BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Stemona21_contig00019406
         (1170 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAD35511.1| putative RNA polymerase A(I) large subunit [Oryz...   325   2e-86
ref|XP_004967186.1| PREDICTED: DNA-directed RNA polymerase I sub...   316   1e-83
tpg|DAA45225.1| TPA: putative DNA-directed RNA polymerase family...   305   2e-80
ref|XP_006656244.1| PREDICTED: DNA-directed RNA polymerase I sub...   305   2e-80
ref|XP_002440175.1| hypothetical protein SORBIDRAFT_09g027230 [S...   281   3e-73
ref|NP_001058063.2| Os06g0612200 [Oryza sativa Japonica Group] g...   280   6e-73
ref|XP_003559192.1| PREDICTED: DNA-directed RNA polymerase I sub...   280   1e-72
gb|EXC04356.1| DNA-directed RNA polymerase I subunit rpa1 [Morus...   271   5e-70
gb|EMS52925.1| DNA-directed RNA polymerase I subunit rpa1 [Triti...   270   6e-70
emb|CBI29879.3| unnamed protein product [Vitis vinifera]              268   2e-69
ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub...   268   2e-69
ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I sub...   267   7e-69
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...   267   7e-69
ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I sub...   264   6e-68
gb|EOY09358.1| Nuclear RNA polymerase A1 isoform 4 [Theobroma ca...   263   8e-68
gb|EOY09357.1| Nuclear RNA polymerase A1 isoform 3 [Theobroma ca...   263   8e-68
gb|EOY09356.1| Nuclear RNA polymerase A1, putative isoform 2 [Th...   263   8e-68
ref|XP_006381018.1| hypothetical protein POPTR_0006s05420g [Popu...   256   1e-65
ref|XP_002308050.1| predicted protein [Populus trichocarpa]           256   1e-65
ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I sub...   254   4e-65

>dbj|BAD35511.1| putative RNA polymerase A(I) large subunit [Oryza sativa Japonica
            Group]
          Length = 1748

 Score =  325 bits (833), Expect = 2e-86
 Identities = 194/383 (50%), Positives = 244/383 (63%), Gaps = 8/383 (2%)
 Frame = -1

Query: 1170 EALDNAIAKHLEMISKIRGIGFVTTENNFAEDGDEDEXXXXXXXXXXXXXXXXXXXXXXX 991
            +A+D AI+KHL+++ KI  I  V + +  ++  D  E                       
Sbjct: 1369 DAMDLAISKHLDLLHKINEIQAVKSNDMESQRSDGVEESENGPTDEDNGVSDGENEDDL- 1427

Query: 990  XXDQGADAEKRKRQVSDEMEYDEDVQKETPAMTDMHDGEP-QSGLESENDQVEPDEDYTV 814
                GADAEK KRQ  DEMEYD+D +KE     D    E  +S  ESE+ Q + DE+   
Sbjct: 1428 ----GADAEKWKRQEIDEMEYDDDAEKEEGFDMDSESEEDTKSKPESEDHQAKLDEELEE 1483

Query: 813  GGEDPIVEPEVENPESASKFDPALTSVDDMEEEKSQAKNMTVKGRKKKINRVFNPHFEK- 637
              E  +++   +     +K   A    D+M E + +   +T+K +K   N  +  H+E  
Sbjct: 1484 SEEGHVLDSSNKGENLKAKQATARLE-DEMNEAEDEKAQVTIKFKK---NIKWTIHYEST 1539

Query: 636  -LRFEVEIILRKEPHILLVEIAQQTAKKVFVKTIDSIERCSVVEPKK---NT--DPIMLQ 475
             L FEV   L+++PHILL +IAQ+TA+ VFVK   +I+RC V +PKK   NT   PI LQ
Sbjct: 1540 GLNFEVHYALQEQPHILLAQIAQRTARSVFVKACKNIDRCEVNKPKKIDNNTINTPITLQ 1599

Query: 474  TAGVNFLTFWKLEEYLDINKVVTNDIYAMLNTYGVEAARATIINEVKAVFEAYGIRVNMR 295
            TAGVNF  F KL +YLDIN+V +NDI+AMLNTYGVEAARATII EVK VF AYGI V+MR
Sbjct: 1600 TAGVNFEVFHKLVDYLDINEVRSNDIHAMLNTYGVEAARATIIGEVKGVFGAYGIHVDMR 1659

Query: 294  HLTLIADFMTLQGGYRPMNRLGMEHFGTSPFGKMTFETATRFIIEAANHGEVDTLECPSA 115
            HL LIADFMT  GGYRPM+RLGM  F TSPFGKMTFETAT+FI+EAA+HGE DTL+ PSA
Sbjct: 1660 HLNLIADFMTFDGGYRPMSRLGMGQFSTSPFGKMTFETATKFIVEAASHGESDTLDGPSA 1719

Query: 114  SVCLGQPVKMGTGCFDLLQNLHL 46
            SVCLG+PVK+GTG F LLQN  L
Sbjct: 1720 SVCLGKPVKVGTGSFGLLQNFSL 1742


>ref|XP_004967186.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Setaria
            italica]
          Length = 1682

 Score =  316 bits (809), Expect = 1e-83
 Identities = 183/404 (45%), Positives = 237/404 (58%), Gaps = 29/404 (7%)
 Frame = -1

Query: 1170 EALDNAIAKHLEMISKIRGIGFVTT---ENNFAEDGDEDEXXXXXXXXXXXXXXXXXXXX 1000
            +A+++AI KHL+++ KI  I  V     E + ++ G+E E                    
Sbjct: 1289 DAMEHAIEKHLDLLHKINEIRAVKVNDAEGSLSDGGEESESRHGDGEETGMSDGDDENDN 1348

Query: 999  XXXXXDQGADAEKRKRQVSDEMEYDEDVQKETPAMTDMHDGEPQSGLESENDQVEPDEDY 820
                   G DAEKRKRQ  DEMEYD+D + E   M    + E +   +SE D  E  +D 
Sbjct: 1349 DDDL---GTDAEKRKRQERDEMEYDDDTENEE-GMDSESEEETKVKHQSEEDPAESGDDL 1404

Query: 819  TVGGEDPIVEPEVENPESASKFDPALTSVDDM-----EEEKSQAKNMTVK---------- 685
                       E +     SK D  +TSVDDM     + +KS+ K+ T K          
Sbjct: 1405 Q----------EADEEHKTSKSD--MTSVDDMSYSAKKVKKSKDKHETAKLQERTHTEGK 1452

Query: 684  -----------GRKKKINRVFNPHFEKLRFEVEIILRKEPHILLVEIAQQTAKKVFVKTI 538
                        RKKK+ R  +   + L FE+      EPHILL +IAQ+TA+ +FV+  
Sbjct: 1453 SDERKQDQMTYKRKKKLKRTVHVESKDLDFEIHYAFCDEPHILLAQIAQKTARSIFVRAC 1512

Query: 537  DSIERCSVVEPKKNTDPIMLQTAGVNFLTFWKLEEYLDINKVVTNDIYAMLNTYGVEAAR 358
             +I++C V E K+     +L+T+GVNF  FW L +Y+ INK+ TNDI+AML TYGVEAAR
Sbjct: 1513 KNIDKCEVEEKKEKGSSAVLKTSGVNFEVFWNLRKYISINKITTNDIHAMLKTYGVEAAR 1572

Query: 357  ATIINEVKAVFEAYGIRVNMRHLTLIADFMTLQGGYRPMNRLGMEHFGTSPFGKMTFETA 178
            ATII EV  VF  YGI+V+ RHL++IADFMT  GGYRPMNRLGM  F TSPFGKMTFETA
Sbjct: 1573 ATIIEEVNHVFGVYGIKVDPRHLSMIADFMTFDGGYRPMNRLGMGQFSTSPFGKMTFETA 1632

