BLASTX nr result

ID: Stemona21_contig00034846 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Stemona21_contig00034846
         (848 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN66576.1| hypothetical protein VITISV_016964 [Vitis vinifera]   104   4e-34
emb|CAN73567.1| hypothetical protein VITISV_003451 [Vitis vinifera]   105   6e-34
ref|XP_003631792.1| PREDICTED: uncharacterized protein LOC100252...   105   6e-34
ref|XP_003635668.1| PREDICTED: uncharacterized protein LOC100854...   104   1e-33
emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]   103   2e-33
ref|XP_004233808.1| PREDICTED: uncharacterized protein LOC101263...    97   2e-32
ref|XP_006465748.1| PREDICTED: uncharacterized protein LOC102628...   102   2e-31
gb|ABA93966.1| retrotransposon protein, putative, Ty1-copia subc...    93   8e-30
gb|ADN33807.1| ty1-copia retrotransposon protein [Cucumis melo s...    98   2e-29
gb|AAV59441.1| putative polyprotein [Oryza sativa Japonica Group]      91   4e-29
gb|AAW57815.1| putative polyprotein [Oryza sativa Japonica Group]      90   4e-29
gb|AAT81746.1| integrase core domain containing protein [Oryza s...    93   8e-29
emb|CAE05248.2| OSJNBb0115I09.10 [Oryza sativa Japonica Group]         96   1e-28
gb|ABB47865.2| retrotransposon protein, putative, Ty1-copia subc...    95   1e-28
gb|ABA95859.1| retrotransposon protein, putative, Ty1-copia subc...    97   4e-28
gb|ABA91121.1| retrotransposon protein, putative, Ty1-copia subc...    96   5e-28
gb|ABA96132.1| retrotransposon protein, putative, Ty1-copia subc...    96   9e-28
gb|AAP54258.2| retrotransposon protein, putative, Ty1-copia subc...    94   9e-28
gb|AAL31047.1|AC078893_10 putative polyprotein [Oryza sativa Jap...    94   9e-28
gb|ABF94929.1| retrotransposon protein, putative, Ty1-copia subc...    86   2e-27

>emb|CAN66576.1| hypothetical protein VITISV_016964 [Vitis vinifera]
          Length = 1316

 Score =  104 bits (260), Expect(2) = 4e-34
 Identities = 54/103 (52%), Positives = 73/103 (70%)
 Frame = -1

Query: 368 CH*GWTF*LLL*VSGGRSVTVGDSTAVKVLGQDRVDLKMTSGKTLTLHNVQHVPDIRKNL 189
           C   W F     V     + +G+S++ K+ G+ +V LKMTSGK LTL++V HVPDI KNL
Sbjct: 474 CSNKWMFSTYKPVEQNEELFMGNSSSSKIEGRGKVILKMTSGKELTLNDVLHVPDICKNL 533

Query: 188 VSGSLLVQLGFKVVLESNKVVITKGSLFIGKGFVYDGLFKLNV 60
           VSGSLL + GFK+V  S+K V+TK  +F+GKG++ DGLFK+NV
Sbjct: 534 VSGSLLSKNGFKLVFVSDKFVLTKNEMFVGKGYLSDGLFKMNV 576



 Score = 67.4 bits (163), Expect(2) = 4e-34
 Identities = 39/135 (28%), Positives = 66/135 (48%)
 Frame = -2

Query: 844 EIYRS*SSLDENYQVACLLDKLPPSWSNFAKNLRGTHGALTLRHVIQSIRIEDQHRLREI 665
           EI+    S  +++QVA +++KLPP W +F   L+     + L  +I  +RIE+ +R  E 
Sbjct: 341 EIHSEGMSFSDSFQVAAVIEKLPPLWKDFKNYLKHKRKEMNLEELIVRLRIEEDNRKSE- 399

Query: 664 NHARSSNQMKAKVNLTESQPKNRSKTKYQPKSKGQXXXXXXXXXKAKSNTSNSQPGNNDE 485
              + +N M+AK N+ E  PK   K K+  +++ Q           +SN +    G    
Sbjct: 400 --KKGNNSMEAKANVIEQGPKTNKKRKHGDQNQNQ-----------ESNVAKKFKGK--- 443

Query: 484 SFCFVCGRDNHVARD 440
             C+ CG+  H + D
Sbjct: 444 --CYNCGKTGHKSND 456


>emb|CAN73567.1| hypothetical protein VITISV_003451 [Vitis vinifera]
          Length = 1277

 Score =  105 bits (262), Expect(2) = 6e-34
 Identities = 51/91 (56%), Positives = 70/91 (76%)
 Frame = -1

Query: 332 VSGGRSVTVGDSTAVKVLGQDRVDLKMTSGKTLTLHNVQHVPDIRKNLVSGSLLVQLGFK 153
           +  G  V +G+ST  ++ GQ +V LKMTSGK LTL NV +VP+IRKNLV GSLL   GF+
Sbjct: 359 IENGEKVFMGNSTTSEIKGQGKVILKMTSGKELTLTNVLYVPEIRKNLVFGSLLNNHGFR 418

Query: 152 VVLESNKVVITKGSLFIGKGFVYDGLFKLNV 60
           +V ESNKVV++K  +++GKG++ DG++KLNV
Sbjct: 419 LVFESNKVVLSKSGMYVGKGYMSDGMWKLNV 449



 Score = 66.2 bits (160), Expect(2) = 6e-34
 Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 11/178 (6%)
 Frame = -2

