BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Wisteria21_contig00004213
         (1144 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein...   587   e-165
ref|XP_014509564.1| PREDICTED: protein RTF1 homolog [Vigna radia...   577   e-162
ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein...   574   e-161
gb|KHN13191.1| RNA polymerase-associated protein RTF1 like [Glyc...   566   e-158
gb|KHN10031.1| RNA polymerase-associated protein RTF1 like [Glyc...   566   e-158
gb|KHN07280.1| RNA polymerase-associated protein RTF1 like [Glyc...   566   e-158
ref|XP_007159299.1| hypothetical protein PHAVU_002G226300g [Phas...   565   e-158
gb|KOM31074.1| hypothetical protein LR48_Vigan01g062900 [Vigna a...   561   e-157
ref|XP_004505022.1| PREDICTED: protein RTF1 homolog [Cicer ariet...   557   e-156
ref|XP_013457082.1| RNA polymerase-associated RTF1-like protein ...   536   e-149
ref|XP_004493842.1| PREDICTED: protein RTF1 homolog [Cicer ariet...   514   e-143
ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta...   511   e-142
ref|XP_008228301.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymera...   510   e-142
ref|XP_007217631.1| hypothetical protein PRUPE_ppa002666mg [Prun...   510   e-142
ref|XP_010100559.1| RNA polymerase-associated protein RTF1-like ...   509   e-141
ref|XP_010057458.1| PREDICTED: RNA polymerase-associated protein...   508   e-141
ref|XP_012091565.1| PREDICTED: RNA polymerase-associated protein...   506   e-140
ref|XP_009347098.1| PREDICTED: RNA polymerase-associated protein...   503   e-140
ref|XP_008382360.1| PREDICTED: RNA polymerase-associated protein...   503   e-139
ref|XP_007025691.1| PAF1 complex component isoform 1 [Theobroma ...   501   e-139

>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
            [Glycine max] gi|571466984|ref|XP_006583809.1| PREDICTED:
            RNA polymerase-associated protein RTF1 homolog isoform X2
            [Glycine max] gi|947101511|gb|KRH50003.1| hypothetical
            protein GLYMA_07G194200 [Glycine max]
          Length = 656

 Score =  587 bits (1514), Expect = e-165
 Identities = 301/338 (89%), Positives = 308/338 (91%)
 Frame = -3

Query: 1142 LCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPLEEEFKQWIK 963
            LCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPLEEEFKQW+K
Sbjct: 317  LCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPLEEEFKQWVK 376

Query: 962  EVDRSGGRMPSKQDVLEKKQAIQKITTFVYSAATVKQMLQEKKSASSRPLNIAAEKDRLR 783
            EVDRSGGRMPSKQDVLEKKQAIQK  TFVYSAATVKQMLQEKKSAS+RPLN+AAEKDRLR
Sbjct: 377  EVDRSGGRMPSKQDVLEKKQAIQKAITFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLR 436

Query: 782  RELEIAQSKNDEAEVERIRTRLQELEASRQAQVKDAKALKLAEMNRKNRFENFKNASEMK 603
            RELEIAQSK DEAEVERI+TRL ELEASRQA+ KDAKALKLAEMNRKNRFENFKNASEMK
Sbjct: 437  RELEIAQSKYDEAEVERIKTRLLELEASRQAKQKDAKALKLAEMNRKNRFENFKNASEMK 496

Query: 602  PINTGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAAAGNNGTNGIVADAGINGTGVPVNX 423
            P+NTGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAAAGNN  NG VA AG NGTG PV  
Sbjct: 497  PVNTGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAAAGNNSVNGNVAGAGSNGTGAPVTA 556

Query: 422  XXXXXXXXXXXXXXXXAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKFGGAQGAQSG 243
                            AGKLVDTSAPVDQGTESNMLHNFELPISLALLQKFGGAQGAQ+G
Sbjct: 557  EAGMVATAAALEAAAGAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKFGGAQGAQAG 616

Query: 242  FMARKQKIEATVGFRVMENDGRRHALTLTVSDYKRRRG 129
            FMARKQKIEATVGFRV ENDGRRHALTLTVSDYKRRRG
Sbjct: 617  FMARKQKIEATVGFRVSENDGRRHALTLTVSDYKRRRG 654


>ref|XP_014509564.1| PREDICTED: protein RTF1 homolog [Vigna radiata var. radiata]
            gi|951010508|ref|XP_014509566.1| PREDICTED: protein RTF1
            homolog [Vigna radiata var. radiata]
          Length = 657

 Score =  577 bits (1486), Expect = e-162
 Identities = 291/338 (86%), Positives = 306/338 (90%)
 Frame = -3

Query: 1142 LCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPLEEEFKQWIK 963
            LCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDS PLEEEFKQW+K
Sbjct: 318  LCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSVPLEEEFKQWVK 377

Query: 962  EVDRSGGRMPSKQDVLEKKQAIQKITTFVYSAATVKQMLQEKKSASSRPLNIAAEKDRLR 783
            EVDRSGGRMP+KQDVLEKKQAIQK  TFVYSAATVKQMLQEKKSAS+RPLN+AAEKDRLR
Sbjct: 378  EVDRSGGRMPTKQDVLEKKQAIQKAITFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLR 437

Query: 782  RELEIAQSKNDEAEVERIRTRLQELEASRQAQVKDAKALKLAEMNRKNRFENFKNASEMK 603
            RELEIAQSK+D+AEVERIR RLQELEASRQA+ KDAKALKLAEMNRKNRFENFKNASE+K
Sbjct: 438  RELEIAQSKHDDAEVERIRARLQELEASRQAKQKDAKALKLAEMNRKNRFENFKNASELK 497

Query: 602  PINTGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAAAGNNGTNGIVADAGINGTGVPVNX 423
            P+NTGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAAAGNN  NG+V   G N  GVPV  
Sbjct: 498  PVNTGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAAAGNNSVNGVVVGPGSNSAGVPVTA 557

Query: 422  XXXXXXXXXXXXXXXXAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKFGGAQGAQSG 243
                            AGKLVDTSAPVDQGTESNMLHNFELPISLALLQK+GGAQGAQ+G
Sbjct: 558  EAGMVATAAALEAAADAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKYGGAQGAQAG 617

Query: 242  FMARKQKIEATVGFRVMENDGRRHALTLTVSDYKRRRG 129
            FMARKQ+IEATVGFRV ENDGRRH+LTL+VSDYKRRRG
Sbjct: 618  FMARKQRIEATVGFRVSENDGRRHSLTLSVSDYKRRRG 655


>ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
            max] gi|947071604|gb|KRH20495.1| hypothetical protein
            GLYMA_13G182500 [Glycine max]
          Length = 656