Query: 177  TRFIIEAANHGEVDTLECPSASVCLGQPVKMGTGCFDLLQNLHL 46
            T+FI++AA HGE D+LECPSAS+CLG+P K+GTG F LLQNL L
Sbjct: 1633 TKFIVDAATHGESDSLECPSASICLGKPAKVGTGTFGLLQNLAL 1676


>tpg|DAA45225.1| TPA: putative DNA-directed RNA polymerase family protein [Zea mays]
          Length = 382

 Score =  305 bits (782), Expect = 2e-80
 Identities = 172/384 (44%), Positives = 225/384 (58%), Gaps = 11/384 (2%)
 Frame = -1

Query: 1164 LDNAIAKHLEMISKIRGIGFVTTENNFAEDGDEDEXXXXXXXXXXXXXXXXXXXXXXXXX 985
            +++AI KHL+++ KI  I  V  E+      + DE                         
Sbjct: 1    MEHAIEKHLDLLYKINEIRAVKIEDTEGSLLNGDEESQSRHADGGDTGTSDDDDQNDNDV 60

Query: 984  DQGADAEKRKRQVSDEMEYDEDVQKETPAMTDMHDGEPQSGLESENDQVEPDEDYTVGGE 805
            D G DAEK KRQ  DEMEYD+D + E    ++  + + +   ES +D  E D+++T+   
Sbjct: 61   DLGTDAEKMKRQEKDEMEYDDDTETEEGMGSESEESD-EDPAESGDDSQEADKEHTISKS 119

Query: 804  DPIVEPEVENPESASKFDPALTSVDDMEEEKSQAKNMT-----------VKGRKKKINRV 658
            +     ++  P S  K      S DD    K + KN             +K R+KK+   
Sbjct: 120  ETTSVDDL--PYSVKK---GKKSKDDRGTAKLEEKNQNEGRLDDQKQGQIKKRRKKLKHT 174

Query: 657  FNPHFEKLRFEVEIILRKEPHILLVEIAQQTAKKVFVKTIDSIERCSVVEPKKNTDPIML 478
             +     L FE+      EPHILL +IA++ A+ + VK  ++I+ C +V+P  N     L
Sbjct: 175  IHVESSDLDFEIHYAFHDEPHILLAQIAKKIARTILVKACNNIDHCKIVKPMHNHT--RL 232

Query: 477  QTAGVNFLTFWKLEEYLDINKVVTNDIYAMLNTYGVEAARATIINEVKAVFEAYGIRVNM 298
            +TAGVNF   W L EY+ +N + +NDI+AML TYGVEAAR TII EV  VFE YGI V+M
Sbjct: 233  ETAGVNFEVVWNLSEYISVNDITSNDIHAMLKTYGVEAARGTIIKEVSGVFEPYGINVDM 292

Query: 297  RHLTLIADFMTLQGGYRPMNRLGMEHFGTSPFGKMTFETATRFIIEAANHGEVDTLECPS 118
            RHL+LIADFMTL GGYRPMNRLG+  F TSPFGKMTFETAT+FI++AA HGE D LECPS
Sbjct: 293  RHLSLIADFMTLDGGYRPMNRLGIGQFSTSPFGKMTFETATKFIVDAATHGEADFLECPS 352

Query: 117  ASVCLGQPVKMGTGCFDLLQNLHL 46
            ASVCLG+P K+GTG F LLQNL L
Sbjct: 353  ASVCLGKPPKVGTGIFGLLQNLEL 376


>ref|XP_006656244.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Oryza
            brachyantha]
          Length = 1755

 Score =  305 bits (781), Expect = 2e-80
 Identities = 177/382 (46%), Positives = 237/382 (62%), Gaps = 7/382 (1%)
 Frame = -1

Query: 1170 EALDNAIAKHLEMISKIRGIGFVTTENNFAEDGDEDEXXXXXXXXXXXXXXXXXXXXXXX 991
            +A+D AI+KHL+++ KI  I  V   +  ++  D  E                       
Sbjct: 1377 DAMDLAISKHLDLLHKINAIQAVKVNDTESQPSDGVEESENGPTDDGNGLSDGENEDDL- 1435

Query: 990  XXDQGADAEKRKRQVSDEMEYDEDVQKETPAMTDMH-DGEPQSGLESENDQVEPDEDYTV 814
                GADA+K K+Q  DEMEYD+D +KE  +  D   + + +   ESE+D+ +  E+   
Sbjct: 1436 ----GADAQKWKQQEIDEMEYDDDAEKEESSDMDSESEDDTKFKPESEDDRPKLGEELEE 1491

Query: 813  GGEDPIVEPEVENPESASKFDPALTSVDDMEEEKSQAKNMTVKGRKKKINRVFNPHFEK- 637
              E  +++   +   S +    A    D+  +   +   +T+K +K   N  +  H+E  
Sbjct: 1492 TEEGHVLDSSYKGKNSKATQATARLQ-DERNKVADEKAQVTIKFKK---NIKWTIHYEST 1547

Query: 636  -LRFEVEIILRKEPHILLVEIAQQTAKKVFVKTIDSIERCSV----VEPKKNTDPIMLQT 472
             L FEV   L+++PHILL +IAQ+TA+ VF+K   +I++C+V    V+  K  + I+LQT
Sbjct: 1548 GLNFEVHYALQEQPHILLAQIAQRTARSVFIKACSNIDQCTVNKIDVDSDKIDEAIVLQT 1607

Query: 471  AGVNFLTFWKLEEYLDINKVVTNDIYAMLNTYGVEAARATIINEVKAVFEAYGIRVNMRH 292
             GVNF  FW L +YLDIN+V +NDIYA+L TYGVEAARATII EV  VF AYGI VN RH
Sbjct: 1608 VGVNFGVFWNLVDYLDINEVRSNDIYAVLKTYGVEAARATIIEEVSGVFGAYGIDVNKRH 1667

Query: 291  LTLIADFMTLQGGYRPMNRLGMEHFGTSPFGKMTFETATRFIIEAANHGEVDTLECPSAS 112
            L+LIADFMT  GGYRPM+R GM  F TSPFGKMTFETAT+FI+EAA+HGE DTL+ PSAS
Sbjct: 1668 LSLIADFMTFDGGYRPMSRNGMGQFSTSPFGKMTFETATKFIVEAASHGESDTLDSPSAS 1727

Query: 111  VCLGQPVKMGTGCFDLLQNLHL 46
            +CLG+PVKMGTG F LLQN  L
Sbjct: 1728 ICLGKPVKMGTGTFGLLQNFCL 1749


>ref|XP_002440175.1| hypothetical protein SORBIDRAFT_09g027230 [Sorghum bicolor]
           gi|241945460|gb|EES18605.1| hypothetical protein
           SORBIDRAFT_09g027230 [Sorghum bicolor]
          Length = 311

 Score =  281 bits (720), Expect = 3e-73
 Identities = 146/309 (47%), Positives = 201/309 (65%), Gaps = 5/309 (1%)
 Frame = -1

Query: 957 KRQVSDEMEYDEDVQKETPAMTDMHDGEPQSGLESENDQVEPDEDYTVGGEDPIVEPEVE 778
           KRQ  DEMEYD+D + E    ++  + +      + +D  E D+++ +  E   V+    
Sbjct: 2   KRQEKDEMEYDDDTENEEGMGSESEESDDDP---AGDDSQEADKEHKIKSETTSVDDLSY 58

Query: 777 NPESA--SKFDPALTSVDDMEEEKSQA---KNMTVKGRKKKINRVFNPHFEKLRFEVEII 613
           + +    SK +     +++  + K +    K   +  R+KK+ R  +     L FE+   
Sbjct: 59  SAKKGKKSKDNHGTAKLEEKNQNKGRLGDQKQDQITKRRKKLTRTIHVESNDLDFEIHYA 118