Query: 844 EIYRS*SSLDENYQVACLLDKLPPSWSNFAKNLRGTHGALTLRHVIQSIRIEDQHRLREI 665
           EI+     L E +QVA +++KLPP+W +F   L+     +++  +I  +RIE+ +R  E 
Sbjct: 171 EIHADGMMLSETFQVAAIIEKLPPAWKDFKNYLKHKRKEMSIEDLIIRLRIEEDNRRSEK 230

Query: 664 NHARSSNQMKAKVNLTESQPKNRSKTKYQPKSKGQXXXXXXXXXKAKSNTSNSQPGNNDE 485
             A + N+  A+ N  E    +++KT     +KG+          +K      +      
Sbjct: 231 KGAHTLNE--AQANFVEHGQSSKAKTN---NNKGKGSKLGPKGGISKKPKFQGK------ 279

Query: 484 SFCFVCGRDNHVARDCFYRKKEKIVTKKKHDNNSK-----------SEVHVIEAGPSD 344
             CF CG+  H + DC   KK K       DN +K           SEV+++ + P +
Sbjct: 280 --CFNCGKQGHKSVDCRLPKKNKPKEANVIDNITKNVSDIDLTTVVSEVNLVGSNPKE 335


>ref|XP_003631792.1| PREDICTED: uncharacterized protein LOC100252656 [Vitis vinifera]
          Length = 946

 Score =  105 bits (263), Expect(2) = 6e-34
 Identities = 51/91 (56%), Positives = 70/91 (76%)
 Frame = -1

Query: 332 VSGGRSVTVGDSTAVKVLGQDRVDLKMTSGKTLTLHNVQHVPDIRKNLVSGSLLVQLGFK 153
           +  G  V +G+ST  ++ GQ +V LKMTSGK LTL NV +VP+IRKNLVSGSLL   GF+
Sbjct: 359 IENGEKVFMGNSTTSEIKGQGKVILKMTSGKELTLTNVLYVPEIRKNLVSGSLLNNHGFR 418

Query: 152 VVLESNKVVITKGSLFIGKGFVYDGLFKLNV 60
           +V ESNK V++K  +++GKG++ DG++KLNV
Sbjct: 419 LVFESNKFVLSKSGMYVGKGYMSDGMWKLNV 449



 Score = 65.9 bits (159), Expect(2) = 6e-34
 Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 11/178 (6%)
 Frame = -2

Query: 844 EIYRS*SSLDENYQVACLLDKLPPSWSNFAKNLRGTHGALTLRHVIQSIRIEDQHRLREI 665
           EI+     L E +QVA +++KLPP+W +F   L+     +++  +I  +RIE+ +R  E 
Sbjct: 171 EIHAEGMMLSETFQVAAIIEKLPPAWKDFKNCLKHKRKEMSIEDLIIRLRIEEDNRRSEK 230

Query: 664 NHARSSNQMKAKVNLTESQPKNRSKTKYQPKSKGQXXXXXXXXXKAKSNTSNSQPGNNDE 485
               + N+  AK N  E    +++KT     +KG+          +K      +      
Sbjct: 231 KGVHTLNE--AKANFVEHGQSSKAKTN---NNKGKGSKLGPKGGISKKPKFQGK------ 279

Query: 484 SFCFVCGRDNHVARDCFYRKKEKIVTKKKHDNNSK-----------SEVHVIEAGPSD 344
             CF CG+  H + DC   KK K       DN +K           SEV+++ + P +
Sbjct: 280 --CFNCGKQGHKSVDCRLPKKNKPKEANVIDNITKNVSNIDLTAVVSEVNLVGSNPKE 335


>ref|XP_003635668.1| PREDICTED: uncharacterized protein LOC100854178, partial [Vitis
           vinifera]
          Length = 478

 Score =  104 bits (260), Expect(2) = 1e-33
 Identities = 50/91 (54%), Positives = 70/91 (76%)
 Frame = -1

Query: 332 VSGGRSVTVGDSTAVKVLGQDRVDLKMTSGKTLTLHNVQHVPDIRKNLVSGSLLVQLGFK 153
           +  G  V +G+S   ++ GQ +V LKMTSGK LTL NV +VP+IRKNLVSGSLL   GF+
Sbjct: 359 IENGEKVFMGNSATSEIKGQGKVILKMTSGKELTLTNVLYVPEIRKNLVSGSLLNNHGFR 418

Query: 152 VVLESNKVVITKGSLFIGKGFVYDGLFKLNV 60
           +V +SNKVV++K  +++GKG++ DG++KLNV
Sbjct: 419 LVFDSNKVVLSKSGMYVGKGYMSDGMWKLNV 449



 Score = 66.2 bits (160), Expect(2) = 1e-33
 Identities = 48/178 (26%), Positives = 80/178 (44%), Gaps = 11/178 (6%)
 Frame = -2

Query: 844 EIYRS*SSLDENYQVACLLDKLPPSWSNFAKNLRGTHGALTLRHVIQSIRIEDQHRLREI 665
           EI+     L E +QVA +++KLPP+W +F   L+     +++  +I  +RIE+ +R  E 
Sbjct: 171 EIHAEGMMLSETFQVAAIIEKLPPAWKDFKNYLKHKRKEMSIEDLIIRLRIEEDNRRSEK 230

