNDSLGIISNAHTVFADREPLKARSDPCLQL 719
PMDY PAPS +LDHDV IEEVEEYF NYI+NDSLGII+NAHTVFAD +P KA CL L
Sbjct: 836 PMDYTPAPSERLDHDVTIEEVEEYFVNYILNDSLGIIANAHTVFADSQPEKAMCPECLDL 895
Query: 718 AEKFSIAVDFPKTGVPADIPRHLYVKEYPDFMEKPDKPTYESNNVIGKLFREVKDISPQT 539
A FSIAVDFPKTGVPA IP +LYVKEYPDFMEK DK +Y SNNVIGKLFREVK+ + +
Sbjct: 896 ARLFSIAVDFPKTGVPAVIPPNLYVKEYPDFMEKLDKSSYPSNNVIGKLFREVKEEAYAS 955
Query: 538 SCIRLFTKEVARRSYDPDMEVDGFEDHIHDAFYHKGNYDYKLGNLMDYYGIKTEAEILSG 359
S IR FT E+AR+SYDP+MEVDGFED++ DAFYHKGNYDYKLGNLM+YYGI TEAEILSG
Sbjct: 956 SSIRKFTLEMARQSYDPEMEVDGFEDYVDDAFYHKGNYDYKLGNLMEYYGIDTEAEILSG 1015
Query: 358 GILKMSKSFTKRRDAEAIGLAVRSLRKEARAWFKEKRSGLDYED-DAYAKASAWYHVTYH 182
I+KMSKSFTKRRDAE+I +AV+SLRKEAR WF +K SG E D YAKASAWYHVTYH
Sbjct: 1016 CIIKMSKSFTKRRDAESITMAVKSLRKEARTWFNDKGSGSYSEPVDEYAKASAWYHVTYH 1075
Query: 181 HSYWGCYNEDMNRDHFLSFPWCVYDKLIEIKKNK 80
YWGCYNE + RDH+LSFPWCVYDKLI+IKK K
Sbjct: 1076 PEYWGCYNEGLKRDHYLSFPWCVYDKLIQIKKEK 1109
>ref|XP_008220919.1| PREDICTED: probable RNA-dependent RNA polymerase 1 [Prunus mume]
Length = 1123
Score = 1541 bits (3991), Expect = 0.0
Identities = 770/1119 (68%), Positives = 909/1119 (81%), Gaps = 2/1119 (0%)
Frame = -3
Query: 3412 MGKTIQVYGFPSGVTAEAVKNLLQSHTGEETIYAIKVRLPKNGALRAYAIVQFTTDASAV 3233
M KTIQ+YGFPSG++AEAV L+ TG+E++YA+K+R +N + YAIVQF A
Sbjct: 1 MVKTIQLYGFPSGLSAEAVSEFLEPITGKESVYAVKLREAQNKRMY-YAIVQFAKSNDAE 59
Query: 3232 TIISLANSRRLWYGRSYLNARPMENDIVPRPRTFLYTMESIKLSFGCKISKEKFAVLWRG 3053
IIS+AN+ L YGR+YLNAR ME DIVPRPRTFL+ +E I L FGCKI+ EK VLW
Sbjct: 60 DIISMANNNALRYGRNYLNARKMERDIVPRPRTFLHRLEDIGLHFGCKIAHEKLHVLWTA 119
Query: 3052 VNVTVNFGFGMRKINFLLSHLETEYRLELAYENIWEIELHSPHGQTA-KYLLIQLLGAPR 2876
+V+V+FG +RK FLL + + EY+L+L+YENI++IE+HSP G+TA KYLLIQL GAPR
Sbjct: 120 NDVSVDFGIKLRKFIFLLKYHDLEYKLQLSYENIYKIEVHSPRGRTAAKYLLIQLCGAPR 179
Query: 2875 IFKKDVCSSDLVYESLLFNFFMEIPDDQWVRARDFTPSNCIGQSTGLCLELPYGLELPDF 2696
I+KKDV S VYE+ N+F + PDDQWVR DFTP IGQS LCLELPYGL+LPDF
