BLASTX nr result
ID: Stemona21_contig00040118
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Stemona21_contig00040118
(508 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AEZ49458.1| RNA polymerase alpha subunit, partial [Pandanus u... 94 8e-21
gb|AEZ49446.1| RNA polymerase alpha subunit, partial [Fosterella... 89 1e-19
gb|AEX94373.1| RNA polymerase alpha subunit (chloroplast) [Anema... 91 1e-19
gb|AHA12956.1| RNA polymerase alpha subunit [Monocostus uniflorus] 89 2e-19
gb|AEX94383.1| RNA polymerase alpha subunit (chloroplast) [Crinu... 91 2e-19
gb|AEX94382.1| RNA polymerase alpha subunit (chloroplast) [Amary... 91 2e-19
gb|AEX94381.1| RNA polymerase alpha subunit (chloroplast) [Gilli... 93 2e-19
gb|AEX94394.1| RNA polymerase alpha subunit (chloroplast) [Dorya... 90 2e-19
gb|AEZ49453.1| RNA polymerase alpha subunit [Lomandra longifolia] 90 3e-19
gb|AEX94374.1| RNA polymerase alpha subunit (chloroplast) [Camas... 90 3e-19
gb|AEZ49457.1| RNA polymerase alpha subunit, partial [Nolina ato... 90 3e-19
gb|AEX94409.1| RNA polymerase alpha subunit (chloroplast) [Maian... 90 4e-19
gb|AEX94407.1| RNA polymerase alpha subunit (chloroplast) [Ruscu... 90 4e-19
gb|AEX94403.1| RNA polymerase alpha subunit (chloroplast) [Dasyl... 90 4e-19
gb|AEX94402.1| RNA polymerase alpha subunit (chloroplast) [Calib... 90 4e-19
ref|YP_003434007.1| RNA polymerase alpha subunit [Typha latifoli... 89 5e-19
gb|AEX94404.1| RNA polymerase alpha subunit (chloroplast) [Erios... 89 7e-19
gb|AEX94384.1| RNA polymerase alpha subunit (chloroplast) [Eucha... 89 7e-19
gb|AEZ49464.1| RNA polymerase alpha subunit, partial [Sparganium... 89 7e-19
gb|AEX94405.1| RNA polymerase alpha subunit (chloroplast) [Lirio... 89 9e-19
>gb|AEZ49458.1| RNA polymerase alpha subunit, partial [Pandanus utilis]
Length = 317
Score = 93.6 bits (231), Expect(2) = 8e-21
Identities = 60/104 (57%), Positives = 69/104 (66%), Gaps = 10/104 (9%)
Frame = +1
Query: 52 VESRVDNKRIF*GHSVFYFLPTVRSSQY-ITMQRALLG---------TKSENAPQEYSTI 201
VESRVD+KR++ G V L ++ I M+RALLG KSE P EYSTI
Sbjct: 18 VESRVDSKRLYYGRFVLSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSEKVPHEYSTI 77
Query: 202 VGFDPTESVHDILTNLKEIVLRSKLYGVGEASICVKDFIYVTAQ 333
VG + ESVH+ILTNLKEIVLRS LYGV +ASICVK YVTAQ
Sbjct: 78 VGIE--ESVHEILTNLKEIVLRSNLYGVRDASICVKGPRYVTAQ 119
Score = 32.3 bits (72), Expect(2) = 8e-21
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +3
Query: 3 MVREEVARSNQTRQWKC 53
MVREEVA S QT QWKC
Sbjct: 1 MVREEVAGSTQTLQWKC 17
>gb|AEZ49446.1| RNA polymerase alpha subunit, partial [Fosterella caulescens]
Length = 337
Score = 88.6 bits (218), Expect(2) = 1e-19
Identities = 56/104 (53%), Positives = 68/104 (65%), Gaps = 10/104 (9%)
Frame = +1
Query: 52 VESRVDNKRIF*GHSVFYFLPTVRSSQY-ITMQRALLG---------TKSENAPQEYSTI 201
VESRVD+KR++ G + L ++ I M+RALLG KSE P EYSTI