Query: 664 NHARSSNQMKAKVNLTESQPKNRSKTKYQPKSKGQXXXXXXXXXKAKSNTSNSQPGNNDE 485
             A + N+  AK N  E    + +KT     +KG+          +K      +      
Sbjct: 231 KGAHTLNE--AKANFVEHGQSSNAKTN---NNKGKGSKLGPKGGISKKPKFQGK------ 279

Query: 484 SFCFVCGRDNHVARDCFYRKKEK--------IVTKKKHD---NNSKSEVHVIEAGPSD 344
             CF CG+  H + DC   KK K         +TK  +D       SEV+++ + P +
Sbjct: 280 --CFNCGKQGHKSVDCRLPKKNKPKEANVIDDITKNVYDIDLTTVVSEVNLVGSNPKE 335


>emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]
          Length = 1316

 Score =  103 bits (257), Expect(2) = 2e-33
 Identities = 50/91 (54%), Positives = 69/91 (75%)
 Frame = -1

Query: 332 VSGGRSVTVGDSTAVKVLGQDRVDLKMTSGKTLTLHNVQHVPDIRKNLVSGSLLVQLGFK 153
           +  G  V +G+S   ++ GQ +V LKMTSGK LTL NV +VP+IRKNLVSGSLL   GF+
Sbjct: 359 IENGEKVFMGNSATSEIKGQGKVILKMTSGKELTLTNVLYVPEIRKNLVSGSLLNNHGFR 418

Query: 152 VVLESNKVVITKGSLFIGKGFVYDGLFKLNV 60
           +V  SNKVV++K  +++GKG++ DG++KLNV
Sbjct: 419 LVFXSNKVVLSKSGMYVGKGYMSDGMWKLNV 449



 Score = 66.6 bits (161), Expect(2) = 2e-33
 Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 11/178 (6%)
 Frame = -2

Query: 844 EIYRS*SSLDENYQVACLLDKLPPSWSNFAKNLRGTHGALTLRHVIQSIRIEDQHRLREI 665
           EI+     L E +QVA +++KLPP+W +F   L+     +++  +I  +RIE+ +R  E 
Sbjct: 171 EIHAEGMMLSETFQVAAIIEKLPPAWKDFKNYLKHKRKEMSIEDLIIRLRIEEDNRRSEK 230

Query: 664 NHARSSNQMKAKVNLTESQPKNRSKTKYQPKSKGQXXXXXXXXXKAKSNTSNSQPGNNDE 485
             A + N+  AK N  E    +++KT     +KG+          +K      +      
Sbjct: 231 KGAHTLNE--AKANFVEHGQSSKAKTN---NNKGKGSKLGPKGGISKKPKFQGK------ 279

Query: 484 SFCFVCGRDNHVARDCFYRKKEK--------IVTKKKHDNNSK---SEVHVIEAGPSD 344
             CF CG+  H + DC   KK K         +TK  +D +     SEV+++ + P +
Sbjct: 280 --CFNCGKQGHKSVDCRLPKKNKPKEANVIDDITKNVYDIDLTAVVSEVNLVGSNPKE 335


>ref|XP_004233808.1| PREDICTED: uncharacterized protein LOC101263787 [Solanum
            lycopersicum]
          Length = 2703

 Score = 96.7 bits (239), Expect(2) = 2e-32
 Identities = 44/91 (48%), Positives = 70/91 (76%)
 Frame = -1

Query: 332  VSGGRSVTVGDSTAVKVLGQDRVDLKMTSGKTLTLHNVQHVPDIRKNLVSGSLLVQLGFK 153
            V G + + +G+S++ KV+G+  V+LK TS K +TL +V HVPDIRKNLVSG+LL + GFK
Sbjct: 1069 VGGDKVLHMGNSSSAKVVGKGTVELKFTSEKMVTLIDVLHVPDIRKNLVSGTLLSKHGFK 1128

Query: 152  VVLESNKVVITKGSLFIGKGFVYDGLFKLNV 60
            ++ E++K +++K  +F+G G+  +G+FKLN+
Sbjct: 1129 MIFEADKFILSKQGMFVGNGYATNGMFKLNI 1159



 Score = 69.7 bits (169), Expect(2) = 2e-32
 Identities = 50/152 (32%), Positives = 76/152 (50%), Gaps = 1/152 (0%)
 Frame = -2

Query: 823  SLDENYQVACLLDKLPPSWSNFAKNLRGTHGALTLRHVIQSIRIEDQHRLREINHARSSN 644
            +LDEN+ V  ++ KLPPSW  +   L      LTL  ++Q ++IE + R R+ N  R   
Sbjct: 898  ALDENFHVGAIVSKLPPSWKEYRSKLLHKKEDLTLEQLLQHLQIEQETRYRDNNILREP- 956

Query: 643  QMKAKVNLTESQPKNRSKTKYQPKSKGQXXXXXXXXXKAKSNTSNSQPGNNDESF-CFVC 467
             MKA V + E   K  +  K+                KAK + +  +  +N +S  C+ C
Sbjct: 957  IMKAHV-VEEKIKKEPANNKF---------------LKAKKSKNFKRTNSNSKSIKCYHC 1000

Query: 466  GRDNHVARDCFYRKKEKIVTKKKHDNNSKSEV 371
             +  H ARDC   K EK   K+K +NN+K+E+
Sbjct: 1001 HKIGHYARDCKILKAEK--KKEKANNNTKNEL 1030


>ref|XP_006465748.1| PREDICTED: uncharacterized protein LOC102628178 [Citrus sinensis]
          Length = 2248