 Score =  574 bits (1480), Expect = e-161
 Identities = 293/338 (86%), Positives = 306/338 (90%)
 Frame = -3

Query: 1142 LCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPLEEEFKQWIK 963
            LCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAP+EEEFKQW+K
Sbjct: 317  LCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPMEEEFKQWVK 376

Query: 962  EVDRSGGRMPSKQDVLEKKQAIQKITTFVYSAATVKQMLQEKKSASSRPLNIAAEKDRLR 783
            EVD SGGRMPSKQDVLEKKQAIQK  TFVYSAATVKQMLQEKKSAS+RPLN+AAEKDRLR
Sbjct: 377  EVDCSGGRMPSKQDVLEKKQAIQKAITFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLR 436

Query: 782  RELEIAQSKNDEAEVERIRTRLQELEASRQAQVKDAKALKLAEMNRKNRFENFKNASEMK 603
            RELEIAQSK+DEAEVERI+TRLQELEASRQA+ KDAKALKLAEMNRKNRFENFKNASE+K
Sbjct: 437  RELEIAQSKHDEAEVERIKTRLQELEASRQAKQKDAKALKLAEMNRKNRFENFKNASELK 496

Query: 602  PINTGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAAAGNNGTNGIVADAGINGTGVPVNX 423
            P+N GLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAAAGNN  NG VA AG N TG PV  
Sbjct: 497  PVNIGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAAAGNNIVNGNVAGAGSNATGAPVTA 556

Query: 422  XXXXXXXXXXXXXXXXAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKFGGAQGAQSG 243
                            AGKLVDTSAPVDQGTESNMLHNFELPISLALLQK+GGA GAQ+G
Sbjct: 557  EAGMVATAAALEAAAGAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKYGGAPGAQAG 616

Query: 242  FMARKQKIEATVGFRVMENDGRRHALTLTVSDYKRRRG 129
            FMARKQ+IE+TVGFRV ENDGRRHALTLTVSDYKRRRG
Sbjct: 617  FMARKQRIESTVGFRVSENDGRRHALTLTVSDYKRRRG 654


>gb|KHN13191.1| RNA polymerase-associated protein RTF1 like [Glycine soja]
          Length = 646

 Score =  566 bits (1458), Expect = e-158
 Identities = 290/338 (85%), Positives = 303/338 (89%)
 Frame = -3

Query: 1142 LCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPLEEEFKQWIK 963
            LCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAP+EEEFKQW+K
Sbjct: 317  LCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPIEEEFKQWVK 376

Query: 962  EVDRSGGRMPSKQDVLEKKQAIQKITTFVYSAATVKQMLQEKKSASSRPLNIAAEKDRLR 783
            EVD SGGRMPSKQDVLEKKQAIQK  TFVYSAATVKQMLQEKKSAS+RPLN+AAEKDRLR
Sbjct: 377  EVDCSGGRMPSKQDVLEKKQAIQKAITFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLR 436

Query: 782  RELEIAQSKNDEAEVERIRTRLQELEASRQAQVKDAKALKLAEMNRKNRFENFKNASEMK 603
            RELEIAQSK+DEAEVERI+TRLQELEASRQA+ KDAKALKLAEMNRKNRFENFKNASE+K
Sbjct: 437  RELEIAQSKHDEAEVERIKTRLQELEASRQAKQKDAKALKLAEMNRKNRFENFKNASELK 496

Query: 602  PINTGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAAAGNNGTNGIVADAGINGTGVPVNX 423
            P+N GLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAAAGNN  NG VA AG NGTG PV  
Sbjct: 497  PVNIGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAAAGNNIVNGNVAGAGSNGTGAPVT- 555

Query: 422  XXXXXXXXXXXXXXXXAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKFGGAQGAQSG 243
                                VDTSAPVDQGTESNMLHNFELPISLALLQK+GGA GAQ+G
Sbjct: 556  ---------VEAGMVAIAAAVDTSAPVDQGTESNMLHNFELPISLALLQKYGGAPGAQAG 606

Query: 242  FMARKQKIEATVGFRVMENDGRRHALTLTVSDYKRRRG 129
            FMARKQ+IE+TVGFRV ENDGRRHALTLTVSDYKRRRG
Sbjct: 607  FMARKQRIESTVGFRVSENDGRRHALTLTVSDYKRRRG 644


>gb|KHN10031.1| RNA polymerase-associated protein RTF1 like [Glycine soja]
          Length = 646

 Score =  566 bits (1458), Expect = e-158
 Identities = 290/338 (85%), Positives = 303/338 (89%)
 Frame = -3

Query: 1142 LCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPLEEEFKQWIK 963
            LCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAP+EEEFKQW+K
Sbjct: 317  LCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPIEEEFKQWVK 376

Query: 962  EVDRSGGRMPSKQDVLEKKQAIQKITTFVYSAATVKQMLQEKKSASSRPLNIAAEKDRLR 783
            EVD SGGRMPSKQDVLEKKQAIQK  TFVYSAATVKQMLQEKKSAS+RPLN+AAEKDRLR
Sbjct: 377  EVDCSGGRMPSKQDVLEKKQAIQKAITFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLR 436

Query: 782  RELEIAQSKNDEAEVERIRTRLQELEASRQAQVKDAKALKLAEMNRKNRFENFKNASEMK 603
            RELEIAQSK+DEAEVERI+TRLQELEASRQA+ KDAKALKLAEMNRKNRFENFKNASE+K
Sbjct: 437  RELEIAQSKHDEAEVERIKTRLQELEASRQAKQKDAKALKLAEMNRKNRFENFKNASELK 496

Query: 602  PINTGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAAAGNNGTNGIVADAGINGTGVPVNX 423
            P+N GLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAAAGNN  NG VA AG NGTG PV  
Sbjct: 497  PVNIGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAAAGNNIVNGNVAGAGSNGTGAPVT- 555

Query: 422  XXXXXXXXXXXXXXXXAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKFGGAQGAQSG 243
                                VDTSAPVDQGTESNMLHNFELPISLALLQK+GGA GAQ+G
Sbjct: 556  ---------VEAGMVAIAAAVDTSAPVDQGTESNMLHNFELPISLALLQKYGGAPGAQAG 606

Query: 242  FMARKQKIEATVGFRVMENDGRRHALTLTVSDYKRRRG 129
            FMARKQ+IE+TVGFRV ENDGRRHALTLTVSDYKRRRG
Sbjct: 607  FMARKQRIESTVGFRVSENDGRRHALTLTVSDYKRRRG 644


>gb|KHN07280.1| RNA polymerase-associated protein RTF1 like [Glycine soja]
          Length = 646

