BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Stemona21_contig00025107
         (1735 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN79061.1| hypothetical protein VITISV_024577 [Vitis vinifera]   314   1e-86
emb|CAN77122.1| hypothetical protein VITISV_013624 [Vitis vinifera]   285   4e-78
emb|CAN68235.1| hypothetical protein VITISV_037104 [Vitis vinifera]   278   6e-76
gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group...   280   4e-75
gb|ABA99612.1| retrotransposon protein, putative, unclassified [...   275   9e-74
emb|CAH66391.1| OSIGBa0134J07.9 [Oryza sativa Indica Group]           274   3e-73
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi...   265   5e-68
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]         265   5e-68
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal...   265   5e-68
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi...   262   3e-67
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A...   262   3e-67
emb|CAN74303.1| hypothetical protein VITISV_032980 [Vitis vinifera]   256   2e-65
emb|CAN71445.1| hypothetical protein VITISV_042489 [Vitis vinifera]   254   8e-65
gb|ABA95820.1| retrotransposon protein, putative, unclassified [...   188   3e-64
gb|AAL75752.1|AC037197_10 Putative copia-type polyprotein [Oryza...   234   4e-64
emb|CAN60366.1| hypothetical protein VITISV_031870 [Vitis vinifera]   251   5e-64
emb|CAN80930.1| hypothetical protein VITISV_005279 [Vitis vinifera]   237   5e-64
emb|CAN71037.1| hypothetical protein VITISV_011061 [Vitis vinifera]   236   9e-64
emb|CAN72676.1| hypothetical protein VITISV_020406 [Vitis vinifera]   248   9e-64
gb|ABW74566.1| integrase [Boechera divaricarpa]                       249   2e-63

>emb|CAN79061.1| hypothetical protein VITISV_024577 [Vitis vinifera]
          Length = 1424

 Score =  314 bits (805), Expect(2) = 1e-86
 Identities = 159/328 (48%), Positives = 220/328 (67%), Gaps = 3/328 (0%)
 Frame = -2

Query: 1662 QDKRGTRFIKYVLLVPSLEQNLLSVGQMMQNGYSLFFDGDSCSIYDKKNKNQEIARVKIE 1483
            Q K GT++I+ VLLVP+LEQ LLSVGQ++++GY L F+ + C+IYDK+ +   + ++K+E
Sbjct: 467  QXKVGTKYIRDVLLVPALEQXLLSVGQLVEHGYKLHFENNECTIYDKEQRRNLVKKIKME 526

Query: 1482 RNRNFPIQWQYALQTSMKAS-IDDSWLWHRRWRFGHFNFHGLQILHQKNMMRDFPSIQ*Y 1306
            +NR+FPI ++Y    +++   ++++WLWHRR  FGH NF+ L++L Q+ M          
Sbjct: 527  KNRSFPIVFKYVENVALRMEDVEEAWLWHRR--FGHLNFNSLKMLCQRKM---------- 574

Query: 1305 EGACEGCLLGKQHGQPFHTGKAWRATKLLELVHKDICGPMRTPSLDQRRYFILFIDDYSI 1126
                        H Q F  G AWRA K+LELVH DICGPM TPS    +YF+LFIDD++ 
Sbjct: 575  -----------HHRQSFPKGVAWRAKKVLELVHTDICGPMSTPSQGNNKYFVLFIDDFTR 623

Query: 1125 MTWVYFLCEKSEVLSIFKKFKSFAEKQSGHSIKMLRSDRGKEYNSGEFDRFCEEEGVEHQ 946
            MTWV+F+ +KSEV SIFKKFKSF EKQSG  IK LRSDRG EY S +F  FCE+EGVE Q
Sbjct: 624  MTWVFFMKQKSEVFSIFKKFKSFVEKQSGCYIKTLRSDRGMEYTSSQFGNFCEDEGVERQ 683

Query: 945  LPVGYTPQ*NGV*KKESHSYGDGEIHADGERTSKDILGRSSLYNS--LLNRCLTKAV*DK 772
            L V YTPQ NGV ++++ +  +       E+    I    ++  +  LLNRC TKA+ +K
Sbjct: 684  LTVAYTPQQNGVVERKNQTVMEMAKAMLYEKGLPKIFWAEAVNTAVYLLNRCPTKALLNK 743

Query: 771  TPIEAWSGQKPSAKHLRIFQSICHVHIP 688
            TPIEAWSG+KPS +H ++F  +C+  +P
Sbjct: 744  TPIEAWSGRKPSVRHFKVFGCLCYSQVP 771



 Score = 35.0 bits (79), Expect(2) = 1e-86
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = -3

Query: 1733 SVKSQVKMGNGALVETKDKGTIAVKTR 1653
            ++ SQVKMGNG LV  K KGT+ ++ +
Sbjct: 443  TINSQVKMGNGDLVNVKGKGTVGIQXK 469



 Score =  161 bits (407), Expect(2) = 6e-66
 Identities = 100/233 (42%), Positives = 141/233 (60%), Gaps = 15/233 (6%)
 Frame = -3

Query: 914  VSERKNRTVMEMARSMLMEKGLPKTFWAEAVYTTVYLIDV*RKQFKTRHLL-KHGVDR-S 741
            V ERKN+TVMEMA++ML EKGLPK FWAEAV T VYL++    +  T+ LL K  ++  S
Sbjct: 695  VVERKNQTVMEMAKAMLYEKGLPKIFWAEAVNTAVYLLN----RCPTKALLNKTPIEAWS 750

Query: 740  RQRNILEFFNLYAMCIFRQXXXXXXXXXXXE--RGIFLGYSSKSKGYRVYNIKTKKLVIS 567
             ++  +  F ++    + Q              + IF+GYSS+SKGYR+YN+KT KL+IS
Sbjct: 751  GRKPSVRHFKVFGCLCYSQVPKQRRSKLDETSEKCIFMGYSSQSKGYRLYNLKTXKLIIS 810

Query: 566  PDVEFDENATWNWKAEKI-EKQATISELQGEDAV-----ALATTTQPGSLRSSPSTSRQE 405
             DV FDE   WNW+  KI +K   + ELQ +  V     + +T++   S RS P +   E
Sbjct: 811  RDVIFDEKVAWNWEEGKILKKTILVDELQTKAPVETGNGSTSTSSPQESPRSVPLSPSIE 870

Query: 404  EATS-----ESPPRKTKSLSEIYETFNFSLMEPESFEDASRHEEWMKAMNEEI 261
              TS      S PRK +SL+++YE  N  ++EP+SFE+A + E+W KAM +EI
Sbjct: 871  SPTSXSSSPSSTPRKMRSLTDVYERCNLCIVEPQSFEEAIKDEDWRKAMEKEI 923



 Score =  119 bits (297), Expect(2) = 6e-66
 Identities = 56/89 (62%), Positives = 73/89 (82%), Gaps = 6/89 (6%)
 Frame = -1

Query: 256  IRMIEKNETWELVDRPQGKDII------EVRWVYKTKLNSDGSIQKHKARLVAKGYSQQP 95
            I +IEKNETW+LV++P+ K+II       V+W+++ K +SDG +Q+ KARLVAKGYSQQP
Sbjct: 923  IDVIEKNETWQLVEKPKDKEIIGVKWIFRVKWIFRXKYHSDGRVQRLKARLVAKGYSQQP 982

Query: 94   GIDYNETFAPVARLDTIRAVIALAAQKKW 8
            G D++ETFAPVARLDTIR +IA+AAQK W
Sbjct: 983  GXDFHETFAPVARLDTIRTIIAVAAQKGW 1011


>emb|CAN77122.1| hypothetical protein VITISV_013624 [Vitis vinifera]
          Length = 1269

 Score =  285 bits (728), Expect(2) = 4e-78
 Identities = 152/326 (46%), Positives = 204/326 (62%), Gaps = 2/326 (0%)
 Frame = -2

Query: 1656 KRGTRFIKYVLLVPSLEQNLLSVGQMMQNGYSLFFDGDSCSIYDKKNKNQEIARVKIERN 1477
            KRGT+ +  VL +P L+QNLLSV QM++NGY++ F  + C I D      +IA++K+  N
Sbjct: 365  KRGTKIVTNVLYIPDLDQNLLSVAQMLRNGYAVSFKENFCFISDVHGT--KIAKIKMNGN 422

Query: 1476 RNFPIQWQYALQTSMKASIDDSWLWHRRWRFGHFNFHGLQILHQKNMMRDFPSIQ*YEGA 1297
             +F ++          A ID+S +WH+R  +GHFN   L+ + +  M+ D P I      
Sbjct: 423  -SFYLKLDLVEGHVFSAKIDESVVWHKR--YGHFNLKSLRFMQEAGMVEDMPEISVNAQT 479

Query: 1296 CEGCLLGKQHGQPFHTGKAWRATKLLELVHKDICGPMRTPSLDQRRYFILFIDDYSIMTW 1117
            CE C LGKQ  QPF    + RAT  LEL+H DICGPM T SL    YF LFIDD+S MTW
Sbjct: 480  CESCELGKQQRQPFPQNMSKRATHKLELIHSDICGPMSTTSLSNNVYFALFIDDFSRMTW 539

Query: 1116 VYFLCEKSEVLSIFKKFKSFAEKQSGHSIKMLRSDRGKEYNSGEFDRFCEEEGVEHQLPV 937
            VYFL  KS+VLS+FK FK   E QSG ++K+LR+D G EY S EF  FC+E G+ HQL  
Sbjct: 540  VYFLKTKSQVLSMFKSFKKMVETQSGQNVKVLRTDNGGEYTSKEFSVFCQEAGIVHQLTA 599

Query: 936  GYTPQ*NGV*KKESHSYGDGEIHADGERTSKDILGRSSLYNS--LLNRCLTKAV*DKTPI 763
             Y+PQ NGV K+++ +  +       E+    +L   ++  S  LLNR  TK+V  KTPI
Sbjct: 600  PYSPQQNGVSKRKNRTVMEMARCMLFEKKLPKLLWAEAVNTSVYLLNRLPTKSVQSKTPI 659

Query: 762  EAWSGQKPSAKHLRIFQSICHVHIPT 685
            EAWSG KPS KHL++F S C++H+P+
Sbjct: 660  EAWSGVKPSVKHLKVFGSFCYLHVPS 685



 Score = 36.2 bits (82), Expect(2) = 4e-78
 Identities = 15/27 (55%), Positives = 22/27 (81%)
 Frame = -3

Query: 1733 SVKSQVKMGNGALVETKDKGTIAVKTR 1653
            SV+ +VK+GNG +V+ K KGTIA+ T+
Sbjct: 339  SVQPKVKLGNGEVVQAKGKGTIAISTK 365



 Score =  117 bits (292), Expect(2) = 6e-50
 Identities = 79/221 (35%), Positives = 112/221 (50%), Gaps = 3/221 (1%)
 Frame = -3

Query: 914  VSERKNRTVMEMARSMLMEKGLPKTFWAEAVYTTVYLID---V*RKQFKTRHLLKHGVDR 744
            VS+RKNRTVMEMAR ML EK LPK  WAEAV T+VYL++       Q KT      GV  
Sbjct: 608  VSKRKNRTVMEMARCMLFEKKLPKLLWAEAVNTSVYLLNRLPTKSVQSKTPIEAWSGVKP 667

Query: 743  SRQRNILEFFNLYAMCIFRQXXXXXXXXXXXERGIFLGYSSKSKGYRVYNIKTKKLVISP 564
            S +   L+ F  +   +              E+G+F+GY ++SKGYR+Y++   K+VIS 
Sbjct: 668  SVKH--LKVFGSFCY-LHVPSVKRGKLDERAEKGVFVGYVAESKGYRIYSLSRMKIVISR 724

Query: 563  DVEFDENATWNWKAEKIEKQATISELQGEDAVALATTTQPGSLRSSPSTSRQEEATSESP 384
            DV FDEN+ WNW  +K+     + +LQ    +                            
Sbjct: 725  DVHFDENSYWNWDLKKV--HLMLKQLQTHQCL---------------------------- 754

Query: 383  PRKTKSLSEIYETFNFSLMEPESFEDASRHEEWMKAMNEEI 261
              + + LS++YE  N   +EP  + +A+R  EW++AM  EI
Sbjct: 755  --RMRPLSDVYERCNLVHVEPTCYTEAARFLEWIEAMKAEI 793



 Score =  109 bits (273), Expect(2) = 6e-50
 Identities = 49/85 (57%), Positives = 66/85 (77%)
 Frame = -1

Query: 256  IRMIEKNETWELVDRPQGKDIIEVRWVYKTKLNSDGSIQKHKARLVAKGYSQQPGIDYNE 77
            I  IE+N TW+L + P+ K+ I V+WV++TK NSDGSI +HKARLV KG++Q  G+DY +
Sbjct: 793  IDAIERNGTWKLTELPEAKNAIGVKWVFRTKFNSDGSIFRHKARLVVKGFAQVAGVDYGD 852

Query: 76   TFAPVARLDTIRAVIALAAQKKWRI 2
            TFAPVAR DTIR ++ALA Q  W++
Sbjct: 853  TFAPVARHDTIRLLLALAGQMGWKV 877


>emb|CAN68235.1| hypothetical protein VITISV_037104 [Vitis vinifera]
          Length = 2041

 Score =  278 bits (711), Expect(2) = 6e-76
 Identities = 150/326 (46%), Positives = 200/326 (61%), Gaps = 2/326 (0%)
 Frame = -2