 Score =  102 bits (255), Expect(2) = 2e-31
 Identities = 51/91 (56%), Positives = 71/91 (78%)
 Frame = -1

Query: 332  VSGGRSVTVGDSTAVKVLGQDRVDLKMTSGKTLTLHNVQHVPDIRKNLVSGSLLVQLGFK 153
            VS G  + +G+S   ++ GQ  V LKMTSGK LTL++V +V +IRKNLVSGSLL + GF+
Sbjct: 1283 VSNGEKLFMGNSAMSEIEGQGNVILKMTSGKELTLNDVLYVLEIRKNLVSGSLLNKHGFQ 1342

Query: 152  VVLESNKVVITKGSLFIGKGFVYDGLFKLNV 60
            +V ESN+VV++K  +++GKG+V DGLFKLN+
Sbjct: 1343 MVFESNRVVLSKNGMYVGKGYVNDGLFKLNI 1373



 Score = 60.5 bits (145), Expect(2) = 2e-31
 Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 9/168 (5%)
 Frame = -2

Query: 820  LDENYQVACLLDKLPPSWSNFAKNLRGTHGALTLRHVIQSIRIEDQHRLREINHARSSNQ 641
            L E +QVA +++KLPP+W +F   L+     + +  ++  +RIE+ +R    N  R    
Sbjct: 1114 LSETFQVAAIIEKLPPTWKDFKSYLKHKCKEMNIEELVVKLRIEEDNR----NAERIGAI 1169

Query: 640  MKAKVNLTESQPKNRSKTKYQPKSKGQXXXXXXXXXKAKSNTSNSQPGNNDESFCFVCGR 461
              AK N+ E +PKN+   K  PK                     S+   N +   F C +
Sbjct: 1170 SMAKANVVEHRPKNKKNKKLGPKG------------------GISKKQTNFQGKYFNCDK 1211

Query: 460  DNHVARDCFYRKKEK------IVTKKKHDNNSK---SEVHVIEAGPSD 344
              H   DC   KK++       +T+   D N     SEV+++ + P +
Sbjct: 1212 MGHKVSDCRLPKKKREENVVENITQHVSDINLSAVVSEVNLVGSNPRE 1259


>gb|ABA93966.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1212

 Score = 93.2 bits (230), Expect(2) = 8e-30
 Identities = 49/91 (53%), Positives = 63/91 (69%)
 Frame = -1

Query: 332 VSGGRSVTVGDSTAVKVLGQDRVDLKMTSGKTLTLHNVQHVPDIRKNLVSGSLLVQLGFK 153
           V+ G +V +G+ +   V G   VDLK TSGK + L NVQHVP I +NLVSGS L + GFK
Sbjct: 308 VARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFK 367

Query: 152 VVLESNKVVITKGSLFIGKGFVYDGLFKLNV 60
           +V ESNKVVI+K   FIGKG+   GLF+ ++
Sbjct: 368 LVFESNKVVISKHGYFIGKGYECGGLFRFSL 398



 Score = 64.7 bits (156), Expect(2) = 8e-30
 Identities = 39/140 (27%), Positives = 65/140 (46%)
 Frame = -2

Query: 814 ENYQVACLLDKLPPSWSNFAKNLRGTHGALTLRHVIQSIRIEDQHRLREINHARSSNQMK 635
           + +   C++ KLPPSW  F   L+      ++  +I S+ +E++ R ++        Q  
Sbjct: 143 DKFVAGCIIAKLPPSWRGFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSN 202

Query: 634 AKVNLTESQPKNRSKTKYQPKSKGQXXXXXXXXXKAKSNTSNSQPGNNDESFCFVCGRDN 455
           A V     + +N+SK KY+ +               K   +N+ P N DE  CFVCG+  
Sbjct: 203 ANV---VHKAQNKSKGKYKAQQTTNFK---------KQKKNNNNP-NQDERTCFVCGQPG 249

Query: 454 HVARDCFYRKKEKIVTKKKH 395
           H+AR C  RK  K   ++ +
Sbjct: 250 HLARKCPQRKGMKAPARQTY 269


>gb|ADN33807.1| ty1-copia retrotransposon protein [Cucumis melo subsp. melo]
          Length = 1038

 Score = 97.8 bits (242), Expect(2) = 2e-29
 Identities = 48/87 (55%), Positives = 66/87 (75%)
 Frame = -1

Query: 323 GRSVTVGDSTAVKVLGQDRVDLKMTSGKTLTLHNVQHVPDIRKNLVSGSLLVQLGFKVVL 144
           G  V +G+S    V+G+ +V LK+TSGKTL+L NV +VP +R+NLVSGSLL + G K+VL
Sbjct: 361 GECVFMGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVL 420

Query: 143 ESNKVVITKGSLFIGKGFVYDGLFKLN 63
           E +KVV+TK   F+GKG++ +GLF LN
Sbjct: 421 EGDKVVLTKNGNFVGKGYLSNGLFVLN 447



 Score = 58.9 bits (141), Expect(2) = 2e-29
 Identities = 42/153 (27%), Positives = 72/153 (47%)
 Frame = -2

Query: 814 ENYQVACLLDKLPPSWSNFAKNLRGTHGALTLRHVIQSIRIEDQHRLREINHARSSNQMK 635
           E  Q   LL+K PPSW+++  +L+     L L  +I  +R E+ +RL++   +++ N + 
Sbjct: 179 EILQANVLLEKFPPSWNDYRNHLKHKKKDLKLHELISHMRTEEANRLKDKLASQNLNSVN 238

