BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Stemona21_contig00041160
         (559 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAX68207.1| Copia-like retrotransposon [Helianthus annuus]         46   1e-06

>emb|CAX68207.1| Copia-like retrotransposon [Helianthus annuus]
          Length = 1358

 Score = 45.8 bits (107), Expect(2) = 1e-06
 Identities = 19/51 (37%), Positives = 33/51 (64%)
 Frame = -1

Query: 550 WEALNSQYQFSEAGKIKFLVVHYDDFCMVEDRPFIDQINELDKIASELKGL 398
           W+AL  +Y+  E G  K+L+  Y DF MV+D+  ++Q++EL  + ++L  L
Sbjct: 99  WKALEDKYKAHEEGTNKYLIAKYLDFQMVDDKSILEQVHELQVLVNKLTAL 149



 Score = 32.3 bits (72), Expect(2) = 1e-06
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
 Frame = -3

Query: 308 EKQLVHLQMVEPHSFEARGKGKMIEQGSS----------SGRGALHRKLEGRKFNVGQRP 159
           ++ L HL++ E    E R + K  + GSS           G+GA  R    +KF   ++ 
Sbjct: 187 DELLKHLRIEE----ETRNRDKRGKVGSSVNHVAGGSGQKGKGASSRN---KKFTAPKKK 239

Query: 158 SPTQQSQQYDNPNRKPIGPCFECNQLGHHVNTCN 57
              ++SQ  +N   K  G C  C + GH+   C+
Sbjct: 240 E-FKKSQHTNNHQPKRSGKCHVCGETGHYARECS 272