Sbjct: 18 VESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSEKVPHEYSTI 77
Query: 202 VGFDPTESVHDILTNLKEIVLRSKLYGVGEASICVKDFIYVTAQ 333
VG + ES+H+IL NLKEIVLRS LYGV +ASICV+ YVTAQ
Sbjct: 78 VGIE--ESLHEILLNLKEIVLRSNLYGVRDASICVRGPRYVTAQ 119
Score = 33.5 bits (75), Expect(2) = 1e-19
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 3 MVREEVARSNQTRQWKC 53
MVREEVARS +T QWKC
Sbjct: 1 MVREEVARSTRTLQWKC 17
>gb|AEX94373.1| RNA polymerase alpha subunit (chloroplast) [Anemarrhena
asphodeloides]
Length = 339
Score = 90.9 bits (224), Expect(2) = 1e-19
Identities = 58/104 (55%), Positives = 68/104 (65%), Gaps = 10/104 (9%)
Frame = +1
Query: 52 VESRVDNKRIF*GHSVFYFLPTVRSSQY-ITMQRALLG---------TKSENAPQEYSTI 201
VESRVD+KR+F G + L ++ I M+RALLG KSE P EYSTI
Sbjct: 18 VESRVDSKRLFYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSEKVPHEYSTI 77
Query: 202 VGFDPTESVHDILTNLKEIVLRSKLYGVGEASICVKDFIYVTAQ 333
VG + ESVH+IL NLKEIVLRS LYGV +ASICV+ YVTAQ
Sbjct: 78 VGIE--ESVHEILINLKEIVLRSNLYGVRDASICVRGPRYVTAQ 119
Score = 30.8 bits (68), Expect(2) = 1e-19
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 3 MVREEVARSNQTRQWKC 53
MVREE+A S +T QWKC
Sbjct: 1 MVREEIAASTRTLQWKC 17
>gb|AHA12956.1| RNA polymerase alpha subunit [Monocostus uniflorus]
Length = 341
Score = 89.0 bits (219), Expect(2) = 2e-19
Identities = 56/104 (53%), Positives = 68/104 (65%), Gaps = 10/104 (9%)
Frame = +1
Query: 52 VESRVDNKRIF*GHSVFYFLPTVRSSQY-ITMQRALLG---------TKSENAPQEYSTI 201
VESRVD+KR++ G + L ++ I M+RALLG KSE P EYSTI
Sbjct: 18 VESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEMEGTCITCAKSEKVPHEYSTI 77
Query: 202 VGFDPTESVHDILTNLKEIVLRSKLYGVGEASICVKDFIYVTAQ 333
VG + ESVH+IL NLKEIVLRS +YGV +ASICV+ YVTAQ
Sbjct: 78 VGIE--ESVHEILLNLKEIVLRSNIYGVRDASICVRGPKYVTAQ 119
Score = 32.3 bits (72), Expect(2) = 2e-19
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +3
Query: 3 MVREEVARSNQTRQWKC 53
MVREEVARS +T QW+C
Sbjct: 1 MVREEVARSTRTLQWRC 17
>gb|AEX94383.1| RNA polymerase alpha subunit (chloroplast) [Crinum asiaticum]
Length = 339
Score = 90.9 bits (224), Expect(2) = 2e-19
Identities = 58/104 (55%), Positives = 68/104 (65%), Gaps = 10/104 (9%)
Frame = +1
Query: 52 VESRVDNKRIF*GHSVFYFLPTVRSSQY-ITMQRALLG---------TKSENAPQEYSTI 201
VESRVD+KR++ G V L ++ I M+RALLG KSE P EYSTI
Sbjct: 18 VESRVDSKRLYYGRFVLSSLMKGQADTIGIAMRRALLGEIEGTCITRAKSEKVPHEYSTI 77
Query: 202 VGFDPTESVHDILTNLKEIVLRSKLYGVGEASICVKDFIYVTAQ 333
VG + ESVH+IL NLKEIVLRS LYGV +ASICV+ YVTAQ
Sbjct: 78 VGIE--ESVHEILINLKEIVLRSNLYGVRDASICVRGPKYVTAQ 119
Score = 30.4 bits (67), Expect(2) = 2e-19
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 3 MVREEVARSNQTRQWKC 53
MVREE+A S +T QWKC
Sbjct: 1 MVREEIAGSTRTLQWKC 17
>gb|AEX94382.1| RNA polymerase alpha subunit (chloroplast) [Amaryllis belladonna]
Length = 339
Score = 90.9 bits (224), Expect(2) = 2e-19