Query: 1656 KRGTRFIKYVLLVPSLEQNLLSVGQMMQNGYSLFFDGDSCSIYDKKNKNQEIARVKIERN 1477
            KRGT+ +  VL +P L+QNLLSV QM++NGY + F  + C I D      EI ++K+  N
Sbjct: 1098 KRGTKIVTNVLYIPDLDQNLLSVAQMLRNGYXVSFKENFCFISDVHGT--EIXKIKMNGN 1155

Query: 1476 RNFPIQWQYALQTSMKASIDDSWLWHRRWRFGHFNFHGLQILHQKNMMRDFPSIQ*YEGA 1297
             +F ++          A ID+S +WH+R  + HFN   L+ + +  M+ D P I      
Sbjct: 1156 -SFYLKLDLVEGHVFSAKIDESVVWHKR--YXHFNLKSLRFMQEAXMVEDMPEISVNAQT 1212

Query: 1296 CEGCLLGKQHGQPFHTGKAWRATKLLELVHKDICGPMRTPSLDQRRYFILFIDDYSIMTW 1117
            CE C LGKQ  QPF    + RAT  LEL+H DICGPM T SL    YF LFIDD+S MTW
Sbjct: 1213 CESCELGKQQRQPFPQNMSKRATHKLELIHSDICGPMSTTSLSNNVYFALFIDDFSRMTW 1272

Query: 1116 VYFLCEKSEVLSIFKKFKSFAEKQSGHSIKMLRSDRGKEYNSGEFDRFCEEEGVEHQLPV 937
            VYFL  KS+VLS+FK FK   E QSG  +K+LR+D G EY S EF  FC+E G+ HQL  
Sbjct: 1273 VYFLKTKSQVLSMFKSFKKMVETQSGQXVKVLRTDNGGEYTSKEFSVFCQEAGIVHQLTA 1332

Query: 936  GYTPQ*NGV*KKESHSYGDGEIHADGERTSKDILGRSSLYNS--LLNRCLTKAV*DKTPI 763
             Y+PQ NGV ++++ +  +       E+    +L   ++  S  LLNR  TK+V  KTPI
Sbjct: 1333 PYSPQXNGVSERKNRTVMEMARCMLFEKKLPKLLWAEAVNTSVYLLNRLPTKSVQSKTPI 1392

Query: 762  EAWSGQKPSAKHLRIFQSICHVHIPT 685
            EAWSG KPS KHL++F S C++H+P+
Sbjct: 1393 EAWSGVKPSVKHLKVFGSFCYLHVPS 1418



 Score = 35.4 bits (80), Expect(2) = 6e-76
 Identities = 15/27 (55%), Positives = 21/27 (77%)
 Frame = -3

Query: 1733 SVKSQVKMGNGALVETKDKGTIAVKTR 1653
            SV+ +VK+GNG  V+ K KGTIA+ T+
Sbjct: 1072 SVQPKVKLGNGEXVQAKGKGTIAISTK 1098



 Score =  134 bits (338), Expect(2) = 3e-55
 Identities = 91/223 (40%), Positives = 124/223 (55%), Gaps = 5/223 (2%)
 Frame = -3

Query: 914  VSERKNRTVMEMARSMLMEKGLPKTFWAEAVYTTVYLID---V*RKQFKTRHLLKHGVDR 744
            VSERKNRTVMEMAR ML EK LPK  WAEAV T+VYL++       Q KT      GV  
Sbjct: 1341 VSERKNRTVMEMARCMLFEKKLPKLLWAEAVNTSVYLLNRLPTKSVQSKTPIEAWSGVKP 1400

Query: 743  SRQRNILEFFNLYAMCIFRQXXXXXXXXXXXERGIFLGYSSKSKGYRVYNIKTKKLVISP 564
            S +   L+ F  +   +              E+G+F+GY+++SKGYR+Y++   K+VIS 
Sbjct: 1401 SVKH--LKVFGSFCY-LHVPSVKRGKLDERAEKGVFVGYAAESKGYRIYSLSRMKIVISR 1457

Query: 563  DVEFDENATWNWKAEKIEK--QATISELQGEDAVALATTTQPGSLRSSPSTSRQEEATSE 390
            DV FDEN+ W W  +K+ K  Q T S L+     A+ +T   G L          EATS+
Sbjct: 1458 DVHFDENSYWXWDLKKVHKCDQTTPSILE----PAIESTIIEGPL--------DVEATSD 1505

Query: 389  SPPRKTKSLSEIYETFNFSLMEPESFEDASRHEEWMKAMNEEI 261
            +P  K + L ++YE  N    EP  + +A+R  EW++AM  EI
Sbjct: 1506 TPVLKMRPLFDVYERCNLVHAEPTCYTEAARFLEWIEAMKAEI 1548



 Score =  109 bits (273), Expect(2) = 3e-55
 Identities = 49/85 (57%), Positives = 66/85 (77%)
 Frame = -1

Query: 256  IRMIEKNETWELVDRPQGKDIIEVRWVYKTKLNSDGSIQKHKARLVAKGYSQQPGIDYNE 77
            I  IE+N TW+L + P+ K+ I V+WV++TK NSDGSI +HKARLV KG++Q  G+DY +
Sbjct: 1548 IDAIERNGTWKLTELPEAKNAIGVKWVFRTKFNSDGSIFRHKARLVVKGFAQVAGVDYGD 1607

Query: 76   TFAPVARLDTIRAVIALAAQKKWRI 2
            TFAPVAR DTIR ++ALA Q  W++
Sbjct: 1608 TFAPVARHDTIRLLLALAGQMGWKV 1632


>gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108711922|gb|ABF99717.1| retrotransposon protein,
            putative, unclassified [Oryza sativa Japonica Group]
          Length = 1335

 Score =  280 bits (715), Expect(2) = 4e-75
 Identities = 144/327 (44%), Positives = 207/327 (63%), Gaps = 2/327 (0%)
 Frame = -2

Query: 1662 QDKRGTRFIKYVLLVPSLEQNLLSVGQMMQNGYSLFFDGDSCSIYDKKNKNQEIARVKIE 1483
            Q   G +FIK VLLVP L+QNLLS+GQ++++GY+++F+  SC I D+KN N+ +A++ +E
Sbjct: 373  QTADGPKFIKDVLLVPDLKQNLLSIGQLLEHGYAVYFEDFSCKILDRKN-NRLVAKINME 431

Query: 1482 RNRNFPIQWQYALQTSMKASIDDSWLWHRRWRFGHFNFHGLQILHQKNMMRDFPSIQ*YE 1303
            +NRNF ++  +  Q ++++ +D S LWH+R   GH N+  L++L  K M++  P I    
Sbjct: 432  KNRNFLLRMNHTTQMALRSEVDISDLWHKR--MGHLNYRALKLLRTKGMVQGLPFITLKS 489

Query: 1302 GACEGCLLGKQHGQPFHTGKAWRATKLLELVHKDICGPMRTPSLDQRRYFILFIDDYSIM 1123
              CEGC+ GKQ    F    AWRA+  LELVH DI G + T S     YFI FIDDY+ M
Sbjct: 490  DPCEGCVFGKQIRASFPHSGAWRASAPLELVHADIVGKVPTISEGGNWYFITFIDDYTRM 549

Query: 1122 TWVYFLCEKSEVLSIFKKFKSFAEKQSGHSIKMLRSDRGKEYNSGEFDRFCEEEGVEHQL 943
             WVYFL EKS  L IFKKFK+  E QS   IK+LRSD+G+EY S EF+++CE  G+  QL
Sbjct: 550  IWVYFLKEKSAALEIFKKFKAMVENQSNRKIKVLRSDQGREYISKEFEKYCENAGIRRQL 609

Query: 942  PVGYTPQ*NGV*KKESHSYGDGEIHADGERTSKDILGRSSLYNS--LLNRCLTKAV*DKT 769
              GY+ Q NGV ++++ +  D       ++         ++  +  +LNR  TKAV ++T
Sbjct: 610  TAGYSAQQNGVAERKNRTINDMANSMLQDKGMPKSFWAEAVNTAVYILNRSPTKAVTNRT 669

Query: 768  PIEAWSGQKPSAKHLRIFQSICHVHIP 688
            P EAW G+KP   H+R+F  IC+  +P
Sbjct: 670  PFEAWYGKKPVIGHMRVFGCICYAQVP 696



 Score = 31.2 bits (69), Expect(2) = 4e-75
 Identities = 11/28 (39%), Positives = 22/28 (78%)
 Frame = -3

Query: 1733 SVKSQVKMGNGALVETKDKGTIAVKTRE 1650
            S  +++ MGNG++ +++ KGT+AV+T +
Sbjct: 349  SYHAKIHMGNGSIAQSEGKGTVAVQTAD 376



 Score =  139 bits (351), Expect(2) = 7e-65
 Identities = 63/85 (74%), Positives = 77/85 (90%)
 Frame = -1

Query: 256  IRMIEKNETWELVDRPQGKDIIEVRWVYKTKLNSDGSIQKHKARLVAKGYSQQPGIDYNE 77
            I MIEKN TWELVDRP+ +++I V+WVYKTKLN DGS+QK+KARLVAKG+ Q+PGIDY E
Sbjct: 866  IHMIEKNNTWELVDRPRDREVIGVKWVYKTKLNPDGSVQKYKARLVAKGFKQKPGIDYYE 925

Query: 76   TFAPVARLDTIRAVIALAAQKKWRI 2
            T+APVARL+TIR +IALAAQK+W+I
Sbjct: 926  TYAPVARLETIRTIIALAAQKRWKI 950



 Score =  137 bits (344), Expect(2) = 7e-65
 Identities = 87/255 (34%), Positives = 137/255 (53%), Gaps = 37/255 (14%)
 Frame = -3

Query: 914  VSERKNRTVMEMARSMLMEKGLPKTFWAEAVYTTVYLIDV*RKQFKTRHLLKHGVDRSR- 738
            V+ERKNRT+ +MA SML +KG+PK+FWAEAV T VY+++        R   K   +R+  
Sbjct: 620  VAERKNRTINDMANSMLQDKGMPKSFWAEAVNTAVYILN--------RSPTKAVTNRTPF 671

Query: 737  -----QRNILEFFNLYAMCIFRQXXXXXXXXXXXE--RGIFLGYSSKSKGYRVYNIKTKK 579
                 ++ ++    ++    + Q           +  R IF+GY+   KGYR+YN++ KK
Sbjct: 672  EAWYGKKPVIGHMRVFGCICYAQVPAQKRVKFDNKSDRCIFVGYADGIKGYRLYNLEKKK 731

Query: 578  LVISPDVEFDENATWNWKAEKIEKQATI---------SELQGEDAVALAT-TTQPGSLRS 429
            ++IS D  FDE+ATWNWK+ +      +           + G   V   T + QP S  S
Sbjct: 732  IIISRDAIFDESATWNWKSPEASSTPLLPTTTITLGQPHMHGTHEVEDHTPSPQPSSPMS 791

Query: 428  SPS-------TSRQEEATSESPPRKTKSL------------SEIYETFNFSLMEPESFED 306
            S S       +S ++ +T ES PR+ +S+            SE +E  N+S++EP+SF++
Sbjct: 792  SSSASSDSSPSSEEQISTPESAPRRVRSMVELLESTSQQRGSEQHEFCNYSVVEPQSFQE 851

Query: 305  ASRHEEWMKAMNEEI 261
            A +H+ W+KAM +EI
Sbjct: 852  AEKHDNWIKAMEDEI 866


>gb|ABA99612.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1198

 Score =  275 bits (703), Expect(2) = 9e-74
 Identities = 144/327 (44%), Positives = 205/327 (62%), Gaps = 2/327 (0%)
 Frame = -2

Query: 1662 QDKRGTRFIKYVLLVPSLEQNLLSVGQMMQNGYSLFFDGDSCSIYDKKNKNQEIARVKIE 1483
            Q   G +FIK VLLVP L+QNLLS+GQ++++GY+++F+  SC I D+KN N+ +A++ +E
Sbjct: 324  QTADGPKFIKDVLLVPDLKQNLLSIGQLLEHGYAVYFEDFSCKILDRKN-NRLVAKINME 382

Query: 1482 RNRNFPIQWQYALQTSMKASIDDSWLWHRRWRFGHFNFHGLQILHQKNMMRDFPSIQ*YE 1303
            +N NF ++  +  Q ++++ ID S LWH+R   GH N+  L++L  K M++  P I    
Sbjct: 383  KNINFLLRMNHPTQMALRSEIDISDLWHKR--MGHLNYRALKLLRTKGMVQGLPFITLKS 440

Query: 1302 GACEGCLLGKQHGQPFHTGKAWRATKLLELVHKDICGPMRTPSLDQRRYFILFIDDYSIM 1123
              CEGC+ GKQ    F    AWRA+  LELVH DI G + T S     YFI FIDDY+ M
Sbjct: 441  DPCEGCVFGKQIRASFPHSGAWRASAPLELVHTDIVGKVPTISEGGNWYFITFIDDYTRM 500

Query: 1122 TWVYFLCEKSEVLSIFKKFKSFAEKQSGHSIKMLRSDRGKEYNSGEFDRFCEEEGVEHQL 943
             WVYFL EKS  L IFKKFK+  E QS   IK+LRSD+G EY S EF+++CE  G+  QL
Sbjct: 501  IWVYFLKEKSAALEIFKKFKAMVENQSNRKIKVLRSDQGGEYISKEFEKYCENAGIRRQL 560

