BLASTX nr result
ID: Stemona21_contig00032764
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Stemona21_contig00032764
(1205 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CCH50966.1| T4.5 [Malus x robusta] 311 3e-82
dbj|BAK41512.1| C-end truncated polyprotein [Arabidopsis thaliana] 310 8e-82
gb|AAK51235.1|AF287471_1 polyprotein [Arabidopsis thaliana] 309 2e-81
gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 proteas... 308 4e-81
dbj|BAA78423.1| polyprotein [Arabidopsis thaliana] 306 1e-80
gb|AAK62788.1|AC027036_9 polyprotein, putative [Arabidopsis thal... 306 1e-80
dbj|BAA87949.1| retrotransposon homolog, partial [Arabidopsis th... 306 1e-80
dbj|BAK41511.1| polyprotein [Arabidopsis thaliana] 306 1e-80
emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera] 306 1e-80
gb|AAK62793.1|AC027036_14 polyprotein, putative [Arabidopsis tha... 306 1e-80
emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana] 306 1e-80
gb|AAK43485.1|AC084807_10 polyprotein, putative [Arabidopsis tha... 303 7e-80
dbj|BAA78426.1| polyprotein [Arabidopsis thaliana] 301 3e-79
dbj|BAA78424.1| polyprotein [Arabidopsis thaliana] gi|404433798|... 301 3e-79
dbj|BAM42649.1| Polyprotein [Arabidopsis thaliana] 301 3e-79
dbj|BAM42647.1| polyprotein [Arabidopsis thaliana] gi|403406144|... 301 3e-79
dbj|BAM42646.1| polyprotein [Arabidopsis thaliana] 301 3e-79
emb|CAN79884.1| hypothetical protein VITISV_002539 [Vitis vinifera] 301 3e-79
gb|AAC79110.1| putative polyprotein of LTR transposon [Arabidops... 301 3e-79
dbj|BAM42650.1| Polyprotein [Arabidopsis thaliana] 301 4e-79
>emb|CCH50966.1| T4.5 [Malus x robusta]
Length = 1670
Score = 311 bits (798), Expect = 3e-82
Identities = 160/358 (44%), Positives = 224/358 (62%), Gaps = 17/358 (4%)
Frame = +3
Query: 81 QFTKDNNCCFIFYPWGFEIKNLQSGQTVLKGSRHGGLYPI------GI-GDSLPAAGFFS 239
+F DN C F P+GF +K+L +G+ + +G GGLYP G+ G ++
Sbjct: 665 KFVYDNWCYLTFDPFGFYVKDLSTGKMLFQGPSEGGLYPFYWNASNGVSGIAISPTALMI 724
Query: 240 NKTDGDTWHARLGHPSFALMKSLHSSIQANKI----------FCRSCKLGKSSKVPFSRR 389
K D TWH RLGHPS +LHS + N + C +C+LGKS ++ FS
Sbjct: 725 AKADIHTWHRRLGHPSGG---TLHSVVHKNHLPVIGYVNNMSVCTACQLGKSYRLSFSTL 781
Query: 390 TFYLNELLHTLHSDVWGPAPMTSMNGFRFYLIIVDECSRFSWYFPLRRKSEVGLVLIQSI 569
+ L LH+DVWGP+P +S G+RFYLIIVD+ +++SW +PL KS+V L I
Sbjct: 782 PCTSSRPLQLLHTDVWGPSPTSSCTGYRFYLIIVDDFTKYSWLYPLHFKSDVFSTLKTFI 841
Query: 570 TLMENQLNKKVKIIQTDGGGEYTSHLLRDYFIKQGISHLLSCPGTPEQNGLAERKHRHVV 749
++ L+ +V+ I++D GGE+ + L+ +F +QGI+H LSC T EQNG AERKHRHVV
Sbjct: 842 LKLQTLLDLQVQSIRSDSGGEFLNKSLQSFFNEQGITHQLSCLHTSEQNGCAERKHRHVV 901
Query: 750 ETGLTMMAHAHLPSHFWNIAFATAVYLINRLPSKPMQGRTPFEALFGSCPSYNHLRTLGC 929
E G T+++ + LP+ FW AF T VYLINRLP + +P+E LF + P Y+ L+ GC
Sbjct: 902 EMGRTLLSQSDLPTQFWVEAFQTVVYLINRLPPQ-SSVISPWELLFHASPKYHTLKAFGC 960
Query: 930 ACFPLLEPFGRGKLDYKSLECVFIGYSGQHKGYKCLDISTGKIYISRHVSFDERTFPF 1103
AC+P L+P+ R KLD+KS +CVF+GYS H GY+C D + ++YISRHV FDE FP+
Sbjct: 961 ACYPWLQPYSRDKLDFKSKQCVFLGYSLNHSGYRCWDPISNRLYISRHVVFDESLFPY 1018
>dbj|BAK41512.1| C-end truncated polyprotein [Arabidopsis thaliana]
Length = 1048
Score = 310 bits (794), Expect = 8e-82
Identities = 153/340 (45%), Positives = 220/340 (64%), Gaps = 9/340 (2%)
Frame = +3
Query: 114 FYPWGFEIKNLQSGQTVLKGSRHGGLYPIGIGDSLPAAGFFS--NKTDGDTWHARLGHPS 287
F+P F++K+L +G +L+G LY I S P + F S +K +WHARLGHP+
Sbjct: 411 FFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASPSSKATHSSWHARLGHPA 470
Query: 288 FALMKSLHSSIQANKI-------FCRSCKLGKSSKVPFSRRTFYLNELLHTLHSDVWGPA 446
+++ S+ S+ + + C C + KS+KVPFS+ T L ++SDVW +
Sbjct: 471 PSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSDVWS-S 529
Query: 447 PMTSMNGFRFYLIIVDECSRFSWYFPLRRKSEVGLVLIQSITLMENQLNKKVKIIQTDGG 626
P+ S + +R+Y+I VD +R++W +PL++KS+V I L+EN+ ++ +D G