 Score =  566 bits (1458), Expect = e-158
 Identities = 290/338 (85%), Positives = 303/338 (89%)
 Frame = -3

Query: 1142 LCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPLEEEFKQWIK 963
            LCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAP+EEEFKQW+K
Sbjct: 317  LCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPIEEEFKQWVK 376

Query: 962  EVDRSGGRMPSKQDVLEKKQAIQKITTFVYSAATVKQMLQEKKSASSRPLNIAAEKDRLR 783
            EVD SGGRMPSKQDVLEKKQAIQK  TFVYSAATVKQMLQEKKSAS+RPLN+AAEKDRLR
Sbjct: 377  EVDCSGGRMPSKQDVLEKKQAIQKAITFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLR 436

Query: 782  RELEIAQSKNDEAEVERIRTRLQELEASRQAQVKDAKALKLAEMNRKNRFENFKNASEMK 603
            RELEIAQSK+DEAEVERI+TRLQELEASRQA+ KDAKALKLAEMNRKNRFENFKNASE+K
Sbjct: 437  RELEIAQSKHDEAEVERIKTRLQELEASRQAKQKDAKALKLAEMNRKNRFENFKNASELK 496

Query: 602  PINTGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAAAGNNGTNGIVADAGINGTGVPVNX 423
            P+N GLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAAAGNN  NG VA AG NGTG PV  
Sbjct: 497  PVNIGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAAAGNNIVNGNVAGAGSNGTGAPVT- 555

Query: 422  XXXXXXXXXXXXXXXXAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKFGGAQGAQSG 243
                                VDTSAPVDQGTESNMLHNFELPISLALLQK+GGA GAQ+G
Sbjct: 556  ---------VEAGMVAIAAAVDTSAPVDQGTESNMLHNFELPISLALLQKYGGAPGAQAG 606

Query: 242  FMARKQKIEATVGFRVMENDGRRHALTLTVSDYKRRRG 129
            FMARKQ+IE+TVGFRV ENDGRRHALTLTVSDYKRRRG
Sbjct: 607  FMARKQRIESTVGFRVSENDGRRHALTLTVSDYKRRRG 644


>ref|XP_007159299.1| hypothetical protein PHAVU_002G226300g [Phaseolus vulgaris]
            gi|561032714|gb|ESW31293.1| hypothetical protein
            PHAVU_002G226300g [Phaseolus vulgaris]
          Length = 654

 Score =  565 bits (1455), Expect = e-158
 Identities = 287/338 (84%), Positives = 304/338 (89%)
 Frame = -3

Query: 1142 LCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPLEEEFKQWIK 963
            LCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPLEEEFKQW+K
Sbjct: 318  LCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPLEEEFKQWVK 377

Query: 962  EVDRSGGRMPSKQDVLEKKQAIQKITTFVYSAATVKQMLQEKKSASSRPLNIAAEKDRLR 783
            EVDRSGGRMP+KQDVLEKKQAIQK  TFVYSAATVKQMLQEKKSAS+RPLN+AAEKDRLR
Sbjct: 378  EVDRSGGRMPTKQDVLEKKQAIQKAITFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLR 437

Query: 782  RELEIAQSKNDEAEVERIRTRLQELEASRQAQVKDAKALKLAEMNRKNRFENFKNASEMK 603
            RELEIAQSK+DEAEV+RI+ RLQELEASR A+ KDAKALKLAEMNRKNRFENFKNASE+K
Sbjct: 438  RELEIAQSKHDEAEVDRIKARLQELEASRHAKQKDAKALKLAEMNRKNRFENFKNASELK 497

Query: 602  PINTGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAAAGNNGTNGIVADAGINGTGVPVNX 423
            P+NTGLKAGEAGYDPFSRRWTRSRNYY    GEKAAAGNN  NGIVA  G N TG PV  
Sbjct: 498  PVNTGLKAGEAGYDPFSRRWTRSRNYYT---GEKAAAGNNSVNGIVAGPGTNSTGAPVTA 554

Query: 422  XXXXXXXXXXXXXXXXAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKFGGAQGAQSG 243
                            AGKLVDTSAPVDQGTESNMLHNFELPISLALLQK+GGAQGAQ+G
Sbjct: 555  EAGLVATAAALEAAADAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKYGGAQGAQAG 614

Query: 242  FMARKQKIEATVGFRVMENDGRRHALTLTVSDYKRRRG 129
            FMARKQ+IE+TVGFRV+ENDGRRH+LTL+VSDYKRRRG
Sbjct: 615  FMARKQRIESTVGFRVLENDGRRHSLTLSVSDYKRRRG 652


>gb|KOM31074.1| hypothetical protein LR48_Vigan01g062900 [Vigna angularis]
          Length = 579

 Score =  561 bits (1446), Expect = e-157
 Identities = 287/338 (84%), Positives = 306/338 (90%)
 Frame = -3

Query: 1142 LCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPLEEEFKQWIK 963
            LCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDS PLEEEFKQW+K
Sbjct: 254  LCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSVPLEEEFKQWVK 313

Query: 962  EVDRSGGRMPSKQDVLEKKQAIQKITTFVYSAATVKQMLQEKKSASSRPLNIAAEKDRLR 783
            EVDRSGGRMP+KQDVLEKKQAIQK  TFVYSAATVKQMLQEKKSAS+RPLN+AAEKDRLR
Sbjct: 314  EVDRSGGRMPTKQDVLEKKQAIQKAITFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLR 373

Query: 782  RELEIAQSKNDEAEVERIRTRLQELEASRQAQVKDAKALKLAEMNRKNRFENFKNASEMK 603
            RELEIAQSK+DEAEVERIR RLQELEASRQA+ KDAKALKLAEMNRKNRFENFKNASE+K
Sbjct: 374  RELEIAQSKHDEAEVERIRARLQELEASRQAKQKDAKALKLAEMNRKNRFENFKNASELK 433

Query: 602  PINTGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAAAGNNGTNGIVADAGINGTGVPVNX 423
            P+NTGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAAAGNN  N + A+AG+  T   +  
Sbjct: 434  PVNTGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAAAGNNSVN-VTAEAGMVATAAALE- 491

Query: 422  XXXXXXXXXXXXXXXXAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKFGGAQGAQSG 243
                            AGKLVDTSAPVDQGTESNMLHNFELPISLALLQK+GGAQGAQ+G
Sbjct: 492  ------------AAADAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKYGGAQGAQAG 539

Query: 242  FMARKQKIEATVGFRVMENDGRRHALTLTVSDYKRRRG 129
            FMARKQ+IE+TVGFRV+ENDGRRH+LTL+VSDYKRRRG
Sbjct: 540  FMARKQRIESTVGFRVLENDGRRHSLTLSVSDYKRRRG 577