Query: 942  PVGYTPQ*NGV*KKESHSYGDGEIHADGERTSKDILGRSSLYNS--LLNRCLTKAV*DKT 769
              GY+ Q NGV ++++ +  D       ++         ++  +  +LNR  TKAV ++T
Sbjct: 561  TAGYSAQQNGVAERKNRTINDMANSMLQDKGMPKSFWAEAVNTAIYILNRSPTKAVPNRT 620

Query: 768  PIEAWSGQKPSAKHLRIFQSICHVHIP 688
            P EAW G+KP   H+R+F  IC+  +P
Sbjct: 621  PFEAWYGKKPVIGHMRVFGCICYAQVP 647



 Score = 31.2 bits (69), Expect(2) = 9e-74
 Identities = 11/28 (39%), Positives = 22/28 (78%)
 Frame = -3

Query: 1733 SVKSQVKMGNGALVETKDKGTIAVKTRE 1650
            S  +++ MGNG++ +++ KGT+AV+T +
Sbjct: 300  SYHAKIHMGNGSIAQSEGKGTVAVQTAD 327



 Score =  139 bits (351), Expect(2) = 2e-35
 Identities = 63/85 (74%), Positives = 77/85 (90%)
 Frame = -1

Query: 256 IRMIEKNETWELVDRPQGKDIIEVRWVYKTKLNSDGSIQKHKARLVAKGYSQQPGIDYNE 77
           I MIEKN TWELVDRP+ +++I V+WVYKTKLN DGS+QK+KARLVAKG+ Q+PGIDY E
Sbjct: 729 IHMIEKNNTWELVDRPRDREVIGVKWVYKTKLNPDGSVQKYKARLVAKGFKQKPGIDYYE 788

Query: 76  TFAPVARLDTIRAVIALAAQKKWRI 2
           T+APVARL+TIR +IALAAQK+W+I
Sbjct: 789 TYAPVARLETIRTIIALAAQKRWKI 813



 Score = 38.5 bits (88), Expect(2) = 2e-35
 Identities = 13/25 (52%), Positives = 22/25 (88%)
 Frame = -3

Query: 335 SLMEPESFEDASRHEEWMKAMNEEI 261
           S++EP+SF++A +H+ W+KAM +EI
Sbjct: 705 SIVEPQSFQEAEKHDNWIKAMEDEI 729



 Score = 99.0 bits (245), Expect = 6e-18
 Identities = 54/139 (38%), Positives = 83/139 (59%), Gaps = 8/139 (5%)
 Frame = -3

Query: 914 VSERKNRTVMEMARSMLMEKGLPKTFWAEAVYTTVYLIDV*RKQFKTRHLLKHGVDRSR- 738
           V+ERKNRT+ +MA SML +KG+PK+FWAEAV T +Y+++        R   K   +R+  
Sbjct: 571 VAERKNRTINDMANSMLQDKGMPKSFWAEAVNTAIYILN--------RSPTKAVPNRTPF 622

Query: 737 -----QRNILEFFNLYAMCIFRQXXXXXXXXXXXE--RGIFLGYSSKSKGYRVYNIKTKK 579
                ++ ++    ++    + Q           +  R IF+GY+   KGYR+YN++ KK
Sbjct: 623 EAWYGKKPVIGHMRVFGCICYAQVPAQKRVKFDNKSDRCIFVGYADGIKGYRLYNLEKKK 682

Query: 578 LVISPDVEFDENATWNWKA 522
           ++IS DV FDE+ATWNWK+
Sbjct: 683 IIISRDVIFDESATWNWKS 701


>emb|CAH66391.1| OSIGBa0134J07.9 [Oryza sativa Indica Group]
          Length = 1314

 Score =  274 bits (701), Expect(2) = 3e-73
 Identities = 142/327 (43%), Positives = 203/327 (62%), Gaps = 2/327 (0%)
 Frame = -2

Query: 1662 QDKRGTRFIKYVLLVPSLEQNLLSVGQMMQNGYSLFFDGDSCSIYDKKNKNQEIARVKIE 1483
            Q   G +FIK VLLVP L+QNLLS+GQ++++GY+++F+  SC I D+KN N+ +A++ +E
Sbjct: 380  QTADGPKFIKDVLLVPDLKQNLLSIGQLLEHGYAVYFEDFSCKILDRKN-NRLVAKINME 438

Query: 1482 RNRNFPIQWQYALQTSMKASIDDSWLWHRRWRFGHFNFHGLQILHQKNMMRDFPSIQ*YE 1303
            +NRNF ++  +  Q ++++ +D S LWH+R   GH N+  L++L  K M++  P I    
Sbjct: 439  KNRNFLLRMNHTTQMALRSEVDISDLWHKR--MGHLNYRALKLLRTKGMVQGLPFITLKS 496

Query: 1302 GACEGCLLGKQHGQPFHTGKAWRATKLLELVHKDICGPMRTPSLDQRRYFILFIDDYSIM 1123
              CEGC+ GKQ    F    AWRA+   ELVH DI G + T S     YFI FIDDY+ M
Sbjct: 497  DPCEGCVFGKQIQASFPHSGAWRASAPFELVHTDIVGKVPTMSEGGNWYFITFIDDYTRM 556

Query: 1122 TWVYFLCEKSEVLSIFKKFKSFAEKQSGHSIKMLRSDRGKEYNSGEFDRFCEEEGVEHQL 943
             WVYFL EKS  L  FKKFK   E QS   IK+LRSD+G EY S EF+++CE  G+  QL
Sbjct: 557  IWVYFLKEKSAALETFKKFKVMVENQSNRKIKVLRSDQGGEYISKEFEKYCENAGIRRQL 616

Query: 942  PVGYTPQ*NGV*KKESHSYGDGEIHADGERTSKDILGRSSLYNS--LLNRCLTKAV*DKT 769
              GY+ Q NGV ++++ +  D       ++         ++  +  +LNR  TKAV ++T
Sbjct: 617  TTGYSAQQNGVAERKNRTINDMANSMLQDKGMPKSFWAEAVNTAVYILNRSPTKAVPNRT 676

Query: 768  PIEAWSGQKPSAKHLRIFQSICHVHIP 688
            P EAW G+KP   H+R+F  IC+  +P
Sbjct: 677  PFEAWYGKKPVIGHMRVFACICYAQVP 703



 Score = 30.4 bits (67), Expect(2) = 3e-73
 Identities = 10/25 (40%), Positives = 21/25 (84%)
 Frame = -3

Query: 1724 SQVKMGNGALVETKDKGTIAVKTRE 1650
            +++ MGNG++ +++ KGT+AV+T +
Sbjct: 359  AKIHMGNGSIAQSEGKGTVAVQTAD 383



 Score =  139 bits (350), Expect(2) = 4e-65
 Identities = 89/255 (34%), Positives = 139/255 (54%), Gaps = 37/255 (14%)
 Frame = -3

Query: 914  VSERKNRTVMEMARSMLMEKGLPKTFWAEAVYTTVYLIDV*RKQFKTRHLLKHGVDRSR- 738
            V+ERKNRT+ +MA SML +KG+PK+FWAEAV T VY+++        R   K   +R+  
Sbjct: 627  VAERKNRTINDMANSMLQDKGMPKSFWAEAVNTAVYILN--------RSPTKAVPNRTPF 678

Query: 737  -----QRNILEFFNLYAMCIFRQXXXXXXXXXXXE--RGIFLGYSSKSKGYRVYNIKTKK 579
                 ++ ++    ++A   + Q           +  R IF+GY+   KGYR+YN++ KK
Sbjct: 679  EAWYGKKPVIGHMRVFACICYAQVPAQKRVKFDNKSNRCIFVGYADGIKGYRLYNLEKKK 738

Query: 578  LVISPDVEFDENATWNWKAEKIEKQATI---------SELQGEDAVALAT-TTQPGSLRS 429
            ++IS DV FDE+ATWNWK+ +      +           + G   V   T + QP S  S
Sbjct: 739  IIISRDVFFDESATWNWKSPEASSTPLLPTTTITLGQPHMHGTHEVEDHTPSPQPSSPMS 798

Query: 428  SPS-------TSRQEEATSESPPRKTKSL------------SEIYETFNFSLMEPESFED 306
            S S       +S ++ +T ES PR+ +S+            SE +E  N+S++EP+SF++
Sbjct: 799  SSSASSDSSPSSEEQISTPESAPRRVRSMVELLESTSQQRGSEQHEFCNYSVVEPQSFQE 858

Query: 305  ASRHEEWMKAMNEEI 261
            A +H+ W+KAM +EI
Sbjct: 859  AEKHDNWIKAMEDEI 873



 Score =  138 bits (347), Expect(2) = 4e-65
 Identities = 62/85 (72%), Positives = 76/85 (89%)
 Frame = -1

Query: 256  IRMIEKNETWELVDRPQGKDIIEVRWVYKTKLNSDGSIQKHKARLVAKGYSQQPGIDYNE 77
            I MIEKN TWE VDRP+ +++I V+WVYKTKLN DGS+QK+KARLVAKG+ Q+PGIDY E
Sbjct: 873  IHMIEKNNTWEFVDRPRDREVIGVKWVYKTKLNPDGSVQKYKARLVAKGFKQKPGIDYYE 932

Query: 76   TFAPVARLDTIRAVIALAAQKKWRI 2
            T+APVARL+TIR +IALAAQK+W+I
Sbjct: 933  TYAPVARLETIRTIIALAAQKRWKI 957


>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
            gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
            polyprotein, putative [Arabidopsis thaliana]
          Length = 1320

 Score =  265 bits (677), Expect = 5e-68
 Identities = 143/324 (44%), Positives = 204/324 (62%), Gaps = 5/324 (1%)
 Frame = -2

Query: 1644 RFIKYVLLVPSLEQNLLSVGQMMQNGYSLFFDGDSCSIYDKKNKNQEIARVKIERNRNFP 1465
            +FI  V  +PS++ N+LS+GQ+++ GY +    ++ SI D+++    I +V + +NR F 
Sbjct: 389  QFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNL--ITKVPMSKNRMFV 446

Query: 1464 IQWQYALQTSMKASI-DDSWLWHRRWRFGHFNFHGLQILHQKNMMRDFPSIQ*YEGACEG 1288
            +  +  +   +K    ++SWLWH R  FGH NF GL++L +K M+R  P I      CEG
Sbjct: 447  LNIRNDIAQCLKMCYKEESWLWHLR--FGHLNFGGLELLSRKEMVRGLPCINHPNQVCEG 504

Query: 1287 CLLGKQHGQPFHTGKAWRATKLLELVHKDICGPMRTPSLDQRRYFILFIDDYSIMTWVYF 1108
            CLLGKQ    F    + RA K LEL+H D+CGP++  SL +  YF+LFIDD+S  TWVYF
Sbjct: 505  CLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYF 564

Query: 1107 LCEKSEVLSIFKKFKSFAEKQSGHSIKMLRSDRGKEYNSGEFDRFCEEEGVEHQLPVGYT 928
            L EKSEV  IFKKFK+  EK+SG  IK +RSDRG E+ S EF ++CE+ G+  QL V  +
Sbjct: 565  LKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRS 624

Query: 927  PQ*NGV*KKESHSYGD-GEIHADGERTSKDILGRS---SLYNSLLNRCLTKAV*DKTPIE 760
            PQ NGV ++++ +  +        +R  K++   +   ++Y  LLNR  TK+V  KTP E
Sbjct: 625  PQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVY--LLNRSPTKSVSGKTPQE 682

Query: 759  AWSGQKPSAKHLRIFQSICHVHIP 688
            AWSG+KP   HLR+F SI H H+P
Sbjct: 683  AWSGRKPGVSHLRVFGSIAHAHVP 706



 Score =  118 bits (296), Expect(2) = 2e-46
 Identities = 53/85 (62%), Positives = 68/85 (80%)
 Frame = -1

Query: 256  IRMIEKNETWELVDRPQGKDIIEVRWVYKTKLNSDGSIQKHKARLVAKGYSQQPGIDYNE 77
            I+ I+KN+TWEL   P G   I V+WVYK K NS G ++++KARLVAKGYSQ+ GIDY+E
Sbjct: 826  IKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDE 885

Query: 76   TFAPVARLDTIRAVIALAAQKKWRI 2
             FAPVARL+T+R +I+LAAQ KW+I
Sbjct: 886  VFAPVARLETVRLIISLAAQNKWKI 910



 Score = 96.3 bits (238), Expect(2) = 2e-46
 Identities = 75/227 (33%), Positives = 106/227 (46%), Gaps = 4/227 (1%)
 Frame = -3

Query: 914  VSERKNRTVMEMARSMLMEKGLPKTFWAEAVYTTVYLID-V*RKQFKTRHLLKHGVDRSR 738
            V+ERKNRT++EMARSML  K LPK  WAEAV   VYL++    K    +   +    R  
Sbjct: 630  VAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKP 689

Query: 737  QRNILEFFNLYAMCIFRQXXXXXXXXXXXERGIFLGYSSKSKGYRVYNIKTKKLVISPDV 558
              + L  F   A                  + IF+GY + SKGY++YN  TKK +IS ++
Sbjct: 690  GVSHLRVFGSIAHAHVPDEKRSKLDDKSE-KYIFIGYDNNSKGYKLYNPDTKKTIISRNI 748