Identities = 58/104 (55%), Positives = 68/104 (65%), Gaps = 10/104 (9%)
Frame = +1
Query: 52 VESRVDNKRIF*GHSVFYFLPTVRSSQY-ITMQRALLG---------TKSENAPQEYSTI 201
VESRVD+KR+F G + L ++ I M+RALLG KSE P EYSTI
Sbjct: 18 VESRVDSKRLFYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSEKVPHEYSTI 77
Query: 202 VGFDPTESVHDILTNLKEIVLRSKLYGVGEASICVKDFIYVTAQ 333
VG + ESVH+IL NLKEIVLRS LYGV +ASICV+ YVTAQ
Sbjct: 78 VGIE--ESVHEILINLKEIVLRSNLYGVRDASICVRGPRYVTAQ 119
Score = 30.4 bits (67), Expect(2) = 2e-19
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 3 MVREEVARSNQTRQWKC 53
MVREE+A S +T QWKC
Sbjct: 1 MVREEIAGSTRTLQWKC 17
>gb|AEX94381.1| RNA polymerase alpha subunit (chloroplast) [Gilliesia graminea]
Length = 339
Score = 93.2 bits (230), Expect(2) = 2e-19
Identities = 59/106 (55%), Positives = 69/106 (65%), Gaps = 12/106 (11%)
Frame = +1
Query: 52 VESRVDNKRIF*GHSVFYFLPTVRSSQY---ITMQRALLG---------TKSENAPQEYS 195
VESRVD+KR++ G F P ++ Y I M+RALLG KSE P EYS
Sbjct: 18 VESRVDSKRLYYGR--FILSPLMKGQAYTIGIAMRRALLGEIEGTCITRAKSEKMPHEYS 75
Query: 196 TIVGFDPTESVHDILTNLKEIVLRSKLYGVGEASICVKDFIYVTAQ 333
TIVG + ESVH+IL NLKEIVLRS LYGV +ASICV+ YVTAQ
Sbjct: 76 TIVGIE--ESVHEILRNLKEIVLRSNLYGVRDASICVRGPRYVTAQ 119
Score = 27.7 bits (60), Expect(2) = 2e-19
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 3 MVREEVARSNQTRQWKC 53
MV+EE+A S +T QWKC
Sbjct: 1 MVQEEIAGSIRTLQWKC 17
>gb|AEX94394.1| RNA polymerase alpha subunit (chloroplast) [Doryanthes palmeri]
Length = 336
Score = 90.1 bits (222), Expect(2) = 2e-19
Identities = 58/106 (54%), Positives = 69/106 (65%), Gaps = 12/106 (11%)
Frame = +1
Query: 52 VESRVDNKRIF*GHSVFYFLPTVRSSQY---ITMQRALLG---------TKSENAPQEYS 195
VESRVD+KR++ +S F P ++ I M+RALLG KSE P EYS
Sbjct: 18 VESRVDSKRLY--YSRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSEKVPHEYS 75
Query: 196 TIVGFDPTESVHDILTNLKEIVLRSKLYGVGEASICVKDFIYVTAQ 333
TIVG + ESVH+IL NLKEIVLRS LYGV +ASICV+ YVTAQ
Sbjct: 76 TIVGIE--ESVHEILINLKEIVLRSNLYGVRDASICVRGPRYVTAQ 119
Score = 30.8 bits (68), Expect(2) = 2e-19
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +3
Query: 3 MVREEVARSNQTRQWKC 53
MVREEVA S +T QWKC
Sbjct: 1 MVREEVAGSTRTLQWKC 17
>gb|AEZ49453.1| RNA polymerase alpha subunit [Lomandra longifolia]
Length = 342
Score = 90.1 bits (222), Expect(2) = 3e-19
Identities = 56/104 (53%), Positives = 68/104 (65%), Gaps = 10/104 (9%)
Frame = +1
Query: 52 VESRVDNKRIF*GHSVFYFLPTVRSSQY-ITMQRALLG---------TKSENAPQEYSTI 201
VESRVD+KR++ G + L ++ I M+RALLG KSE P EYSTI
Sbjct: 18 VESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSERVPHEYSTI 77
Query: 202 VGFDPTESVHDILTNLKEIVLRSKLYGVGEASICVKDFIYVTAQ 333
VG + ES+H+IL NLKEIVLRS LYGV +ASICVK Y+TAQ
Sbjct: 78 VGIE--ESIHEILINLKEIVLRSNLYGVRDASICVKGPKYITAQ 119
Score = 30.4 bits (67), Expect(2) = 3e-19
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 3 MVREEVARSNQTRQWKC 53