Sbjct: 530 PILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNG 589
Query: 627 GEYTSHLLRDYFIKQGISHLLSCPGTPEQNGLAERKHRHVVETGLTMMAHAHLPSHFWNI 806
GE+ + LR+YF + GISHL S P TPE NGL+ERKHRH+VETGLT+++HA +P +W
Sbjct: 590 GEFVA--LREYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPY 647
Query: 807 AFATAVYLINRLPSKPMQGRTPFEALFGSCPSYNHLRTLGCACFPLLEPFGRGKLDYKSL 986
AFA AVYLINRLP+ +Q +PF+ LFG+ P+Y+ LR GCAC+P L P+ + KLD KS
Sbjct: 648 AFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSR 707
Query: 987 ECVFIGYSGQHKGYKCLDISTGKIYISRHVSFDERTFPFA 1106
+CVF+GYS Y CL + T +IYISRHV FDE FPF+
Sbjct: 708 QCVFLGYSLTQSAYLCLHLQTSRIYISRHVRFDENCFPFS 747
>gb|AAK51235.1|AF287471_1 polyprotein [Arabidopsis thaliana]
Length = 1453
Score = 309 bits (791), Expect = 2e-81
Identities = 152/332 (45%), Positives = 213/332 (64%), Gaps = 9/332 (2%)
Frame = +3
Query: 135 IKNLQSGQTVLKGSRHGGLYPIGIGDSLPAAGFFSNK---TDGDTWHARLGHPSFALMKS 305
I ++ + + V KG R GLY + ++ F+SN+ + WH RLGH + +++
Sbjct: 417 IIDINTQKVVSKGPRSNGLYVL---ENQEFVAFYSNRQCAASEEIWHHRLGHSNSRILQQ 473
Query: 306 LHSS--IQANKI----FCRSCKLGKSSKVPFSRRTFYLNELLHTLHSDVWGPAPMTSMNG 467
L SS I NK C C++GKSSK+ F +LL +H D+WGP+P+ S G
Sbjct: 474 LKSSKEISFNKSRMSPVCEPCQMGKSSKLQFFSSNSRELDLLGRIHCDLWGPSPVVSKQG 533
Query: 468 FRFYLIIVDECSRFSWYFPLRRKSEVGLVLIQSITLMENQLNKKVKIIQTDGGGEYTSHL 647
F++Y++ VD+ SR+SW++PL+ KS+ V + L+ENQ N K+K+ Q+DGGGE+TS+L
Sbjct: 534 FKYYVVFVDDYSRYSWFYPLKAKSDFFAVFVAFQNLVENQFNTKIKVFQSDGGGEFTSNL 593
Query: 648 LRDYFIKQGISHLLSCPGTPEQNGLAERKHRHVVETGLTMMAHAHLPSHFWNIAFATAVY 827
++ + GI H +SCP TP+QNG+AERKHRH VE GL+MM H+H P FW AF TA +
Sbjct: 594 MKKHLTDCGIQHRISCPYTPQQNGIAERKHRHFVELGLSMMFHSHTPLQFWVEAFFTASF 653
Query: 828 LINRLPSKPMQGRTPFEALFGSCPSYNHLRTLGCACFPLLEPFGRGKLDYKSLECVFIGY 1007
L N LPS + +P EAL P+Y LR G AC+P L P G K + +SL+CVF+GY
Sbjct: 654 LSNMLPSPSLGNVSPLEALLKQKPNYAMLRVFGTACYPCLRPLGEHKFEPRSLQCVFLGY 713
Query: 1008 SGQHKGYKCLDISTGKIYISRHVSFDERTFPF 1103
+ Q+KGY+CL TG++YISRHV FDE TFPF
Sbjct: 714 NSQYKGYRCLYPPTGRVYISRHVIFDEETFPF 745
>gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 protease homolog from
Arabidopsis thaliana BAC gb|AF080119 and is a member of
the reverse transcriptase family PF|00078 [Arabidopsis
thaliana]
Length = 1415
Score = 308 bits (788), Expect = 4e-81
Identities = 153/332 (46%), Positives = 213/332 (64%), Gaps = 9/332 (2%)
Frame = +3
Query: 135 IKNLQSGQTVLKGSRHGGLYPIGIGDSLPAAGFFSNKTDGDT---WHARLGHPSFALMKS 305
I +LQ+ + V G R GLY + ++ +SN+ T WH RLGH + ++
Sbjct: 414 IIDLQTQKVVTTGPRRNGLYVL---ENQEFVALYSNRQCAATEEVWHHRLGHANSKALQH 470
Query: 306 LHSS--IQANKI----FCRSCKLGKSSKVPFSRRTFYLNELLHTLHSDVWGPAPMTSMNG 467
L +S IQ NK C C++GKSS++PF + L +H D+WGP+P+ S G
Sbjct: 471 LQNSKAIQINKSRTSPVCEPCQMGKSSRLPFLISDSRVLHPLDRIHCDLWGPSPVVSNQG 530
Query: 468 FRFYLIIVDECSRFSWYFPLRRKSEVGLVLIQSITLMENQLNKKVKIIQTDGGGEYTSHL 647
++Y I VD+ SR+SW++PL KSE V I L+ENQLN K+K+ Q+DGGGE+ S+
Sbjct: 531 LKYYAIFVDDYSRYSWFYPLHNKSEFLSVFISFQKLVENQLNTKIKVFQSDGGGEFVSNK 590
Query: 648 LRDYFIKQGISHLLSCPGTPEQNGLAERKHRHVVETGLTMMAHAHLPSHFWNIAFATAVY 827
L+ + + GI H +SCP TP+QNGLAERKHRH+VE GL+M+ H+H P FW +F TA Y
Sbjct: 591 LKTHLSEHGIHHRISCPYTPQQNGLAERKHRHLVELGLSMLFHSHTPQKFWVESFFTANY 650
Query: 828 LINRLPSKPMQGRTPFEALFGSCPSYNHLRTLGCACFPLLEPFGRGKLDYKSLECVFIGY 1007
+INRLPS ++ +P+EALFG P Y+ LR G AC+P L P + K D +SL+CVF+GY
Sbjct: 651 IINRLPSSVLKNLSPYEALFGEKPDYSSLRVFGSACYPCLRPLAQNKFDPRSLQCVFLGY 710
Query: 1008 SGQHKGYKCLDISTGKIYISRHVSFDERTFPF 1103
+ Q+KGY+C TGK+YISR+V F+E PF
Sbjct: 711 NSQYKGYRCFYPPTGKVYISRNVIFNESELPF 742
>dbj|BAA78423.1| polyprotein [Arabidopsis thaliana]
Length = 1431
Score = 306 bits (784), Expect = 1e-80
Identities = 151/340 (44%), Positives = 219/340 (64%), Gaps = 9/340 (2%)
Frame = +3
Query: 114 FYPWGFEIKNLQSGQTVLKGSRHGGLYPIGIGDSLPAAGFFS--NKTDGDTWHARLGHPS 287