Query: 612 LRKEPHILLVEIAQQTAKKVFVKTIDSIERCSVVEPKKNTDPIMLQTAGVNFLTFWKLEE 433
              EPHILL +IA++ A+ +FVK  ++I+ C +V+P+   D   +QTAGVNF   W L E
Sbjct: 119 FLDEPHILLAQIAKKIARTIFVKACNNIDDCKIVKPRD--DHARIQTAGVNFEVVWNLNE 176

Query: 432 YLDINKVVTNDIYAMLNTYGVEAARATIINEVKAVFEAYGIRVNMRHLTLIADFMTLQGG 253
           Y+ ++ + +NDI+A+L TYGVEAAR TIINEV  VF+ YGI V+MRHL++IADFMTL GG
Sbjct: 177 YISVHDITSNDIHAILKTYGVEAARNTIINEVSGVFKPYGIDVDMRHLSMIADFMTLDGG 236

Query: 252 YRPMNRLGMEHFGTSPFGKMTFETATRFIIEAANHGEVDTLECPSASVCLGQPVKMGTGC 73
           YRPMNR+G+  F TSPFGKMTFETAT+FI+EAA HGE D LECPSASVCLG+P K+GTG 
Sbjct: 237 YRPMNRIGIGQFSTSPFGKMTFETATKFIVEAATHGEADFLECPSASVCLGKPPKVGTGI 296

Query: 72  FDLLQNLHL 46
           F LLQNL L
Sbjct: 297 FGLLQNLEL 305


>ref|NP_001058063.2| Os06g0612200 [Oryza sativa Japonica Group]
           gi|255677221|dbj|BAF19977.2| Os06g0612200 [Oryza sativa
           Japonica Group]
          Length = 237

 Score =  280 bits (717), Expect = 6e-73
 Identities = 152/237 (64%), Positives = 183/237 (77%), Gaps = 7/237 (2%)
 Frame = -1

Query: 735 VDDMEEEKSQAKNMTVKGRKKKINRVFNPHFEK--LRFEVEIILRKEPHILLVEIAQQTA 562
           +++ E+EK+Q   +T+K +K   N  +  H+E   L FEV   L+++PHILL +IAQ+TA
Sbjct: 1   MNEAEDEKAQ---VTIKFKK---NIKWTIHYESTGLNFEVHYALQEQPHILLAQIAQRTA 54

Query: 561 KKVFVKTIDSIERCSVVEPKK---NT--DPIMLQTAGVNFLTFWKLEEYLDINKVVTNDI 397
           + VFVK   +I+RC V +PKK   NT   PI LQTAGVNF  F KL +YLDIN+V +NDI
Sbjct: 55  RSVFVKACKNIDRCEVNKPKKIDNNTINTPITLQTAGVNFEVFHKLVDYLDINEVRSNDI 114

Query: 396 YAMLNTYGVEAARATIINEVKAVFEAYGIRVNMRHLTLIADFMTLQGGYRPMNRLGMEHF 217
           +AMLNTYGVEAARATII EVK VF AYGI V+MRHL LIADFMT  GGYRPM+RLGM  F
Sbjct: 115 HAMLNTYGVEAARATIIGEVKGVFGAYGIHVDMRHLNLIADFMTFDGGYRPMSRLGMGQF 174

Query: 216 GTSPFGKMTFETATRFIIEAANHGEVDTLECPSASVCLGQPVKMGTGCFDLLQNLHL 46
            TSPFGKMTFETAT+FI+EAA+HGE DTL+ PSASVCLG+PVK+GTG F LLQN  L
Sbjct: 175 STSPFGKMTFETATKFIVEAASHGESDTLDGPSASVCLGKPVKVGTGSFGLLQNFSL 231


>ref|XP_003559192.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like
            [Brachypodium distachyon]
          Length = 1868

 Score =  280 bits (715), Expect = 1e-72
 Identities = 171/389 (43%), Positives = 238/389 (61%), Gaps = 14/389 (3%)
 Frame = -1

Query: 1170 EALDNAIAKHLEMISKIRGIGFVT---TENNFAEDGDEDEXXXXXXXXXXXXXXXXXXXX 1000
            ++++ AI KHL+++ ++ GI       TE++ +E  +E E                    
Sbjct: 1484 DSMEFAIEKHLKLLYRVSGIQETRVKDTESSLSEGPEESEGRPIDGEESGASDGDNENED 1543

Query: 999  XXXXXDQGADAEKRKRQVSDEMEYD--EDVQKETPAMTDMHDGEPQSGLESENDQVEPDE 826
                   G D EKRKRQ +DEMEYD  +DV+KE    +D  + E +  L++++D VE   
Sbjct: 1544 DL-----GTDGEKRKRQENDEMEYDGEDDVEKEDGMNSDPEE-ETKYELDNDDDLVESGG 1597

Query: 825  DYTVGGEDPIVEP-----EVENPESASKFDPALT-SVDDMEEEKSQAKNMTVKGRKKKIN 664
            +  V  E  + +      ++E   +A K    +  +V+++EE+K   K +    ++ K++
Sbjct: 1598 ESEVNDEGHVSDSSNKVGKLEGKLAAGKLKKEVNKTVENLEEQKQAQKGV----KRTKLS 1653

Query: 663  RVFNPHFEKLRFEVE-IILRKEPHILLVEIAQQTAKKVFVKTI--DSIERCSVVEPKKNT 493
            R  +     L FEV  ++L  EPHILL +IAQ+T + +FVK    + I++C VV P+K  
Sbjct: 1654 RTVHVESTGLNFEVHYLLLHNEPHILLSQIAQKTLRSLFVKGSHNNKIDQCKVVWPEKKG 1713

Query: 492  DPIMLQTAGVNFLTFWKLEEYLDINKVVTNDIYAMLNTYGVEAARATIINEVKAVFEAYG 313
            D   L+TAGVNF  FW L++YLDI KV +NDI+A+L TYGVEAARATII EVKAVFE +G
Sbjct: 1714 DFRGLKTAGVNFDVFWGLQDYLDICKVASNDIHAILRTYGVEAARATIIKEVKAVFEPFG 1773

Query: 312  IRVNMRHLTLIADFMTLQGGYRPMNRLGMEHFGTSPFGKMTFETATRFIIEAANHGEVDT 133
            I VN RHL+L+A+FMT  G YR M+ +GM  F TSPFGKMTFE ATRFI EAA +GE D 
Sbjct: 1774 INVNRRHLSLVAEFMTSGGDYRAMSSMGMAQFCTSPFGKMTFEQATRFITEAAFYGEADN 1833

Query: 132  LECPSASVCLGQPVKMGTGCFDLLQNLHL 46
            L  PSA++ LG+P K GTGCF LLQN  L
Sbjct: 1834 LNGPSATISLGKPAKTGTGCFGLLQNFCL 1862


>gb|EXC04356.1| DNA-directed RNA polymerase I subunit rpa1 [Morus notabilis]
          Length = 1770

 Score =  271 bits (692), Expect = 5e-70
 Identities = 164/403 (40%), Positives = 226/403 (56%), Gaps = 29/403 (7%)
 Frame = -1

Query: 1167 ALDNAIAKHLEMISKIRGIGFVTTENNFAEDGDEDEXXXXXXXXXXXXXXXXXXXXXXXX 988
            AL++AI  HL ++ KI GI   T ++      D DE                        
Sbjct: 1380 ALEDAIKNHLNLLDKINGIQNFTADSQSVAASDGDEDFSSSKAERDEEDDDGGDGDNEGQ 1439

Query: 987  XDQGADAEKRKRQVSDEMEYDEDVQKETPAMTDMHDGEPQSGLESENDQVEPDEDYTVGG 808
             D G DA K+KRQ +DEM+YD+D  +       +++   ++G ESE+D  E + ++    
Sbjct: 1440 EDLGLDAVKQKRQATDEMDYDDDYDER------VNEEATRAGSESEDDNDEDEVEFRKDN 1493