MVREE+A S +T QWKC
Sbjct: 1 MVREEIAGSTRTLQWKC 17
>gb|AEX94374.1| RNA polymerase alpha subunit (chloroplast) [Camassia scilloides]
Length = 339
Score = 89.7 bits (221), Expect(2) = 3e-19
Identities = 57/104 (54%), Positives = 68/104 (65%), Gaps = 10/104 (9%)
Frame = +1
Query: 52 VESRVDNKRIF*GHSVFYFLPTVRSSQY-ITMQRALLG---------TKSENAPQEYSTI 201
VESRVD+KR++ G + L ++ I M+RALLG KSE P EYSTI
Sbjct: 18 VESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSEKVPHEYSTI 77
Query: 202 VGFDPTESVHDILTNLKEIVLRSKLYGVGEASICVKDFIYVTAQ 333
VG + ESVH+IL NLKEIVLRS LYGV +ASICV+ YVTAQ
Sbjct: 78 VGIE--ESVHEILINLKEIVLRSNLYGVRDASICVRGPRYVTAQ 119
Score = 30.8 bits (68), Expect(2) = 3e-19
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 3 MVREEVARSNQTRQWKC 53
MVREE+A S +T QWKC
Sbjct: 1 MVREEIAASTRTLQWKC 17
>gb|AEZ49457.1| RNA polymerase alpha subunit, partial [Nolina atopocarpa]
Length = 337
Score = 90.1 bits (222), Expect(2) = 3e-19
Identities = 58/104 (55%), Positives = 68/104 (65%), Gaps = 10/104 (9%)
Frame = +1
Query: 52 VESRVDNKRIF*GHSVFYFLPTVRSSQY-ITMQRALLG---------TKSENAPQEYSTI 201
VESRVD+KR++ G V L ++ I M+RALLG KSE P EYSTI
Sbjct: 18 VESRVDSKRLYYGRFVLSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSERVPHEYSTI 77
Query: 202 VGFDPTESVHDILTNLKEIVLRSKLYGVGEASICVKDFIYVTAQ 333
VG + ESVH+IL NLKEIVLRS LYGV +ASICV+ YVTAQ
Sbjct: 78 VGIE--ESVHEILINLKEIVLRSNLYGVRDASICVRGPRYVTAQ 119
Score = 30.4 bits (67), Expect(2) = 3e-19
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 3 MVREEVARSNQTRQWKC 53
MVREE+A S +T QWKC
Sbjct: 1 MVREEIAGSTRTLQWKC 17
>gb|AEX94409.1| RNA polymerase alpha subunit (chloroplast) [Maianthemum stellatum]
Length = 339
Score = 89.7 bits (221), Expect(2) = 4e-19
Identities = 57/104 (54%), Positives = 68/104 (65%), Gaps = 10/104 (9%)
Frame = +1
Query: 52 VESRVDNKRIF*GHSVFYFLPTVRSSQY-ITMQRALLG---------TKSENAPQEYSTI 201
VESRVD+KR++ G + L ++ I M+RALLG KSE P EYSTI
Sbjct: 18 VESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSERVPHEYSTI 77
Query: 202 VGFDPTESVHDILTNLKEIVLRSKLYGVGEASICVKDFIYVTAQ 333
VG + ESVH+IL NLKEIVLRS LYGV +ASICV+ YVTAQ
Sbjct: 78 VGIE--ESVHEILINLKEIVLRSNLYGVRDASICVRGPRYVTAQ 119
Score = 30.4 bits (67), Expect(2) = 4e-19
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 3 MVREEVARSNQTRQWKC 53
MVREE+A S +T QWKC
Sbjct: 1 MVREEIAGSTRTLQWKC 17
>gb|AEX94407.1| RNA polymerase alpha subunit (chloroplast) [Ruscus aculeatus]
Length = 339
Score = 89.7 bits (221), Expect(2) = 4e-19
Identities = 57/104 (54%), Positives = 68/104 (65%), Gaps = 10/104 (9%)
Frame = +1
Query: 52 VESRVDNKRIF*GHSVFYFLPTVRSSQY-ITMQRALLG---------TKSENAPQEYSTI 201
VESRVD+KR++ G + L ++ I M+RALLG KSE P EYSTI
Sbjct: 18 VESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSERVPHEYSTI 77
Query: 202 VGFDPTESVHDILTNLKEIVLRSKLYGVGEASICVKDFIYVTAQ 333
VG + ESVH+IL NLKEIVLRS LYGV +ASICV+ YVTAQ