F+P F++K+L +G +L+G LY I S P + F S +K +WHARLGHP+
Sbjct: 381 FFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASPSSKATHSSWHARLGHPA 440
Query: 288 FALMKSLHSSIQANKI-------FCRSCKLGKSSKVPFSRRTFYLNELLHTLHSDVWGPA 446
+++ S+ S+ + + C C + KS+KVPFS+ T L ++SDVW +
Sbjct: 441 PSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSDVWS-S 499
Query: 447 PMTSMNGFRFYLIIVDECSRFSWYFPLRRKSEVGLVLIQSITLMENQLNKKVKIIQTDGG 626
P+ S + +R+Y+I VD +R++W +PL++KS+V I L+EN+ ++ +D G
Sbjct: 500 PILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNG 559
Query: 627 GEYTSHLLRDYFIKQGISHLLSCPGTPEQNGLAERKHRHVVETGLTMMAHAHLPSHFWNI 806
GE+ + L +YF + GISHL S P TPE NGL+ERKHRH+VETGLT+++HA +P +W
Sbjct: 560 GEFVA--LWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPY 617
Query: 807 AFATAVYLINRLPSKPMQGRTPFEALFGSCPSYNHLRTLGCACFPLLEPFGRGKLDYKSL 986
AFA AVYLINRLP+ +Q +PF+ LFG+ P+Y+ LR GCAC+P L P+ + KLD KS
Sbjct: 618 AFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSR 677
Query: 987 ECVFIGYSGQHKGYKCLDISTGKIYISRHVSFDERTFPFA 1106
+CVF+GYS Y CL + T ++YISRHV FDE FPF+
Sbjct: 678 QCVFLGYSLTQSAYLCLHLQTSRLYISRHVRFDENCFPFS 717
>gb|AAK62788.1|AC027036_9 polyprotein, putative [Arabidopsis thaliana]
gi|18265373|dbj|BAB84015.1| polyprotein [Arabidopsis
thaliana]
Length = 1466
Score = 306 bits (784), Expect = 1e-80
Identities = 151/340 (44%), Positives = 219/340 (64%), Gaps = 9/340 (2%)
Frame = +3
Query: 114 FYPWGFEIKNLQSGQTVLKGSRHGGLYPIGIGDSLPAAGFFS--NKTDGDTWHARLGHPS 287
F+P F++K+L +G +L+G LY I S P + F S +K +WHARLGHP+
Sbjct: 416 FFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASPSSKATHSSWHARLGHPA 475
Query: 288 FALMKSLHSSIQANKI-------FCRSCKLGKSSKVPFSRRTFYLNELLHTLHSDVWGPA 446
+++ S+ S+ + + C C + KS+KVPFS+ T L ++SDVW +
Sbjct: 476 PSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSDVWS-S 534
Query: 447 PMTSMNGFRFYLIIVDECSRFSWYFPLRRKSEVGLVLIQSITLMENQLNKKVKIIQTDGG 626
P+ S + +R+Y+I VD +R++W +PL++KS+V I L+EN+ ++ +D G
Sbjct: 535 PILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNG 594
Query: 627 GEYTSHLLRDYFIKQGISHLLSCPGTPEQNGLAERKHRHVVETGLTMMAHAHLPSHFWNI 806
GE+ + L +YF + GISHL S P TPE NGL+ERKHRH+VETGLT+++HA +P +W
Sbjct: 595 GEFVA--LWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPY 652
Query: 807 AFATAVYLINRLPSKPMQGRTPFEALFGSCPSYNHLRTLGCACFPLLEPFGRGKLDYKSL 986
AFA AVYLINRLP+ +Q +PF+ LFG+ P+Y+ LR GCAC+P L P+ + KLD KS
Sbjct: 653 AFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSR 712
Query: 987 ECVFIGYSGQHKGYKCLDISTGKIYISRHVSFDERTFPFA 1106
+CVF+GYS Y CL + T ++YISRHV FDE FPF+
Sbjct: 713 QCVFLGYSLTQSAYLCLHLQTSRLYISRHVRFDENCFPFS 752
>dbj|BAA87949.1| retrotransposon homolog, partial [Arabidopsis thaliana]
Length = 847
Score = 306 bits (784), Expect = 1e-80
Identities = 151/340 (44%), Positives = 219/340 (64%), Gaps = 9/340 (2%)
Frame = +3
Query: 114 FYPWGFEIKNLQSGQTVLKGSRHGGLYPIGIGDSLPAAGFFS--NKTDGDTWHARLGHPS 287
F+P F++K+L +G +L+G LY I S P + F S +K +WHARLGHP+
Sbjct: 381 FFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASPSSKATHSSWHARLGHPA 440
Query: 288 FALMKSLHSSIQANKI-------FCRSCKLGKSSKVPFSRRTFYLNELLHTLHSDVWGPA 446
+++ S+ S+ + + C C + KS+KVPFS+ T L ++SDVW +
Sbjct: 441 PSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSDVWS-S 499
Query: 447 PMTSMNGFRFYLIIVDECSRFSWYFPLRRKSEVGLVLIQSITLMENQLNKKVKIIQTDGG 626
P+ S + +R+Y+I VD +R++W +PL++KS+V I L+EN+ ++ +D G
Sbjct: 500 PILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNG 559
Query: 627 GEYTSHLLRDYFIKQGISHLLSCPGTPEQNGLAERKHRHVVETGLTMMAHAHLPSHFWNI 806
GE+ + L +YF + GISHL S P TPE NGL+ERKHRH+VETGLT+++HA +P +W
Sbjct: 560 GEFVA--LWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPY 617
Query: 807 AFATAVYLINRLPSKPMQGRTPFEALFGSCPSYNHLRTLGCACFPLLEPFGRGKLDYKSL 986
AFA AVYLINRLP+ +Q +PF+ LFG+ P+Y+ LR GCAC+P L P+ + KLD KS