Query: 557  EFDENATWNWKAEKIEKQATISELQGEDAVALATTTQPGSLRSSPSTSRQEEATSE-SPP 381
             FDE   W+W + +            ED         P      P  +R+E  + E + P
Sbjct: 749  VFDEEGEWDWNSNE------------ED-----YNFFPHFEEDKPEPTREEPPSEEPTTP 791

Query: 380  RKTKSLSEIYETFNFSLMEPESFEDASRHEEWMKAMNEEITN--KND 246
              + + S+I E       EP  F++A   + W  AM+EEI +  KND
Sbjct: 792  PTSPTSSQIEEK-----CEPMDFQEAIEKKTWRNAMDEEIKSIQKND 833


>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
          Length = 1352

 Score =  265 bits (677), Expect = 5e-68
 Identities = 143/324 (44%), Positives = 204/324 (62%), Gaps = 5/324 (1%)
 Frame = -2

Query: 1644 RFIKYVLLVPSLEQNLLSVGQMMQNGYSLFFDGDSCSIYDKKNKNQEIARVKIERNRNFP 1465
            +FI  V  +PS++ N+LS+GQ+++ GY +    ++ SI D+++    I +V + +NR F 
Sbjct: 389  QFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNL--ITKVPMSKNRMFV 446

Query: 1464 IQWQYALQTSMKASI-DDSWLWHRRWRFGHFNFHGLQILHQKNMMRDFPSIQ*YEGACEG 1288
            +  +  +   +K    ++SWLWH R  FGH NF GL++L +K M+R  P I      CEG
Sbjct: 447  LNIRNDIAQCLKMCYKEESWLWHLR--FGHLNFGGLELLSRKEMVRGLPCINHPNQVCEG 504

Query: 1287 CLLGKQHGQPFHTGKAWRATKLLELVHKDICGPMRTPSLDQRRYFILFIDDYSIMTWVYF 1108
            CLLGKQ    F    + RA K LEL+H D+CGP++  SL +  YF+LFIDD+S  TWVYF
Sbjct: 505  CLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYF 564

Query: 1107 LCEKSEVLSIFKKFKSFAEKQSGHSIKMLRSDRGKEYNSGEFDRFCEEEGVEHQLPVGYT 928
            L EKSEV  IFKKFK+  EK+SG  IK +RSDRG E+ S EF ++CE+ G+  QL V  +
Sbjct: 565  LKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRS 624

Query: 927  PQ*NGV*KKESHSYGD-GEIHADGERTSKDILGRS---SLYNSLLNRCLTKAV*DKTPIE 760
            PQ NGV ++++ +  +        +R  K++   +   ++Y  LLNR  TK+V  KTP E
Sbjct: 625  PQQNGVVERKNRTILEMARSMLKSKRLPKELWAEAVACAVY--LLNRSPTKSVSGKTPQE 682

Query: 759  AWSGQKPSAKHLRIFQSICHVHIP 688
            AWSG+KP   HLR+F SI H H+P
Sbjct: 683  AWSGRKPGVSHLRVFGSIAHAHVP 706



 Score =  118 bits (295), Expect(2) = 7e-51
 Identities = 53/85 (62%), Positives = 68/85 (80%)
 Frame = -1

Query: 256  IRMIEKNETWELVDRPQGKDIIEVRWVYKTKLNSDGSIQKHKARLVAKGYSQQPGIDYNE 77
            I+ I+KN+TWEL   P G   I V+WVYK K NS G ++++KARLVAKGYSQ+ GIDY+E
Sbjct: 858  IKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRVGIDYDE 917

Query: 76   TFAPVARLDTIRAVIALAAQKKWRI 2
             FAPVARL+T+R +I+LAAQ KW+I
Sbjct: 918  VFAPVARLETVRLIISLAAQNKWKI 942



 Score =  111 bits (278), Expect(2) = 7e-51
 Identities = 81/238 (34%), Positives = 118/238 (49%), Gaps = 15/238 (6%)
 Frame = -3

Query: 914  VSERKNRTVMEMARSMLMEKGLPKTFWAEAVYTTVYLID-V*RKQFKTRHLLKHGVDRSR 738
            V ERKNRT++EMARSML  K LPK  WAEAV   VYL++    K    +   +    R  
Sbjct: 630  VVERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKP 689

Query: 737  QRNILEFFNLYAMCIFRQXXXXXXXXXXXERGIFLGYSSKSKGYRVYNIKTKKLVISPDV 558
              + L  F   A                  + IF+GY + SKGY++YN  TKK +IS ++
Sbjct: 690  GVSHLRVFGSIAHAHVPDEKRSKLDDKSE-KYIFIGYDNNSKGYKLYNPDTKKTIISRNI 748

Query: 557  EFDENATWNWKAEKIEKQ--ATISELQGEDAVALATTTQPGSLRSSPSTSRQEEATSESP 384
             FDE   W+W + + +        E + E       + +P +  +SP++S+ EE++SE  
Sbjct: 749  VFDEEGEWDWNSNEEDYNFFPHFEEDEPEPTREEPPSEEPTTPPTSPTSSQIEESSSERT 808

Query: 383  PRKTKSLSEIYETFN----------FSLMEPESFEDASRHEEWMKAMNEEITN--KND 246
            PR  +S+ E+YE             F+  EP  F+ A   + W  AM+EEI +  KND
Sbjct: 809  PR-FRSIQELYEVTENQENLTLFCLFAECEPMDFQKAIEKKTWRNAMDEEIKSIQKND 865


>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
          Length = 1352

 Score =  265 bits (677), Expect = 5e-68
 Identities = 143/324 (44%), Positives = 204/324 (62%), Gaps = 5/324 (1%)
 Frame = -2

Query: 1644 RFIKYVLLVPSLEQNLLSVGQMMQNGYSLFFDGDSCSIYDKKNKNQEIARVKIERNRNFP 1465
            +FI  V  +PS++ N+LS+GQ+++ GY +    ++ SI D+++    I +V + +NR F 
Sbjct: 389  QFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNL--ITKVPMSKNRMFV 446

Query: 1464 IQWQYALQTSMKASI-DDSWLWHRRWRFGHFNFHGLQILHQKNMMRDFPSIQ*YEGACEG 1288
            +  +  +   +K    ++SWLWH R  FGH NF GL++L +K M+R  P I      CEG
Sbjct: 447  LNIRNDIAQCLKMCYKEESWLWHLR--FGHLNFGGLELLSRKEMVRGLPCINHPNQVCEG 504

Query: 1287 CLLGKQHGQPFHTGKAWRATKLLELVHKDICGPMRTPSLDQRRYFILFIDDYSIMTWVYF 1108
            CLLGKQ    F    + RA K LEL+H D+CGP++  SL +  YF+LFIDD+S  TWVYF
Sbjct: 505  CLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYF 564

Query: 1107 LCEKSEVLSIFKKFKSFAEKQSGHSIKMLRSDRGKEYNSGEFDRFCEEEGVEHQLPVGYT 928
            L EKSEV  IFKKFK+  EK+SG  IK +RSDRG E+ S EF ++CE+ G+  QL V  +
Sbjct: 565  LKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRS 624

Query: 927  PQ*NGV*KKESHSYGD-GEIHADGERTSKDILGRS---SLYNSLLNRCLTKAV*DKTPIE 760
            PQ NGV ++++ +  +        +R  K++   +   ++Y  LLNR  TK+V  KTP E
Sbjct: 625  PQQNGVVERKNRTILEMARSMLKSKRLPKELWAEAVACAVY--LLNRSPTKSVSGKTPQE 682

Query: 759  AWSGQKPSAKHLRIFQSICHVHIP 688
            AWSG+KP   HLR+F SI H H+P
Sbjct: 683  AWSGRKPGVSHLRVFGSIAHAHVP 706



 Score =  118 bits (295), Expect(2) = 7e-51
 Identities = 53/85 (62%), Positives = 68/85 (80%)
 Frame = -1

Query: 256  IRMIEKNETWELVDRPQGKDIIEVRWVYKTKLNSDGSIQKHKARLVAKGYSQQPGIDYNE 77
            I+ I+KN+TWEL   P G   I V+WVYK K NS G ++++KARLVAKGYSQ+ GIDY+E
Sbjct: 858  IKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRVGIDYDE 917

Query: 76   TFAPVARLDTIRAVIALAAQKKWRI 2
             FAPVARL+T+R +I+LAAQ KW+I
Sbjct: 918  VFAPVARLETVRLIISLAAQNKWKI 942



 Score =  111 bits (278), Expect(2) = 7e-51
 Identities = 81/238 (34%), Positives = 118/238 (49%), Gaps = 15/238 (6%)
 Frame = -3

Query: 914  VSERKNRTVMEMARSMLMEKGLPKTFWAEAVYTTVYLID-V*RKQFKTRHLLKHGVDRSR 738
            V ERKNRT++EMARSML  K LPK  WAEAV   VYL++    K    +   +    R  
Sbjct: 630  VVERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKP 689

Query: 737  QRNILEFFNLYAMCIFRQXXXXXXXXXXXERGIFLGYSSKSKGYRVYNIKTKKLVISPDV 558
              + L  F   A                  + IF+GY + SKGY++YN  TKK +IS ++
Sbjct: 690  GVSHLRVFGSIAHAHVPDEKRSKLDDKSE-KYIFIGYDNNSKGYKLYNPDTKKTIISRNI 748

Query: 557  EFDENATWNWKAEKIEKQ--ATISELQGEDAVALATTTQPGSLRSSPSTSRQEEATSESP 384
             FDE   W+W + + +        E + E       + +P +  +SP++S+ EE++SE  
Sbjct: 749  VFDEEGEWDWNSNEEDYNFFPHFEEDEPEPTREEPPSEEPTTPPTSPTSSQIEESSSERT 808

Query: 383  PRKTKSLSEIYETFN----------FSLMEPESFEDASRHEEWMKAMNEEITN--KND 246
            PR  +S+ E+YE             F+  EP  F+ A   + W  AM+EEI +  KND
Sbjct: 809  PR-FRSIQELYEVTENQENLTLFCLFAECEPMDFQKAIEKKTWRNAMDEEIKSIQKND 865


>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
          Length = 1352

 Score =  262 bits (670), Expect = 3e-67
 Identities = 142/324 (43%), Positives = 203/324 (62%), Gaps = 5/324 (1%)
 Frame = -2

Query: 1644 RFIKYVLLVPSLEQNLLSVGQMMQNGYSLFFDGDSCSIYDKKNKNQEIARVKIERNRNFP 1465
            +FI  V  +PS++ N+LS+GQ+++ GY +    ++ SI D+++    I +V + +NR F 
Sbjct: 389  QFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNL--ITKVPMSKNRMFV 446

Query: 1464 IQWQYALQTSMKASI-DDSWLWHRRWRFGHFNFHGLQILHQKNMMRDFPSIQ*YEGACEG 1288
            +  +  +   +K    ++SWLWH R  FGH NF GL++L +K M+R  P I      CEG
Sbjct: 447  LNIRNDIAQCLKMCYKEESWLWHLR--FGHLNFGGLELLSRKEMVRGLPCINHPNQVCEG 504

Query: 1287 CLLGKQHGQPFHTGKAWRATKLLELVHKDICGPMRTPSLDQRRYFILFIDDYSIMTWVYF 1108
            CLLGKQ    F    + RA K LEL+H D+CGP++  SL +  YF+LFIDD+S  TWVYF
Sbjct: 505  CLLGKQFKMSFPKESSSRAQKSLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYF 564

Query: 1107 LCEKSEVLSIFKKFKSFAEKQSGHSIKMLRSDRGKEYNSGEFDRFCEEEGVEHQLPVGYT 928
            L EKSEV  IFKKFK+  EK+SG  IK +RSDRG E+ S EF ++CE+ G+  QL V  +
Sbjct: 565  LKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRS 624

Query: 927  PQ*NGV*KKESHSYGD-GEIHADGERTSKDILGRS---SLYNSLLNRCLTKAV*DKTPIE 760
            PQ NGV ++++ +  +        +R  K++   +   ++Y  LLNR  TK+V  KTP E
Sbjct: 625  PQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVY--LLNRSPTKSVSGKTPQE 682

Query: 759  AWSGQKPSAKHLRIFQSICHVHIP 688
            AWSG+K    HLR+F SI H H+P
Sbjct: 683  AWSGRKSGVSHLRVFGSIAHAHVP 706



 Score =  116 bits (290), Expect(2) = 3e-51
 Identities = 52/85 (61%), Positives = 67/85 (78%)
 Frame = -1

Query: 256  IRMIEKNETWELVDRPQGKDIIEVRWVYKTKLNSDGSIQKHKARLVAKGYSQQPGIDYNE 77
            I+ I+KN+TWEL   P G   I V+WVYK K NS G ++++KARLVAKGY Q+ GIDY+E
Sbjct: 858  IKSIQKNDTWELTSLPNGHKTIGVKWVYKAKKNSKGEVERYKARLVAKGYIQRAGIDYDE 917

Query: 76   TFAPVARLDTIRAVIALAAQKKWRI 2
             FAPVARL+T+R +I+LAAQ KW+I
Sbjct: 918  VFAPVARLETVRLIISLAAQNKWKI 942



 Score =  114 bits (286), Expect(2) = 3e-51
 Identities = 79/239 (33%), Positives = 123/239 (51%), Gaps = 16/239 (6%)
 Frame = -3

Query: 914  VSERKNRTVMEMARSMLMEKGLPKTFWAEAVYTTVYLIDV*RKQFKTRHLLKHGVDRSRQ 735
            V+ERKNRT++EMARSML  K LPK  WAEAV   VYL++  R   K+          S +
Sbjct: 630  VAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLN--RSPTKSVSGKTPQEAWSGR 687