Query: 634 AKVNLTESQPKNRSKTKYQPKSKGQXXXXXXXXXKAKSNTSNSQPGNNDESFCFVCGRDN 455
           A  NL ES   NR +TK +   KG+         K +  T+  Q     +  C+VC ++ 
Sbjct: 239 A--NLVESSFVNRDRTKQEKGHKGK------NSEKRQFKTTGGQI-KKKKLVCYVCRKEG 289

Query: 454 HVARDCFYRKKEKIVTKKKHDNNSKSEVHVIEA 356
           H +  C  RK           N ++ +  +I A
Sbjct: 290 HKSYQCNQRKGRPSQKPTPQANLAEQDSEIIAA 322


>gb|AAV59441.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1225

 Score = 90.5 bits (223), Expect(2) = 4e-29
 Identities = 47/91 (51%), Positives = 62/91 (68%)
 Frame = -1

Query: 332 VSGGRSVTVGDSTAVKVLGQDRVDLKMTSGKTLTLHNVQHVPDIRKNLVSGSLLVQLGFK 153
           V+ G +V +G+ +   V G   VDL  TSGK + L NVQHVP I +NLVSGS L + GFK
Sbjct: 300 VARGSTVLMGNGSHASVHGVGMVDLMFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFK 359

Query: 152 VVLESNKVVITKGSLFIGKGFVYDGLFKLNV 60
           +V ESNKVV++K   FIGKG+   GLF+ ++
Sbjct: 360 LVFESNKVVVSKHGYFIGKGYECGGLFRFSL 390



 Score = 65.1 bits (157), Expect(2) = 4e-29
 Identities = 39/135 (28%), Positives = 62/135 (45%)
 Frame = -2

Query: 820 LDENYQVACLLDKLPPSWSNFAKNLRGTHGALTLRHVIQSIRIEDQHRLREINHARSSNQ 641
           L + +   C++ KLPPSW +F   L+      ++  +I S+ +E++ R ++        Q
Sbjct: 141 LPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQ 200

Query: 640 MKAKVNLTESQPKNRSKTKYQPKSKGQXXXXXXXXXKAKSNTSNSQPGNNDESFCFVCGR 461
             A V     + +N+SK KY+ +               K    N+   N DE  CFVCG+
Sbjct: 201 SSANV---VHKAQNKSKGKYKAQQTTNF----------KKQKKNNNNPNQDERTCFVCGQ 247

Query: 460 DNHVARDCFYRKKEK 416
             H+AR C  RK  K
Sbjct: 248 VGHLARKCPQRKGMK 262


>gb|AAW57815.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1109

 Score = 90.1 bits (222), Expect(2) = 4e-29
 Identities = 47/84 (55%), Positives = 58/84 (69%)
 Frame = -1

Query: 323 GRSVTVGDSTAVKVLGQDRVDLKMTSGKTLTLHNVQHVPDIRKNLVSGSLLVQLGFKVVL 144
           G +V +G+ +   V G   VDLK TSGK + L NVQHVP I +NLVSGS L + GFK+V 
Sbjct: 289 GSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTKDGFKLVF 348

Query: 143 ESNKVVITKGSLFIGKGFVYDGLF 72
           ESNKVV++K   FIGKG+   GLF
Sbjct: 349 ESNKVVVSKHGYFIGKGYECGGLF 372



 Score = 65.5 bits (158), Expect(2) = 4e-29
 Identities = 38/131 (29%), Positives = 59/131 (45%)
 Frame = -2

Query: 820 LDENYQVACLLDKLPPSWSNFAKNLRGTHGALTLRHVIQSIRIEDQHRLREINHARSSNQ 641
           L + +   C++ KLPPSW +F   L+      ++  +I S+ IE++ R ++        Q
Sbjct: 141 LPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSIEGLIASLDIEEKAREKDAASKGDGGQ 200

Query: 640 MKAKVNLTESQPKNRSKTKYQPKSKGQXXXXXXXXXKAKSNTSNSQPGNNDESFCFVCGR 461
             A V     +  N+SK KY+ +               K    N+   N DE  CFVCG+
Sbjct: 201 SSANV---VHKAHNKSKGKYKAQQTTNF----------KKQKKNNNNPNQDEGTCFVCGQ 247

Query: 460 DNHVARDCFYR 428
             H+AR C  R
Sbjct: 248 PGHLARKCLQR 258


>gb|AAT81746.1| integrase core domain containing protein [Oryza sativa Japonica
           Group] gi|108708962|gb|ABF96757.1| retrotransposon
           protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1232

 Score = 93.2 bits (230), Expect(2) = 8e-29
 Identities = 47/91 (51%), Positives = 65/91 (71%)
 Frame = -1

Query: 332 VSGGRSVTVGDSTAVKVLGQDRVDLKMTSGKTLTLHNVQHVPDIRKNLVSGSLLVQLGFK 153
           V  G S+++G+ +   V G   VDLK+TSGKT+ L NVQHV  I+KNLVSGSLL + GF+
Sbjct: 391 VGRGSSLSMGNGSLAAVHGVGMVDLKLTSGKTVQLKNVQHVLSIKKNLVSGSLLCREGFR 450

Query: 152 VVLESNKVVITKGSLFIGKGFVYDGLFKLNV 60
           +V ESNK V++K   F+GKG+   GLF+ ++
Sbjct: 451 LVFESNKCVVSKYGTFVGKGYDRGGLFRFSL 481