Sbjct: 618 AFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSR 677
Query: 987 ECVFIGYSGQHKGYKCLDISTGKIYISRHVSFDERTFPFA 1106
+CVF+GYS Y CL + T ++YISRHV FDE FPF+
Sbjct: 678 QCVFLGYSLTQSAYLCLHLQTSRLYISRHVRFDENCFPFS 717
>dbj|BAK41511.1| polyprotein [Arabidopsis thaliana]
Length = 1466
Score = 306 bits (784), Expect = 1e-80
Identities = 151/340 (44%), Positives = 219/340 (64%), Gaps = 9/340 (2%)
Frame = +3
Query: 114 FYPWGFEIKNLQSGQTVLKGSRHGGLYPIGIGDSLPAAGFFS--NKTDGDTWHARLGHPS 287
F+P F++K+L +G +L+G LY I S P + F S +K +WHARLGHP+
Sbjct: 416 FFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASPSSKATHSSWHARLGHPA 475
Query: 288 FALMKSLHSSIQANKI-------FCRSCKLGKSSKVPFSRRTFYLNELLHTLHSDVWGPA 446
+++ S+ S+ + + C C + KS+KVPFS+ T L ++SDVW +
Sbjct: 476 PSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSDVWS-S 534
Query: 447 PMTSMNGFRFYLIIVDECSRFSWYFPLRRKSEVGLVLIQSITLMENQLNKKVKIIQTDGG 626
P+ S + +R+Y+I VD +R++W +PL++KS+V I L+EN+ ++ +D G
Sbjct: 535 PILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNG 594
Query: 627 GEYTSHLLRDYFIKQGISHLLSCPGTPEQNGLAERKHRHVVETGLTMMAHAHLPSHFWNI 806
GE+ + L +YF + GISHL S P TPE NGL+ERKHRH+VETGLT+++HA +P +W
Sbjct: 595 GEFVA--LWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPY 652
Query: 807 AFATAVYLINRLPSKPMQGRTPFEALFGSCPSYNHLRTLGCACFPLLEPFGRGKLDYKSL 986
AFA AVYLINRLP+ +Q +PF+ LFG+ P+Y+ LR GCAC+P L P+ + KLD KS
Sbjct: 653 AFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSR 712
Query: 987 ECVFIGYSGQHKGYKCLDISTGKIYISRHVSFDERTFPFA 1106
+CVF+GYS Y CL + T ++YISRHV FDE FPF+
Sbjct: 713 QCVFLGYSLTQSAYLCLHLQTSRLYISRHVRFDENCFPFS 752
>emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]
Length = 1171
Score = 306 bits (784), Expect = 1e-80
Identities = 155/378 (41%), Positives = 226/378 (59%), Gaps = 15/378 (3%)
Frame = +3
Query: 12 QTSIHLDRXXXXXXXXXXXXXXSQFTKDNNCCFIFYPWGFEIKNLQSGQTVLKGSRHGGL 191
Q++ HL++ +QF DNNC FI GF +K +G+ +L+G GL
Sbjct: 372 QSNFHLNKILHCPQAATNLISINQFCLDNNCYFILTANGFVVKENLTGRILLQGVVENGL 431
Query: 192 YPIG----IGDSLPAAGF-FSNKTDGDTWHARLGHPSFALMKSLHSSIQANKI------- 335
YP+ SL + + DTWH+RLGHPS + SL S NK+
Sbjct: 432 YPLAGCKTFHKSLTCLSTTIGVRANADTWHSRLGHPSSVIFNSLFHS---NKLSVKGSST 488
Query: 336 ---FCRSCKLGKSSKVPFSRRTFYLNELLHTLHSDVWGPAPMTSMNGFRFYLIIVDECSR 506
FC +C+LGK+ ++PF + + L +HSDVW +P+ S G +Y++ +D+ SR
Sbjct: 489 KLEFCSACQLGKAKQLPFPESSRQSSVPLALIHSDVW-VSPVQSTGGCSYYVLFIDDYSR 547
Query: 507 FSWYFPLRRKSEVGLVLIQSITLMENQLNKKVKIIQTDGGGEYTSHLLRDYFIKQGISHL 686
+SW +PL RKS+V ++ T+ E + +K IQTD GGE+TS+ + + QGI H
Sbjct: 548 YSWLYPLHRKSDVFATFVKFKTIAEKLFSTSIKQIQTDNGGEFTSNQFKQFLTAQGIFHR 607
Query: 687 LSCPGTPEQNGLAERKHRHVVETGLTMMAHAHLPSHFWNIAFATAVYLINRLPSKPMQGR 866
L+CP T +QNG+ ERKHRH+ E GLT++A + L +W AF T+V+LINRLP+K +
Sbjct: 608 LTCPHTSQQNGIVERKHRHIQEMGLTLLAQSSLSPQYWVDAFLTSVFLINRLPTKVLDNL 667
Query: 867 TPFEALFGSCPSYNHLRTLGCACFPLLEPFGRGKLDYKSLECVFIGYSGQHKGYKCLDIS 1046
TP+ L + P+Y LR GCAC+PLL P+ KL ++S +C+F+GYS KGY+CLD++
Sbjct: 668 TPYFLLHKTEPTYMDLRVFGCACYPLLRPYNDHKLTFRSKKCIFLGYSNCQKGYRCLDLA 727
Query: 1047 TGKIYISRHVSFDERTFP 1100
T ++YISRHV FDE +FP
Sbjct: 728 TKRVYISRHVIFDEHSFP 745
>gb|AAK62793.1|AC027036_14 polyprotein, putative [Arabidopsis thaliana]
gi|338746561|dbj|BAK41510.1| polyprotein [Arabidopsis
thaliana]
Length = 1466
Score = 306 bits (784), Expect = 1e-80
Identities = 151/340 (44%), Positives = 219/340 (64%), Gaps = 9/340 (2%)
Frame = +3
Query: 114 FYPWGFEIKNLQSGQTVLKGSRHGGLYPIGIGDSLPAAGFFS--NKTDGDTWHARLGHPS 287
F+P F++K+L +G +L+G LY I S P + F S +K +WHARLGHP+
Sbjct: 416 FFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASPSSKATHSSWHARLGHPA 475
Query: 288 FALMKSLHSSIQANKI-------FCRSCKLGKSSKVPFSRRTFYLNELLHTLHSDVWGPA 446
+++ S+ S+ + + C C + KS+KVPFS+ T L ++SDVW +
Sbjct: 476 PSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSDVWS-S 534