Sbjct: 78 VGIE--ESVHEILINLKEIVLRSNLYGVRDASICVRGPRYVTAQ 119
Score = 30.4 bits (67), Expect(2) = 4e-19
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 3 MVREEVARSNQTRQWKC 53
MVREE+A S +T QWKC
Sbjct: 1 MVREEIAGSTRTLQWKC 17
>gb|AEX94403.1| RNA polymerase alpha subunit (chloroplast) [Dasylirion wheeleri]
Length = 339
Score = 89.7 bits (221), Expect(2) = 4e-19
Identities = 57/104 (54%), Positives = 68/104 (65%), Gaps = 10/104 (9%)
Frame = +1
Query: 52 VESRVDNKRIF*GHSVFYFLPTVRSSQY-ITMQRALLG---------TKSENAPQEYSTI 201
VESRVD+KR++ G + L ++ I M+RALLG KSE P EYSTI
Sbjct: 18 VESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSERVPHEYSTI 77
Query: 202 VGFDPTESVHDILTNLKEIVLRSKLYGVGEASICVKDFIYVTAQ 333
VG + ESVH+IL NLKEIVLRS LYGV +ASICV+ YVTAQ
Sbjct: 78 VGIE--ESVHEILINLKEIVLRSNLYGVRDASICVRGPRYVTAQ 119
Score = 30.4 bits (67), Expect(2) = 4e-19
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 3 MVREEVARSNQTRQWKC 53
MVREE+A S +T QWKC
Sbjct: 1 MVREEIAGSTRTLQWKC 17
>gb|AEX94402.1| RNA polymerase alpha subunit (chloroplast) [Calibanus hookeri]
Length = 339
Score = 89.7 bits (221), Expect(2) = 4e-19
Identities = 57/104 (54%), Positives = 68/104 (65%), Gaps = 10/104 (9%)
Frame = +1
Query: 52 VESRVDNKRIF*GHSVFYFLPTVRSSQY-ITMQRALLG---------TKSENAPQEYSTI 201
VESRVD+KR++ G + L ++ I M+RALLG KSE P EYSTI
Sbjct: 18 VESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSERVPHEYSTI 77
Query: 202 VGFDPTESVHDILTNLKEIVLRSKLYGVGEASICVKDFIYVTAQ 333
VG + ESVH+IL NLKEIVLRS LYGV +ASICV+ YVTAQ
Sbjct: 78 VGIE--ESVHEILINLKEIVLRSNLYGVRDASICVRGPRYVTAQ 119
Score = 30.4 bits (67), Expect(2) = 4e-19
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 3 MVREEVARSNQTRQWKC 53
MVREE+A S +T QWKC
Sbjct: 1 MVREEIAGSTRTLQWKC 17
>ref|YP_003434007.1| RNA polymerase alpha subunit [Typha latifolia]
gi|69215826|gb|AAZ03869.1| RNA polymerase alpha chain
[Typha latifolia] gi|281371804|gb|ADA63731.1| RNA
polymerase alpha subunit [Typha latifolia]
Length = 339
Score = 89.4 bits (220), Expect(2) = 5e-19
Identities = 56/104 (53%), Positives = 68/104 (65%), Gaps = 10/104 (9%)
Frame = +1
Query: 52 VESRVDNKRIF*GHSVFYFLPTVRSSQY-ITMQRALLG---------TKSENAPQEYSTI 201
VESRVD+KR++ G + L ++ I M+RALLG KSE P EYSTI
Sbjct: 18 VESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSERVPHEYSTI 77
Query: 202 VGFDPTESVHDILTNLKEIVLRSKLYGVGEASICVKDFIYVTAQ 333
+G + ESVH+IL NLKEIVLRS LYGV +ASICV+ YVTAQ
Sbjct: 78 IGIE--ESVHEILLNLKEIVLRSNLYGVRDASICVRGPRYVTAQ 119
Score = 30.4 bits (67), Expect(2) = 5e-19
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +3
Query: 3 MVREEVARSNQTRQWKC 53
MVREEVA S +T QWKC
Sbjct: 1 MVREEVAGSTRTIQWKC 17
>gb|AEX94404.1| RNA polymerase alpha subunit (chloroplast) [Eriospermum cervicorne]
Length = 339
Score = 89.0 bits (219), Expect(2) = 7e-19
Identities = 57/104 (54%), Positives = 68/104 (65%), Gaps = 10/104 (9%)
