BLASTX nr result

ID: Stemona21_contig00035743 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Stemona21_contig00035743
         (496 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAC95126.1| gag-pol polyprotein [Populus deltoides]               126   3e-27
emb|CAN67459.1| hypothetical protein VITISV_018469 [Vitis vinifera]    62   1e-07
ref|XP_006370795.1| hypothetical protein POPTR_0001s47640g, part...    58   1e-06
gb|ABA26965.1| TO22-2 [Taraxacum officinale]                           57   3e-06

>emb|CAC95126.1| gag-pol polyprotein [Populus deltoides]
          Length = 1382

 Score =  126 bits (316), Expect = 3e-27
 Identities = 75/140 (53%), Positives = 83/140 (59%), Gaps = 6/140 (4%)
 Frame = -2

Query: 402 VGIDECSFCKQKGHWKAQCPKLLSRGXXXXXXXXXXXXPWKLANQSQQRA------YKPP 241
           VG DECSFCKQKGHWKAQCPKL  +              WK  +QSQ  A      YKPP
Sbjct: 240 VGFDECSFCKQKGHWKAQCPKLRQQNQA-----------WKSGSQSQSNAHRSPQGYKPP 288

Query: 240 QPNTAAVAPSSDSSGFGATFSFNPTVAALAEQFQKFLATQPHAISASSPIGLPSPNSGIS 61
             NTAAVA     +        +P    LAEQFQKFL+ QP A+SASS   LP  +SGIS
Sbjct: 289 HHNTAAVASPGSIT--------DPNT--LAEQFQKFLSLQPQAMSASSIGQLPHSSSGIS 338

Query: 60  SSIWILDSGASHHMSPVLSS 1
            S W+LDSGASHHMSP  SS
Sbjct: 339 HSEWVLDSGASHHMSPDSSS 358


>emb|CAN67459.1| hypothetical protein VITISV_018469 [Vitis vinifera]
          Length = 106

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 39/81 (48%), Positives = 49/81 (60%)
 Frame = +2

Query: 2   DDKTGDI**EAPESKIHIEEDIPEFGDGKPIGEDADMACGCVARNF*NCSARAATVGLKE 181
           D K GDI  EAP+SK  ++EDI E        E AD+A GC+ARNF NC+AR   V  ++
Sbjct: 19  DKKLGDIRREAPKSKTLMKEDILEELRVDKF-EWADIAHGCLARNFWNCAAREVIVVFED 77

Query: 182 KVAPNPDESDDGATAAVLGCG 244
            V P PD+  DG T  V+ CG
Sbjct: 78  SVGPIPDKL-DGGTTIVVDCG 97


>ref|XP_006370795.1| hypothetical protein POPTR_0001s47640g, partial [Populus
           trichocarpa] gi|550350099|gb|ERP67364.1| hypothetical
           protein POPTR_0001s47640g, partial [Populus trichocarpa]
          Length = 194

 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 36/84 (42%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
 Frame = -2

Query: 249 KPPQPNTAAVAPSSDSSGFGATFSFNPTVAALAEQFQKFLATQPHAISASSPIG-LPSPN 73
           K PQ NTAA   S   +           ++ +A+QFQKFL+ QP    ASS +  LP  +
Sbjct: 52  KTPQHNTAAAVSSGPFTD----------LSMIAKQFQKFLSLQPQTTYASSFVDQLPHSS 101

Query: 72  SGISSSIWILDSGASHHMSPVLSS 1
            G+S   W+L+SG SHHMSP  SS
Sbjct: 102 LGMSYFGWVLNSGVSHHMSPDFSS 125


>gb|ABA26965.1| TO22-2 [Taraxacum officinale]
          Length = 99

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 32/49 (65%), Positives = 38/49 (77%), Gaps = 2/49 (4%)
 Frame = -2

Query: 141 QKFLATQPHAISAS-SPIGLPSPN-SGISSSIWILDSGASHHMSPVLSS 1
           ++F+A  P A+SAS S  GL S N SGI SS+WILDSGASHHMSP +SS
Sbjct: 1   KQFIAANPTAMSASMSHSGLSSSNTSGIPSSLWILDSGASHHMSPHMSS 49


Top