Query: 734  RNILEFFNLYAMCIFRQXXXXXXXXXXXE--RGIFLGYSSKSKGYRVYNIKTKKLVISPD 561
            ++ +    ++                  +  + IF+GY + SKGY++YN  TKK +IS +
Sbjct: 688  KSGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRN 747

Query: 560  VEFDENATWNWKAEKIEKQ--ATISELQGEDAVALATTTQPGSLRSSPSTSRQEEATSES 387
            + FDE   W+W + + +        E + E       + +P +  +SP++S+ EE++SE 
Sbjct: 748  IVFDEEGEWDWNSNEEDYNFFPHFEEDEPEPTREEPPSEEPTTPPTSPTSSQIEESSSER 807

Query: 386  PPRKTKSLSEIYETFN----------FSLMEPESFEDASRHEEWMKAMNEEITN--KND 246
             PR  +S+ E+YE             F+  EP  F++A   + W  AM+EEI +  KND
Sbjct: 808  TPR-FRSIQELYEVTENQENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEEIKSIQKND 865


>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis thaliana]
          Length = 1272

 Score =  262 bits (670), Expect = 3e-67
 Identities = 142/324 (43%), Positives = 202/324 (62%), Gaps = 5/324 (1%)
 Frame = -2

Query: 1644 RFIKYVLLVPSLEQNLLSVGQMMQNGYSLFFDGDSCSIYDKKNKNQEIARVKIERNRNFP 1465
            +FI  V  +PS++ N+LS+GQ+++ GY +    ++ SI DK++    I +V + +NR F 
Sbjct: 389  QFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDKESNL--ITKVPMSKNRMFV 446

Query: 1464 IQWQYALQTSMKASI-DDSWLWHRRWRFGHFNFHGLQILHQKNMMRDFPSIQ*YEGACEG 1288
            +  +  +   +K    ++SWLWH R  FGH NF GL++L +K M+R  P I      CEG
Sbjct: 447  LNIRNDIAQCLKMCYKEESWLWHLR--FGHLNFGGLELLSRKEMVRGLPCINHPNQVCEG 504

Query: 1287 CLLGKQHGQPFHTGKAWRATKLLELVHKDICGPMRTPSLDQRRYFILFIDDYSIMTWVYF 1108
            CLLG Q    F    + RA K LEL+H D+CGP++  SL +  YF+LFIDD+S  TWVYF
Sbjct: 505  CLLGNQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYF 564

Query: 1107 LCEKSEVLSIFKKFKSFAEKQSGHSIKMLRSDRGKEYNSGEFDRFCEEEGVEHQLPVGYT 928
            L EKSEV  IFKKFK+  EK+SG  IK +RSD G E+ S EF ++CE+ G+  QL V  +
Sbjct: 565  LKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRS 624

Query: 927  PQ*NGV*KKESHSYGD-GEIHADGERTSKDILGRS---SLYNSLLNRCLTKAV*DKTPIE 760
            PQ NGV ++++ +  +        +R  K++   +   ++Y  LLNR  TK+V  KTP E
Sbjct: 625  PQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVY--LLNRSPTKSVSGKTPQE 682

Query: 759  AWSGQKPSAKHLRIFQSICHVHIP 688
            AWSG+KP   HLR+F SI H H+P
Sbjct: 683  AWSGRKPGVSHLRVFGSIAHAHVP 706



 Score =  118 bits (295), Expect(2) = 2e-51
 Identities = 53/85 (62%), Positives = 68/85 (80%)
 Frame = -1

Query: 256  IRMIEKNETWELVDRPQGKDIIEVRWVYKTKLNSDGSIQKHKARLVAKGYSQQPGIDYNE 77
            I+ I+KN+TWEL   P G   I V+WVYK K NS G ++++KARLVAKGYSQ+ GIDY+E
Sbjct: 858  IKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDE 917

Query: 76   TFAPVARLDTIRAVIALAAQKKWRI 2
             FAPVARL+T+R +I+LAAQ KW+I
Sbjct: 918  IFAPVARLETVRLIISLAAQNKWKI 942



 Score =  113 bits (283), Expect(2) = 2e-51
 Identities = 81/238 (34%), Positives = 120/238 (50%), Gaps = 15/238 (6%)
 Frame = -3

Query: 914  VSERKNRTVMEMARSMLMEKGLPKTFWAEAVYTTVYLID-V*RKQFKTRHLLKHGVDRSR 738
            V+ERKNRT++EMARSML  K LPK  WAEAV   VYL++    K    +   +    R  
Sbjct: 630  VAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKP 689

Query: 737  QRNILEFFNLYAMCIFRQXXXXXXXXXXXERGIFLGYSSKSKGYRVYNIKTKKLVISPDV 558
              + L  F   A                  + IF+GY + SKGY++YN  TKK +IS ++
Sbjct: 690  GVSHLRVFGSIAHAHVPDEKRNKLDDKSE-KYIFIGYDNNSKGYKLYNPDTKKTIISRNI 748

Query: 557  EFDENATWNWKAEKIEKQ--ATISELQGEDAVALATTTQPGSLRSSPSTSRQEEATSESP 384
             FDE   W+W + + +        E + E       + +P +  +SP++S+ EE++SE  
Sbjct: 749  VFDEEGEWDWNSNEEDYNFFPHFEEDKPEPTREEPPSEEPTTPPTSPTSSQIEESSSERT 808

Query: 383  PRKTKSLSEIYETFN----------FSLMEPESFEDASRHEEWMKAMNEEITN--KND 246
            PR  +S+ E+YE             F+  EP  F++A   + W  AM+EEI +  KND
Sbjct: 809  PR-FRSIQELYEVTENQENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEEIKSIQKND 865


>emb|CAN74303.1| hypothetical protein VITISV_032980 [Vitis vinifera]
          Length = 1283

 Score =  256 bits (655), Expect = 2e-65
 Identities = 143/330 (43%), Positives = 185/330 (56%), Gaps = 7/330 (2%)
 Frame = -2

Query: 1656 KRGTRFIKYVLLVPSLEQNLLSVGQMMQNGYSLFFDGDSCSIYDKKNKNQEIARVKIERN 1477
            ++  + I  V  VP L+ NLLSV Q+ + GY +F     C I D+K     IA+V +  N
Sbjct: 343  EKSDQIISNVFFVPDLKTNLLSVXQLQEKGYEIFIKDGVCRIQDEKLGL--IAQVNMTTN 400

Query: 1476 RNFPIQWQYALQTSMKASI-DDSWLWHRRWRFGHFNFHGLQILHQKNMMRDFPSIQ*YEG 1300
            R FP+      Q      + D+ WLWH  +R+GH NF GL+ L QKNM+   P I     
Sbjct: 401  RMFPLYLDNTTQNCFSTKLMDEGWLWH--FRYGHLNFGGLKTLQQKNMVTGLPPIXTPSQ 458

Query: 1299 ACEGCLLGKQHGQPFHTGKAWRATKLLELVHKDICGPMRTPSLDQRRYFILFIDDYSIMT 1120
             CE C++GKQH   F  GK+WR  K+LELVH DICGP+   S   +RYFI FI DYS  T
Sbjct: 459  ICEECVVGKQHRYQFPKGKSWRXNKVLELVHSDICGPINPTSNGGKRYFITFIXDYSXKT 518

Query: 1119 WVYFLCEKSEVLSIFKKFKSFAEKQSGHSIKMLRSDRGKEYNSGEFDRFCEEEGVEHQLP 940
            WVYFL EKSE  S FK FK   EK++   IK+ RSD G EY S EF  FCE  G++ QL 
Sbjct: 519  WVYFLQEKSEAFSTFKSFKMLVEKEAXKPIKIFRSDXGGEYTSQEFVNFCENHGIQKQLT 578

Query: 939  VGYTPQ*NGV*KKESHSYGDGEIHADGERTSKDILGRSSLYNS------LLNRCLTKAV* 778
              Y+PQ NG   +++ +     ++      SK  + RS    +      +LNR  T  V 
Sbjct: 579  AAYSPQQNGXSXRKNRTI----LNMVRTILSKGHIPRSFWPEAVIWSIHILNRSPTLVVQ 634

Query: 777  DKTPIEAWSGQKPSAKHLRIFQSICHVHIP 688
            + TP EAW+G+KPS  H RIF  I + HIP
Sbjct: 635  NVTPXEAWNGRKPSVNHFRIFGCIAYAHIP 664



 Score =  113 bits (283), Expect(2) = 5e-42
 Identities = 54/85 (63%), Positives = 64/85 (75%)
 Frame = -1

Query: 256  IRMIEKNETWELVDRPQGKDIIEVRWVYKTKLNSDGSIQKHKARLVAKGYSQQPGIDYNE 77
            I  IE+N+TWEL + P+G   I V+WVYKTKL  +G + K+KARLVAKGY Q+ G+DY E
Sbjct: 802  IAAIERNDTWELSELPKGHKTIGVKWVYKTKLKENGEVDKYKARLVAKGYKQEFGVDYKE 861

Query: 76   TFAPVARLDTIRAVIALAAQKKWRI 2
             FAPVAR DTIR VIALAAQ  W I
Sbjct: 862  VFAPVARHDTIRLVIALAAQNSWPI 886



 Score = 86.7 bits (213), Expect(2) = 5e-42
 Identities = 67/231 (29%), Positives = 109/231 (47%), Gaps = 9/231 (3%)
 Frame = -3

Query: 911  SERKNRTVMEMARSMLMEKGLPKTFWAEAVYTTVYLIDV*RKQFKTRHLLKHGVDRSRQR 732
            S RKNRT++ M R++L +  +P++FW EAV  ++++++      ++  L+   V      
Sbjct: 589  SXRKNRTILNMVRTILSKGHIPRSFWPEAVIWSIHILN------RSPTLVVQNVTPXEAW 642

Query: 731  N----ILEFFNLYAMCIFRQXXXXXXXXXXXERG---IFLGYSSKSKGYRVYNIKTKKLV 573
            N     +  F ++  CI              ++G   IFLG S  SK Y++YN  TKK+ 
Sbjct: 643  NGRKPSVNHFRIFG-CIAYAHIPXQKRKKLDDKGEKCIFLGVSEXSKAYKLYNPITKKIX 701

Query: 572  ISPDVEFDENATWNWKAEKIEKQATISELQGEDAVALATTTQPGSLRSSPSTSRQEEATS 393
            IS D+ FDE + W W  +   KQ   ++  GE+        Q   +  +     +   T+
Sbjct: 702  ISRDIIFDEGSFWKWD-DNTTKQQIQABFDGENEEERQQPLQQ-QIPXAEIPPNEAPTTA 759

Query: 392  ESPPRKTKSLSEIYETFNFSLMEPESFEDASRHEEWMKAMNEEIT--NKND 246
            E+ P  T    E  E       +P +FE A +  +W KAM+ EI    +ND
Sbjct: 760  ETSP-TTPEFDEQVEAXVGXNCDPTTFESAVKESKWRKAMDAEIAAIERND 809


>emb|CAN71445.1| hypothetical protein VITISV_042489 [Vitis vinifera]
          Length = 1246

 Score =  254 bits (649), Expect = 8e-65
 Identities = 145/337 (43%), Positives = 186/337 (55%), Gaps = 7/337 (2%)
 Frame = -2

Query: 1677 RHHSSQDKRGTRFIKYVLLVPSLEQNLLSVGQMMQNGYSLFFDGDSCSIYDKKNKNQEIA 1498
            R HS +  +  + I  V  VP L+  LLSVGQ+ + GY +F     C I D+K     IA
Sbjct: 338  RIHSKE--KSDKIISNVFFVPDLKTTLLSVGQLQEKGYEIFIKDGVCRIQDEKLGL--IA 393

Query: 1497 RVKIERNRNFPIQWQYALQTSMKASI-DDSWLWHRRWRFGHFNFHGLQILHQKNMMRDFP 1321
            +V +  NR FP+      Q      + D+ WLWH  +R+GH NF  L+ L  KNM+   P
Sbjct: 394  QVNMTTNRMFPLYLDNTTQNCFSVKLMDEGWLWH--FRYGHLNFXXLKTLQXKNMVTGLP 451

Query: 1320 SIQ*YEGACEGCLLGKQHGQPFHTGKAWRATKLLELVHKDICGPMRTPSLDQRRYFILFI 1141
             IQ     CE C+ GKQH   F  GK+WR  K+LELVH DICGP+   S   +RYFI FI
Sbjct: 452  XIQTXSQICEECVXGKQHRYQFPKGKSWRXNKVLELVHSDICGPINPTSNGGKRYFITFI 511

Query: 1140 DDYSIMTWVYFLCEKSEVLSIFKKFKSFAEKQSGHSIKMLRSDRGKEYNSGEFDRFCEEE 961
             DYS  TWVYFL EKSE  S FK FK   EK++   IK+ RSD G EY S EF  FCE  
Sbjct: 512  XDYSWKTWVYFLQEKSEAFSTFKSFKMLVEKEAXKPIKIFRSDXGGEYTSQEFVNFCENH 571

Query: 960  GVEHQLPVGYTPQ*NGV*KKESHSYGDGEIHADGERTSKDILGRSSLYNS------LLNR 799
            G++ QL   Y+PQ NG  ++++ +     ++      SK  + RS    +      +LNR
Sbjct: 572  GIQKQLTAAYSPQQNGXSERKNXTI----LNMVXTILSKGHIPRSFWPEAVIWSIHILNR 627