Query: 447 PMTSMNGFRFYLIIVDECSRFSWYFPLRRKSEVGLVLIQSITLMENQLNKKVKIIQTDGG 626
P+ S + +R+Y+I VD +R++W +PL++KS+V I L+EN+ ++ +D G
Sbjct: 535 PILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNG 594
Query: 627 GEYTSHLLRDYFIKQGISHLLSCPGTPEQNGLAERKHRHVVETGLTMMAHAHLPSHFWNI 806
GE+ + L +YF + GISHL S P TPE NGL+ERKHRH+VETGLT+++HA +P +W
Sbjct: 595 GEFVA--LWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPY 652
Query: 807 AFATAVYLINRLPSKPMQGRTPFEALFGSCPSYNHLRTLGCACFPLLEPFGRGKLDYKSL 986
AFA AVYLINRLP+ +Q +PF+ LFG+ P+Y+ LR GCAC+P L P+ + KLD KS
Sbjct: 653 AFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSR 712
Query: 987 ECVFIGYSGQHKGYKCLDISTGKIYISRHVSFDERTFPFA 1106
+CVF+GYS Y CL + T ++YISRHV FDE FPF+
Sbjct: 713 QCVFLGYSLTQSAYLCLHLQTSRLYISRHVRFDENCFPFS 752
>emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]
Length = 1466
Score = 306 bits (783), Expect = 1e-80
Identities = 154/332 (46%), Positives = 212/332 (63%), Gaps = 9/332 (2%)
Frame = +3
Query: 135 IKNLQSGQTVLKGSRHGGLYPIGIGDSLPAAGFFSNK---TDGDTWHARLGHPSFALMKS 305
I +L + + V KG R+ GLY + ++ +SN+ +TWH RLGH + +++
Sbjct: 416 IIDLTTQKVVSKGPRNNGLYML---ENSEFVALYSNRQCAASMETWHHRLGHSNSKILQQ 472
Query: 306 L--HSSIQANKI----FCRSCKLGKSSKVPFSRRTFYLNELLHTLHSDVWGPAPMTSMNG 467
L IQ NK C C++GKS+++ F F + L +H D+WGP+P+ S G
Sbjct: 473 LLTRKEIQVNKSRTSPVCEPCQMGKSTRLQFFSSDFRALKPLDRVHCDLWGPSPVVSNQG 532
Query: 468 FRFYLIIVDECSRFSWYFPLRRKSEVGLVLIQSITLMENQLNKKVKIIQTDGGGEYTSHL 647
F++Y + VD+ SRFSW+FPLR KS+ V I L+ENQL K+K Q+DGGGE+TS+
Sbjct: 533 FKYYAVFVDDFSRFSWFFPLRMKSKFISVFIAYQKLVENQLGTKIKEFQSDGGGEFTSNK 592
Query: 648 LRDYFIKQGISHLLSCPGTPEQNGLAERKHRHVVETGLTMMAHAHLPSHFWNIAFATAVY 827
L+++F + GI H +SCP TP+QNG+AERKHRH+VE GL+M+ H+H P FW AF TA Y
Sbjct: 593 LKEHFREHGIHHRISCPYTPQQNGVAERKHRHLVELGLSMLYHSHTPLKFWVEAFFTANY 652
Query: 828 LINRLPSKPMQGRTPFEALFGSCPSYNHLRTLGCACFPLLEPFGRGKLDYKSLECVFIGY 1007
L N LPS ++ +P+E LF Y LR G AC+P L P + K D +SL+CVF+GY
Sbjct: 653 LSNLLPSSVLKEISPYETLFQQKVDYTPLRVFGTACYPCLRPLAKNKFDPRSLQCVFLGY 712
Query: 1008 SGQHKGYKCLDISTGKIYISRHVSFDERTFPF 1103
Q+KGY+CL TGK+YISRHV FDE FPF
Sbjct: 713 HNQYKGYRCLYPPTGKVYISRHVIFDEAQFPF 744
>gb|AAK43485.1|AC084807_10 polyprotein, putative [Arabidopsis thaliana]
gi|225898008|dbj|BAH30336.1| hypothetical protein
[Arabidopsis thaliana]
Length = 1459
Score = 303 bits (777), Expect = 7e-80
Identities = 146/341 (42%), Positives = 218/341 (63%), Gaps = 10/341 (2%)
Frame = +3
Query: 114 FYPWGFEIKNLQSGQTVLKGSRHGGLYPIGIGDSLPAAGFFSN---KTDGDTWHARLGHP 284
F+P F++K+L +G +L+G LY + + PA F++ KT +WH+RLGHP
Sbjct: 422 FFPASFQVKDLNTGTLLLQGRTKDDLYEWPVTNP-PATALFTSPSPKTTLSSWHSRLGHP 480
Query: 285 SFALMKSLHSSIQ-------ANKIFCRSCKLGKSSKVPFSRRTFYLNELLHTLHSDVWGP 443
S +++ +L S +NK C C + KS K+PF+ + + + L + +DVW
Sbjct: 481 SASILNTLLSKFSLPVSVASSNKTSCSDCLINKSHKLPFATSSIHSSSPLEYIFTDVW-T 539
Query: 444 APMTSMNGFRFYLIIVDECSRFSWYFPLRRKSEVGLVLIQSITLMENQLNKKVKIIQTDG 623
+P+ S + +++YL++VD +R++W +PL++KS+V I L+EN+ K++ + +D
Sbjct: 540 SPIISHDNYKYYLVLVDHYTRYTWLYPLQQKSQVKATFIAFKALVENRFQAKIRTLYSDN 599
Query: 624 GGEYTSHLLRDYFIKQGISHLLSCPGTPEQNGLAERKHRHVVETGLTMMAHAHLPSHFWN 803
GGE+ + LRD+ + GISHL S P TPE NGL+ERKHRH+VETGLT++ A +P +W
Sbjct: 600 GGEFIA--LRDFLVSNGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLTQASVPREYWT 657
Query: 804 IAFATAVYLINRLPSKPMQGRTPFEALFGSCPSYNHLRTLGCACFPLLEPFGRGKLDYKS 983
AFATAVYLINR+P+ + ++PF+ LFGS P+Y LR GC CFP L P+ R KL+ +S
Sbjct: 658 YAFATAVYLINRMPTPVLCLQSPFQKLFGSSPNYQRLRVFGCLCFPWLRPYTRNKLEERS 717
Query: 984 LECVFIGYSGQHKGYKCLDISTGKIYISRHVSFDERTFPFA 1106
CVF+GYS Y CLD+ ++Y SRHV FDE T+PFA
Sbjct: 718 KRCVFLGYSLTQTAYLCLDVDNNRLYTSRHVMFDESTYPFA 758
>dbj|BAA78426.1| polyprotein [Arabidopsis thaliana]
Length = 1475
Score = 301 bits (772), Expect = 3e-79
Identities = 151/340 (44%), Positives = 218/340 (64%), Gaps = 9/340 (2%)