 Score = 61.2 bits (147), Expect(2) = 8e-29
 Identities = 36/144 (25%), Positives = 66/144 (45%)
 Frame = -2

Query: 847 QEIYRS*SSLDENYQVACLLDKLPPSWSNFAKNLRGTHGALTLRHVIQSIRIEDQHRLRE 668
           +E+  +   L + +    ++ KLPPSWS+FA +L+      ++  +I S+ +E++ R ++
Sbjct: 218 KELENNNCELSDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVSDLIGSLGVEEKARAKD 277

Query: 667 INHARSSNQMKAKVNLTESQPKNRSKTKYQPKSKGQXXXXXXXXXKAKSNTSNSQPGNND 488
             H +      A +   ++   + +  K +P  K +         K K+N          
Sbjct: 278 NRHKKVEGGSSANMVQKKNPHASHNNKKVKPDGKPKATTNFKKKGKGKANGD-------- 329

Query: 487 ESFCFVCGRDNHVARDCFYRKKEK 416
              CFVCG+  H A+DC  RK  K
Sbjct: 330 ---CFVCGKSGHWAKDCPKRKDRK 350


>emb|CAE05248.2| OSJNBb0115I09.10 [Oryza sativa Japonica Group]
          Length = 1321

 Score = 95.5 bits (236), Expect(2) = 1e-28
 Identities = 48/91 (52%), Positives = 64/91 (70%)
 Frame = -1

Query: 332 VSGGRSVTVGDSTAVKVLGQDRVDLKMTSGKTLTLHNVQHVPDIRKNLVSGSLLVQLGFK 153
           V  G S+ +G+ +   V G   VDLK TSGKT+ L NVQHVP I+KNLVSGSLL + GF+
Sbjct: 340 VGRGSSLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFR 399

Query: 152 VVLESNKVVITKGSLFIGKGFVYDGLFKLNV 60
           +V ESNK V++K   F+GKG+   GLF+ ++
Sbjct: 400 LVFESNKCVVSKYGTFVGKGYDSGGLFRFSL 430



 Score = 58.5 bits (140), Expect(2) = 1e-28
 Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 4/148 (2%)
 Frame = -2

Query: 847 QEIYRS*SSLDENYQVACLLDKLPPSWSNFAKNLRGTHGALTLRHVIQSIRIEDQHRLRE 668
           +E+  +   L + +    ++ KLPPSWS+FA +L+      ++  +I S+ +E++ R ++
Sbjct: 167 KELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKD 226

Query: 667 INHAR----SSNQMKAKVNLTESQPKNRSKTKYQPKSKGQXXXXXXXXXKAKSNTSNSQP 500
           +   +    SS  M  K N   S    + K   +PK              A +N      
Sbjct: 227 VRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPK--------------AATNFKKKSK 272

Query: 499 GNNDESFCFVCGRDNHVARDCFYRKKEK 416
           G   +  CFVCG+  H A+DC  RK  K
Sbjct: 273 G-KAKGDCFVCGKSGHWAKDCPERKDRK 299


>gb|ABB47865.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1126

 Score = 95.1 bits (235), Expect(2) = 1e-28
 Identities = 48/91 (52%), Positives = 64/91 (70%)
 Frame = -1

Query: 332 VSGGRSVTVGDSTAVKVLGQDRVDLKMTSGKTLTLHNVQHVPDIRKNLVSGSLLVQLGFK 153
           V  G S+ +G+ +   V G   VDLK TSGKT+ L NVQHVP I+KNLVSGSLL + GF+
Sbjct: 275 VRRGSSLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFR 334

Query: 152 VVLESNKVVITKGSLFIGKGFVYDGLFKLNV 60
           +V ESNK V++K   F+GKG+   GLF+ ++
Sbjct: 335 LVFESNKCVVSKYGTFVGKGYDSGGLFRFSL 365



 Score = 58.9 bits (141), Expect(2) = 1e-28
 Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 4/148 (2%)
 Frame = -2

Query: 847 QEIYRS*SSLDENYQVACLLDKLPPSWSNFAKNLRGTHGALTLRHVIQSIRIEDQHRLRE 668
           +E+  +   L + +    ++ KLPPSWS+FA +L+      ++  +I S+ +E++ R ++
Sbjct: 102 KELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHNRQEFSVPDLIGSLGVEEKARAKD 161

Query: 667 INHAR----SSNQMKAKVNLTESQPKNRSKTKYQPKSKGQXXXXXXXXXKAKSNTSNSQP 500
           +   +    SS  M  K N   S    + K   +PK              A +N      
Sbjct: 162 VQGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPK--------------AATNFKKKSK 207

Query: 499 GNNDESFCFVCGRDNHVARDCFYRKKEK 416
           G   +  CFVCG+  H A+DC  RK  K
Sbjct: 208 G-KAKGDCFVCGKSGHWAKDCPERKDRK 234


>gb|ABA95859.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 503

 Score = 97.4 bits (241), Expect(2) = 4e-28
 Identities = 50/91 (54%), Positives = 64/91 (70%)
 Frame = -1

Query: 332 VSGGRSVTVGDSTAVKVLGQDRVDLKMTSGKTLTLHNVQHVPDIRKNLVSGSLLVQLGFK 153
           V  G S+ +G+ +   V G   VDLK TSGKT+ L NVQHVP I+KNLVSGSLL + GFK
Sbjct: 336 VGRGSSLLMGNGSLAAVHGVSMVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFK 395