Sbjct: 180 IYKKDVRCSGEVYENPFLNYFRDTPDDQWVRTTDFTPPRAIGQSFTLCLELPYGLKLPDF 239
Query: 2695 QENFAYYRESRGNFTLETGFAYSKSLDLVPIVGPPAGITLPYEILFKINLLVQNGCVPGP 2516
QENF Y+ES G + LE+G +YS + DL +V PP G+ +PY+ILFK+N LVQ+G +PGP
Sbjct: 240 QENFPEYKESIGEYILESGSSYSCNPDLGAMVCPPPGVDVPYDILFKVNSLVQHGYLPGP 299
Query: 2515 LLDSNFYRLVDPCRTNVSMSCIEHALDKLYHFKECCYEPSRWLTEQYTKYITSGRMPRLP 2336
LD F+RL+DP R N++++CIE AL+KL+H KE C EPS WL EQY KY+TS + P P
Sbjct: 300 ALDVTFFRLLDPRRMNMNLACIEFALEKLFHLKESCSEPSVWLKEQYRKYLTSKKPPLSP 359
Query: 2335 AINLDDGLVYVHRLQVTPSKVYFSGPEINVSNRVLRHFRGYIDNFLRVSFIDEDLDKIHS 2156
++LD GLVYV R+Q+T +VY GPE+NVSNRVLR++ G IDNF+RVSF+DE+LDK+ +
Sbjct: 360 IMSLDSGLVYVRRVQITSCQVYCCGPEVNVSNRVLRNYPGDIDNFIRVSFVDEELDKLFA 419
Query: 2155 NDLSPRGSSATEIRRTEIYERILSTLHDGIVIGDKKFEFLAFSSSQLRESSTWMFASTDG 1976
+DLSPR S+A +T+IY+RILS L +GIVIG+KKFEFLAFSSSQLRE+S WMFAS G
Sbjct: 420 SDLSPRTSNANGENKTDIYKRILSILRNGIVIGEKKFEFLAFSSSQLRENSMWMFASRRG 479
Query: 1975 LTAAVIREWMGNFRQIRNVAKYAARLGQSFSSSTETLNVGKNEIEIIPDVKIESGNTTYV 1796
LTAA IREWMGNF IRNVAKYAARLGQSF SSTETLNVG++EIE+IPDV S + YV
Sbjct: 480 LTAADIREWMGNFCDIRNVAKYAARLGQSFGSSTETLNVGEHEIEVIPDVV--SCDNKYV 537
Query: 1795 FSDGIGKISSEFSMKVASKCGLKDSPPSAFQIRYGGYKGVVAVDPTSSKKLSLRDSMCKY 1616
FSDGIGKIS++F+ KVA KCG K PSAFQIRYGGYKGVVAVD TS KKLSLR SM KY
Sbjct: 538 FSDGIGKISADFAKKVAVKCGFKGCTPSAFQIRYGGYKGVVAVDRTSYKKLSLRRSMQKY 597
Query: 1615 ESELMKLDVLAWSKYQPCFLNRQLISLLSTLGIPDEVFEKKQREAVRQLDDILRDPLKAQ 1436
ESE KLDVLA SK+QPCFLNRQLI+LLSTLGI + VF +KQR AV+QLD +L DPLKAQ
Sbjct: 598 ESEHTKLDVLACSKFQPCFLNRQLITLLSTLGIQNRVFLEKQRAAVQQLDAMLTDPLKAQ 657
Query: 1435 EALELMSPGENTNILKEMLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSM 1256
EAL++M GE+TNILKE+L+CGYKPD EPF+SMMLQTFRASKLLELRTKTRI IP+GR+M
Sbjct: 658 EALDMMYAGESTNILKELLMCGYKPDVEPFISMMLQTFRASKLLELRTKTRILIPDGRAM 717
Query: 1255 MGCLDETRTLDYGQVFVQFSGAGYRQLFDEYSVFGSSGSRQRFIVEGRVVVAKNPCLHPG 1076
MGCLDETRTL+YG+VFVQFSG + S S Q+FI+EG+VVVAKNPCLHPG