Query: 807  EDPIVEPEVENPESASKFDPALTSVDDMEEEKSQAKNMTVKGRKKKINRVFNPHFEK--- 637
            E  +++ +  + ES SK +   TS     + KS+AK       KKKI R FN   +    
Sbjct: 1494 EVEMLDAKGGHLESPSKAEGFSTSESLKTKTKSRAKG------KKKIRRQFNRKDDDRSI 1547

Query: 636  ------LRFEVEIILRKEPHILLVEIAQQTAKKVFVKTIDSIERCSVVEPKKNT------ 493
                    F+V      E HILL +IAQ TA +V++++   ++ C  +  K+N       
Sbjct: 1548 FVEAKGFYFKVHFRFSNEAHILLAQIAQNTATRVYIQSSGKVDNCQQITCKENQVIYYGK 1607

Query: 492  DPIM--------------LQTAGVNFLTFWKLEEYLDINKVVTNDIYAMLNTYGVEAARA 355
            DP                LQT+GV+F+TFWKL++ LD+  + +NDI+AMLNTYGVEAAR 
Sbjct: 1608 DPKSRDDIPLEEKENIPALQTSGVDFMTFWKLQDILDVRYIYSNDIHAMLNTYGVEAARE 1667

Query: 354  TIINEVKAVFEAYGIRVNMRHLTLIADFMTLQGGYRPMNRLGMEHFGTSPFGKMTFETAT 175
            TII E+  VF++YGI VN+RHLTLIADFMT  GGYR M+R G      SPF KM FETA+
Sbjct: 1668 TIIREITNVFKSYGISVNIRHLTLIADFMTHTGGYRSMSRHGGIADSISPFSKMCFETAS 1727

Query: 174  RFIIEAANHGEVDTLECPSASVCLGQPVKMGTGCFDLLQNLHL 46
            +FI+EAA H E+D LE PSA +CLG PVK+GTGCFDL+Q L +
Sbjct: 1728 KFIVEAAYHREMDDLETPSARICLGLPVKVGTGCFDLMQKLEI 1770


>gb|EMS52925.1| DNA-directed RNA polymerase I subunit rpa1 [Triticum urartu]
          Length = 1915

 Score =  270 bits (691), Expect = 6e-70
 Identities = 168/400 (42%), Positives = 230/400 (57%), Gaps = 25/400 (6%)
 Frame = -1

Query: 1170 EALDNAIAKHLEMISKIRGIGFVT---TENNFAEDGDEDEXXXXXXXXXXXXXXXXXXXX 1000
            +A++ AI KHL ++ K+ GI       TE+  +E  +E E                    
Sbjct: 1518 DAMEYAIEKHLNLLHKVSGIQETRVKDTESLPSEGPEESEGRPTDGDESDASDGDDENED 1577

Query: 999  XXXXXDQGADAEKRKRQVSDEMEYDEDVQKETPAMTDMHDGEPQSGLESENDQVEPDEDY 820
                   GADAEKRKRQ +DEMEY++D++ E    +D  D E +  L++E+D  E   + 
Sbjct: 1578 DL-----GADAEKRKRQENDEMEYEDDIENEDGMNSDP-DEETKHELDNEDDPAESGVES 1631

Query: 819  TVGGEDPIVEP-----EVENPESASKFDPALTSVDDMEEEKSQAKNMTVKGRKKKINRVF 655
                E  + +      ++E   +A+K        + +E  K Q +    + R KK+    
Sbjct: 1632 EENDEGHLSDSSNKTAKLEGGLAATKLKKKRN--ETVENLKEQKQAQITQKRSKKLKLTV 1689

Query: 654  NPHFEKLRFEVEIILRKEPHILLVEIAQQTAKKVFVKTIDS--IERCSVVEPKKNTDPIM 481
            +     L FEV  IL KEPHILL +IAQ+T + +FV    +  I  C+V+ P+K      
Sbjct: 1690 HVESADLNFEVHYILHKEPHILLSQIAQKTLRSLFVSGSHNKNIGLCNVIWPEKKKKGET 1749

Query: 480  ---------------LQTAGVNFLTFWKLEEYLDINKVVTNDIYAMLNTYGVEAARATII 346
                           LQT+G++F  FW L+++L++ K+ +NDI+AML TYGVEAARATII
Sbjct: 1750 ETKQKETEREEAYRGLQTSGLDFEVFWDLQDFLNVRKLTSNDIHAMLRTYGVEAARATII 1809

Query: 345  NEVKAVFEAYGIRVNMRHLTLIADFMTLQGGYRPMNRLGMEHFGTSPFGKMTFETATRFI 166
            NEVKAVFE +GI+V+ RHL+L AD+MT  G YRPMN LGM  F TSPFGKM+FE ATRFI
Sbjct: 1810 NEVKAVFEPFGIKVDPRHLSLAADYMTSGGSYRPMNSLGMARFCTSPFGKMSFEQATRFI 1869

Query: 165  IEAANHGEVDTLECPSASVCLGQPVKMGTGCFDLLQNLHL 46
            +EAA HGEVD L  PSA+V LG+P K GTG F L+QN+ L
Sbjct: 1870 MEAAYHGEVDNLTGPSATVSLGKPAKTGTGAFGLMQNITL 1909


>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score =  268 bits (686), Expect = 2e-69
 Identities = 161/394 (40%), Positives = 223/394 (56%), Gaps = 21/394 (5%)
 Frame = -1

Query: 1164 LDNAIAKHLEMISKIRGIGFVTTENNFAEDGDEDEXXXXXXXXXXXXXXXXXXXXXXXXX 985
            L++AI  HL ++SKI GI     ++      + DE                         
Sbjct: 1288 LEDAIQNHLLLLSKISGIKNFLPDSRSMASKETDEDASGDGLAGGNGDEDDDGEDDGGAE 1347

Query: 984  DQGADAEKRKRQVSDEMEYDEDVQKETPAMTDMHDGEPQSGLESENDQVEPDEDYTVGGE 805
            D G DA+KRK+Q SDEM+Y +       +  +  +GEP +GL  E D VE + + +   E
Sbjct: 1348 DLGLDAQKRKQQASDEMDYGD-------SEGEPDEGEPSAGLTEEIDLVEDEVEISNNEE 1400

Query: 804  DPIVEPEVENPESASKFDPALTSVDDMEEEKSQAKNMT-VKGRKKKINRVFNPHFEKLRF 628
              I +P+ E+ +  SK     +     ++ K++AK     +  KK  +R      +   F
Sbjct: 1401 VGISDPKDEDSKVPSK-----SKSSKNKKAKTEAKRKKRFRAIKKDFDRAILVKAKGTYF 1455

Query: 627  EVEIILRKEPHILLVEIAQQTAKKVFVKTIDSIERCSVVEPKKNT------DPIM----- 481
            EV      EPHILL +IAQ+ A KV++++   I+ C V++  K+       DP       
Sbjct: 1456 EVHFRFTNEPHILLAQIAQKAANKVYIRSSGKIDLCQVIDCNKDQVIYYGRDPKKRENIP 1515

Query: 480  ---------LQTAGVNFLTFWKLEEYLDINKVVTNDIYAMLNTYGVEAARATIINEVKAV 328
                     LQTAGV+F  FWK+++ LD+  V +N+++AMLNT+GVEAARATII EV  V
Sbjct: 1516 GEEKKKLPALQTAGVDFTAFWKMQDELDVRYVYSNNVHAMLNTFGVEAARATIIKEVFNV 1575

Query: 327  FEAYGIRVNMRHLTLIADFMTLQGGYRPMNRLGMEHFGTSPFGKMTFETATRFIIEAANH 148
            F AYG++VN+RHL+LIADFMT  GGYRPMNR G      SPF KMTFETA++FI+EAA+H
Sbjct: 1576 FNAYGVKVNIRHLSLIADFMTHSGGYRPMNRHGGIAESVSPFSKMTFETASKFIVEAASH 1635