Query: 152 VVLESNKVVITKGSLFIGKGFVYDGLFKLNV 60
           +V ESNK V++K   FIGKG+   GLF+ ++
Sbjct: 396 LVFESNKCVVSKYGTFIGKGYDSGGLFRFSL 426



 Score = 54.7 bits (130), Expect(2) = 4e-28
 Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 6/150 (4%)
 Frame = -2

Query: 847 QEIYRS*SSLDENYQVACLLDKLPPSWSNFAKNLRGTHGALTLRHVIQSIRIEDQHRLRE 668
           +E+  +   L + +    ++ KLPPSWS+FA +L+      ++  +I S+ +E++ R ++
Sbjct: 174 KELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVIDLIGSLGVEEKARAKD 233

Query: 667 I------NHARSSNQMKAKVNLTESQPKNRSKTKYQPKSKGQXXXXXXXXXKAKSNTSNS 506
           I      N   S N  K K ++     K ++ T ++ K KG+          AK +    
Sbjct: 234 IWGKKKKNPHASHNNKKVKHDV-----KPKATTNFKKKGKGK----------AKGD---- 274

Query: 505 QPGNNDESFCFVCGRDNHVARDCFYRKKEK 416
                    CFVCG+  H A+DC   K  K
Sbjct: 275 ---------CFVCGKPGHWAKDCPEHKDRK 295


>gb|ABA91121.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1186

 Score = 95.5 bits (236), Expect(2) = 5e-28
 Identities = 48/91 (52%), Positives = 64/91 (70%)
 Frame = -1

Query: 332 VSGGRSVTVGDSTAVKVLGQDRVDLKMTSGKTLTLHNVQHVPDIRKNLVSGSLLVQLGFK 153
           V  G S+ +G+ +   V G   VDLK TSGKT+ L NVQHVP I+KNLVSGSLL + GF+
Sbjct: 463 VGRGSSLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFR 522

Query: 152 VVLESNKVVITKGSLFIGKGFVYDGLFKLNV 60
           +V ESNK V++K   F+GKG+   GLF+ ++
Sbjct: 523 LVFESNKCVVSKYGTFVGKGYDSGGLFRFSL 553



 Score = 56.2 bits (134), Expect(2) = 5e-28
 Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 4/148 (2%)
 Frame = -2

Query: 847 QEIYRS*SSLDENYQVACLLDKLPPSWSNFAKNLRGTHGALTLRHVIQSIRIEDQHRLRE 668
           +E+  +   L + +    ++ KLPPSWS+FA +L+      ++  +I S+ +E++ R ++
Sbjct: 290 KELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKD 349

Query: 667 INHAR----SSNQMKAKVNLTESQPKNRSKTKYQPKSKGQXXXXXXXXXKAKSNTSNSQP 500
           +   +    SS  M  K N   S    + K   +PK                +N      
Sbjct: 350 VRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPK--------------VATNFKKKGK 395

Query: 499 GNNDESFCFVCGRDNHVARDCFYRKKEK 416
           G   +  CFVCG+  H A+DC  RK  K
Sbjct: 396 G-KAKGDCFVCGKSGHWAKDCPERKDRK 422


>gb|ABA96132.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1357

 Score = 95.5 bits (236), Expect(2) = 9e-28
 Identities = 48/91 (52%), Positives = 64/91 (70%)
 Frame = -1

Query: 332 VSGGRSVTVGDSTAVKVLGQDRVDLKMTSGKTLTLHNVQHVPDIRKNLVSGSLLVQLGFK 153
           V  G S+ +G+ +   V G   VDLK TSGKT+ L NVQHVP I+KNLVSGSLL + GF+
Sbjct: 376 VGRGSSLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFR 435

Query: 152 VVLESNKVVITKGSLFIGKGFVYDGLFKLNV 60
           +V ESNK V++K   F+GKG+   GLF+ ++
Sbjct: 436 LVFESNKCVVSKYGTFVGKGYDSGGLFRFSL 466



 Score = 55.5 bits (132), Expect(2) = 9e-28
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 4/139 (2%)
 Frame = -2

Query: 820 LDENYQVACLLDKLPPSWSNFAKNLRGTHGALTLRHVIQSIRIEDQHRLREINHAR---- 653
           + + +    ++ KLPPSWS+FA +L+      ++  +I S+ +E++ R  ++   +    
Sbjct: 212 MPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLIGSLGVEEKARANDVRGKKVEGG 271

Query: 652 SSNQMKAKVNLTESQPKNRSKTKYQPKSKGQXXXXXXXXXKAKSNTSNSQPGNNDESFCF 473
           SS  M  K N   S    + K   +PK              A +N      G   +  CF
Sbjct: 272 SSANMVQKKNPHASHNNKKVKPDVKPK--------------AATNFKKKGKG-KAKGDCF 316

Query: 472 VCGRDNHVARDCFYRKKEK 416
           VCG+  H A+DC  RK  K
Sbjct: 317 VCGKSGHWAKDCPERKDRK 335


>gb|AAP54258.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 879

 Score = 94.0 bits (232), Expect(2) = 9e-28
 Identities = 49/91 (53%), Positives = 63/91 (69%)
 Frame = -1

Query: 332 VSGGRSVTVGDSTAVKVLGQDRVDLKMTSGKTLTLHNVQHVPDIRKNLVSGSLLVQLGFK 153
           VS G +V +G+ +   V G   VDLK TSGK + L NVQHVP I +NLVSGS L + GFK
Sbjct: 249 VSRGSTVLMGNGSHASVHGVGMVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFK 308