Sbjct: 718 MGCLDETRTLEYGEVFVQFSGKRHI----------GSESNQQFIIEGKVVVAKNPCLHPG 767
Query: 1075 DVRVLRAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDSELIPRKHDEP 896
DVRVL+AV+VP L+HMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD ELIP +P
Sbjct: 768 DVRVLKAVDVPELYHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDDELIPSGQIQP 827
Query: 895 MDYAPAPSTQLDHDVRIEEVEEYFTNYIVNDSLGIISNAHTVFADREPLKARSDPCLQLA 716
MDY PAP +LDHDV IEEVEEYF NY+VNDSLGII+NAHT FADREP KA S PC++LA
Sbjct: 828 MDYTPAPPIELDHDVTIEEVEEYFVNYMVNDSLGIIANAHTAFADREPSKAMSKPCIELA 887
Query: 715 EKFSIAVDFPKTGVPADIPRHLYVKEYPDFMEKPDKPTYESNNVIGKLFREVKDISPQTS 536
+ FSIAVDFPKTGVPA IP+HL VKE+PDFMEKPDKPTY+S NVIG+LFREVKD+ P
Sbjct: 888 KLFSIAVDFPKTGVPAIIPQHLRVKEFPDFMEKPDKPTYQSCNVIGELFREVKDVEPHGG 947
Query: 535 CIRLFTKEVARRSYDPDMEVDGFEDHIHDAFYHKGNYDYKLGNLMDYYGIKTEAEILSGG 356
IR F++EVAR+SYD DMEVDGFED+I DA Y+K NYD LGNL+DYYGIKTEAEILSG
Sbjct: 948 SIRSFSREVARQSYDHDMEVDGFEDYIEDALYYKSNYDSILGNLLDYYGIKTEAEILSGS 1007
Query: 355 ILKMSKSFTKRRDAEAIGLAVRSLRKEARAWFKEKRSGLDY-EDDAYAKASAWYHVTYHH 179
++KMSKSFTK+RD + I +AVRSLRK+AR WF EK +GL+ DD YAKASAWYHVTYH
Sbjct: 1008 VMKMSKSFTKKRDMDPINMAVRSLRKDARTWFNEKATGLNSGADDVYAKASAWYHVTYHP 1067
Query: 178 SYWGCYNEDMNRDHFLSFPWCVYDKLIEIKKNKTSIRNA 62
Y+GCYNE +NRDHF+SFPWCVYDKL+ IKK K S+R A
Sbjct: 1068 KYFGCYNEGLNRDHFISFPWCVYDKLVHIKKEKASVRRA 1106
>ref|XP_011075687.1| PREDICTED: probable RNA-dependent RNA polymerase 1 [Sesamum indicum]
gi|747058682|ref|XP_011075688.1| PREDICTED: probable
RNA-dependent RNA polymerase 1 [Sesamum indicum]
gi|747058684|ref|XP_011075689.1| PREDICTED: probable
RNA-dependent RNA polymerase 1 [Sesamum indicum]
Length = 1115
Score = 1539 bits (3984), Expect = 0.0
Identities = 760/1112 (68%), Positives = 902/1112 (81%)
Frame = -3
Query: 3412 MGKTIQVYGFPSGVTAEAVKNLLQSHTGEETIYAIKVRLPKNGALRAYAIVQFTTDASAV 3233
MGKTIQVYGFP + A+ VKN L+ TG+ TI A++V+ K G RAYA VQFT A