Query: 798  CLTKAV*DKTPIEAWSGQKPSAKHLRIFQSICHVHIP 688
              T  V + TP EAW+G KPS  H RIF  I + HIP
Sbjct: 628  SPTLVVQNVTPEEAWNGXKPSVNHFRIFGCIAYAHIP 664



 Score =  109 bits (273), Expect(2) = 2e-40
 Identities = 52/82 (63%), Positives = 61/82 (74%)
 Frame = -1

Query: 247  IEKNETWELVDRPQGKDIIEVRWVYKTKLNSDGSIQKHKARLVAKGYSQQPGIDYNETFA 68
            IE+N+TWEL + P G   I V+WVYKTKL  +G + K+KA LVAKGY Q+ G+DY E FA
Sbjct: 839  IERNDTWELSELPXGHKTIGVKWVYKTKLKENGEVDKYKAXLVAKGYKQEFGVDYKEVFA 898

Query: 67   PVARLDTIRAVIALAAQKKWRI 2
            PVAR DTIR VIALAAQ  W I
Sbjct: 899  PVARHDTIRLVIALAAQNSWPI 920



 Score = 85.5 bits (210), Expect(2) = 2e-40
 Identities = 75/263 (28%), Positives = 118/263 (44%), Gaps = 41/263 (15%)
 Frame = -3

Query: 911  SERKNRTVMEMARSMLMEKGLPKTFWAEAVYTTVYLIDV*RKQFKTRHLLKHGVDRSRQR 732
            SERKN T++ M  ++L +  +P++FW EAV  ++++++      ++  L+   V      
Sbjct: 589  SERKNXTILNMVXTILSKGHIPRSFWPEAVIWSIHILN------RSPTLVVQNVTPEEAW 642

Query: 731  N----ILEFFNLYAMCIFRQXXXXXXXXXXXERG---IFLGYSSKSKGYRVYNIKTKKLV 573
            N     +  F ++  CI              ++G   IFLG S  SK Y++YN  TKK+V
Sbjct: 643  NGXKPSVNHFRIFG-CIAYAHIPDQKRNKLDDKGEKCIFLGVSEMSKAYKLYNPITKKIV 701

Query: 572  ISPDVEFDENATWNWKAEKIEKQATISELQGED-------------AVALATTTQPGSLR 432
            IS D+ FDE + W W  +   KQ   +   GE+             A  +     P +  
Sbjct: 702  ISHDIIFDEGSFWKWD-DNTTKQQIQANFDGENEEERQQPLQQRIPAAKIPPNEAPTTAE 760

Query: 431  SSPST---SRQEEAT---SESPPRKTKSLSEIYET----------FNFSLM---EPESFE 309
            +SP+T     Q EAT   S    RK  +    YE            +F+L    +P +FE
Sbjct: 761  TSPTTPEFDEQVEATVGSSSHRVRKRPAWMSDYEVTGIDQSEDPLTHFALFLDCDPTTFE 820

Query: 308  DASRHEEWMKAMNEEIT--NKND 246
             A +  +W KAM+ EI    +ND
Sbjct: 821  SAVKESKWRKAMDXEIVAIERND 843


>gb|ABA95820.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1142

 Score =  139 bits (350), Expect(2) = 3e-64
 Identities = 63/85 (74%), Positives = 77/85 (90%)
 Frame = -1

Query: 256 IRMIEKNETWELVDRPQGKDIIEVRWVYKTKLNSDGSIQKHKARLVAKGYSQQPGIDYNE 77
           I MIEKN TWELVDRP+ +++I V+WVYKTKLN DGS+QK+KARLVAKG+ Q+PGIDY E
Sbjct: 656 IHMIEKNNTWELVDRPRDREVIGVKWVYKTKLNLDGSVQKYKARLVAKGFKQKPGIDYYE 715

Query: 76  TFAPVARLDTIRAVIALAAQKKWRI 2
           T+APVARL+TIR +IALAAQK+W+I
Sbjct: 716 TYAPVARLETIRTIIALAAQKRWKI 740



 Score =  135 bits (339), Expect(2) = 3e-64
 Identities = 86/255 (33%), Positives = 137/255 (53%), Gaps = 37/255 (14%)
 Frame = -3

Query: 914  VSERKNRTVMEMARSMLMEKGLPKTFWAEAVYTTVYLIDV*RKQFKTRHLLKHGVDRSR- 738
            V+ERKNRT+ +MA SML +KG+PK+FWAEAV T +Y+++        R   K   +R+  
Sbjct: 410  VAERKNRTINDMANSMLQDKGMPKSFWAEAVNTAIYILN--------RSPTKAVPNRTPF 461

Query: 737  -----QRNILEFFNLYAMCIFRQXXXXXXXXXXXE--RGIFLGYSSKSKGYRVYNIKTKK 579
                 ++ ++    ++    + Q           +  R IF+GY+   KGYR+YN++ KK
Sbjct: 462  EAWYGKKPVIGHMRVFGCICYAQVPAQKRVKFDNKSDRCIFVGYADGIKGYRLYNLEKKK 521

Query: 578  LVISPDVEFDENATWNWKAEKIEKQATI---------SELQGEDAVALAT-TTQPGSLRS 429
            ++I  DV FDE+ATWNWK+ +      +           + G   V   T + QP S  S
Sbjct: 522  IIIIRDVIFDESATWNWKSPEASSTPLLPTTTITLGQPHMHGTHEVEDHTPSPQPSSPMS 581

Query: 428  SPS-------TSRQEEATSESPPRKTKSL------------SEIYETFNFSLMEPESFED 306
            S S       +S ++ +T ES PR+ +S+            SE +E  N+S++EP+SF++
Sbjct: 582  SSSASSDSSPSSEEQISTPESAPRRVRSMVELLESTSQQRGSEQHEFCNYSVVEPQSFQE 641

Query: 305  ASRHEEWMKAMNEEI 261
            A +H+ W+KAM +EI
Sbjct: 642  AEKHDNWIKAMEDEI 656



 Score =  188 bits (477), Expect = 7e-45
 Identities = 105/250 (42%), Positives = 143/250 (57%), Gaps = 9/250 (3%)
 Frame = -2

Query: 1410 WLWHRRWRF---GHFNFH----GLQILHQKNMMRDFPSIQ*YEGACEGCLLGKQHGQPFH 1252
            WL+  +W F   G ++       L++L  K M++  P I      CEGC+ GKQ    F 
Sbjct: 237  WLFLEKWLFQAEGRWSREKRKRALKLLRTKGMVQGLPFITLKSDPCEGCVFGKQIRASFP 296

Query: 1251 TGKAWRATKLLELVHKDICGPMRTPSLDQRRYFILFIDDYSIMTWVYFLCEKSEVLSIFK 1072
               AWRA+  LELVH DI G + T S     YFI FIDDY+ M WVYFL EKS  L IFK
Sbjct: 297  HSGAWRASAPLELVHTDIVGKVPTISEGGNWYFITFIDDYTRMIWVYFLKEKSAALEIFK 356

Query: 1071 KFKSFAEKQSGHSIKMLRSDRGKEYNSGEFDRFCEEEGVEHQLPVGYTPQ*NGV*KKESH 892
            KFK+  E QS   IK+LRSD+G EY S EF+++CE  G+  QL  GY+ Q NGV ++++ 
Sbjct: 357  KFKAMVENQSNRKIKVLRSDQGGEYISKEFEKYCENAGIRRQLTAGYSTQQNGVAERKNR 416

Query: 891  SYGDGEIHADGERTSKDILGRSSLYNS--LLNRCLTKAV*DKTPIEAWSGQKPSAKHLRI 718
            +  D       ++         ++  +  +LNR  TKAV ++TP EAW G+KP   H+R+
Sbjct: 417  TINDMANSMLQDKGMPKSFWAEAVNTAIYILNRSPTKAVPNRTPFEAWYGKKPVIGHMRV 476

Query: 717  FQSICHVHIP 688
            F  IC+  +P
Sbjct: 477  FGCICYAQVP 486


>gb|AAL75752.1|AC037197_10 Putative copia-type polyprotein [Oryza sativa Japonica Group]
            gi|31429795|gb|AAP51797.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1350

 Score =  138 bits (348), Expect(2) = 4e-64
 Identities = 63/85 (74%), Positives = 76/85 (89%)
 Frame = -1

Query: 256  IRMIEKNETWELVDRPQGKDIIEVRWVYKTKLNSDGSIQKHKARLVAKGYSQQPGIDYNE 77
            I MIEKN TWELVDRP+ + +I V+WVYKTKLN DGS+QK+KARLVAKG+ Q+PGIDY E
Sbjct: 789  IHMIEKNNTWELVDRPRDRKVIGVKWVYKTKLNPDGSVQKYKARLVAKGFKQKPGIDYYE 848

Query: 76   TFAPVARLDTIRAVIALAAQKKWRI 2
            T+APVARL+TIR +IALAAQK+W+I
Sbjct: 849  TYAPVARLETIRTIIALAAQKRWKI 873



 Score =  135 bits (340), Expect(2) = 4e-64
 Identities = 84/255 (32%), Positives = 138/255 (54%), Gaps = 37/255 (14%)
 Frame = -3

Query: 914  VSERKNRTVMEMARSMLMEKGLPKTFWAEAVYTTVYLIDV*RKQFKTRHLLKHGVDRSR- 738
            V+ERKNRT+ +MA SML +KG+PK+FWAEAV T +Y+++        R   K   +R+  
Sbjct: 543  VAERKNRTINDMANSMLQDKGMPKSFWAEAVNTAIYILN--------RSPTKAVPNRTPF 594

Query: 737  -----QRNILEFFNLYAMCIFRQXXXXXXXXXXXERG--IFLGYSSKSKGYRVYNIKTKK 579
                 ++ ++    ++    + Q           +    IF+GY+   KGYR+YN++ KK
Sbjct: 595  EAWYGKKPVIGHMRVFGCICYAQVPAQKRVKFDNKSDWCIFVGYADGIKGYRLYNLEKKK 654

Query: 578  LVISPDVEFDENATWNWKAEKIEKQATI---------SELQG----EDAVALATTTQPGS 438
            ++IS DV FDE+ATWNWK+ +      +           + G    ED  +   ++ P S
Sbjct: 655  IIISRDVIFDESATWNWKSPEASSTPLLPTTTITLGQPHMHGTHGVEDHTSSPQSSSPMS 714

Query: 437  LRSSPS----TSRQEEATSESPPRKTKSL------------SEIYETFNFSLMEPESFED 306
              S+ S    +S ++ +T ES PR+ +S+            SE +E  N+S++EP+SF++
Sbjct: 715  SSSASSDSSPSSEEQISTPESAPRRVRSMVELLESTSQQRGSEQHEFCNYSVVEPQSFQE 774

Query: 305  ASRHEEWMKAMNEEI 261
            A +H+ W+KAM +EI
Sbjct: 775  AEKHDNWIKAMEDEI 789



 Score =  234 bits (597), Expect = 9e-59
 Identities = 124/287 (43%), Positives = 174/287 (60%), Gaps = 2/287 (0%)
 Frame = -2

Query: 1542 SCSIYDKKNKNQEIARVKIERNRNFPIQWQYALQTSMKASIDDSWLWHRRWRFGHFNFHG 1363
            SC I D+KN N+ +A++ +E+NRNF ++  +  Q ++++ ID S LWH+R   GH N+  
Sbjct: 336  SCKILDRKN-NRLVAKINMEKNRNFLLRMNHPTQMALRSEIDISDLWHKR--MGHLNYRA 392

Query: 1362 LQILHQKNMMRDFPSIQ*YEGACEGCLLGKQHGQPFHTGKAWRATKLLELVHKDICGPMR 1183
            L++L  K M++  P I      CEGC+ GKQ    F    AWRA+  LELVH DI G + 
Sbjct: 393  LKLLRTKGMVQGLPFITLKSDPCEGCVFGKQIRASFPHSGAWRASAPLELVHTDIVGKVP 452

Query: 1182 TPSLDQRRYFILFIDDYSIMTWVYFLCEKSEVLSIFKKFKSFAEKQSGHSIKMLRSDRGK 1003
            T S     YFI FIDDY+ M WVYFL EKS  L IFKKFK+  E QS   IK+LRSD+G 
Sbjct: 453  TISEGGNWYFITFIDDYTRMIWVYFLKEKSAALEIFKKFKAMVENQSNRKIKVLRSDQGG 512

Query: 1002 EYNSGEFDRFCEEEGVEHQLPVGYTPQ*NGV*KKESHSYGDGEIHADGERTSKDILGRSS 823
            EY S EF+++CE  G+  QL  GY+ Q NGV ++++ +  D       ++         +
Sbjct: 513  EYISKEFEKYCENAGIRRQLTAGYSAQQNGVAERKNRTINDMANSMLQDKGMPKSFWAEA 572

Query: 822  LYNS--LLNRCLTKAV*DKTPIEAWSGQKPSAKHLRIFQSICHVHIP 688
            +  +  +LNR  TKAV ++TP EAW G+KP   H+R+F  IC+  +P
Sbjct: 573  VNTAIYILNRSPTKAVPNRTPFEAWYGKKPVIGHMRVFGCICYAQVP 619


>emb|CAN60366.1| hypothetical protein VITISV_031870 [Vitis vinifera]
          Length = 1274

 Score =  251 bits (642), Expect = 5e-64
 Identities = 139/321 (43%), Positives = 201/321 (62%), Gaps = 8/321 (2%)
 Frame = -2