Query: 147  GEVDTLECPSASVCLGQPVKMGTGCFDLLQNLHL 46
            G  D LE  SA +CLG PVKMGTGCFDL+Q + +
Sbjct: 1636 GMTDNLESASARICLGLPVKMGTGCFDLMQKIEI 1669


>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
            vinifera]
          Length = 1740

 Score =  268 bits (686), Expect = 2e-69
 Identities = 161/394 (40%), Positives = 223/394 (56%), Gaps = 21/394 (5%)
 Frame = -1

Query: 1164 LDNAIAKHLEMISKIRGIGFVTTENNFAEDGDEDEXXXXXXXXXXXXXXXXXXXXXXXXX 985
            L++AI  HL ++SKI GI     ++      + DE                         
Sbjct: 1359 LEDAIQNHLLLLSKISGIKNFLPDSRSMASKETDEDASGDGLAGGNGDEDDDGEDDGGAE 1418

Query: 984  DQGADAEKRKRQVSDEMEYDEDVQKETPAMTDMHDGEPQSGLESENDQVEPDEDYTVGGE 805
            D G DA+KRK+Q SDEM+Y +       +  +  +GEP +GL  E D VE + + +   E
Sbjct: 1419 DLGLDAQKRKQQASDEMDYGD-------SEGEPDEGEPSAGLTEEIDLVEDEVEISNNEE 1471

Query: 804  DPIVEPEVENPESASKFDPALTSVDDMEEEKSQAKNMT-VKGRKKKINRVFNPHFEKLRF 628
              I +P+ E+ +  SK     +     ++ K++AK     +  KK  +R      +   F
Sbjct: 1472 VGISDPKDEDSKVPSK-----SKSSKNKKAKTEAKRKKRFRAIKKDFDRAILVKAKGTYF 1526

Query: 627  EVEIILRKEPHILLVEIAQQTAKKVFVKTIDSIERCSVVEPKKNT------DPIM----- 481
            EV      EPHILL +IAQ+ A KV++++   I+ C V++  K+       DP       
Sbjct: 1527 EVHFRFTNEPHILLAQIAQKAANKVYIRSSGKIDLCQVIDCNKDQVIYYGRDPKKRENIP 1586

Query: 480  ---------LQTAGVNFLTFWKLEEYLDINKVVTNDIYAMLNTYGVEAARATIINEVKAV 328
                     LQTAGV+F  FWK+++ LD+  V +N+++AMLNT+GVEAARATII EV  V
Sbjct: 1587 GEEKKKLPALQTAGVDFTAFWKMQDELDVRYVYSNNVHAMLNTFGVEAARATIIKEVFNV 1646

Query: 327  FEAYGIRVNMRHLTLIADFMTLQGGYRPMNRLGMEHFGTSPFGKMTFETATRFIIEAANH 148
            F AYG++VN+RHL+LIADFMT  GGYRPMNR G      SPF KMTFETA++FI+EAA+H
Sbjct: 1647 FNAYGVKVNIRHLSLIADFMTHSGGYRPMNRHGGIAESVSPFSKMTFETASKFIVEAASH 1706

Query: 147  GEVDTLECPSASVCLGQPVKMGTGCFDLLQNLHL 46
            G  D LE  SA +CLG PVKMGTGCFDL+Q + +
Sbjct: 1707 GMTDNLESASARICLGLPVKMGTGCFDLMQKIEI 1740


>ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            lycopersicum]
          Length = 1677

 Score =  267 bits (682), Expect = 7e-69
 Identities = 162/400 (40%), Positives = 227/400 (56%), Gaps = 27/400 (6%)
 Frame = -1

Query: 1164 LDNAIAKHLEMISKIRGIGFVTTENNFAEDGDEDEXXXXXXXXXXXXXXXXXXXXXXXXX 985
            L++AI  HL ++SKI GI    T +  + D DE E                         
Sbjct: 1291 LEDAIESHLALLSKINGIQNFKTSSE-SVDSDETEENASSTRREEEMLDDDDDDEDERTE 1349

Query: 984  DQGADAEKRKRQVSDEMEYDEDVQKETPAMTDMHDGEPQSGLESENDQVEPDEDYTVGGE 805
            D  +DA+KRK+Q +DEM+YD+D         D  + E ++  E E+++ E  ++   G E
Sbjct: 1350 DLSSDAQKRKQQTTDEMDYDDD--------EDEAEAEAEATAEIEDEKSEQTDEIDNGDE 1401

Query: 804  DPIVEPEVENPESASKFDPALTSVDDMEEEKSQAKNMTVKGRKKKINR--------VFNP 649
            +     +  N E  SK       + + +  KS+ K  TVK +KKK  R        VF  
Sbjct: 1402 EE--NGDRGNEEHTSKLQSTEEDISNTKTSKSKTKT-TVKQKKKKERRSKKDSDRCVF-V 1457

Query: 648  HFEKLRFEVEIILRKEPHILLVEIAQQTAKKVFVKTIDSIERCSVVEPKKNTDPIM---- 481
              E L FEV      EPHILL ++AQ+TAKKV+VK    I++C +V+ +   + +M    
Sbjct: 1458 DVEGLHFEVHFRFVNEPHILLAQVAQKTAKKVYVKNSGKIDQCRMVKYEVTENTVMWDEN 1517

Query: 480  ---------------LQTAGVNFLTFWKLEEYLDINKVVTNDIYAMLNTYGVEAARATII 346
                           L+ AGV+F TFW++++ LD+ ++ TN+I AMLNTYGVEAARA+I+
Sbjct: 1518 QTKQQRQDSDSAYWALKAAGVDFGTFWEMQDDLDVTRIYTNNIRAMLNTYGVEAARASIL 1577

Query: 345  NEVKAVFEAYGIRVNMRHLTLIADFMTLQGGYRPMNRLGMEHFGTSPFGKMTFETATRFI 166
             EVK VF  YG+ ++ RHL+LIADFMT  GGY+PM+R G      SPF KM+FETA++FI
Sbjct: 1578 REVKTVFGIYGVEIDFRHLSLIADFMTHTGGYQPMSRHGSISESLSPFLKMSFETASKFI 1637

Query: 165  IEAANHGEVDTLECPSASVCLGQPVKMGTGCFDLLQNLHL 46
            +EAA HG  D LE PS+ +CLG PVKMGTGCFD++Q L +
Sbjct: 1638 VEAAAHGLTDNLETPSSRICLGLPVKMGTGCFDIMQELDI 1677


>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
            communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
            polymerase I largest subunit, putative [Ricinus communis]
          Length = 1686

 Score =  267 bits (682), Expect = 7e-69
 Identities = 164/401 (40%), Positives = 221/401 (55%), Gaps = 28/401 (6%)
 Frame = -1

Query: 1164 LDNAIAKHLEMISKIRGIGFVTTENNFAEDGDEDEXXXXXXXXXXXXXXXXXXXXXXXXX 985
            L++AI  H+ ++S+I GI     E+     G+ DE                         
Sbjct: 1289 LEDAIQNHMFLLSRISGIKDFLPESRSRASGEADEDVAGDMSHREERDDDNDDDDGERAD 1348

Query: 984  DQGADAEKRKRQVSDEMEYDEDVQKETPAMTDMHDGEPQSGLESENDQ----VEPDEDYT 817
            D G DA+KRK Q +DEM+YD+  ++E     +    E +SG ESE DQ     E   D  
Sbjct: 1349 DLGLDAQKRKLQATDEMDYDDGFEEELNE-GESTASEEESGFESEIDQGDNETEISNDVM 1407

Query: 816  VGGEDPIVEPEVENPESASKFDPALTSVDDMEEEKSQAKNMTVKGRKKKINRVFNPHF-- 643
            +  E     P +  P        A  S    E+ K + K    K RK +I++ F+     
Sbjct: 1408 LDNEASETLP-LRKPSKPKSKKKAAESPSHGEKSKDKKKKPKAK-RKSRISKDFDRAIFV 1465