>ref|XP_004505022.1| PREDICTED: protein RTF1 homolog [Cicer arietinum]
            gi|502142571|ref|XP_004505023.1| PREDICTED: protein RTF1
            homolog [Cicer arietinum]
          Length = 658

 Score =  557 bits (1436), Expect = e-156
 Identities = 281/338 (83%), Positives = 303/338 (89%)
 Frame = -3

Query: 1142 LCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPLEEEFKQWIK 963
            LCMVKNVD+S+PDRQYKLEN+TT+KYLNVVWGNESSAARWQMAMVSDS PLEEEFKQW+K
Sbjct: 319  LCMVKNVDSSDPDRQYKLENRTTHKYLNVVWGNESSAARWQMAMVSDSFPLEEEFKQWVK 378

Query: 962  EVDRSGGRMPSKQDVLEKKQAIQKITTFVYSAATVKQMLQEKKSASSRPLNIAAEKDRLR 783
            EV+RSGGRMP+KQDVLEKKQAIQKI TFVYSA TVKQMLQEKKS+SSRPLN+AAEKDRLR
Sbjct: 379  EVERSGGRMPTKQDVLEKKQAIQKIITFVYSADTVKQMLQEKKSSSSRPLNVAAEKDRLR 438

Query: 782  RELEIAQSKNDEAEVERIRTRLQELEASRQAQVKDAKALKLAEMNRKNRFENFKNASEMK 603
            RE+EIAQSKNDEAEVERI+TR+QELEASR A+VKDAKALKLAEMNRKNRFENFKNASE++
Sbjct: 439  REMEIAQSKNDEAEVERIKTRVQELEASRHAKVKDAKALKLAEMNRKNRFENFKNASELR 498

Query: 602  PINTGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAAAGNNGTNGIVADAGINGTGVPVNX 423
            P+N GLKAGEAGYDPFSRRWTRSRNYY AKPGEKAAA  N TN +VADAG N TGVPV  
Sbjct: 499  PVNIGLKAGEAGYDPFSRRWTRSRNYYVAKPGEKAAARKNTTNVLVADAGSNITGVPVTA 558

Query: 422  XXXXXXXXXXXXXXXXAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKFGGAQGAQSG 243
                            AGKLVDTSAPVDQGTESN LHNFELPISLALL K+GGAQGAQ+G
Sbjct: 559  ESGVVATAAALEAAADAGKLVDTSAPVDQGTESNFLHNFELPISLALLHKYGGAQGAQAG 618

Query: 242  FMARKQKIEATVGFRVMENDGRRHALTLTVSDYKRRRG 129
            FMARKQ++EATVGFRV ENDGRRH LTL+V DYKRRRG
Sbjct: 619  FMARKQRMEATVGFRVSENDGRRHVLTLSVGDYKRRRG 656


>ref|XP_013457082.1| RNA polymerase-associated RTF1-like protein [Medicago truncatula]
            gi|657389397|gb|KEH31113.1| RNA polymerase-associated
            RTF1-like protein [Medicago truncatula]
          Length = 655

 Score =  536 bits (1380), Expect = e-149
 Identities = 270/338 (79%), Positives = 296/338 (87%)
 Frame = -3

Query: 1142 LCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPLEEEFKQWIK 963
            LCMVKNVD+S+PDRQYKLENKTTYKYLNVVWGNESSAARWQMAM+SDS PLEEE+KQW+K
Sbjct: 317  LCMVKNVDSSDPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMISDSPPLEEEYKQWVK 376

Query: 962  EVDRSGGRMPSKQDVLEKKQAIQKITTFVYSAATVKQMLQEKKSASSRPLNIAAEKDRLR 783
            EV+RSGGRMPSKQDVL+KKQAI KI TFVYSAATVKQM+QEKKSASSRPLNIAAEKDRLR
Sbjct: 377  EVERSGGRMPSKQDVLDKKQAINKIITFVYSAATVKQMIQEKKSASSRPLNIAAEKDRLR 436

Query: 782  RELEIAQSKNDEAEVERIRTRLQELEASRQAQVKDAKALKLAEMNRKNRFENFKNASEMK 603
             +LE AQ KND+AEVERI+ RL ELEASR A+VKDAKALKLAEMNRKNR ENFKNASE++
Sbjct: 437  SDLERAQGKNDDAEVERIKARLLELEASRHAKVKDAKALKLAEMNRKNRVENFKNASELR 496

Query: 602  PINTGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAAAGNNGTNGIVADAGINGTGVPVNX 423
            P+ TGLK G+AGYDPFSRRWTRSRNYY A P EKAAA NN T G+V+DAG NGTGVPV  
Sbjct: 497  PL-TGLKEGDAGYDPFSRRWTRSRNYYVATPSEKAAALNNNTVGLVSDAGANGTGVPVTA 555

Query: 422  XXXXXXXXXXXXXXXXAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKFGGAQGAQSG 243
                            AGKLVDTSAPVDQGTESN LHNFELP+SLALL K+GGAQGAQ+G
Sbjct: 556  ESGAVATAIALEAAADAGKLVDTSAPVDQGTESNTLHNFELPVSLALLHKYGGAQGAQAG 615

Query: 242  FMARKQKIEATVGFRVMENDGRRHALTLTVSDYKRRRG 129
            FMARKQ+IE+TVGF++ ENDGRRH LTL+V DYKRRRG
Sbjct: 616  FMARKQRIESTVGFKLSENDGRRHVLTLSVGDYKRRRG 653


>ref|XP_004493842.1| PREDICTED: protein RTF1 homolog [Cicer arietinum]
            gi|502110282|ref|XP_004493843.1| PREDICTED: protein RTF1
            homolog [Cicer arietinum]
          Length = 653

 Score =  514 bits (1325), Expect = e-143
 Identities = 257/338 (76%), Positives = 285/338 (84%)
 Frame = -3

Query: 1142 LCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPLEEEFKQWIK 963
            LCMVKNVDAS+PDRQYKL+NKTTYKYLNVVWGNE+SAARWQMAMVSDS PLEEEFKQW+K
Sbjct: 314  LCMVKNVDASDPDRQYKLDNKTTYKYLNVVWGNETSAARWQMAMVSDSPPLEEEFKQWVK 373

Query: 962  EVDRSGGRMPSKQDVLEKKQAIQKITTFVYSAATVKQMLQEKKSASSRPLNIAAEKDRLR 783
            EV+RSGGRM  K DV+EK QAIQKI +FVYSAATVKQM++EKKS S RPLN+AAEKDRL+
Sbjct: 374  EVERSGGRMLMKLDVMEKNQAIQKINSFVYSAATVKQMIEEKKSNSRRPLNVAAEKDRLK 433