Sbjct: 1 MGKTIQVYGFPYLIAADVVKNFLEQQTGQGTIVALEVKPSKKGP-RAYAKVQFTHSRYAE 59
Query: 3232 TIISLANSRRLWYGRSYLNARPMENDIVPRPRTFLYTMESIKLSFGCKISKEKFAVLWRG 3053
I +LA S RL+YG SYL ++DIV PRT+++ ME + L+FGC+ S+EKF+VLW+
Sbjct: 60 MIQNLA-STRLYYGTSYLRVWESDSDIVHNPRTYVHEMEQVTLNFGCQTSREKFSVLWKV 118
Query: 3052 VNVTVNFGFGMRKINFLLSHLETEYRLELAYENIWEIELHSPHGQTAKYLLIQLLGAPRI 2873
+V+V FG GM+K++FLL H EY+L+L+YENIW+I L+ PHGQTAK LLIQL GAPRI
Sbjct: 119 ASVSVKFGTGMKKMHFLLCHNSVEYKLQLSYENIWQIVLYHPHGQTAKLLLIQLFGAPRI 178
Query: 2872 FKKDVCSSDLVYESLLFNFFMEIPDDQWVRARDFTPSNCIGQSTGLCLELPYGLELPDFQ 2693
+KK V ES+ +++F E DDQW+R DFTPS CIGQ++GLCLELPYG+ LP+FQ
Sbjct: 179 YKK-------VSESI-YSYFSETQDDQWIRTTDFTPS-CIGQASGLCLELPYGMRLPNFQ 229
Query: 2692 ENFAYYRESRGNFTLETGFAYSKSLDLVPIVGPPAGITLPYEILFKINLLVQNGCVPGPL 2513
++F YY +S F LE G +S +LDLVPI+ PP G LPY ILFK+ LVQ GC+PGP
Sbjct: 230 DHFVYYSKSENPFHLERGAPFSHNLDLVPILHPPRGFELPYRILFKVCSLVQTGCLPGPK 289
Query: 2512 LDSNFYRLVDPCRTNVSMSCIEHALDKLYHFKECCYEPSRWLTEQYTKYITSGRMPRLPA 2333
LD+ F++LV+P R N +EHAL+KLY+ KECCY+P+ WL EQY KY T+ P P
Sbjct: 290 LDARFFQLVNPQRINTKY--VEHALEKLYYLKECCYDPTTWLMEQYEKYRTAKEQPTSPV 347
Query: 2332 INLDDGLVYVHRLQVTPSKVYFSGPEINVSNRVLRHFRGYIDNFLRVSFIDEDLDKIHSN 2153
I+L DGLVYVHR+QVTP+KVYFSGPE+NVSNRVLRH+ YIDNFLRVSF+DE+ DK++S
Sbjct: 348 ISLGDGLVYVHRVQVTPTKVYFSGPEVNVSNRVLRHYSDYIDNFLRVSFVDEEWDKMYST 407
Query: 2152 DLSPRGSSATEIRRTEIYERILSTLHDGIVIGDKKFEFLAFSSSQLRESSTWMFASTDGL 1973
DLSPR +SA E +T++YERIL TL +GI IG+K FEFLAFSSSQLR++S WMFA T+ L
Sbjct: 408 DLSPRVASADENGKTKLYERILKTLREGIRIGNKNFEFLAFSSSQLRDNSLWMFAPTNNL 467
Query: 1972 TAAVIREWMGNFRQIRNVAKYAARLGQSFSSSTETLNVGKNEIEIIPDVKIESGNTTYVF 1793
A IR+WMG+FR IRNVAKYAARLGQSF SSTETL+VG++EIE IPD++ G T Y+F
Sbjct: 468 NAHYIRQWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGQHEIERIPDIEAVRGGTKYIF 527
Query: 1792 SDGIGKISSEFSMKVASKCGLKDSPPSAFQIRYGGYKGVVAVDPTSSKKLSLRDSMCKYE 1613
SDGIGKIS+EF+ +VA +CG+K+S PSAFQIRYGGYKGVVAVDPTSS KLSLR SM KY+