Query: 642  --EKLRFEVEIILRKEPHILLVEIAQQTAKKVFVKTIDSIERCSVVE------------P 505
               K+ FEV      EPHILL EIAQ+TAKKV+++    IE+C V +            P
Sbjct: 1466 EARKMHFEVHFKFTNEPHILLAEIAQKTAKKVYIQNPGKIEQCRVTDCKESQVIYYGKDP 1525

Query: 504  KKNTD--------PIMLQTAGVNFLTFWKLEEYLDINKVVTNDIYAMLNTYGVEAARATI 349
            K+  D           L   GV+F TFWK++++LD+  + +N+I+AML TYGVEAAR TI
Sbjct: 1526 KERVDLKPDVKEKVPALHATGVDFNTFWKMQDHLDVRYIYSNNIHAMLKTYGVEAARETI 1585

Query: 348  INEVKAVFEAYGIRVNMRHLTLIADFMTLQGGYRPMNRLGMEHFGTSPFGKMTFETATRF 169
            I E+  VF++YGI V+ RHL+LIADFMT  GGYRPM+R+G      SPF KM+FETA++F
Sbjct: 1586 IREINHVFKSYGIAVSNRHLSLIADFMTHTGGYRPMSRMGGIAESISPFSKMSFETASKF 1645

Query: 168  IIEAANHGEVDTLECPSASVCLGQPVKMGTGCFDLLQNLHL 46
            I+EAA HGE+D LE PSA +CLG PVKMGTG FDL+Q L +
Sbjct: 1646 IVEAALHGEIDNLETPSARICLGLPVKMGTGSFDLMQKLEI 1686


>ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            tuberosum]
          Length = 1675

 Score =  264 bits (674), Expect = 6e-68
 Identities = 161/401 (40%), Positives = 225/401 (56%), Gaps = 28/401 (6%)
 Frame = -1

Query: 1164 LDNAIAKHLEMISKIRGIGFVTTENNFAEDGDEDEXXXXXXXXXXXXXXXXXXXXXXXXX 985
            L++AI  HL ++SKI GI    T +   E  D DE                         
Sbjct: 1291 LEDAIESHLALLSKINGIQNFKTSS---ESVDSDETEENASSTRHEEEMLDDEDEDERTE 1347

Query: 984  DQGADAEKRKRQVSDEMEYDEDVQKETPAMTDMHDGEPQSGLESENDQVEPDEDYTVGGE 805
            D  +DA+KRK+Q +DEM+YD+D  ++          E ++  E E+++ E  ++   G E
Sbjct: 1348 DLSSDAQKRKQQTTDEMDYDDDENED----------EAETTAEIEDEKSEQTDEIDNGDE 1397

Query: 804  DPIVEPEVENPESASKFDPALTSVDDMEEEKSQAKNMT-VKGRKKKINR--------VFN 652
            + I      N E  SK       + + +  KS+ K  T VK  KKK  R        VF 
Sbjct: 1398 EEIGNRG--NEEQMSKLQSTEDDISNTKSSKSKTKTKTTVKQNKKKERRSKKDSDRCVF- 1454

Query: 651  PHFEKLRFEVEIILRKEPHILLVEIAQQTAKKVFVKTIDSIERCSVVEPKKNTDPIM--- 481
               E L FEV      EPHILL ++AQ+TAKKV++K    I++C +V+ +   + +M   
Sbjct: 1455 VDVEGLHFEVHFRFVNEPHILLAQVAQKTAKKVYIKNSGKIDQCRMVKYEVTENTVMWDE 1514

Query: 480  ----------------LQTAGVNFLTFWKLEEYLDINKVVTNDIYAMLNTYGVEAARATI 349
                            L+ AGV+F TFW++++ LD+ ++ TN+I AMLNTYGVEAARA+I
Sbjct: 1515 YQTKQQSQDSDSAYWALKAAGVDFGTFWEMQDDLDVTRIYTNNIRAMLNTYGVEAARASI 1574

Query: 348  INEVKAVFEAYGIRVNMRHLTLIADFMTLQGGYRPMNRLGMEHFGTSPFGKMTFETATRF 169
            + EVK VF  YG+ ++ RHL+LIADFMT  GGY+PM+R G      SPF KM+FETA++F
Sbjct: 1575 LREVKTVFGIYGVEIDFRHLSLIADFMTHTGGYQPMSRHGSISESLSPFLKMSFETASKF 1634

Query: 168  IIEAANHGEVDTLECPSASVCLGQPVKMGTGCFDLLQNLHL 46
            I+EAA HG  D LE PS+ +CLG PVKMGTGCFD++Q L +
Sbjct: 1635 IVEAAAHGLTDNLETPSSRICLGLPVKMGTGCFDIMQKLDI 1675


>gb|EOY09358.1| Nuclear RNA polymerase A1 isoform 4 [Theobroma cacao]
          Length = 1397

 Score =  263 bits (673), Expect = 8e-68
 Identities = 161/399 (40%), Positives = 228/399 (57%), Gaps = 26/399 (6%)
 Frame = -1

Query: 1164 LDNAIAKHLEMISKIRGIG--FVTTENNFAEDGDEDEXXXXXXXXXXXXXXXXXXXXXXX 991
            L++AI  HL ++SKI GI      ++ N + + DED                        
Sbjct: 1008 LEDAIQNHLVLLSKISGIKKFMPDSQRNASNEMDEDVSEGRSRETKNDDDDDDDDADDEE 1067

Query: 990  XXDQ-GADAEKRKRQVSDEMEYDEDVQKETPAMTDMHDGEPQSGLESENDQVEPDEDYTV 814
              +  G DA+K+K+Q +DEM+Y++D + E       ++G   + LESE D  E DE  T+
Sbjct: 1068 RAEDLGLDAQKQKQQTTDEMDYEDDSEVE------QNEGASLAALESEIDMSE-DETGTI 1120

Query: 813  -----GGEDPIVEPEVENPESASKFDPALTSVDDMEEEKSQAKNMTVKGRKKKINRVFNP 649
                 G ++   E    +P   ++ +P   S ++    + + K M  K  +K+ +R    
Sbjct: 1121 QINMIGSDNGKDEISQSSPNLENRSNPK--SREEKTGSEPKRKKMKAKFVRKESDRAIFN 1178

Query: 648  HFEKLRFEVEIILRKEPHILLVEIAQQTAKKVFVKTIDSIERCSVVE------------P 505
                L FEV   L+ EPHILL +IA++TAKKV++++   I++C V +            P
Sbjct: 1179 AIRGLCFEVHFKLKNEPHILLAQIAEKTAKKVYIQSFGKIDQCRVTDCSENQVFYYGEDP 1238

Query: 504  KKNTDPI------MLQTAGVNFLTFWKLEEYLDINKVVTNDIYAMLNTYGVEAARATIIN 343
            KK   P        L T GV+F  FWK+E+++D+  + +N I+AMLNTYGVEAAR TII 
Sbjct: 1239 KKRKSPSDKEKIQALHTTGVDFGAFWKMEDHIDVRYLYSNSIHAMLNTYGVEAARETIIR 1298

Query: 342  EVKAVFEAYGIRVNMRHLTLIADFMTLQGGYRPMNRLGMEHFGTSPFGKMTFETATRFII 163
            E+  VF +YGI VN+RHLTLIADFMT  G YRPM+RLG      SPF KM+FETA++FI+
Sbjct: 1299 EISHVFTSYGIAVNIRHLTLIADFMTHSGRYRPMSRLGGIAESISPFSKMSFETASKFIV 1358

Query: 162  EAANHGEVDTLECPSASVCLGQPVKMGTGCFDLLQNLHL 46
            EAA HG VD LE PS+ +CLG PVKMGTG FDL+Q + +
Sbjct: 1359 EAAKHGLVDNLETPSSRICLGLPVKMGTGSFDLMQKVEI 1397