Query: 782  RELEIAQSKNDEAEVERIRTRLQELEASRQAQVKDAKALKLAEMNRKNRFENFKNASEMK 603
            R+LEIA+SK D AEVE+I+TRLQELEASR+ Q KDAKAL+L+EMNRKNRFENFKNASE+K
Sbjct: 434  RQLEIAESKKDAAEVEKIKTRLQELEASRKTQAKDAKALRLSEMNRKNRFENFKNASELK 493

Query: 602  PINTGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAAAGNNGTNGIVADAGINGTGVPVNX 423
            P+N GLKAGEAGYDPFSRRWTRSRNYY AK  E+AAAGNN + G V D G NG G  V  
Sbjct: 494  PVNKGLKAGEAGYDPFSRRWTRSRNYYNAKQAEEAAAGNNSSGGAVGDRGSNGVGATVAG 553

Query: 422  XXXXXXXXXXXXXXXXAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKFGGAQGAQSG 243
                            AGKLVDT APVDQGTESN LHNFELPISL +LQKFGGAQG  +G
Sbjct: 554  EAGVVATAEALEAAADAGKLVDTRAPVDQGTESNFLHNFELPISLTILQKFGGAQGVHAG 613

Query: 242  FMARKQKIEATVGFRVMENDGRRHALTLTVSDYKRRRG 129
            F+A+KQ+IE  VGFRV ENDG+ H LTLTVSDYKRRRG
Sbjct: 614  FIAKKQRIEEIVGFRVPENDGKSHMLTLTVSDYKRRRG 651


>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
            gi|223541691|gb|EEF43239.1| RNA polymerase-associated
            protein RTF1, putative [Ricinus communis]
          Length = 660

 Score =  511 bits (1315), Expect = e-142
 Identities = 256/340 (75%), Positives = 290/340 (85%), Gaps = 2/340 (0%)
 Frame = -3

Query: 1142 LCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPLEEEFKQWIK 963
            LC+V+NVDA++PDR YKLENKTTYKYLNV+WGNESSAARWQMAM+SDSAP E+E+KQW++
Sbjct: 319  LCLVRNVDAADPDRPYKLENKTTYKYLNVIWGNESSAARWQMAMISDSAPTEDEYKQWVR 378

Query: 962  EVDRSGGRMPSKQDVLEKKQAIQKITTFVYSAATVKQMLQEKKSASSRPLNIAAEKDRLR 783
            EV+RSGGRMP+KQD+LEKK+AI+K  TFVYSAATVKQMLQEKKSASSRPLN+AAEKDRLR
Sbjct: 379  EVERSGGRMPTKQDILEKKEAIRKSNTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLR 438

Query: 782  RELEIAQSKNDEAEVERIRTRLQELEASRQAQVKDAKALKLAEMNRKNRFENFKNASEMK 603
            RELE+AQSK D+AEVERIR R+QELEASRQ Q KDAKA++LAEMNRKNR ENF+NASE+K
Sbjct: 439  RELEVAQSKQDDAEVERIRARIQELEASRQTQGKDAKAIRLAEMNRKNRAENFRNASELK 498

Query: 602  PINTGLKAGEAGYDPFSRRWTRSRNYYAAKP--GEKAAAGNNGTNGIVADAGINGTGVPV 429
            P+NT LKAGEAGYDPFSRRWTRSRNYY +KP  G+ AAA NN  +G VA A    +   V
Sbjct: 499  PVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPAGGDAAAATNNEASGTVAVANKTESAAGV 558

Query: 428  NXXXXXXXXXXXXXXXXXAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKFGGAQGAQ 249
            +                 AGKLVDT+APVDQGTESN LHNFELPISL  LQKFGGAQGAQ
Sbjct: 559  SAEAGMAATAAALEAAADAGKLVDTAAPVDQGTESNTLHNFELPISLTALQKFGGAQGAQ 618

Query: 248  SGFMARKQKIEATVGFRVMENDGRRHALTLTVSDYKRRRG 129
            +GFMARKQ+IEAT+G RV END +RH LTLTVSDYKRRRG
Sbjct: 619  AGFMARKQRIEATIGCRVSENDEKRHVLTLTVSDYKRRRG 658


>ref|XP_008228301.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase-associated protein
            RTF1 homolog [Prunus mume]
          Length = 648

 Score =  510 bits (1314), Expect = e-142
 Identities = 257/340 (75%), Positives = 293/340 (86%), Gaps = 2/340 (0%)
 Frame = -3

Query: 1142 LCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPLEEEFKQWIK 963
            LCMV+NVDAS+PDR+YKLENKTT+KYLNVVWGNE+SAARWQMAM+SDSAP+EEEFKQW++
Sbjct: 307  LCMVRNVDASDPDRKYKLENKTTHKYLNVVWGNENSAARWQMAMISDSAPVEEEFKQWVR 366

Query: 962  EVDRSGGRMPSKQDVLEKKQAIQKITTFVYSAATVKQMLQEKKSASSRPLNIAAEKDRLR 783
            EV+RSGGR+PSKQDVLEKK+AI+KI TFVYSAATVKQM++EKKSASSRPLNIA EKDRLR
Sbjct: 367  EVERSGGRLPSKQDVLEKKEAIKKINTFVYSAATVKQMIEEKKSASSRPLNIALEKDRLR 426

Query: 782  RELEIAQSKNDEAEVERIRTRLQELEASRQAQVKDAKALKLAEMNRKNRFENFKNASEMK 603
            RELE+AQSK+D+AEV+RI+TRLQ+LEA RQ+Q KD+KA++LAEMNRKNR ENFKNASE+K
Sbjct: 427  RELEVAQSKHDDAEVDRIKTRLQQLEARRQSQGKDSKAVRLAEMNRKNRVENFKNASELK 486

Query: 602  PINTGLKAGEAGYDPFSRRWTRSRNYYAAKPGEK--AAAGNNGTNGIVADAGINGTGVPV 429
            P+ TGLKAGEAGYDPFSRRWTRSRNYY +KPGE+   A      +G +AD   NGT V  
Sbjct: 487  PVKTGLKAGEAGYDPFSRRWTRSRNYYVSKPGEQKGEAEAIVDADGALADIESNGTAVVG 546

Query: 428  NXXXXXXXXXXXXXXXXXAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKFGGAQGAQ 249
                              AGKL+DTSAPVD GTESN++HNFELPISLA LQKFGG QGAQ
Sbjct: 547  AVRAGMAATAAALEAAAGAGKLIDTSAPVDFGTESNLMHNFELPISLATLQKFGGPQGAQ 606