Frame = +3
Query: 114 FYPWGFEIKNLQSGQTVLKGSRHGGLYPIGIGDSLPAAGFFS--NKTDGDTWHARLGHPS 287
F+P F++K+L +G +L+G LY I S + F S +K +WH+RLGHPS
Sbjct: 414 FFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQAVSMFASPCSKATHSSWHSRLGHPS 473
Query: 288 FALMKSL---HSSIQANK----IFCRSCKLGKSSKVPFSRRTFYLNELLHTLHSDVWGPA 446
A++ S+ HS N + C C + KS KVPFS T ++ L ++SDVW +
Sbjct: 474 LAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWS-S 532
Query: 447 PMTSMNGFRFYLIIVDECSRFSWYFPLRRKSEVGLVLIQSITLMENQLNKKVKIIQTDGG 626
P+ S++ +R+Y+I VD +R++W +PL++KS+V I +L+EN+ ++ + +D G
Sbjct: 533 PILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNG 592
Query: 627 GEYTSHLLRDYFIKQGISHLLSCPGTPEQNGLAERKHRHVVETGLTMMAHAHLPSHFWNI 806
GE+ +LRDY + GISH S P TPE NGL+ERKHRH+VE GLT+++HA +P +W
Sbjct: 593 GEFV--VLRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPY 650
Query: 807 AFATAVYLINRLPSKPMQGRTPFEALFGSCPSYNHLRTLGCACFPLLEPFGRGKLDYKSL 986
AF+ AVYLINRLP+ +Q ++PF+ LFG P+Y L+ GCAC+P L P+ R KL+ KS
Sbjct: 651 AFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLRPYNRHKLEDKSK 710
Query: 987 ECVFIGYSGQHKGYKCLDISTGKIYISRHVSFDERTFPFA 1106
+C F+GYS Y CL I TG++Y SRHV FDER FPF+
Sbjct: 711 QCAFMGYSLTQSAYLCLHIPTGRLYTSRHVQFDERCFPFS 750
>dbj|BAA78424.1| polyprotein [Arabidopsis thaliana] gi|404433798|dbj|BAM44533.1|
polyprotein [Arabidopsis thaliana]
Length = 1330
Score = 301 bits (772), Expect = 3e-79
Identities = 151/340 (44%), Positives = 218/340 (64%), Gaps = 9/340 (2%)
Frame = +3
Query: 114 FYPWGFEIKNLQSGQTVLKGSRHGGLYPIGIGDSLPAAGFFS--NKTDGDTWHARLGHPS 287
F+P F++K+L +G +L+G LY I S + F S +K +WH+RLGHPS
Sbjct: 269 FFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQAVSMFASPCSKATHSSWHSRLGHPS 328
Query: 288 FALMKSL---HSSIQANK----IFCRSCKLGKSSKVPFSRRTFYLNELLHTLHSDVWGPA 446
A++ S+ HS N + C C + KS KVPFS T ++ L ++SDVW +
Sbjct: 329 LAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWS-S 387
Query: 447 PMTSMNGFRFYLIIVDECSRFSWYFPLRRKSEVGLVLIQSITLMENQLNKKVKIIQTDGG 626
P+ S++ +R+Y+I VD +R++W +PL++KS+V I +L+EN+ ++ + +D G
Sbjct: 388 PILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNG 447
Query: 627 GEYTSHLLRDYFIKQGISHLLSCPGTPEQNGLAERKHRHVVETGLTMMAHAHLPSHFWNI 806
GE+ +LRDY + GISH S P TPE NGL+ERKHRH+VE GLT+++HA +P +W
Sbjct: 448 GEFV--VLRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPY 505
Query: 807 AFATAVYLINRLPSKPMQGRTPFEALFGSCPSYNHLRTLGCACFPLLEPFGRGKLDYKSL 986
AF+ AVYLINRLP+ +Q ++PF+ LFG P+Y L+ GCAC+P L P+ R KL+ KS
Sbjct: 506 AFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLRPYNRHKLEDKSK 565
Query: 987 ECVFIGYSGQHKGYKCLDISTGKIYISRHVSFDERTFPFA 1106
+C F+GYS Y CL I TG++Y SRHV FDER FPF+
Sbjct: 566 QCAFMGYSLTQSAYLCLHIPTGRLYTSRHVQFDERCFPFS 605
>dbj|BAM42649.1| Polyprotein [Arabidopsis thaliana]
Length = 1475
Score = 301 bits (772), Expect = 3e-79
Identities = 151/340 (44%), Positives = 218/340 (64%), Gaps = 9/340 (2%)
Frame = +3
Query: 114 FYPWGFEIKNLQSGQTVLKGSRHGGLYPIGIGDSLPAAGFFS--NKTDGDTWHARLGHPS 287
F+P F++K+L +G +L+G LY I S + F S +K +WH+RLGHPS
Sbjct: 414 FFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQAVSMFASPCSKATHSSWHSRLGHPS 473
Query: 288 FALMKSL---HSSIQANK----IFCRSCKLGKSSKVPFSRRTFYLNELLHTLHSDVWGPA 446
A++ S+ HS N + C C + KS KVPFS T ++ L ++SDVW +
Sbjct: 474 LAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWS-S 532
Query: 447 PMTSMNGFRFYLIIVDECSRFSWYFPLRRKSEVGLVLIQSITLMENQLNKKVKIIQTDGG 626
P+ S++ +R+Y+I VD +R++W +PL++KS+V I +L+EN+ ++ + +D G
Sbjct: 533 PILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNG 592
Query: 627 GEYTSHLLRDYFIKQGISHLLSCPGTPEQNGLAERKHRHVVETGLTMMAHAHLPSHFWNI 806
GE+ +LRDY + GISH S P TPE NGL+ERKHRH+VE GLT+++HA +P +W
Sbjct: 593 GEFV--VLRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPY 650