>gb|EOY09357.1| Nuclear RNA polymerase A1 isoform 3 [Theobroma cacao]
          Length = 1400

 Score =  263 bits (673), Expect = 8e-68
 Identities = 161/399 (40%), Positives = 228/399 (57%), Gaps = 26/399 (6%)
 Frame = -1

Query: 1164 LDNAIAKHLEMISKIRGIG--FVTTENNFAEDGDEDEXXXXXXXXXXXXXXXXXXXXXXX 991
            L++AI  HL ++SKI GI      ++ N + + DED                        
Sbjct: 1011 LEDAIQNHLVLLSKISGIKKFMPDSQRNASNEMDEDVSEGRSRETKNDDDDDDDDADDEE 1070

Query: 990  XXDQ-GADAEKRKRQVSDEMEYDEDVQKETPAMTDMHDGEPQSGLESENDQVEPDEDYTV 814
              +  G DA+K+K+Q +DEM+Y++D + E       ++G   + LESE D  E DE  T+
Sbjct: 1071 RAEDLGLDAQKQKQQTTDEMDYEDDSEVE------QNEGASLAALESEIDMSE-DETGTI 1123

Query: 813  -----GGEDPIVEPEVENPESASKFDPALTSVDDMEEEKSQAKNMTVKGRKKKINRVFNP 649
                 G ++   E    +P   ++ +P   S ++    + + K M  K  +K+ +R    
Sbjct: 1124 QINMIGSDNGKDEISQSSPNLENRSNPK--SREEKTGSEPKRKKMKAKFVRKESDRAIFN 1181

Query: 648  HFEKLRFEVEIILRKEPHILLVEIAQQTAKKVFVKTIDSIERCSVVE------------P 505
                L FEV   L+ EPHILL +IA++TAKKV++++   I++C V +            P
Sbjct: 1182 AIRGLCFEVHFKLKNEPHILLAQIAEKTAKKVYIQSFGKIDQCRVTDCSENQVFYYGEDP 1241

Query: 504  KKNTDPI------MLQTAGVNFLTFWKLEEYLDINKVVTNDIYAMLNTYGVEAARATIIN 343
            KK   P        L T GV+F  FWK+E+++D+  + +N I+AMLNTYGVEAAR TII 
Sbjct: 1242 KKRKSPSDKEKIQALHTTGVDFGAFWKMEDHIDVRYLYSNSIHAMLNTYGVEAARETIIR 1301

Query: 342  EVKAVFEAYGIRVNMRHLTLIADFMTLQGGYRPMNRLGMEHFGTSPFGKMTFETATRFII 163
            E+  VF +YGI VN+RHLTLIADFMT  G YRPM+RLG      SPF KM+FETA++FI+
Sbjct: 1302 EISHVFTSYGIAVNIRHLTLIADFMTHSGRYRPMSRLGGIAESISPFSKMSFETASKFIV 1361

Query: 162  EAANHGEVDTLECPSASVCLGQPVKMGTGCFDLLQNLHL 46
            EAA HG VD LE PS+ +CLG PVKMGTG FDL+Q + +
Sbjct: 1362 EAAKHGLVDNLETPSSRICLGLPVKMGTGSFDLMQKVEI 1400


>gb|EOY09356.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
          Length = 1689

 Score =  263 bits (673), Expect = 8e-68
 Identities = 161/399 (40%), Positives = 228/399 (57%), Gaps = 26/399 (6%)
 Frame = -1

Query: 1164 LDNAIAKHLEMISKIRGIG--FVTTENNFAEDGDEDEXXXXXXXXXXXXXXXXXXXXXXX 991
            L++AI  HL ++SKI GI      ++ N + + DED                        
Sbjct: 1300 LEDAIQNHLVLLSKISGIKKFMPDSQRNASNEMDEDVSEGRSRETKNDDDDDDDDADDEE 1359

Query: 990  XXDQ-GADAEKRKRQVSDEMEYDEDVQKETPAMTDMHDGEPQSGLESENDQVEPDEDYTV 814
              +  G DA+K+K+Q +DEM+Y++D + E       ++G   + LESE D  E DE  T+
Sbjct: 1360 RAEDLGLDAQKQKQQTTDEMDYEDDSEVE------QNEGASLAALESEIDMSE-DETGTI 1412

Query: 813  -----GGEDPIVEPEVENPESASKFDPALTSVDDMEEEKSQAKNMTVKGRKKKINRVFNP 649
                 G ++   E    +P   ++ +P   S ++    + + K M  K  +K+ +R    
Sbjct: 1413 QINMIGSDNGKDEISQSSPNLENRSNPK--SREEKTGSEPKRKKMKAKFVRKESDRAIFN 1470

Query: 648  HFEKLRFEVEIILRKEPHILLVEIAQQTAKKVFVKTIDSIERCSVVE------------P 505
                L FEV   L+ EPHILL +IA++TAKKV++++   I++C V +            P
Sbjct: 1471 AIRGLCFEVHFKLKNEPHILLAQIAEKTAKKVYIQSFGKIDQCRVTDCSENQVFYYGEDP 1530

Query: 504  KKNTDPI------MLQTAGVNFLTFWKLEEYLDINKVVTNDIYAMLNTYGVEAARATIIN 343
            KK   P        L T GV+F  FWK+E+++D+  + +N I+AMLNTYGVEAAR TII 
Sbjct: 1531 KKRKSPSDKEKIQALHTTGVDFGAFWKMEDHIDVRYLYSNSIHAMLNTYGVEAARETIIR 1590

Query: 342  EVKAVFEAYGIRVNMRHLTLIADFMTLQGGYRPMNRLGMEHFGTSPFGKMTFETATRFII 163
            E+  VF +YGI VN+RHLTLIADFMT  G YRPM+RLG      SPF KM+FETA++FI+
Sbjct: 1591 EISHVFTSYGIAVNIRHLTLIADFMTHSGRYRPMSRLGGIAESISPFSKMSFETASKFIV 1650

Query: 162  EAANHGEVDTLECPSASVCLGQPVKMGTGCFDLLQNLHL 46
            EAA HG VD LE PS+ +CLG PVKMGTG FDL+Q + +
Sbjct: 1651 EAAKHGLVDNLETPSSRICLGLPVKMGTGSFDLMQKVEI 1689


>ref|XP_006381018.1| hypothetical protein POPTR_0006s05420g [Populus trichocarpa]
            gi|550335519|gb|ERP58815.1| hypothetical protein
            POPTR_0006s05420g [Populus trichocarpa]
          Length = 1132

 Score =  256 bits (654), Expect = 1e-65
 Identities = 164/416 (39%), Positives = 223/416 (53%), Gaps = 43/416 (10%)
 Frame = -1

Query: 1164 LDNAIAKHLEMISKIRGIGFVTTENNFAEDGDEDEXXXXXXXXXXXXXXXXXXXXXXXXX 985
            L++AI  +L ++SKI GI     E++     + +E                         
Sbjct: 722  LEDAIQNYLVLLSKISGIKNFLKESHSGTPIEAEEDVSGNISREGENDDDSDDEEGEEAD 781

Query: 984  DQGADAEKRKRQVSDEMEYD---EDVQKETPAMTDMHDGEPQSGLESEN----------- 847
            D G D +KRK+QV+DEM+YD   E V  E     D+   +  SG ES+            
Sbjct: 782  DLGLDVQKRKQQVTDEMDYDDGSEGVLNEDEG--DLSGSQAPSGSESDTEPADKESEISN 839

Query: 846  -DQVEPDEDYTVGGEDPIVEPEVENPESASKFDPALTSVD------DMEEEKSQAKNMTV 688
             D V+ D +Y    E P        P+S  K   + + V+        E++K +AK   V
Sbjct: 840  TDMVDYDSEYF---EKPTHLGNYSKPKSRKKTSESSSQVEMHSKLKSTEKKKQKAKGKKV 896