Query: 248  SGFMARKQKIEATVGFRVMENDGRRHALTLTVSDYKRRRG 129
             GF+ARKQ+IEATVG RV ENDGRRHALTLTVSDYKRRRG
Sbjct: 607  EGFLARKQRIEATVGCRVPENDGRRHALTLTVSDYKRRRG 646


>ref|XP_007217631.1| hypothetical protein PRUPE_ppa002666mg [Prunus persica]
            gi|462413781|gb|EMJ18830.1| hypothetical protein
            PRUPE_ppa002666mg [Prunus persica]
          Length = 646

 Score =  510 bits (1314), Expect = e-142
 Identities = 258/340 (75%), Positives = 292/340 (85%), Gaps = 2/340 (0%)
 Frame = -3

Query: 1142 LCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPLEEEFKQWIK 963
            LCMV+NVDAS+PDR+YKLENKTT+KYLNVVWGNE+SAARWQMAM+SDSAPLEEEFKQW++
Sbjct: 305  LCMVRNVDASDPDRKYKLENKTTHKYLNVVWGNENSAARWQMAMISDSAPLEEEFKQWVR 364

Query: 962  EVDRSGGRMPSKQDVLEKKQAIQKITTFVYSAATVKQMLQEKKSASSRPLNIAAEKDRLR 783
            EV+RSGGR+PSKQDVLEKK+AI+KI TFVYSAATVKQM++EKKSASSRPLNIA EKDRLR
Sbjct: 365  EVERSGGRLPSKQDVLEKKEAIKKINTFVYSAATVKQMIEEKKSASSRPLNIALEKDRLR 424

Query: 782  RELEIAQSKNDEAEVERIRTRLQELEASRQAQVKDAKALKLAEMNRKNRFENFKNASEMK 603
            RELE+AQSK+D+AEVERI+TRLQ+LEA RQ+Q KD+KA++LAEMNRKNR ENFKNASE+K
Sbjct: 425  RELEVAQSKHDDAEVERIKTRLQQLEARRQSQGKDSKAVRLAEMNRKNRVENFKNASELK 484

Query: 602  PINTGLKAGEAGYDPFSRRWTRSRNYYAAKPGEK--AAAGNNGTNGIVADAGINGTGVPV 429
            P+ TGLKAGEAGYDPFSRRWTRSRNYY +KPGE+   A      +G +AD   NGT V  
Sbjct: 485  PVKTGLKAGEAGYDPFSRRWTRSRNYYVSKPGEQKGEAEAIVDADGALADIESNGTAVVG 544

Query: 428  NXXXXXXXXXXXXXXXXXAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKFGGAQGAQ 249
                              AGKL+DTSAPVD GTESN++HNFELPISLA LQKFGG QGAQ
Sbjct: 545  AVRAGMAATAAALEAAAGAGKLIDTSAPVDFGTESNLMHNFELPISLATLQKFGGPQGAQ 604

Query: 248  SGFMARKQKIEATVGFRVMENDGRRHALTLTVSDYKRRRG 129
             GF+ARKQ+IEATVG RV ENDGRRHALTLTVSDYKRR G
Sbjct: 605  EGFLARKQRIEATVGCRVPENDGRRHALTLTVSDYKRRMG 644


>ref|XP_010100559.1| RNA polymerase-associated protein RTF1-like protein [Morus notabilis]
            gi|587894274|gb|EXB82802.1| RNA polymerase-associated
            protein RTF1-like protein [Morus notabilis]
          Length = 658

 Score =  509 bits (1312), Expect = e-141
 Identities = 258/340 (75%), Positives = 289/340 (85%), Gaps = 2/340 (0%)
 Frame = -3

Query: 1142 LCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPLEEEFKQWIK 963
            LCMV+NVDASEPDRQYKL+NK T+KYLNVVWGNE+SAARWQMAMVSDS P EEEFKQW++
Sbjct: 317  LCMVRNVDASEPDRQYKLDNKITHKYLNVVWGNENSAARWQMAMVSDSVPNEEEFKQWVR 376

Query: 962  EVDRSGGRMPSKQDVLEKKQAIQKITTFVYSAATVKQMLQEKKSASSRPLNIAAEKDRLR 783
            EV+RSGGRMP+K D+L+KK++I+KI TFVYSAATVKQMLQEKKSAS+RPLNIA EKDRLR
Sbjct: 377  EVERSGGRMPTKHDILDKKESIKKINTFVYSAATVKQMLQEKKSASARPLNIALEKDRLR 436

Query: 782  RELEIAQSKNDEAEVERIRTRLQELEASRQAQVKDAKALKLAEMNRKNRFENFKNASEMK 603
            RELE+AQSKNDE EV+RI+TRLQELEASR+A+  DAKA++LAEMNRKNR ENFKNASE+K
Sbjct: 437  RELEVAQSKNDEVEVDRIKTRLQELEASRKAKQTDAKAIRLAEMNRKNRVENFKNASELK 496

Query: 602  PINTGLKAGEAGYDPFSRRWTRSRNYYAAKPGE--KAAAGNNGTNGIVADAGINGTGVPV 429
            P+NTGLKAGEAGYDPFSRRWTRSRNYY  KPGE  + +  N G NG   DA  NG    V
Sbjct: 497  PVNTGLKAGEAGYDPFSRRWTRSRNYYVGKPGEVKEDSGANAGNNGASTDAENNGRHGIV 556

Query: 428  NXXXXXXXXXXXXXXXXXAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKFGGAQGAQ 249
                              AGKLVDT+APVDQGT SNMLHNFELPISL++LQKFGG QGAQ
Sbjct: 557  AAEAGIAATEAALEAAADAGKLVDTNAPVDQGTVSNMLHNFELPISLSVLQKFGGPQGAQ 616

Query: 248  SGFMARKQKIEATVGFRVMENDGRRHALTLTVSDYKRRRG 129
            +GFMARKQ+IEATVG RV ENDGRRHALTL+V DYKRRRG
Sbjct: 617  AGFMARKQRIEATVGCRVPENDGRRHALTLSVGDYKRRRG 656


>ref|XP_010057458.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Eucalyptus
            grandis] gi|629109481|gb|KCW74627.1| hypothetical protein
            EUGRSUZ_E03353 [Eucalyptus grandis]
          Length = 653

 Score =  508 bits (1308), Expect = e-141
 Identities = 261/340 (76%), Positives = 290/340 (85%), Gaps = 2/340 (0%)
 Frame = -3