Query: 807 AFATAVYLINRLPSKPMQGRTPFEALFGSCPSYNHLRTLGCACFPLLEPFGRGKLDYKSL 986
AF+ AVYLINRLP+ +Q ++PF+ LFG P+Y L+ GCAC+P L P+ R KL+ KS
Sbjct: 651 AFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLRPYNRHKLEDKSK 710
Query: 987 ECVFIGYSGQHKGYKCLDISTGKIYISRHVSFDERTFPFA 1106
+C F+GYS Y CL I TG++Y SRHV FDER FPF+
Sbjct: 711 QCAFMGYSLTQSAYLCLHIPTGRLYTSRHVQFDERCFPFS 750
>dbj|BAM42647.1| polyprotein [Arabidopsis thaliana] gi|403406144|dbj|BAM42648.1|
polyprotein [Arabidopsis thaliana]
Length = 1475
Score = 301 bits (772), Expect = 3e-79
Identities = 151/340 (44%), Positives = 218/340 (64%), Gaps = 9/340 (2%)
Frame = +3
Query: 114 FYPWGFEIKNLQSGQTVLKGSRHGGLYPIGIGDSLPAAGFFS--NKTDGDTWHARLGHPS 287
F+P F++K+L +G +L+G LY I S + F S +K +WH+RLGHPS
Sbjct: 414 FFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQAVSMFASPCSKATHSSWHSRLGHPS 473
Query: 288 FALMKSL---HSSIQANK----IFCRSCKLGKSSKVPFSRRTFYLNELLHTLHSDVWGPA 446
A++ S+ HS N + C C + KS KVPFS T ++ L ++SDVW +
Sbjct: 474 LAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWS-S 532
Query: 447 PMTSMNGFRFYLIIVDECSRFSWYFPLRRKSEVGLVLIQSITLMENQLNKKVKIIQTDGG 626
P+ S++ +R+Y+I VD +R++W +PL++KS+V I +L+EN+ ++ + +D G
Sbjct: 533 PILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNG 592
Query: 627 GEYTSHLLRDYFIKQGISHLLSCPGTPEQNGLAERKHRHVVETGLTMMAHAHLPSHFWNI 806
GE+ +LRDY + GISH S P TPE NGL+ERKHRH+VE GLT+++HA +P +W
Sbjct: 593 GEFV--VLRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPY 650
Query: 807 AFATAVYLINRLPSKPMQGRTPFEALFGSCPSYNHLRTLGCACFPLLEPFGRGKLDYKSL 986
AF+ AVYLINRLP+ +Q ++PF+ LFG P+Y L+ GCAC+P L P+ R KL+ KS
Sbjct: 651 AFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLRPYNRHKLEDKSK 710
Query: 987 ECVFIGYSGQHKGYKCLDISTGKIYISRHVSFDERTFPFA 1106
+C F+GYS Y CL I TG++Y SRHV FDER FPF+
Sbjct: 711 QCAFMGYSLTQSAYLCLHIPTGRLYTSRHVQFDERCFPFS 750
>dbj|BAM42646.1| polyprotein [Arabidopsis thaliana]
Length = 1475
Score = 301 bits (772), Expect = 3e-79
Identities = 151/340 (44%), Positives = 218/340 (64%), Gaps = 9/340 (2%)
Frame = +3
Query: 114 FYPWGFEIKNLQSGQTVLKGSRHGGLYPIGIGDSLPAAGFFS--NKTDGDTWHARLGHPS 287
F+P F++K+L +G +L+G LY I S + F S +K +WH+RLGHPS
Sbjct: 414 FFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQAVSMFASPCSKATHSSWHSRLGHPS 473
Query: 288 FALMKSL---HSSIQANK----IFCRSCKLGKSSKVPFSRRTFYLNELLHTLHSDVWGPA 446
A++ S+ HS N + C C + KS KVPFS T ++ L ++SDVW +
Sbjct: 474 LAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWS-S 532
Query: 447 PMTSMNGFRFYLIIVDECSRFSWYFPLRRKSEVGLVLIQSITLMENQLNKKVKIIQTDGG 626
P+ S++ +R+Y+I VD +R++W +PL++KS+V I +L+EN+ ++ + +D G
Sbjct: 533 PILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNG 592
Query: 627 GEYTSHLLRDYFIKQGISHLLSCPGTPEQNGLAERKHRHVVETGLTMMAHAHLPSHFWNI 806
GE+ +LRDY + GISH S P TPE NGL+ERKHRH+VE GLT+++HA +P +W
Sbjct: 593 GEFV--VLRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPY 650
Query: 807 AFATAVYLINRLPSKPMQGRTPFEALFGSCPSYNHLRTLGCACFPLLEPFGRGKLDYKSL 986
AF+ AVYLINRLP+ +Q ++PF+ LFG P+Y L+ GCAC+P L P+ R KL+ KS
Sbjct: 651 AFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLRPYNRHKLEDKSK 710
Query: 987 ECVFIGYSGQHKGYKCLDISTGKIYISRHVSFDERTFPFA 1106
+C F+GYS Y CL I TG++Y SRHV FDER FPF+
Sbjct: 711 QCAFMGYSLTQSAYLCLHIPTGRLYTSRHVQFDERCFPFS 750
>emb|CAN79884.1| hypothetical protein VITISV_002539 [Vitis vinifera]
Length = 1453
Score = 301 bits (772), Expect = 3e-79
Identities = 148/353 (41%), Positives = 212/353 (60%), Gaps = 10/353 (2%)
Frame = +3
Query: 78 SQFTKDNNCCFIFYPWGFEIKNLQSGQTVLKGSRHGGLYPIGIGDSLPAAGFFSNKT--- 248
S+ T D F F ++N +G V KG R GGLY + G S A NK
Sbjct: 349 SKLTSDFPLSVTFSHDNFVVQNRITGMAVAKGKRAGGLYVLERGHSA-FASVLRNKNLHA 407
Query: 249 DGDTWHARLGHPSFALMKSLH-------SSIQANKIFCRSCKLGKSSKVPFSRRTFYLNE 407
+ WHARLGH + +++ L+ +S+ C +C+L KS ++PFS T N
Sbjct: 408 SFELWHARLGHVNHSILSLLNKKGQLFLTSLLPTPSLCSTCQLAKSHRLPFSSNTTRSNV 467