Query: 687  KGR--KKKINRVFNPHFEKLRFEVEIILRKEPHILLVEIAQQTAKKVFVKTIDSIERCSV 514
            + +  KK  +R      + L FE+ +    EPHILL EIAQ+TAKKV ++    ++RC V
Sbjct: 897  RSKLVKKDFDRSIFVEAKGLHFEIHLKFTNEPHILLAEIAQKTAKKVCIQNPGKVQRCQV 956

Query: 513  VEPKKNT------DPIM--------------LQTAGVNFLTFWKLEEYLDINKVVTNDIY 394
             + K+N       DP                L T GV+F TFWK++++LD+  + +N I+
Sbjct: 957  TDCKENQVIYYGKDPKRRIDIEPGEKQKIPALHTIGVDFNTFWKMQDHLDVRYMYSNSIH 1016

Query: 393  AMLNTYGVEAARATIINEVKAVFEAYGIRVNMRHLTLIADFMTLQGGYRPMNRLGMEHFG 214
             ML  YGVEAAR TII E+K VF +YGI VN RHL+LIAD+MT  G YRPM+R+G     
Sbjct: 1017 GMLKAYGVEAARETIIREIKHVFNSYGISVNTRHLSLIADYMTHTGEYRPMSRIGGISES 1076

Query: 213  TSPFGKMTFETATRFIIEAANHGEVDTLECPSASVCLGQPVKMGTGCFDLLQNLHL 46
             SP  KM+FETA++FI+EAA HGEVD LE PSA VCLG PVKMGTG FDL+Q L +
Sbjct: 1077 ISPLSKMSFETASKFIVEAALHGEVDNLEAPSARVCLGLPVKMGTGSFDLMQKLEI 1132


>ref|XP_002308050.1| predicted protein [Populus trichocarpa]
          Length = 464

 Score =  256 bits (654), Expect = 1e-65
 Identities = 164/416 (39%), Positives = 223/416 (53%), Gaps = 43/416 (10%)
 Frame = -1

Query: 1164 LDNAIAKHLEMISKIRGIGFVTTENNFAEDGDEDEXXXXXXXXXXXXXXXXXXXXXXXXX 985
            L++AI  +L ++SKI GI     E++     + +E                         
Sbjct: 54   LEDAIQNYLVLLSKISGIKNFLKESHSGTPIEAEEDVSGNISREGENDDDSDDEEGEEAD 113

Query: 984  DQGADAEKRKRQVSDEMEYD---EDVQKETPAMTDMHDGEPQSGLESEN----------- 847
            D G D +KRK+QV+DEM+YD   E V  E     D+   +  SG ES+            
Sbjct: 114  DLGLDVQKRKQQVTDEMDYDDGSEGVLNEDEG--DLSGSQAPSGSESDTEPADKESEISN 171

Query: 846  -DQVEPDEDYTVGGEDPIVEPEVENPESASKFDPALTSVD------DMEEEKSQAKNMTV 688
             D V+ D +Y    E P        P+S  K   + + V+        E++K +AK   V
Sbjct: 172  TDMVDYDSEYF---EKPTHLGNYSKPKSRKKTSESSSQVEMHSKLKSTEKKKQKAKGKKV 228

Query: 687  KGR--KKKINRVFNPHFEKLRFEVEIILRKEPHILLVEIAQQTAKKVFVKTIDSIERCSV 514
            + +  KK  +R      + L FE+ +    EPHILL EIAQ+TAKKV ++    ++RC V
Sbjct: 229  RSKLVKKDFDRSIFVEAKGLHFEIHLKFTNEPHILLAEIAQKTAKKVCIQNPGKVQRCQV 288

Query: 513  VEPKKNT------DPIM--------------LQTAGVNFLTFWKLEEYLDINKVVTNDIY 394
             + K+N       DP                L T GV+F TFWK++++LD+  + +N I+
Sbjct: 289  TDCKENQVIYYGKDPKRRIDIEPGEKQKIPALHTIGVDFNTFWKMQDHLDVRYMYSNSIH 348

Query: 393  AMLNTYGVEAARATIINEVKAVFEAYGIRVNMRHLTLIADFMTLQGGYRPMNRLGMEHFG 214
             ML  YGVEAAR TII E+K VF +YGI VN RHL+LIAD+MT  G YRPM+R+G     
Sbjct: 349  GMLKAYGVEAARETIIREIKHVFNSYGISVNTRHLSLIADYMTHTGEYRPMSRIGGISES 408

Query: 213  TSPFGKMTFETATRFIIEAANHGEVDTLECPSASVCLGQPVKMGTGCFDLLQNLHL 46
             SP  KM+FETA++FI+EAA HGEVD LE PSA VCLG PVKMGTG FDL+Q L +
Sbjct: 409  ISPLSKMSFETASKFIVEAALHGEVDNLEAPSARVCLGLPVKMGTGSFDLMQKLEI 464


>ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Glycine
            max]
          Length = 1651

 Score =  254 bits (650), Expect = 4e-65
 Identities = 159/402 (39%), Positives = 220/402 (54%), Gaps = 29/402 (7%)
 Frame = -1

Query: 1164 LDNAIAKHLEMISKIRGIGFVTTE-----NNFAEDGDED--EXXXXXXXXXXXXXXXXXX 1006
            L++AI  H+ ++SKI GI    T+     +N +ED   +  E                  
Sbjct: 1266 LEDAIQNHMTLLSKISGIKKFKTDPQSNYSNSSEDAHSNGSESEKKGQNNDDDDEDGGGV 1325

Query: 1005 XXXXXXXDQGADAEKRKRQVSDEMEYDEDVQKETPAMTDMHDGEPQSGLESEND--QVEP 832
                   D G+DA+KRK Q +DE++Y++  ++ET      HDGE    +E + D   V+ 
Sbjct: 1326 EDTEGYEDLGSDAQKRKLQGTDEVDYEDGPEEET------HDGELSEEIEGDEDGSDVDA 1379

Query: 831  DEDYTVGGEDPIVEPEVENPESASKFDPALTSVDDMEEEKSQAKNMTVKGRKKKINRVFN 652
            +E+Y     D      +E P  +   D       +++ EK +++  T     KK +R   
Sbjct: 1380 NENYN-NVTDANNSEGLEKPSKSKTIDEK----QNLKREKKKSEPTT-----KKYDRAIF 1429

Query: 651  PHFEKLRFEVEIILRKEPHILLVEIAQQTAKKVFVKTIDSIERCSVVEPKKN-------- 496
               +   FE+      EPHILL +IAQ+TAKKV ++    +  C  +  K++        
Sbjct: 1430 VEAKGKHFEIHFRFTGEPHILLTQIAQRTAKKVCIQNFGKVGECKAITCKESGVIYYGKD 1489

Query: 495  ------------TDPIMLQTAGVNFLTFWKLEEYLDINKVVTNDIYAMLNTYGVEAARAT 352
                             LQT+GV+F TFW+LE+ LD+  + +N+++AMLN YGVEAAR T
Sbjct: 1490 GRKRIEISASEKEQIPALQTSGVHFKTFWELEDDLDVRYIYSNNVHAMLNAYGVEAARET 1549

Query: 351  IINEVKAVFEAYGIRVNMRHLTLIADFMTLQGGYRPMNRLGMEHFGTSPFGKMTFETATR 172
            II EV+ VF++YGI VN+RHLTLIADFMT  G YRPMNR G     TSPF KM FETA  
Sbjct: 1550 IIREVQNVFKSYGISVNIRHLTLIADFMTHTGSYRPMNRTGSIADSTSPFIKMCFETAGN 1609

Query: 171  FIIEAANHGEVDTLECPSASVCLGQPVKMGTGCFDLLQNLHL 46
            FI+EAA HG+VD LE PSA +CLG PVKMGTGC DL+Q L +
Sbjct: 1610 FIVEAAYHGQVDNLETPSARICLGLPVKMGTGCHDLIQKLEI 1651