Query: 1142 LCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPLEEEFKQWIK 963
            LC+++NVDAS+PDRQYKLENK TYKYLNVVWGNESSAARWQMAMVSDS PLEEEF QW++
Sbjct: 313  LCIIRNVDASDPDRQYKLENKMTYKYLNVVWGNESSAARWQMAMVSDSPPLEEEFNQWVR 372

Query: 962  EVDRSGGRMPSKQDVLEKKQAIQKITTFVYSAATVKQMLQEKKSASSRPLNIAAEKDRLR 783
            EV+RSGGRMPSKQDVLEKK+AI+KI TFVYSAATVKQMLQEKKSASSRP+NIAAEKDRLR
Sbjct: 373  EVERSGGRMPSKQDVLEKKEAIKKINTFVYSAATVKQMLQEKKSASSRPMNIAAEKDRLR 432

Query: 782  RELEIAQSKNDEAEVERIRTRLQELEASRQAQVKDAKALKLAEMNRKNRFENFKNASEMK 603
            RELEIAQ K DEAEV+RI+ +LQ+LEA+RQAQ  DAKA+KLAEMNRKNR ENFKNASE+K
Sbjct: 433  RELEIAQYKEDEAEVKRIKEKLQQLEATRQAQKTDAKAIKLAEMNRKNRVENFKNASELK 492

Query: 602  PINTGLKAGEAGYDPFSRRWTRSRNYYAAKP--GEKAAAGNNGTNGIVADAGINGTGVPV 429
            P+NTGLKAGEAGYDPFSRRWTRSRNYY +KP  G +A   N+  N     A  NG+ VPV
Sbjct: 493  PVNTGLKAGEAGYDPFSRRWTRSRNYYVSKPNGGSEAGGANDNVNVASMVAESNGS-VPV 551

Query: 428  NXXXXXXXXXXXXXXXXXAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKFGGAQGAQ 249
                              AGKLVDT+APVDQGTESN+LHNFELPISL +L+KFGGAQGA 
Sbjct: 552  VSESGVVATVEALEAAADAGKLVDTNAPVDQGTESNLLHNFELPISLNVLRKFGGAQGAL 611

Query: 248  SGFMARKQKIEATVGFRVMENDGRRHALTLTVSDYKRRRG 129
            +GFM+RKQ+IEATVG RV ENDGRRH LTLTVSDYKRRRG
Sbjct: 612  TGFMSRKQRIEATVGCRVPENDGRRHILTLTVSDYKRRRG 651


>ref|XP_012091565.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha
            curcas] gi|643703874|gb|KDP20938.1| hypothetical protein
            JCGZ_21409 [Jatropha curcas]
          Length = 658

 Score =  506 bits (1302), Expect = e-140
 Identities = 252/338 (74%), Positives = 285/338 (84%)
 Frame = -3

Query: 1142 LCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPLEEEFKQWIK 963
            LC+V+NVDA++PDR YKLENKTTYKYLNV+WGNESSAARWQMAMVSDSAP E+E+KQW++
Sbjct: 319  LCLVRNVDAADPDRPYKLENKTTYKYLNVIWGNESSAARWQMAMVSDSAPTEDEYKQWVR 378

Query: 962  EVDRSGGRMPSKQDVLEKKQAIQKITTFVYSAATVKQMLQEKKSASSRPLNIAAEKDRLR 783
            EV+RSGGRMP+KQD+LEKK+AI+K  TFVYSAATVKQMLQEKKSAS+RPLN+AAEKDRLR
Sbjct: 379  EVERSGGRMPTKQDILEKKEAIKKSNTFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLR 438

Query: 782  RELEIAQSKNDEAEVERIRTRLQELEASRQAQVKDAKALKLAEMNRKNRFENFKNASEMK 603
            RELE+AQ K D+AEVERIR R+QELEASRQAQ KDAKA++LAEMNRKNR ENF+NASE+K
Sbjct: 439  RELEVAQMKQDDAEVERIRARIQELEASRQAQEKDAKAIRLAEMNRKNRAENFRNASELK 498

Query: 602  PINTGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAAAGNNGTNGIVADAGINGTGVPVNX 423
            P+NT LKAGEAGYDPFSRRWTRSRNYY +KPG    A     NG  A A  NG       
Sbjct: 499  PVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPGGADVAAEANNNGTAAVAHSNGAATGTLA 558

Query: 422  XXXXXXXXXXXXXXXXAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKFGGAQGAQSG 243
                            AGKLVDT+APVDQGTESN LH+F+LPISL  L+KFGGA+GA++G
Sbjct: 559  EAGMAATAAALEAAADAGKLVDTAAPVDQGTESNTLHDFDLPISLTALEKFGGAKGAKAG 618

Query: 242  FMARKQKIEATVGFRVMENDGRRHALTLTVSDYKRRRG 129
            FMARKQ+IEATVG RV ENDGRRHALTLTVSDYKRRRG
Sbjct: 619  FMARKQQIEATVGCRVPENDGRRHALTLTVSDYKRRRG 656


>ref|XP_009347098.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Pyrus x
            bretschneideri]
          Length = 657

 Score =  503 bits (1296), Expect = e-140
 Identities = 257/340 (75%), Positives = 289/340 (85%), Gaps = 2/340 (0%)
 Frame = -3

Query: 1142 LCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPLEEEFKQWIK 963
            LCMV+NVDAS+PDRQYKLENKTT+KYLNVVWGNE+SAARWQMAM+SDSAPLEEEFKQWI+
Sbjct: 316  LCMVRNVDASDPDRQYKLENKTTHKYLNVVWGNENSAARWQMAMISDSAPLEEEFKQWIR 375

Query: 962  EVDRSGGRMPSKQDVLEKKQAIQKITTFVYSAATVKQMLQEKKSASSRPLNIAAEKDRLR 783
            EV+RSGGR+PSK+DVLEKK+AI+K  +FVYSAATVKQM+QEKKSASSRPLNIA EKDRLR
Sbjct: 376  EVERSGGRLPSKEDVLEKKEAIKKTNSFVYSAATVKQMIQEKKSASSRPLNIALEKDRLR 435

Query: 782  RELEIAQSKNDEAEVERIRTRLQELEASRQAQVKDAKALKLAEMNRKNRFENFKNASEMK 603
            RELE+A+SK D+AEVERI+TRLQ+LEA RQ+Q KD+KA++LAEMNRKNR ENFKNASE+K
Sbjct: 436  RELEVAKSKQDDAEVERIQTRLQQLEARRQSQGKDSKAIRLAEMNRKNRVENFKNASELK 495

Query: 602  PINTGLKAGEAGYDPFSRRWTRSRNYYAAKPGE--KAAAGNNGTNGIVADAGINGTGVPV 429
            P N GLKAGEAGYDPFSRRWTRSRNYY +KPGE  + A      +G +AD   NGT V  
Sbjct: 496  PKNIGLKAGEAGYDPFSRRWTRSRNYYVSKPGEQKEEAEAIAVADGALADIESNGTAVVG 555