Query: 408 LLHTLHSDVWGPAPMTSMNGFRFYLIIVDECSRFSWYFPLRRKSEVGLVLIQSITLMENQ 587
+L +H D+WG AP+ S GF +Y++ +D+ SRF+W +PL+ KS+ + +Q L+ENQ
Sbjct: 468 VLGLVHCDIWGLAPVKSNLGFNYYVLFIDDYSRFTWLYPLKLKSDFFDIFLQFQKLVENQ 527
Query: 588 LNKKVKIIQTDGGGEYTSHLLRDYFIKQGISHLLSCPGTPEQNGLAERKHRHVVETGLTM 767
+ K+KI Q+DGG E+TS+ + + + GI H +SCP TP QNG AERKHRHV ETGL +
Sbjct: 528 YSTKIKIFQSDGGAEFTSNRFQSHLQQFGIHHQMSCPYTPSQNGRAERKHRHVTETGLAL 587
Query: 768 MAHAHLPSHFWNIAFATAVYLINRLPSKPMQGRTPFEALFGSCPSYNHLRTLGCACFPLL 947
+ H+H+P +W AF+TA Y+INRLP + G +PFE LFG P+Y + GC +P L
Sbjct: 588 LFHSHVPPRYWVDAFSTATYIINRLPLPVLGGLSPFEVLFGKSPNYENFHPFGCRVYPCL 647
Query: 948 EPFGRGKLDYKSLECVFIGYSGQHKGYKCLDISTGKIYISRHVSFDERTFPFA 1106
+ K +SL C+F+GYS HKG++C D +T + YI+RH FDE FPF+
Sbjct: 648 RDYAPHKFSPRSLPCIFLGYSSSHKGFRCFDTTTSRTYITRHARFDEHFFPFS 700
>gb|AAC79110.1| putative polyprotein of LTR transposon [Arabidopsis thaliana]
gi|7269781|emb|CAB77781.1| putative polyprotein of LTR
transposon [Arabidopsis thaliana]
Length = 1456
Score = 301 bits (772), Expect = 3e-79
Identities = 151/340 (44%), Positives = 218/340 (64%), Gaps = 9/340 (2%)
Frame = +3
Query: 114 FYPWGFEIKNLQSGQTVLKGSRHGGLYPIGIGDSLPAAGFFS--NKTDGDTWHARLGHPS 287
F+P F++K+L +G +L+G LY I S + F S +K +WH+RLGHPS
Sbjct: 395 FFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQAVSMFASPCSKATHSSWHSRLGHPS 454
Query: 288 FALMKSL---HSSIQANK----IFCRSCKLGKSSKVPFSRRTFYLNELLHTLHSDVWGPA 446
A++ S+ HS N + C C + KS KVPFS T ++ L ++SDVW +
Sbjct: 455 LAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWS-S 513
Query: 447 PMTSMNGFRFYLIIVDECSRFSWYFPLRRKSEVGLVLIQSITLMENQLNKKVKIIQTDGG 626
P+ S++ +R+Y+I VD +R++W +PL++KS+V I +L+EN+ ++ + +D G
Sbjct: 514 PILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNG 573
Query: 627 GEYTSHLLRDYFIKQGISHLLSCPGTPEQNGLAERKHRHVVETGLTMMAHAHLPSHFWNI 806
GE+ +LRDY + GISH S P TPE NGL+ERKHRH+VE GLT+++HA +P +W
Sbjct: 574 GEFV--VLRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPY 631
Query: 807 AFATAVYLINRLPSKPMQGRTPFEALFGSCPSYNHLRTLGCACFPLLEPFGRGKLDYKSL 986
AF+ AVYLINRLP+ +Q ++PF+ LFG P+Y L+ GCAC+P L P+ R KL+ KS
Sbjct: 632 AFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLRPYNRHKLEDKSK 691
Query: 987 ECVFIGYSGQHKGYKCLDISTGKIYISRHVSFDERTFPFA 1106
+C F+GYS Y CL I TG++Y SRHV FDER FPF+
Sbjct: 692 QCAFMGYSLTQSAYLCLHIPTGRLYTSRHVQFDERCFPFS 731
>dbj|BAM42650.1| Polyprotein [Arabidopsis thaliana]
Length = 1475
Score = 301 bits (771), Expect = 4e-79
Identities = 151/340 (44%), Positives = 218/340 (64%), Gaps = 9/340 (2%)
Frame = +3
Query: 114 FYPWGFEIKNLQSGQTVLKGSRHGGLYPIGIGDSLPAAGFFS--NKTDGDTWHARLGHPS 287
F+P F++K+L +G +L+G LY I S + F S +K +WH+RLGHPS
Sbjct: 414 FFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQAVSMFASPCSKATHSSWHSRLGHPS 473
Query: 288 FALMKSL---HSSIQANK----IFCRSCKLGKSSKVPFSRRTFYLNELLHTLHSDVWGPA 446
A++ S+ HS N + C C + KS KVPFS T ++ L ++SDVW +
Sbjct: 474 LAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWS-S 532
Query: 447 PMTSMNGFRFYLIIVDECSRFSWYFPLRRKSEVGLVLIQSITLMENQLNKKVKIIQTDGG 626
P+ S++ +R+Y+I VD +R++W +PL++KS+V I +L+EN+ ++ + +D G
Sbjct: 533 PILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNG 592
Query: 627 GEYTSHLLRDYFIKQGISHLLSCPGTPEQNGLAERKHRHVVETGLTMMAHAHLPSHFWNI 806
GE+ +LRDY + GISH S P TPE NGL+ERKHRH+VE GLT+++HA +P +W
Sbjct: 593 GEFV--VLRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTILSHASVPKTYWPY 650
Query: 807 AFATAVYLINRLPSKPMQGRTPFEALFGSCPSYNHLRTLGCACFPLLEPFGRGKLDYKSL 986
AF+ AVYLINRLP+ +Q ++PF+ LFG P+Y L+ GCAC+P L P+ R KL+ KS
Sbjct: 651 AFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLRPYNRHKLEDKSK 710
Query: 987 ECVFIGYSGQHKGYKCLDISTGKIYISRHVSFDERTFPFA 1106
+C F+GYS Y CL I TG++Y SRHV FDER FPF+
Sbjct: 711 QCAFMGYSLTQSAYLCLHIPTGRLYTSRHVQFDERCFPFS 750