Query: 1629 VLLVPSLEQNLLSVGQMMQNGYSLFFDGDSCSIYDKKNKNQEIARVKIERNRNFPIQWQY 1450
            V  +PSL QNLLSVGQ+M +GYS+ FDG +C I DKK+ +Q I  V++  N+ FP++   
Sbjct: 365  VYFIPSLTQNLLSVGQLMVSGYSILFDGATCVIKDKKS-DQIIVNVRMAANKLFPLEVSS 423

Query: 1449 ALQTSMKAS-IDDSWLWHRRWRFGHFNFHGLQILHQKNMMRDFPSIQ*YEGACEGCLLGK 1273
              + ++      +S LWH R  +GH N  GL++L +K M+   P I      CEGC+ GK
Sbjct: 424  IEKHALVVKETSESNLWHLR--YGHLNVKGLKLLSKKEMVFGLPKID-SVNVCEGCIYGK 480

Query: 1272 QHGQPFHTGKAWRATKLLELVHKDICGPMRTPSLDQRRYFILFIDDYSIMTWVYFLCEKS 1093
            Q  +PF  G++ RA+  LE++H D+CGPM+T S    RYF+LF DD+S M+WVYFL  K+
Sbjct: 481  QSKKPFPKGRSRRASSCLEIIHADLCGPMQTASFGGSRYFLLFTDDHSRMSWVYFLQSKA 540

Query: 1092 EVLSIFKKFKSFAEKQSGHSIKMLRSDRGKEYNSGEFDRFCEEEGVEHQLPVGYTPQ*NG 913
            E    FKKFK+F EKQSG  IK+LR+DRG E+ S +F  FCEEEG+  +L   Y+P+ NG
Sbjct: 541  ETFETFKKFKAFVEKQSGKCIKVLRTDRGGEFLSNDFKVFCEEEGLHRELTTPYSPEQNG 600

Query: 912  V*KKESHSYGDGEIHADGERTSKDILGR-------SSLYNSLLNRCLTKAV*DKTPIEAW 754
            V ++++ +  +    A     +K++          +++Y  LLN   TKAV ++TP EAW
Sbjct: 601  VAERKNRTVVE---MARSMMKAKNLSNHFWAEGVATAVY--LLNISPTKAVLNRTPYEAW 655

Query: 753  SGQKPSAKHLRIFQSICHVHI 691
             G+KP   HL++F S+ +  I
Sbjct: 656  YGRKPWVSHLKVFGSVAYTLI 676



 Score =  129 bits (323), Expect(2) = 4e-52
 Identities = 84/229 (36%), Positives = 122/229 (53%), Gaps = 11/229 (4%)
 Frame = -3

Query: 914  VSERKNRTVMEMARSMLMEKGLPKTFWAEAVYTTVYLIDV*-RKQFKTRHLLKHGVDRSR 738
            V+ERKNRTV+EMARSM+  K L   FWAE V T VYL+++   K    R   +    R  
Sbjct: 601  VAERKNRTVVEMARSMMKAKNLSNHFWAEGVATAVYLLNISPTKAVLNRTPYEAWYGRKP 660

Query: 737  QRNILEFFNLYAMCIFRQXXXXXXXXXXXERGIFLGYSSKSKGYRVYNIKTKKLVISPDV 558
              + L+ F   A  +               + IF+GY S+SKGY++YN  + K+++S +V
Sbjct: 661  WVSHLKVFGSVAYTLI-DSHNHSNLDEKSIKCIFIGYCSQSKGYKLYNPVSGKIIVSRNV 719

Query: 557  EFDENATWNWKAEK----IEKQATISELQGED---AVALATTTQPGSLRSSP--STSRQE 405
              DE A+W W+  +    +E  +     Q ED   +V +     P    SSP  S+S   
Sbjct: 720  VXDEKASWTWRVSEDGALVEISSESEVAQSEDQQPSVQIPAXPTPSHSPSSPNLSSSSSS 779

Query: 404  EATSESPPRKTKSLSEIYETFN-FSLMEPESFEDASRHEEWMKAMNEEI 261
            +++ E+PPRK +SL +IYET     + +P +FE+A   EEW  AM EEI
Sbjct: 780  QSSEETPPRKFRSLRDIYETTQVLFVADPTTFEEAVEKEEWCSAMKEEI 828



 Score =  105 bits (261), Expect(2) = 4e-52
 Identities = 46/67 (68%), Positives = 60/67 (89%)
 Frame = -1

Query: 247  IEKNETWELVDRPQGKDIIEVRWVYKTKLNSDGSIQKHKARLVAKGYSQQPGIDYNETFA 68
            IEKNETWELV+ P+ K++I V+WV++TK  +DGSIQKHKARLVAKGY+QQ G+DY++TF+
Sbjct: 831  IEKNETWELVELPEDKNVIGVKWVFRTKYLADGSIQKHKARLVAKGYAQQHGVDYDDTFS 890

Query: 67   PVARLDT 47
            PVAR +T
Sbjct: 891  PVARFET 897


>emb|CAN80930.1| hypothetical protein VITISV_005279 [Vitis vinifera]
          Length = 1291

 Score =  237 bits (604), Expect(2) = 5e-64
 Identities = 138/326 (42%), Positives = 187/326 (57%), Gaps = 2/326 (0%)
 Frame = -2

Query: 1656 KRGTRFIKYVLLVPSLEQNLLSVGQMMQNGYSLFFDGDSCSIYDKKNKNQEIARVKIERN 1477
            K+GT+    VL +P L+QNLLSV QM++NGY++ F  + C I D      EIA++K+  N
Sbjct: 379  KKGTKIXTNVLYIPDLDQNLLSVAQMLRNGYAISFKENFCFISDVHGT--EIAKIKMNGN 436

Query: 1476 RNFPIQWQYALQTSMKASIDDSWLWHRRWRFGHFNFHGLQILHQKNMMRDFPSIQ*YEGA 1297
             +F ++          A ID+S +WH+R  +GHFN   L+ + +  M+ D P I      
Sbjct: 437  -SFYLKLDLVEGHVFSAKIDESVVWHKR--YGHFNLKSLRFMQEAGMVEDMPEISVNAQT 493

Query: 1296 CEGCLLGKQHGQPFHTGKAWRATKLLELVHKDICGPMRTPSLDQRRYFILFIDDYSIMTW 1117
            CE C LGKQ  QPF    + RAT  LEL+H DICGPM T SL    YF LFIDD+S MTW
Sbjct: 494  CESCELGKQQRQPFPQNMSKRATHKLELIHSDICGPMSTTSLSNNVYFALFIDDFSRMTW 553

Query: 1116 VYFLCEKSEVLSIFKKFKSFAEKQSGHSIKMLRSDRGKEYNSGEFDRFCEEEGVEHQLPV 937
            VYFL  KS+VLS+FK FK   E QSG ++K            G  +   E       L  
Sbjct: 554  VYFLKTKSQVLSMFKSFKKMVETQSGQNVK------------GASELIME-------LTT 594

Query: 936  GYTPQ*NGV*KKESHSYGDGEIHADGERTSKDILGRSSLYNS--LLNRCLTKAV*DKTPI 763
             Y+PQ NGV ++++ +  +       E+    +L   ++  S  LLNR  TK+V  KTPI
Sbjct: 595  PYSPQQNGVSERKNRTVMEMARCMLFEKKLPKLLWAEAVNTSVYLLNRLPTKSVQSKTPI 654

Query: 762  EAWSGQKPSAKHLRIFQSICHVHIPT 685
            EAWSG KPS KHL++F S C++H+P+
Sbjct: 655  EAWSGVKPSVKHLKVFGSFCYLHVPS 680



 Score = 36.6 bits (83), Expect(2) = 5e-64
 Identities = 15/28 (53%), Positives = 23/28 (82%)
 Frame = -3

Query: 1733 SVKSQVKMGNGALVETKDKGTIAVKTRE 1650
            SV+ +VK+GNG +V+ K KGTIA+ T++
Sbjct: 353  SVQPKVKLGNGEVVQAKGKGTIAISTKK 380



 Score =  139 bits (351), Expect(2) = 5e-57
 Identities = 93/223 (41%), Positives = 126/223 (56%), Gaps = 5/223 (2%)
 Frame = -3

Query: 914  VSERKNRTVMEMARSMLMEKGLPKTFWAEAVYTTVYLID---V*RKQFKTRHLLKHGVDR 744
            VSERKNRTVMEMAR ML EK LPK  WAEAV T+VYL++       Q KT      GV  
Sbjct: 603  VSERKNRTVMEMARCMLFEKKLPKLLWAEAVNTSVYLLNRLPTKSVQSKTPIEAWSGVKP 662

Query: 743  SRQRNILEFFNLYAMCIFRQXXXXXXXXXXXERGIFLGYSSKSKGYRVYNIKTKKLVISP 564
            S +   L+ F  +   +              E+G+F+GY+++SKGYR+Y++   K+VIS 
Sbjct: 663  SVKH--LKVFGSFCY-LHVPSVKRGKLDERAEKGVFVGYAAESKGYRIYSLSRMKIVISR 719

Query: 563  DVEFDENATWNWKAEKIEK--QATISELQGEDAVALATTTQPGSLRSSPSTSRQEEATSE 390
            DV FDEN+ WNW  +K+ K  Q T S L+     A+ +T   G L          EATS+
Sbjct: 720  DVHFDENSYWNWDLKKVHKCDQTTPSILE----PAIESTIIEGPL--------DVEATSD 767

Query: 389  SPPRKTKSLSEIYETFNFSLMEPESFEDASRHEEWMKAMNEEI 261
            +P  K + LS++YE  N    EP  + +A+R  EW++AM  EI
Sbjct: 768  TPVLKMRPLSDVYERCNLVHAEPTCYTEAARFLEWIEAMKAEI 810



 Score =  110 bits (276), Expect(2) = 5e-57
 Identities = 49/85 (57%), Positives = 67/85 (78%)
 Frame = -1

Query: 256  IRMIEKNETWELVDRPQGKDIIEVRWVYKTKLNSDGSIQKHKARLVAKGYSQQPGIDYNE 77
            I  IE+N TW+L + P+ K+ I V+WV++TK NSDGSI +HKARLV KG++Q  G+DY +
Sbjct: 810  IDAIERNGTWKLTELPEAKNAIGVKWVFRTKFNSDGSIFRHKARLVVKGFAQVAGVDYGD 869

Query: 76   TFAPVARLDTIRAVIALAAQKKWRI 2
            TFAPVAR DTIR ++ALA Q+ W++
Sbjct: 870  TFAPVARHDTIRLLLALAGQRGWKV 894


>emb|CAN71037.1| hypothetical protein VITISV_011061 [Vitis vinifera]
          Length = 1220

 Score =  236 bits (603), Expect(2) = 9e-64
 Identities = 139/326 (42%), Positives = 189/326 (57%), Gaps = 2/326 (0%)
 Frame = -2

Query: 1656 KRGTRFIKYVLLVPSLEQNLLSVGQMMQNGYSLFFDGDSCSIYDKKNKNQEIARVKIERN 1477
            KRGT+ +  VL +P L+QNLLSV QM++NGY++ F  + C I + + K  EIA++K+  N
Sbjct: 355  KRGTKIVTNVLYIPDLDQNLLSVAQMLRNGYAVSFKENFCFITNVQEK--EIAKIKMNGN 412

Query: 1476 RNFPIQWQYALQTSMKASIDDSWLWHRRWRFGHFNFHGLQILHQKNMMRDFPSIQ*YEGA 1297
              F ++          A ID+S +WH+   +GHFN   L+ + +  M+ D   I      
Sbjct: 413  I-FYLKLDLVEGHVFSAKIDESVVWHKS--YGHFNLKSLRFMQEAGMVEDMLEISVNAQT 469

Query: 1296 CEGCLLGKQHGQPFHTGKAWRATKLLELVHKDICGPMRTPSLDQRRYFILFIDDYSIMTW 1117
            CE C LGKQ  QPF    + RAT  LEL+H  ICGPM   SL    YF LFIDD S MTW
Sbjct: 470  CESCELGKQQRQPFPQNMSKRATHELELIHSYICGPMSIASLSNNVYFALFIDDLSRMTW 529

Query: 1116 VYFLCEKSEVLSIFKKFKSFAEKQSGHSIKMLRSDRGKEYNSGEFDRFCEEEGVEHQLPV 937
            VYFL  KS+VLS+FK FK   E QSG ++K+L  D G EY S EF+           L  
Sbjct: 530  VYFLKTKSQVLSMFKSFKKMVETQSGQNVKVLIIDNGGEYISKEFN-----------LTA 578

Query: 936  GYTPQ*NGV*KKESHSYGDGEIHADGERTSKDILGRSSLYNS--LLNRCLTKAV*DKTPI 763
             Y PQ N V ++++ +  +       E+    +L   ++  S  LLNR  TK+V  KTPI
Sbjct: 579  PYLPQQNEVSERKNKTVMEMARCMLFEKRLPKLLWAEAVNTSVYLLNRLPTKSVQSKTPI 638

Query: 762  EAWSGQKPSAKHLRIFQSICHVHIPT 685
            EAW G KPS KHL++F S+C++H+P+
Sbjct: 639  EAWFGVKPSVKHLKVFGSLCYLHVPS 664



 Score = 36.2 bits (82), Expect(2) = 9e-64
 Identities = 15/27 (55%), Positives = 22/27 (81%)
 Frame = -3