Query: 428  NXXXXXXXXXXXXXXXXXAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKFGGAQGAQ 249
                              AGKL+DTSAPVD GTESN+ HNFELPISLA LQKFGG QGAQ
Sbjct: 556  AVRAGMAATAAALEAAAGAGKLIDTSAPVDFGTESNLKHNFELPISLAALQKFGGPQGAQ 615

Query: 248  SGFMARKQKIEATVGFRVMENDGRRHALTLTVSDYKRRRG 129
             GF+ARKQ+IEATVG +V ENDGRRHALTLTVSDYKRRRG
Sbjct: 616  KGFLARKQRIEATVGCQVPENDGRRHALTLTVSDYKRRRG 655


>ref|XP_008382360.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Malus
            domestica]
          Length = 657

 Score =  503 bits (1295), Expect = e-139
 Identities = 257/340 (75%), Positives = 288/340 (84%), Gaps = 2/340 (0%)
 Frame = -3

Query: 1142 LCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPLEEEFKQWIK 963
            LCMV+NVDAS+PDRQYKLENKTT+KYLNVVWGNE+SAARWQMAM+SDSAPLEEEFKQWI+
Sbjct: 316  LCMVRNVDASDPDRQYKLENKTTHKYLNVVWGNENSAARWQMAMISDSAPLEEEFKQWIR 375

Query: 962  EVDRSGGRMPSKQDVLEKKQAIQKITTFVYSAATVKQMLQEKKSASSRPLNIAAEKDRLR 783
            EV+RSGGR+PSK+DVLEKK+AI+K  +FVYSAATVKQM+QEKKSASSRPLNIA EKDRLR
Sbjct: 376  EVERSGGRLPSKEDVLEKKEAIKKTNSFVYSAATVKQMIQEKKSASSRPLNIALEKDRLR 435

Query: 782  RELEIAQSKNDEAEVERIRTRLQELEASRQAQVKDAKALKLAEMNRKNRFENFKNASEMK 603
            RELE+A+SK D+AEVERI TRLQ+LEA RQ+Q KD+KA++LAEMNRKNR ENFKNASE+K
Sbjct: 436  RELEVAKSKQDDAEVERIETRLQQLEARRQSQGKDSKAIRLAEMNRKNRVENFKNASELK 495

Query: 602  PINTGLKAGEAGYDPFSRRWTRSRNYYAAKPGE--KAAAGNNGTNGIVADAGINGTGVPV 429
            P N GLKAGEAGYDPFSRRWTRSRNYY +KPGE  + A      +G +AD   NGT V  
Sbjct: 496  PKNIGLKAGEAGYDPFSRRWTRSRNYYVSKPGEQKEEAEAIAVADGALADIESNGTAVVG 555

Query: 428  NXXXXXXXXXXXXXXXXXAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKFGGAQGAQ 249
                              AGKL+DTSAPVD GTESN+ HNFELPISLA LQKFGG QGAQ
Sbjct: 556  AVRAGMAATAAALEAAAGAGKLIDTSAPVDFGTESNLKHNFELPISLAALQKFGGPQGAQ 615

Query: 248  SGFMARKQKIEATVGFRVMENDGRRHALTLTVSDYKRRRG 129
             GF+ARKQ+IEATVG +V ENDGRRHALTLTVSDYKRRRG
Sbjct: 616  KGFLARKQRIEATVGCQVPENDGRRHALTLTVSDYKRRRG 655


>ref|XP_007025691.1| PAF1 complex component isoform 1 [Theobroma cacao]
            gi|590624750|ref|XP_007025692.1| PAF1 complex component
            isoform 1 [Theobroma cacao] gi|508781057|gb|EOY28313.1|
            PAF1 complex component isoform 1 [Theobroma cacao]
            gi|508781058|gb|EOY28314.1| PAF1 complex component
            isoform 1 [Theobroma cacao]
          Length = 660

 Score =  501 bits (1289), Expect = e-139
 Identities = 261/340 (76%), Positives = 288/340 (84%), Gaps = 2/340 (0%)
 Frame = -3

Query: 1142 LCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPLEEEFKQWIK 963
            LCMV+NVDA+EP+R YKLENKTTYKYLNVVWGNESSAARWQMAM+SDS P EEEF+Q I+
Sbjct: 321  LCMVRNVDATEPERTYKLENKTTYKYLNVVWGNESSAARWQMAMISDSPPQEEEFRQLIR 380

Query: 962  EVDRSGGRMPSKQDVLEKKQAIQKITTFVYSAATVKQMLQEKKSASSRPLNIAAEKDRLR 783
            E++RSGGRMPSKQDVLEKK+A+QK  TFVYSAATVKQMLQEKKS SSRPLNIAAEKDRLR
Sbjct: 381  ELERSGGRMPSKQDVLEKKEALQKAKTFVYSAATVKQMLQEKKSTSSRPLNIAAEKDRLR 440

Query: 782  RELEIAQSKNDEAEVERIRTRLQELEASRQAQVKDAKALKLAEMNRKNRFENFKNASEMK 603
            R+LEIAQSK+DEAEVERI+ RLQ+LEASRQAQ KDAKA++LAEMNRKNR ENFKNASE+K
Sbjct: 441  RDLEIAQSKHDEAEVERIKMRLQQLEASRQAQEKDAKAVRLAEMNRKNRAENFKNASELK 500

Query: 602  PINTGLKAGEAGYDPFSRRWTRSRNYYAAK-PGEKAAAGNNGTN-GIVADAGINGTGVPV 429
            P+NTGLKAGEAGYDPFSRRWTRSRNYY AK PG  AAA  NG   G++A    NG     
Sbjct: 501  PVNTGLKAGEAGYDPFSRRWTRSRNYYVAKPPGADAAAVANGDRIGVIASG--NGNDARA 558

Query: 428  NXXXXXXXXXXXXXXXXXAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKFGGAQGAQ 249
                              AGKLVDTSAPVD+GTESNMLH+FE+PISL  LQ+FGG QGA 
Sbjct: 559  AAEAGRAATVAALQEAAGAGKLVDTSAPVDEGTESNMLHDFEIPISLNALQRFGGPQGAV 618

Query: 248  SGFMARKQKIEATVGFRVMENDGRRHALTLTVSDYKRRRG 129
            +GFMARKQ+IEATVG +V ENDGRRHALTLTVSDYKRRRG
Sbjct: 619  AGFMARKQRIEATVGCQVPENDGRRHALTLTVSDYKRRRG 658