Sbjct: 528 SDGIGKISAEFARRVAVRCGVKNSTPSAFQIRYGGYKGVVAVDPTSSVKLSLRSSMLKYQ 587
Query: 1612 SELMKLDVLAWSKYQPCFLNRQLISLLSTLGIPDEVFEKKQREAVRQLDDILRDPLKAQE 1433
SE KLDVLAWSKYQPCFLNRQ+I+LLSTLG+ D FE+KQREAV QLDDIL DPL+AQE
Sbjct: 588 SENTKLDVLAWSKYQPCFLNRQIITLLSTLGVKDHAFERKQREAVAQLDDILVDPLRAQE 647
Query: 1432 ALELMSPGENTNILKEMLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 1253
AL+LM+PGENTNILKEML CGYKPD EPFLSMMLQTFRASKLL+LR K RIF+P GR MM
Sbjct: 648 ALDLMAPGENTNILKEMLKCGYKPDGEPFLSMMLQTFRASKLLDLRLKARIFVPQGRQMM 707
Query: 1252 GCLDETRTLDYGQVFVQFSGAGYRQLFDEYSVFGSSGSRQRFIVEGRVVVAKNPCLHPGD 1073
GCLDET TL+YG+VFVQFSGA RQ +E +F S +IV+G+VVVAKNPCLHPGD
Sbjct: 708 GCLDETGTLEYGEVFVQFSGALRRQFNEESIMFNDYMSEYNYIVKGKVVVAKNPCLHPGD 767
Query: 1072 VRVLRAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDSELIPRKHDEPM 893
VRVL+AV+V ALHHMVDCVVFP+KGMRPHPNECSGSDLDGDIYFVCWD +LIP + PM
Sbjct: 768 VRVLKAVDVEALHHMVDCVVFPKKGMRPHPNECSGSDLDGDIYFVCWDPDLIPPRQVSPM 827
Query: 892 DYAPAPSTQLDHDVRIEEVEEYFTNYIVNDSLGIISNAHTVFADREPLKARSDPCLQLAE 713
DY PAP+T LDHDV IEEVEEYFTNYIVNDSLGIISNAHTVFAD+E A S+ CL+LA
Sbjct: 828 DYDPAPTTGLDHDVTIEEVEEYFTNYIVNDSLGIISNAHTVFADKEESMALSESCLELAR 887
Query: 712 KFSIAVDFPKTGVPADIPRHLYVKEYPDFMEKPDKPTYESNNVIGKLFREVKDISPQTSC 533
FSIAVDFPKTGVPA+IP HL VKEYPDFM+KPDK YES VIGKL+REVKDI+P T+
Sbjct: 888 LFSIAVDFPKTGVPAEIPSHLRVKEYPDFMDKPDKTAYESKRVIGKLYREVKDIAPHTTS 947
Query: 532 IRLFTKEVARRSYDPDMEVDGFEDHIHDAFYHKGNYDYKLGNLMDYYGIKTEAEILSGGI 353
+ FTKEVARRSYDPDMEVDGF+D+I +AF +K YDYKLGNLM+YYGIKTEAEILSGGI
Sbjct: 948 SKSFTKEVARRSYDPDMEVDGFKDYIDEAFDYKTEYDYKLGNLMEYYGIKTEAEILSGGI 1007
Query: 352 LKMSKSFTKRRDAEAIGLAVRSLRKEARAWFKEKRSGLDYEDDAYAKASAWYHVTYHHSY 173
+K SK+F +R+DAEAIG+AVRSLR EAR+WFK+ DD YAKASAWYHVTYH +
Sbjct: 1008 MKTSKTFDRRKDAEAIGVAVRSLRNEARSWFKKGSE----SDDPYAKASAWYHVTYHPDF 1063
Query: 172 WGCYNEDMNRDHFLSFPWCVYDKLIEIKKNKT 77
WG YNE + RDH++SFPWCVYDKLI+IK++ +
Sbjct: 1064 WGSYNEGLKRDHYISFPWCVYDKLIKIKEDNS 1095