Query: 1733 SVKSQVKMGNGALVETKDKGTIAVKTR 1653
            SV+ +VK+GNG +V+ K KGTIA+ T+
Sbjct: 329  SVQPKVKLGNGEVVQAKGKGTIAISTK 355



 Score =  137 bits (344), Expect(2) = 1e-53
 Identities = 93/224 (41%), Positives = 126/224 (56%), Gaps = 6/224 (2%)
 Frame = -3

Query: 914  VSERKNRTVMEMARSMLMEKGLPKTFWAEAVYTTVYLID---V*RKQFKTRHLLKHGVDR 744
            VSERKN+TVMEMAR ML EK LPK  WAEAV T+VYL++       Q KT      GV  
Sbjct: 587  VSERKNKTVMEMARCMLFEKRLPKLLWAEAVNTSVYLLNRLPTKSVQSKTPIEAWFGVKP 646

Query: 743  SRQRNILEFFNLYAMCIFR-QXXXXXXXXXXXERGIFLGYSSKSKGYRVYNIKTKKLVIS 567
            S +   L+ F   ++C                E+G+F+GY+++SKGYR+Y++   K+VIS
Sbjct: 647  SVKH--LKVFG--SLCYLHVPSVKRGKLDERAEKGVFVGYAAESKGYRIYSLSRMKIVIS 702

Query: 566  PDVEFDENATWNWKAEKIEK--QATISELQGEDAVALATTTQPGSLRSSPSTSRQEEATS 393
             DV FDEN+ WNW  +K+ K  Q T S L+     A+ +    G L          EATS
Sbjct: 703  RDVHFDENSYWNWDLKKVHKCDQNTPSILE----PAIESIIIEGPL--------DVEATS 750

Query: 392  ESPPRKTKSLSEIYETFNFSLMEPESFEDASRHEEWMKAMNEEI 261
            ++P  K + LS++YE  N    EP  + +A+R  EW+KAM  EI
Sbjct: 751  DTPMLKMRPLSDVYERCNLVHAEPTCYTEAARFLEWIKAMKAEI 794



 Score =  102 bits (253), Expect(2) = 1e-53
 Identities = 46/85 (54%), Positives = 65/85 (76%)
 Frame = -1

Query: 256  IRMIEKNETWELVDRPQGKDIIEVRWVYKTKLNSDGSIQKHKARLVAKGYSQQPGIDYNE 77
            I  IE+N TW+L + P+ K+ I V+WV++TK NSDGSI +HKARLV KG++Q   +DY +
Sbjct: 794  IDAIERNGTWKLTELPEAKNAIGVKWVFRTKFNSDGSIFRHKARLVVKGFAQVARVDYGD 853

Query: 76   TFAPVARLDTIRAVIALAAQKKWRI 2
            TFA VA+ DTIR ++ALA+Q  W++
Sbjct: 854  TFALVAKHDTIRLLLALASQMGWKV 878


>emb|CAN72676.1| hypothetical protein VITISV_020406 [Vitis vinifera]
          Length = 1183

 Score =  248 bits (633), Expect(2) = 9e-64
 Identities = 138/321 (42%), Positives = 201/321 (62%), Gaps = 8/321 (2%)
 Frame = -2

Query: 1629 VLLVPSLEQNLLSVGQMMQNGYSLFFDGDSCSIYDKKNKNQEIARVKIERNRNFPIQWQY 1450
            V  +PSL QNLLSVGQ+M +GYS+ FDG +C I DKK+ +Q I  V++  N+ FP++   
Sbjct: 299  VYFIPSLTQNLLSVGQLMVSGYSILFDGATCVIKDKKS-DQIIFDVRMAANKLFPLEVSS 357

Query: 1449 ALQTSMKAS-IDDSWLWHRRWRFGHFNFHGLQILHQKNMMRDFPSIQ*YEGACEGCLLGK 1273
              + ++      +S LWH R  +GH N  GL++L +K M+   P I      CEGC+ GK
Sbjct: 358  IEKHALVVKETSESNLWHLR--YGHLNVKGLKLLSKKEMVFGLPKID-SVNVCEGCIYGK 414

Query: 1272 QHGQPFHTGKAWRATKLLELVHKDICGPMRTPSLDQRRYFILFIDDYSIMTWVYFLCEKS 1093
            Q  +PF  G++ RA+  LE++H D+CGPM+T S    RYF+LF +D+S M+WVYFL  K+
Sbjct: 415  QSKKPFPKGRSRRASSCLEIIHADLCGPMQTASFGGSRYFLLFTNDHSRMSWVYFLQSKA 474

Query: 1092 EVLSIFKKFKSFAEKQSGHSIKMLRSDRGKEYNSGEFDRFCEEEGVEHQLPVGYTPQ*NG 913
            E    FKKFK+F EKQSG  IK+LR+DRG E+ S +F  FCEEEG+  +L   Y+P+ NG
Sbjct: 475  ETFETFKKFKAFVEKQSGKCIKVLRTDRGGEFLSNDFKVFCEEEGLHRELTTPYSPEQNG 534

Query: 912  V*KKESHSYGDGEIHADGERTSKDILGR-------SSLYNSLLNRCLTKAV*DKTPIEAW 754
            V ++++ +  +    A     +K++          +++Y  LLN   TKAV ++TP EAW
Sbjct: 535  VAERKNRTVVE---MARSMMKAKNLSNHFWAEGVATAVY--LLNISPTKAVLNRTPYEAW 589

Query: 753  SGQKPSAKHLRIFQSICHVHI 691
             G+KP   HL++F S+ +  I
Sbjct: 590  YGKKPWVSHLKVFGSVAYTLI 610



 Score = 24.6 bits (52), Expect(2) = 9e-64
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 1733 SVKSQVKMGNGALVETKDKGTIAV 1662
            S K +VK+G+   V+ + KGT+AV
Sbjct: 263  SHKLKVKLGDDKQVQVEGKGTVAV 286



 Score =  132 bits (331), Expect(2) = 2e-35
 Identities = 84/229 (36%), Positives = 125/229 (54%), Gaps = 11/229 (4%)
 Frame = -3

Query: 914  VSERKNRTVMEMARSMLMEKGLPKTFWAEAVYTTVYLIDV*-RKQFKTRHLLKHGVDRSR 738
            V+ERKNRTV+EMARSM+  K L   FWAE V T VYL+++   K    R   +    +  
Sbjct: 535  VAERKNRTVVEMARSMMKAKNLSNHFWAEGVATAVYLLNISPTKAVLNRTPYEAWYGKKP 594

Query: 737  QRNILEFFNLYAMCIFRQXXXXXXXXXXXERGIFLGYSSKSKGYRVYNIKTKKLVISPDV 558
              + L+ F   A  +  +            + IF+GY S+SKGY++YN  + K+++S +V
Sbjct: 595  WVSHLKVFGSVAYTLI-ESHNRSKLDEKSVKCIFIGYCSQSKGYKLYNPVSGKIIVSRNV 653

Query: 557  EFDENATWNWKAEK----IEKQATISELQGED---AVALATTTQPGSLRSSP--STSRQE 405
             FDE A+W W+  +    +E  +     Q ED   +V +  +  P    SSP  S+S   
Sbjct: 654  VFDEKASWTWRVSEDGALVEISSESEVAQSEDQQPSVQIPASPTPSHSPSSPNLSSSSSS 713

Query: 404  EATSESPPRKTKSLSEIYETFN-FSLMEPESFEDASRHEEWMKAMNEEI 261
            +++ E+PPRK +SL +IYET     + +P +FE+A   EEW  AM EEI
Sbjct: 714  QSSEETPPRKFRSLRDIYETTQVLFVADPTTFEEAVEKEEWXSAMKEEI 762



 Score = 46.2 bits (108), Expect(2) = 2e-35
 Identities = 24/54 (44%), Positives = 32/54 (59%)
 Frame = -1

Query: 256 IRMIEKNETWELVDRPQGKDIIEVRWVYKTKLNSDGSIQKHKARLVAKGYSQQP 95
           I  IEKNETWELV+ P+ K++I V+WV+ T   +D         LV + Y  QP
Sbjct: 762 IAAIEKNETWELVELPEDKNVIGVKWVFXTXYLAD--------ELVEEVYVSQP 807


>gb|ABW74566.1| integrase [Boechera divaricarpa]
          Length = 1165

 Score =  249 bits (637), Expect = 2e-63
 Identities = 135/318 (42%), Positives = 198/318 (62%), Gaps = 3/318 (0%)
 Frame = -2

Query: 1644 RFIKYVLLVPSLEQNLLSVGQMMQNGYSLFFDGDSCSIYDKKNKNQEIARVKIERNRNFP 1465
            + I  V  +P L  NLLSVGQM++N  S+ FDG+ C I +KK+    +A VK   N  +P
Sbjct: 201  KLIYGVYYIPDLAHNLLSVGQMVENNCSVLFDGNECVIKEKKS-GVTLAMVKKTSNNLYP 259

Query: 1464 IQWQYALQTSMKASIDD-SWLWHRRWRFGHFNFHGLQILHQKNMMRDFPSIQ*YEGACEG 1288
            ++       ++ A + D S L H R  +GH + +GL++L+QK+M+   P I   +  CEG
Sbjct: 260  LEMSSVETKALVAKVSDISKLLHLR--YGHLHENGLRVLNQKDMVIGLPKIGALK-LCEG 316

Query: 1287 CLLGKQHGQPFHTGKAWRATKLLELVHKDICGPMRTPSLDQRRYFILFIDDYSIMTWVYF 1108
            C+ GKQ  + F  G+A RAT+ LE+VH D+CGPM+T SL   +YF++  DDYS M+WVYF
Sbjct: 317  CVYGKQSRRSFPVGRARRATQYLEIVHADLCGPMQTASLGGSKYFLMLTDDYSRMSWVYF 376

Query: 1107 LCEKSEVLSIFKKFKSFAEKQSGHSIKMLRSDRGKEYNSGEFDRFCEEEGVEHQLPVGYT 928
            L  K E   +FK FK+  EKQS   +K+LR+DRG E+ S +F++FCE+EG+ H+L   YT
Sbjct: 377  LKSKGEAFDMFKNFKALVEKQSEQQVKVLRTDRGGEFTSTKFNQFCEKEGIHHELTTAYT 436

Query: 927  PQ*NGV*KKESHSYGDGEIHADGERTSKDILGRSSLYNS--LLNRCLTKAV*DKTPIEAW 754
            P+ NGV ++++ +  +       ER   +     S+  +  LLN   TKAV ++TP EAW
Sbjct: 437  PEQNGVAERKNTTVVEMARSMLKERNLPNQFWAESVRTAVYLLNISPTKAVLNRTPYEAW 496

Query: 753  SGQKPSAKHLRIFQSICH 700
             G+KP   HLR+F S+C+
Sbjct: 497  CGRKPGVSHLRVFGSVCY 514



 Score =  126 bits (317), Expect(2) = 7e-52
 Identities = 89/232 (38%), Positives = 120/232 (51%), Gaps = 12/232 (5%)
 Frame = -3

Query: 914  VSERKNRTVMEMARSMLMEKGLPKTFWAEAVYTTVYLIDV*-RKQFKTRHLLKHGVDRSR 738
            V+ERKN TV+EMARSML E+ LP  FWAE+V T VYL+++   K    R   +    R  
Sbjct: 442  VAERKNTTVVEMARSMLKERNLPNQFWAESVRTAVYLLNISPTKAVLNRTPYEAWCGRKP 501

Query: 737  QRNILEFFNLYAMCIFRQXXXXXXXXXXXERGIFLGYSSKSKGYRVYNIKTKKLVISPDV 558
              + L  F      +              E+ IFLGY S+SKGYR+YN  + K+V S +V
Sbjct: 502  GVSHLRVFGSVCYSLI-DAHNRKKLDEKSEKCIFLGYCSQSKGYRLYNPVSGKIVESRNV 560

Query: 557  EFDENATWNWK----AEKIEKQATISELQGEDAVALATTTQPGSLRSSP------STSRQ 408
             FDE A W W+     E +E      + +       AT T   S  SSP       +S  
Sbjct: 561  TFDEEAVWTWREGDNGELVEIFVNDEQEENPSPANSATNTPASSAPSSPGPNNGNGSSDG 620

Query: 407  EEATSESPPRKTKSLSEIYETFN-FSLMEPESFEDASRHEEWMKAMNEEITN 255
            E ++S SPP+K +SL EIYE  + F   +P +  +A+  EEW KAM EEI +
Sbjct: 621  EGSSSISPPQKFRSLREIYEEQHAFFSADPVTVNEAATKEEWRKAMEEEIAS 672



 Score =  106 bits (265), Expect(2) = 7e-52
 Identities = 48/85 (56%), Positives = 65/85 (76%)
 Frame = -1

Query: 256 IRMIEKNETWELVDRPQGKDIIEVRWVYKTKLNSDGSIQKHKARLVAKGYSQQPGIDYNE 77
           I  IEKN+TW+LV+ P+ K  I V+WV+KTK  +D +IQK+KARLV KGY+Q+ G+DY +
Sbjct: 670 IASIEKNQTWQLVELPEEKHSIGVKWVFKTKYQADDNIQKYKARLVVKGYAQEYGVDYEK 729

Query: 76  TFAPVARLDTIRAVIALAAQKKWRI 2
           TF+PVAR DT+R ++AL A   W I
Sbjct: 730 TFSPVARFDTLRTLLALGAYMHWPI 754