Query: 152 VVLESNKVVITKGSLFIGKGFVYDGLFKLNV 60
           +V ESNKVV++K   FIGKG+   GLF+ ++
Sbjct: 309 LVFESNKVVVSKHGYFIGKGYECGGLFRFSL 339



 Score = 57.0 bits (136), Expect(2) = 9e-28
 Identities = 37/128 (28%), Positives = 60/128 (46%)
 Frame = -2

Query: 820 LDENYQVACLLDKLPPSWSNFAKNLRGTHGALTLRHVIQSIRIEDQHRLREINHARSSNQ 641
           L + +   C++ KLPPSW  F   L+      ++  +I S+ +E++ R +++       Q
Sbjct: 110 LPDKFVDGCIIAKLPPSWRGFGTALKHKRQEYSVEGLIASLDVEEKAREKDVAFKGDGGQ 169

Query: 640 MKAKVNLTESQPKNRSKTKYQPKSKGQXXXXXXXXXKAKSNTSNSQPGNNDESFCFVCGR 461
             A V  T    +N+SK KY+ +               K   +N+ P N DE  CFVC +
Sbjct: 170 STANVVHT---AQNKSKGKYKAQQTTNF----------KKKNNNNNP-NQDERTCFVC-Q 214

Query: 460 DNHVARDC 437
             H+AR C
Sbjct: 215 PGHLARKC 222


>gb|AAL31047.1|AC078893_10 putative polyprotein [Oryza sativa Japonica Group]
          Length = 866

 Score = 94.0 bits (232), Expect(2) = 9e-28
 Identities = 49/91 (53%), Positives = 63/91 (69%)
 Frame = -1

Query: 332 VSGGRSVTVGDSTAVKVLGQDRVDLKMTSGKTLTLHNVQHVPDIRKNLVSGSLLVQLGFK 153
           VS G +V +G+ +   V G   VDLK TSGK + L NVQHVP I +NLVSGS L + GFK
Sbjct: 251 VSRGSTVLMGNGSHASVHGVGMVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFK 310

Query: 152 VVLESNKVVITKGSLFIGKGFVYDGLFKLNV 60
           +V ESNKVV++K   FIGKG+   GLF+ ++
Sbjct: 311 LVFESNKVVVSKHGYFIGKGYECGGLFRFSL 341



 Score = 57.0 bits (136), Expect(2) = 9e-28
 Identities = 37/128 (28%), Positives = 60/128 (46%)
 Frame = -2

Query: 820 LDENYQVACLLDKLPPSWSNFAKNLRGTHGALTLRHVIQSIRIEDQHRLREINHARSSNQ 641
           L + +   C++ KLPPSW  F   L+      ++  +I S+ +E++ R +++       Q
Sbjct: 110 LPDKFVDGCIIAKLPPSWRGFGTALKHKRQEYSVEGLIASLDVEEKAREKDVAFKGDGGQ 169

Query: 640 MKAKVNLTESQPKNRSKTKYQPKSKGQXXXXXXXXXKAKSNTSNSQPGNNDESFCFVCGR 461
             A V  T    +N+SK KY+ +               K   +N+ P N DE  CFVC +
Sbjct: 170 STANVVHT---AQNKSKGKYKAQQTTNF----------KKKNNNNNP-NQDERTCFVC-Q 214

Query: 460 DNHVARDC 437
             H+AR C
Sbjct: 215 PGHLARKC 222


>gb|ABF94929.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1284

 Score = 86.3 bits (212), Expect(2) = 2e-27
 Identities = 45/88 (51%), Positives = 60/88 (68%)
 Frame = -1

Query: 323 GRSVTVGDSTAVKVLGQDRVDLKMTSGKTLTLHNVQHVPDIRKNLVSGSLLVQLGFKVVL 144
           G +V +G+ +   V G   V LK TSGK + L NVQHVP I +NLVSGS L++  FK+V 
Sbjct: 262 GSTVLMGNGSHASVHGVGTVYLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLIRDRFKLVF 321

Query: 143 ESNKVVITKGSLFIGKGFVYDGLFKLNV 60
           ESNKVV++K   FIGKG+   GLF+ ++
Sbjct: 322 ESNKVVVSKHGYFIGKGYECGGLFRFSL 349



 Score = 63.9 bits (154), Expect(2) = 2e-27
 Identities = 40/135 (29%), Positives = 64/135 (47%)
 Frame = -2

Query: 820 LDENYQVACLLDKLPPSWSNFAKNLRGTHGALTLRHVIQSIRIEDQHRLREINHARSSNQ 641
           L + + V C++ KLPPSW +F   L+      ++  +I  + +E++ R ++        Q
Sbjct: 126 LPDKFVVGCIIAKLPPSWRSFGTVLKHKRQEYSVEGLIAPLDVEEKAREKDAASKGDGGQ 185

Query: 640 MKAKVNLTESQPKNRSKTKYQPKSKGQXXXXXXXXXKAKSNTSNSQPGNNDESFCFVCGR 461
             A V     + +N+SK KY+ +               K   +N+ P N DE  CFVCG+
Sbjct: 186 SSANVM---HKAQNKSKGKYKAQQTTNLK---------KQKKNNNNP-NQDERTCFVCGQ 232

Query: 460 DNHVARDCFYRKKEK 416
             H+AR C  RK  K
Sbjct: 233 LGHLARKCPQRKGMK 247