Frame = +1
Query: 52 VESRVDNKRIF*GHSVFYFLPTVRSSQY-ITMQRALLG---------TKSENAPQEYSTI 201
VESRVD+KR++ G V L ++ I M++ALLG KSE P EYSTI
Sbjct: 18 VESRVDSKRLYYGRFVLSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKVPHEYSTI 77
Query: 202 VGFDPTESVHDILTNLKEIVLRSKLYGVGEASICVKDFIYVTAQ 333
VG + ESVH+IL NLKEIVLRS LYGV +ASICV+ YVTAQ
Sbjct: 78 VGIE--ESVHEILINLKEIVLRSNLYGVRDASICVRGPRYVTAQ 119
Score = 30.4 bits (67), Expect(2) = 7e-19
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 3 MVREEVARSNQTRQWKC 53
MVREE+A S +T QWKC
Sbjct: 1 MVREEIAGSTRTLQWKC 17
>gb|AEX94384.1| RNA polymerase alpha subunit (chloroplast) [Eucharis x grandiflora]
Length = 339
Score = 89.0 bits (219), Expect(2) = 7e-19
Identities = 58/104 (55%), Positives = 67/104 (64%), Gaps = 10/104 (9%)
Frame = +1
Query: 52 VESRVDNKRIF*GHSVFYFLPTVRSSQY-ITMQRALLG---------TKSENAPQEYSTI 201
VESRVD+KR+F G V L ++ I M+RALLG K E P EYSTI
Sbjct: 18 VESRVDSKRLFYGRFVLSPLMKGQADTIGIAMRRALLGEIEGTCITRAKFEKVPHEYSTI 77
Query: 202 VGFDPTESVHDILTNLKEIVLRSKLYGVGEASICVKDFIYVTAQ 333
VG + ESVH+IL NLKEIVLRS LYGV +ASICV+ YVTAQ
Sbjct: 78 VGIE--ESVHEILRNLKEIVLRSNLYGVRDASICVRGPRYVTAQ 119
Score = 30.4 bits (67), Expect(2) = 7e-19
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 3 MVREEVARSNQTRQWKC 53
MVREE+A S +T QWKC
Sbjct: 1 MVREEIAGSTRTLQWKC 17
>gb|AEZ49464.1| RNA polymerase alpha subunit, partial [Sparganium eurycarpum]
Length = 337
Score = 89.0 bits (219), Expect(2) = 7e-19
Identities = 55/104 (52%), Positives = 68/104 (65%), Gaps = 10/104 (9%)
Frame = +1
Query: 52 VESRVDNKRIF*GHSVFYFLPTVRSSQY-ITMQRALLG---------TKSENAPQEYSTI 201
VESRVD+KR++ G + L ++ I M+RALLG KSE P EYSTI
Sbjct: 18 VESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSERVPHEYSTI 77
Query: 202 VGFDPTESVHDILTNLKEIVLRSKLYGVGEASICVKDFIYVTAQ 333
+G + ESVH+IL NLKEIVLRS LYGV +ASIC++ YVTAQ
Sbjct: 78 IGIE--ESVHEILLNLKEIVLRSNLYGVRDASICIRGPRYVTAQ 119
Score = 30.4 bits (67), Expect(2) = 7e-19
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +3
Query: 3 MVREEVARSNQTRQWKC 53
MVREEVA S +T QWKC
Sbjct: 1 MVREEVAGSTRTIQWKC 17
>gb|AEX94405.1| RNA polymerase alpha subunit (chloroplast) [Liriope spicata]
Length = 339
Score = 88.6 bits (218), Expect(2) = 9e-19
Identities = 57/104 (54%), Positives = 67/104 (64%), Gaps = 10/104 (9%)
Frame = +1
Query: 52 VESRVDNKRIF*GHSVFYFLPTVRSSQY-ITMQRALLG---------TKSENAPQEYSTI 201
VESRVD+KR++ G + L ++ I M+RALLG KSE P EYSTI
Sbjct: 18 VESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSERVPHEYSTI 77
Query: 202 VGFDPTESVHDILTNLKEIVLRSKLYGVGEASICVKDFIYVTAQ 333
VG + ESVH+IL NLKEIVLRS LYGV +ASICV YVTAQ
Sbjct: 78 VGIE--ESVHEILINLKEIVLRSNLYGVRDASICVMGPRYVTAQ 119
Score = 30.4 bits (67), Expect(2) = 9e-19
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 3 MVREEVARSNQTRQWKC 53
MVREE+A S +T QWKC
Sbjct: 1 MVREEIAGSTRTLQWKC 17